ZFIN is now using GRCz12tu for Genomic Data
Gene
cacnb1
- ID
- ZDB-GENE-040718-399
- Name
- calcium channel, voltage-dependent, beta 1 subunit
- Symbol
- cacnb1 Nomenclature History
- Previous Names
-
- dihydropyridine receptor b1 (1)
- red
- relaxed
- zgc:91982
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables voltage-gated calcium channel activity. Acts upstream of or within calcium ion transmembrane transport; muscle contraction; and voltage-gated calcium channel complex assembly. Part of voltage-gated calcium channel complex. Is expressed in several structures, including basal plate midbrain region; hatching gland; musculature system; nervous system; and polster. Orthologous to human CACNB1 (calcium voltage-gated channel auxiliary subunit beta 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:91982 (22 images)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001452 | SH3 domain |
| Domain | IPR008145 | Guanylate kinase/L-type calcium channel beta subunit |
| Domain | IPR046937 | Voltage-dependent L-type calcium channel subunit beta-1-4, N-terminal A domain |
| Family | IPR000584 | Voltage-dependent calcium channel, L-type, beta subunit |
| Family | IPR005443 | Voltage-dependent calcium channel, L-type, beta-1 subunit |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Homologous_superfamily | IPR036028 | SH3-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Guanylate kinase/L-type calcium channel beta subunit | P-loop containing nucleoside triphosphate hydrolase | SH3 domain | SH3-like domain superfamily | Voltage-dependent calcium channel, L-type, beta-1 subunit | Voltage-dependent calcium channel, L-type, beta subunit | Voltage-dependent L-type calcium channel subunit beta-1-4, N-terminal A domain |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M2BAY4 | InterPro | 645 | |||||||
| UniProtKB:A0A8M2BBA6 | InterPro | 642 | |||||||
| UniProtKB:A0A8M3B0T0 | InterPro | 606 | |||||||
| UniProtKB:A0A8M3AQC9 | InterPro | 597 | |||||||
| UniProtKB:Q2Q551 | InterPro | 603 | |||||||
| UniProtKB:Q6DG31 | InterPro | 478 | |||||||
| UniProtKB:A0AB32TH81 | InterPro | 594 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cacnb1-201
(1)
|
Ensembl | 1,563 nt | ||
| mRNA |
cacnb1-202
(1)
|
Ensembl | 2,043 nt | ||
| mRNA |
cacnb1-203
(1)
|
Ensembl | 1,670 nt | ||
| mRNA |
cacnb1-205
(1)
|
Ensembl | 1,554 nt | ||
| ncRNA |
cacnb1-004
(1)
|
Ensembl | 690 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers