ZFIN is now using GRCz12tu for Genomic Data

Gene

lemd1

ID

ZDB-GENE-040718-350

Name

LEM domain containing 1

Symbol

lemd1 Nomenclature History

Previous Names

zgc:92287

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable DNA binding activity. Predicted to be located in membrane and nuclear envelope. Is expressed in hindbrain; musculature system; myotome; and pectoral fin musculature. Orthologous to human LEMD1 (LEM domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:92287 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lemd1 Human Ortholog

No data available

Associated With lemd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003887	LEM domain
Domain	IPR013146	LEM-like domain
Family	IPR051656	LEM domain-containing
Homologous_superfamily	IPR011015	LEM/LEM-like domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M6YV85	InterPro	279
UniProtKB:A0A8M2B8Y3	InterPro	314
UniProtKB:A0A8M2B8W2	InterPro	242
UniProtKB:A0A8M2B8V4	InterPro	392
UniProtKB:Q6DHI6	InterPro	285
UniProtKB:A0A8M2B8V9	InterPro	213
UniProtKB:A0A8M2B903	InterPro	376
UniProtKB:A0A8M6Z3Q3	InterPro	393
UniProtKB:A0A8M9PWF4	InterPro	340
UniProtKB:A0A8M9PKP3	InterPro	399
UniProtKB:A0A8M9PF05	InterPro	230
UniProtKB:A0A8M9PT08	InterPro	339
UniProtKB:A0A8M3AV65	InterPro	346
UniProtKB:A0A8M6YVU6	InterPro	370
UniProtKB:A0A8M9P530	InterPro	308
UniProtKB:A0A8M6YXP2	InterPro	327
UniProtKB:A0AC58IJG3	InterPro	285
UniProtKB:A0AC58IJG5	InterPro	274
UniProtKB:A0AC58IJG6	InterPro	267
UniProtKB:A0AC58IJG7	InterPro	285
UniProtKB:A0AC58IJG8	InterPro	274
UniProtKB:A0AC58IJH0	InterPro	339
UniProtKB:A0AC58IJH1	InterPro	274
UniProtKB:A0AC58IJH3	InterPro	304
UniProtKB:A0AC58IJH5	InterPro	346
UniProtKB:A0AC58IJH6	InterPro	242
UniProtKB:A0AC58IJH7	InterPro	346
UniProtKB:A0AC58IJH8	InterPro	242
UniProtKB:A0AC58IJH9	InterPro	267
UniProtKB:A0AC58IJI0	InterPro	230
UniProtKB:A0AC58IJI1	InterPro	304
UniProtKB:A0AC58IJI2	InterPro	242
UniProtKB:A0AC58IJI4	InterPro	248
UniProtKB:A0AC58IJI5	InterPro	248
UniProtKB:A0AC58IJI6	InterPro	255
UniProtKB:A0AC58IJI7	InterPro	213
UniProtKB:A0AC58IJI8	InterPro	257
UniProtKB:A0AC58IJI9	InterPro	257
UniProtKB:A0AC58IJJ0	InterPro	250
UniProtKB:A0AC58IJJ3	InterPro	250
UniProtKB:A0AC58IJJ5	InterPro	376
UniProtKB:A0AC58IJJ6	InterPro	314
UniProtKB:A0AC58IJK5	InterPro	255
UniProtKB:A0AC58IJK7	InterPro	213
UniProtKB:A0AC58IJL2	InterPro	314
UniProtKB:A0AC58IJM2	InterPro	267
UniProtKB:A0AC58IJM6	InterPro	250
UniProtKB:A0AC58IJM9	InterPro	213

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:92287-201 (1) Ensembl	Ensembl	1,476 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-202 (1) Ensembl	Ensembl	871 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-203 (1) Ensembl	Ensembl	1,021 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-204 (1) Ensembl	Ensembl	804 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-205 (1) Ensembl	Ensembl	785 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-206 (1) Ensembl	Ensembl	854 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-207 (1) Ensembl	Ensembl	975 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-209 (1) Ensembl	Ensembl	796 nt	Select Tool ZFIN BLAST
mRNA	zgc:92287-210 (1) Ensembl	Ensembl	778 nt	Select Tool ZFIN BLAST
ncRNA	zgc:92287-006 (1) Ensembl	Ensembl	650 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations