ZFIN is now using GRCz12tu for Genomic Data
Gene
prpf18
- ID
- ZDB-GENE-040704-45
- Name
- PRP18 pre-mRNA processing factor 18 homolog (yeast)
- Symbol
- prpf18 Nomenclature History
- Previous Names
-
- zgc:91830
- Type
- protein_coding_gene
- Location
- Chr: 18 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in generation of catalytic spliceosome for second transesterification step. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of U2-type post-spliceosomal complex; U4/U6 x U5 tri-snRNP complex; and U5 snRNP. Orthologous to human PRPF18 (pre-mRNA processing factor 18).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7140126 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Pre-mRNA processing factor 4 (PRP4)-like | Pre-mRNA-splicing factor 18 | Prp18 | PRP4-like superfamily |
|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PFD4 | InterPro | 351 | ||||
| UniProtKB:Q6GMH0 | InterPro | 342 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
prpf18-201
(1)
|
Ensembl | 1,530 nt | ||
| mRNA |
prpf18-202
(1)
|
Ensembl | 1,056 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers