Gene

kdm2ba

ID

ZDB-GENE-040426-2195

Name

lysine (K)-specific demethylase 2Ba

Symbol

kdm2ba Nomenclature History

Previous Names

wu:fd13a09
zgc:85787

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have DNA binding activity and zinc ion binding activity. Orthologous to human KDM2B (lysine demethylase 2B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With kdm2ba Human Ortholog

No data available

Associated With kdm2ba Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019786	Zinc finger, PHD-type, conserved site
Domain	IPR001810	F-box domain
Domain	IPR001965	Zinc finger, PHD-type
Domain	IPR002857	Zinc finger, CXXC-type
Domain	IPR019787	Zinc finger, PHD-finger
Family	IPR050690	JHDM1 Histone Demethylase
Homologous_superfamily	IPR011011	Zinc finger, FYVE/PHD-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily

Domain Details Per Protein

Protein	Length	F-box domain	JHDM1 Histone Demethylase	Leucine-rich repeat domain superfamily	Zinc finger, CXXC-type	Zinc finger, FYVE/PHD-type	Zinc finger, PHD-finger	Zinc finger, PHD-type	Zinc finger, PHD-type, conserved site	Zinc finger, RING/FYVE/PHD-type
UniProtKB:Q6NUY1 InterPro	411
UniProtKB:A0A8M9Q9M7 InterPro	870
UniProtKB:F1QE63 InterPro	873
UniProtKB:A0A8M9Q3E1 InterPro	872

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	kdm2ba-201 (1) Ensembl	Ensembl	3,247 nt	Select Tool ZFIN BLAST
mRNA	kdm2ba-202 (1) Ensembl	Ensembl	3,247 nt	Select Tool ZFIN BLAST
mRNA	kdm2ba-203 (1) Ensembl	Ensembl	3,484 nt	Select Tool ZFIN BLAST
mRNA	kdm2ba-204 (1) Ensembl	Ensembl	7,045 nt	Select Tool ZFIN BLAST
mRNA	kdm2ba-205 (1) Ensembl	Ensembl	7,012 nt	Select Tool ZFIN BLAST
mRNA	kdm2ba-206 (1) Ensembl	Ensembl	7,394 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations