Gene

calub

ID

ZDB-GENE-040426-1251

Name

calumenin b

Symbol

calub Nomenclature History

Previous Names

fb43g05
sb:eu326
wu:fb43g05 (1)
zgc:63741

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to localize to endoplasmic reticulum. Is expressed in several structures, including axis; blood vessel; head mesenchyme; oocyte; and ventricular zone. Orthologous to human CALU (calumenin).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:63741 (10 images)
eu326 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With calub Human Ortholog

No data available

Associated With calub Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Domain	IPR002048	EF-hand domain
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	EF-Hand 1, calcium-binding site	EF-hand domain	EF-hand domain pair
UniProtKB:F1R5E6 InterPro	315
UniProtKB:Q7SXV9 InterPro	315

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	calub-201 (1) Ensembl	Ensembl	2,541 nt	Select Tool ZFIN BLAST
mRNA	calub-202 (1) Ensembl	Ensembl	1,907 nt	Select Tool ZFIN BLAST
mRNA	calub-203 (1) Ensembl	Ensembl	729 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations