Gene

rtn4rl1b

ID

ZDB-GENE-040310-3

Name

reticulon 4 receptor-like 1b

Symbol

rtn4rl1b Nomenclature History

Previous Names

NgRH2a
rtn4rl1

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Predicted to be located in several cellular components, including membrane raft; perikaryon; and side of membrane. Is expressed in cranial ganglion; neurons; olfactory placode; peripheral olfactory organ; and spinal cord. Orthologous to human RTN4RL1 (reticulon 4 receptor like 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cssl:d0325 (6 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rtn4rl1b Human Ortholog

No data available

Associated With rtn4rl1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000483	Cysteine-rich flanking region, C-terminal
Family	IPR050541	Leucine-rich repeat and transmembrane domain-containing protein
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype
Repeat	IPR025875	Leucine rich repeat 4

Domain Details Per Protein

Protein	Additional Resources	Length	Cysteine-rich flanking region, C-terminal	Leucine-rich repeat	Leucine rich repeat 4	Leucine-rich repeat and transmembrane domain-containing protein	Leucine-rich repeat domain superfamily	Leucine-rich repeat, typical subtype
UniProtKB:Q6WZD2	InterPro	478

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rtn4rl1b-201 (1) Ensembl	Ensembl		2,646 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations