Gene
si:ch73-208g10.1
- ID
- ZDB-GENE-040108-6
- Name
- si:ch73-208g10.1
- Symbol
- si:ch73-208g10.1 Nomenclature History
- Previous Names
-
- sb:cb1043 (1)
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Description
- Predicted to enable integrin binding activity. Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Is expressed in macrophage and notochord. Orthologous to human ICAM3 (intercellular adhesion molecule 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from Thisse et al., 2001
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb1043 (4 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa6920 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa17054 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa25263 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33323 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33324 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003597 | Immunoglobulin C1-set |
| Domain | IPR003598 | Immunoglobulin subtype 2 |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR003987 | Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013098 | Immunoglobulin I-set |
| Domain | IPR013162 | CD80-like, immunoglobulin C2-set |
| Family | IPR047012 | Intercellular adhesion molecule/vascular cell adhesion molecule |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | CD80-like, immunoglobulin C2-set | Immunoglobulin C1-set | Immunoglobulin domain subtype | Immunoglobulin I-set | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 | Intercellular adhesion molecule/vascular cell adhesion molecule | Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A4JYJ9 | InterPro | 899 | ||||||||||
| UniProtKB:A0A8M2BBT5 | InterPro | 894 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch73-208g10.1-201
(1)
|
Ensembl | 5,476 nt | ||
| mRNA |
si:ch73-208g10.1-202
(1)
|
Ensembl | 5,532 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-208G10 | ZFIN Curated Data | |
| Encodes | EST | cb1043 | Thisse et al., 2001 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001098261 (1) | 5499 nt | ||
| Genomic | GenBank:AL928800 (1) | 153880 nt | ||
| Polypeptide | UniProtKB:A4JYJ9 (1) | 899 aa |
- Comparative Orthology
- Alliance
No data available