Gene
slc6a22.2
- ID
- ZDB-GENE-030616-628
- Name
- solute carrier family 6 member 22, tandem duplicate 2
- Symbol
- slc6a22.2 Nomenclature History
- Previous Names
-
- slc6a13l
- si:ch211-263a23.6
- si:zc263a23.6
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Description
- Predicted to enable gamma-aminobutyric acid:sodium:chloride symporter activity. Predicted to be involved in amino acid transport and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in cell projection and plasma membrane.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa10303 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa11020 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa18849 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa20785 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33929 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Sodium:neurotransmitter symporter | Sodium:neurotransmitter symporter superfamily |
|---|---|---|---|---|
| UniProtKB:A0A2R8QKW4 | InterPro | 575 | ||
| UniProtKB:A0A8M2BDC6 | InterPro | 551 | ||
| UniProtKB:F1Q5E6 | InterPro | 608 | ||
| UniProtKB:A0AB32TWV6 | InterPro | 619 | ||
| UniProtKB:A0AB32TY27 | InterPro | 598 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
slc6a22.2-201
(1)
|
Ensembl | 2,332 nt | ||
| mRNA |
slc6a22.2-202
(1)
|
Ensembl | 1,935 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-263A23 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001122761 (1) | 1935 nt | ||
| Genomic | GenBank:AL732567 (1) | 152840 nt | ||
| Polypeptide | UniProtKB:A0AB32TWV6 (1) | 619 aa |
No data available
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Ogawa, Y., Shiraki, T., Kojima, D., Fukada, Y. (2015) Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish. Proceedings. Biological sciences. 282(1812):20150659
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