ZFIN is now using GRCz12tu for Genomic Data
Gene
pkd2l1
- ID
- ZDB-GENE-030616-558
- Name
- polycystic kidney disease 2-like 1
- Symbol
- pkd2l1 Nomenclature History
- Previous Names
-
- si:packtrz.2
- si:xx-packtrz.2
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable calcium ion binding activity; monoatomic cation channel activity; and muscle alpha-actinin binding activity. Acts upstream of or within mechanosensory behavior and notochord development. Predicted to be located in cell projection; cytoplasmic vesicle; and plasma membrane. Predicted to be active in membrane. Is expressed in several structures, including ependymal cell; pharyngeal arch cartilage; sensory system; spinal cord; and spinal cord neural tube. Orthologous to human PKD2L1 (polycystin 2 like 1, transient receptor potential cation channel).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 26 figures from 10 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | EF-hand domain | EF-hand domain pair | Polycystic kidney disease type 2 protein | Polycystin | Polycystin cation channel, PKD1/PKD2 | Polycystin domain |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8N7UVH6 | InterPro | 805 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pkd2l1-201
(1)
|
Ensembl | 2,718 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers