ZFIN ID: ZDB-GENE-030131-9825
Gene Name: SET and MYND domain containing 1a
Gene Symbol: smyd1a    Nomenclature History

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Previous Names: smyd1, sb:cb405, wu:fc09a05

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have histone-lysine N-methyltransferase activity. Involved in striated muscle cell development and thigmotaxis. Localizes to M band. Is expressed in fin; heart; musculature system; and somite. Orthologous to human SMYD1 (SET and MYND domain containing 1).
Genome Resources: Alliance (1),  Gene:321245 (1),  Ensembl(GRCz11):ENSDARG00000009280 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
mb4 Small Deletion Exon 3 Frameshift, Premature Stop CRISPR
mb5 Small Deletion Exon 3 Frameshift, Premature Stop CRISPR
sa31493 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40615 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-smyd1a 2
    CRISPR2-smyd1a
    1
    MO1-smyd1a N/A 2
    MO2-smyd1a N/A 2
    MO3-smyd1a N/A 1
    MO4-smyd1a N/A 1
    MO5-smyd1a N/A 1
    DISEASE ASSOCIATED WITH smyd1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH smyd1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process sarcomere organization (more)
    Cellular Component M band (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA smyd1a-202 (1)    Ensembl 1195
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM smyd1a
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(unc45b:smyd1a-EGFP) unc45b EGFPsmyd1a Danio rerio 1 1
    MARKER RELATIONSHIPS
    smyd1a Contained in: [BAC] CH73-64K8 (1)
    smyd1a Encodes: [EST] cb405 (1) (order this), fc09a05 (order this)
    [cDNA] MGC:77936 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_205540 (1) 1569 nt
    Genomic GenBank:CU929062 (1) 111698 nt
    Select Tool
    Polypeptide UniProtKB:Q6P0R5 (1) 485 aa
    Sequence Information (all 17)
    ORTHOLOGY for smyd1a ( Chr: 5 )
    CITATIONS (34)