Gene
si:ch211-153b23.5
- ID
- ZDB-GENE-030131-9744
- Name
- si:ch211-153b23.5
- Symbol
- si:ch211-153b23.5 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 14 Mapping Details/Browsers
- Description
- Is expressed in several structures, including EVL; digestive system; immature eye; optic primordium; and sensory system.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb252 (16 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa10170 | Allele with one point mutation | Unknown | Premature Stop | ENU |
1 - 1 of 1
Show
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Class I glutamine amidotransferase-like | DJ-1/PfpI |
|---|---|---|---|---|
| UniProtKB:E7F569 | InterPro | 225 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-153b23.5-203
(1)
|
Ensembl | 937 nt | ||
| mRNA |
si:ch211-153b23.5-205
(1)
|
Ensembl | 678 nt | ||
| ncRNA |
si:ch211-153b23.5-002
(1)
|
Ensembl | 797 nt | ||
| ncRNA |
si:ch211-153b23.5-003
(1)
|
Ensembl | 734 nt | ||
| ncRNA |
si:ch211-153b23.5-004
(1)
|
Ensembl | 855 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-153B23 | ZFIN Curated Data | |
| Encodes | EST | cb252 | Thisse et al., 2001 | |
| Encodes | EST | fj10e08 |
1 - 3 of 3
Show
| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001386233 (1) | 939 nt | ||
| Genomic | GenBank:CR381540 (1) | 167095 nt | ||
| Polypeptide | UniProtKB:E7F569 (1) | 225 aa |
No data available
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Fuller-Carter, P.I., Carter, K.W., Anderson, D., Harvey, A.R., Giles, K.M., Rodger, J. (2015) Integrated analyses of zebrafish miRNA and mRNA expression profiles identify miR-29b and miR-223 as potential regulators of optic nerve regeneration. BMC Genomics. 16:591
- Xu, H., Lam, S.H., Shen, Y., and Gong, Z. (2013) Genome-wide identification of molecular pathways and biomarkers in response to arsenic exposure in zebrafish liver. PLoS One. 8(7):e68737
1 - 3 of 3
Show