ZFIN is now using GRCz12tu for Genomic Data

Gene

csde1

ID

ZDB-GENE-030131-8623

Name

cold shock domain containing E1, RNA-binding

Symbol

csde1 Nomenclature History

Previous Names

fa92c07
si:ch211-261n11.2 (1)
wu:fa92c07 (1)
wu:fa97c10
wu:fb53f07
wu:fb78d03

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable protein-RNA adaptor activity. Predicted to be involved in CRD-mediated mRNA stabilization. Predicted to be located in P-body and cytoplasmic stress granule. Predicted to be part of CRD-mediated mRNA stability complex and mCRD-mediated mRNA stability complex. Orthologous to human CSDE1 (cold shock domain containing E1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7146752 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With csde1 Human Ortholog

No data available

Associated With csde1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019844	Cold-shock domain, conserved site
Domain	IPR002059	Cold-shock protein Csp, DNA-binding
Domain	IPR011129	Cold-shock domain
Domain	IPR024642	SUZ-C domain
Domain	IPR056400	Cold shock domain-containing protein E1, CSD domain
Homologous_superfamily	IPR012340	Nucleic acid-binding, OB-fold

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M6Z7J9	InterPro	875
UniProtKB:A0A8M6Z0D9	InterPro	865
UniProtKB:E9QFH8	InterPro	798
UniProtKB:A0A8M9QDL5	InterPro	865
UniProtKB:A0A8M9Q3B4	InterPro	817
UniProtKB:A0A8M9QDL2	InterPro	884
UniProtKB:A0A8M9PQP7	InterPro	880
UniProtKB:A0A8M6Z210	InterPro	846
UniProtKB:A0A8M9Q3B0	InterPro	879
UniProtKB:A0A8M9PQQ1	InterPro	836
UniProtKB:A0A8M9Q9J3	InterPro	878
UniProtKB:A0A2R8QTF0	InterPro	874
UniProtKB:A0AB32TU14	InterPro	865
UniProtKB:A0AB32TVK8	InterPro	826
UniProtKB:A0AB32TVS8	InterPro	865
UniProtKB:A0AB32TWL2	InterPro	817
UniProtKB:A0AB32TYB0	InterPro	884
UniProtKB:A0AB32TYD4	InterPro	808
UniProtKB:A0AB32TZY6	InterPro	846
UniProtKB:A0AC58G6B0	InterPro	870
UniProtKB:A0AC58G6B1	InterPro	869
UniProtKB:A0AC58G6B5	InterPro	874
UniProtKB:A0AC58G6B6	InterPro	865
UniProtKB:A0AC58G6B7	InterPro	861
UniProtKB:A0AC58G6B8	InterPro	864
UniProtKB:A0AC58G6B9	InterPro	859
UniProtKB:A0AC58G6C0	InterPro	851
UniProtKB:A0AC58G6C1	InterPro	884
UniProtKB:A0AC58G6C2	InterPro	855
UniProtKB:A0AC58G6C3	InterPro	859
UniProtKB:A0AC58G6C4	InterPro	865
UniProtKB:A0AC58G6C6	InterPro	855
UniProtKB:A0AC58G6C7	InterPro	803
UniProtKB:A0AC58G6C9	InterPro	849
UniProtKB:A0AC58G6D0	InterPro	845
UniProtKB:A0AC58G6D1	InterPro	846
UniProtKB:A0AC58G6D2	InterPro	813
UniProtKB:A0AC58G6D3	InterPro	832
UniProtKB:A0AC58G6D4	InterPro	822
UniProtKB:A0AC58G6D5	InterPro	807
UniProtKB:A0AC58G6D6	InterPro	850
UniProtKB:A0AC58G6E0	InterPro	827
UniProtKB:A0AC58G6E4	InterPro	868
UniProtKB:A0AC58G6F1	InterPro	856
UniProtKB:A0AC58G6G0	InterPro	840

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	csde1-202 (1) Ensembl	Ensembl	4,654 nt	Select Tool ZFIN BLAST
mRNA	csde1-204 (1) Ensembl	Ensembl	1,131 nt	Select Tool ZFIN BLAST
mRNA	csde1-205 (1) Ensembl	Ensembl	1,052 nt	Select Tool ZFIN BLAST
mRNA	csde1-206 (1) Ensembl	Ensembl	2,490 nt	Select Tool ZFIN BLAST
mRNA	csde1-207 (1) Ensembl	Ensembl	3,383 nt	Select Tool ZFIN BLAST
mRNA	csde1-208 (1) Ensembl	Ensembl	3,398 nt	Select Tool ZFIN BLAST
ncRNA	csde1-002 (1) Ensembl	Ensembl	604 nt	Select Tool ZFIN BLAST
ncRNA	csde1-003 (1) Ensembl	Ensembl	582 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations