Gene
hist1h2a6
- ID
- ZDB-GENE-030131-6292
- Name
- histone cluster 1 H2A family member 6
- Symbol
- hist1h2a6 Nomenclature History
- Previous Names
-
- fi43a09
- si:ch1073-153i20.6
- wu:fi43a09
- wu:fi48c04
- zgc:165551
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Description
- Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.
- Genome Resources
- Note
-
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Histone-fold | Histone H2A | Histone H2A, C-terminal domain | Histone H2A/H2B/H3 |
|---|---|---|---|---|---|---|
| UniProtKB:A6QL59 | InterPro | 127 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
hist1h2a6-201
(1)
|
Ensembl | 463 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | Fosmid | CH1073-153I20 | ZFIN Curated Data | |
| Contains | SNP | rs3728373 | ZFIN Curated Data | |
| Contains | SNP | rs3728374 | ZFIN Curated Data | |
| Contains | SNP | rs3728375 | ZFIN Curated Data | |
| Contains | SNP | rs3728376 | ZFIN Curated Data | |
| Contains | SNP | rs3728377 | ZFIN Curated Data | |
| Encodes | EST | fi43a09 | ||
| Encodes | EST | fi48c04 | ||
| Encodes | cDNA | MGC:165551 | ZFIN Curated Data | |
| Has Artifact | cDNA | MGC:163047 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001245963 (1) | 464 nt | ||
| Genomic | GenBank:CU457819 (1) | 86417 nt | ||
| Polypeptide | UniProtKB:A6QL59 (1) | 127 aa |
No data available
- Qian, P., Kang, J., Liu, D., Xie, G. (2022) Single Cell Transcriptome Sequencing of Zebrafish Testis Revealed Novel Spermatogenesis Marker Genes and Stronger Leydig-Germ Cell Paracrine Interactions. Frontiers in genetics. 13:851719
- Wu, X.M., Cao, L., Nie, P., Chang, M.X. (2019) Histone H2A cooperates with RIP2 to induce the expression of antibacterial genes and MHC related genes. Developmental and comparative immunology. 101:103455
- Hirosawa, M., Hayakawa, K., Yoneda, C., Arai, D., Shiota, H., Suzuki, T., Tanaka, S., Dohmae, N., Shiota, K. (2016) Novel O-GlcNAcylation on Ser(40) of canonical H2A isoforms specific to viviparity. Scientific Reports. 6:31785
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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