Gene

c1qtnf2

ID
ZDB-GENE-030131-5133
Name
C1q and TNF related 2
Symbol
c1qtnf2 Nomenclature History
Previous Names
  • fe50b04
  • wu:fe50b04
Type
protein_coding_gene
Location
Chr: 14 Mapping Details/Browsers
Description
Predicted to be located in extracellular region. Orthologous to human C1QTNF2 (C1q and TNF related 2).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa1740Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
sa7397Allele with one point mutationUnknownMissenseENU
sa12217Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With c1qtnf2 Human Ortholog
No data available
Associated With c1qtnf2 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001073 C1q domain
Family IPR050392 Collagen/C1q domain-containing
Homologous_superfamily IPR008983 Tumour necrosis factor-like domain superfamily
Repeat IPR008160 Collagen triple helix repeat
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Domain Details Per Protein
Protein Additional Resources Length C1q domain Collagen/C1q domain-containing Collagen triple helix repeat Tumour necrosis factor-like domain superfamily
UniProtKB:E7F6Z0 InterPro 292
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 14
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA c1qtnf2-201 (1)
Ensembl
Ensembl 1,246 nt
ZFIN BLAST
mRNA c1qtnf2-202 (1)
Ensembl
Ensembl 459 nt
ZFIN BLAST
mRNA c1qtnf2-203 (1)
Ensembl
Ensembl 4,933 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-235E9
EncodesESTfe50b04
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_009291263 (1)4416 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:AL929007 (1)187464 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:E7F6Z0 (1)292 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanC1QTNF25
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseC1qtnf211
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
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