Gene
pfas
- ID
- ZDB-GENE-030131-4420
- Name
- phosphoribosylformylglycinamidine synthase
- Symbol
- pfas Nomenclature History
- Previous Names
-
- fd05a06
- si:dkey-183n20.16
- wu:fd05a06
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Description
- Predicted to enable phosphoribosylformylglycinamidine synthase activity. Predicted to be involved in purine nucleotide biosynthetic process. Predicted to act upstream of or within glutamine metabolic process. Predicted to be active in cytoplasm. Is expressed in brain; digestive system; eye; heart; and muscle. Orthologous to human PFAS (phosphoribosylformylglycinamidine synthase).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Li et al., 2015
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR010918 | PurM-like, C-terminal domain |
Domain | IPR040707 | Phosphoribosylformylglycinamidine synthase, N-terminal |
Domain | IPR041609 | Phosphoribosylformylglycinamidine synthase, linker domain |
Domain | IPR055181 | FGAR-AT, PurM N-terminal-like domain |
Family | IPR010073 | Phosphoribosylformylglycinamidine synthase PurL |
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Domain Details Per Protein
Protein | Additional Resources | Length | Class I glutamine amidotransferase-like | FGAR-AT, PurM N-terminal-like domain | Phosphoribosylformylglycinamidine synthase, linker domain | Phosphoribosylformylglycinamidine synthase, N-terminal | Phosphoribosylformylglycinamidine synthase PurL | Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily | PurM-like, C-terminal domain | PurM-like, C-terminal domain superfamily | PurM-like, N-terminal domain superfamily |
---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB:Q5TZ72 | InterPro | 1314 |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | DKEY-183N20 | ZFIN Curated Data | |
Encodes | EST | fd05a06 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_001045202 (1) | 4602 nt | ||
Genomic | GenBank:BX322665 (1) | 192437 nt | ||
Polypeptide | UniProtKB:Q5TZ72 (1) | 1314 aa |
- Lewis, V.M., Saunders, L.M., Larson, T.A., Bain, E.J., Sturiale, S.L., Gur, D., Chowdhury, S., Flynn, J.D., Allen, M.C., Deheyn, D.D., Lee, J.C., Simon, J.A., Lippincott-Schwartz, J., Raible, D.W., Parichy, D.M. (2019) Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores. Proceedings of the National Academy of Sciences of the United States of America. 116(24):11806-11811
- Sanchez, N.E., Harty, B.L., O'Reilly-Pol, T., Ackerman, S.D., Herbert, A.L., Holmgren, M., Johnson, S.L., Gray, R.S., Monk, K.R. (2017) Whole Genome Sequencing-Based Mapping and Candidate Identification of Mutations from Fixed Zebrafish Tissue. G3 (Bethesda). 7(10):3415-3425
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Li, Y., Li, G., Görling, B., Luy, B., Du, J., Yan, J. (2015) Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of De Novo Purine Synthesis in Circadian Control of Cell Cycle. PLoS Computational Biology. 11:e1004086
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