Gene
zbtb40
- ID
- ZDB-GENE-030131-1704
- Name
- zinc finger and BTB domain containing 40
- Symbol
- zbtb40 Nomenclature History
- Previous Names
-
- fb78c07
- wu:fb78c07
- Type
- protein_coding_gene
- Location
- Chr: 11 Mapping Details/Browsers
- Description
- Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB40 (zinc finger and BTB domain containing 40).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa6217 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa14144 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa21957 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa35138 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa38856 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa38857 | Allele with one point mutation | Unknown | Splice Site | ENU |
1 - 6 of 6
Show
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | BTB/POZ domain | Ikaros C2H2-type zinc-finger | SKP1/BTB/POZ domain superfamily | Zinc finger C2H2 superfamily | Zinc finger C2H2-type |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M2BKP8 | InterPro | 1061 | |||||
| UniProtKB:A0A8M9Q3U6 | InterPro | 212 | |||||
| UniProtKB:E7F660 | InterPro | 1060 |
1 - 3 of 3
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
zbtb40-201
(1)
|
Ensembl | 3,554 nt | ||
| mRNA |
zbtb40-202
(1)
|
Ensembl | 3,246 nt |
1 - 2 of 2
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-213O11 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-178D22 | ZFIN Curated Data |
1 - 2 of 2
Show
| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_005172915 (1) | 4224 nt | ||
| Genomic | GenBank:BX248230 (1) | 217432 nt | ||
| Polypeptide | UniProtKB:A0A8M2BKP8 (1) | 1061 aa |
- Comparative Orthology
- Alliance
- Kossack, M.E., High, S.K., Hopton, R.E., Yan, Y.L., Postlethwait, J.H., Draper, B.W. (2018) Female Sex Development and Reproductive Duct Formation Depend on Wnt4a in Zebrafish. Genetics. 211(1):219-233
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
1 - 2 of 2
Show