Genomic Feature

ca116

ID
ZDB-ALT-241230-8
Name
ca116
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Childs Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 8
Variants
Variant Type
Small Deletion
Variant Location
Chr 8: 50258445 - 50258457 (GRCz11) (1) Details
Nucleotide change
CCGCTTCTTTTTC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
13 bp deleted in Exon 2 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GCTTAGTCTCTGATTTATCAGGGGTCGCCACAGCAGAATGAACCGCCAACTATTCCAGCATATGTTTTTCGCAGCGAATGCATTTCCAGCTGCAAATCAGTACTGGGAATATATAATTTTATAGACCATCTCAATGTAGTTGGCCCATGTACATTTCCTGTTTGTTACCTAACTGTAACAAGAGTTAAATCAATCGTATGTTCACTTTAAAACAGCTATCATAACATTATTTATCAATATGTGGACCTTTTTGGATTCTCAGAAGCTATAGAAATTAAAAATGTAAAACAGGAAATACATTAGGACCCTTGTTATTGTTTACATTCCTTAGTCTATATGTGTTATATATCTGCTCTGTTACATTACTATCATAATTGTTACTATCTTTTTCCTTTATGGGTTCCATTTCTGTAGGTTTGTTACTTGCATTAATATAAATAACTCAATTAATTAGTGAATAGAGCAATAAATACCTGCAGGTGCGTGAACGCGGCGCGCGA
CCGCTTCTTTTTC/- CCGCCTCCCCCCGTCATCTCTGTCGACGACACAGTTTTACCCTCTGAAGTCCGACAAGTATCCGCTGAATCTGTGAAGTAAGTACACGATATTCAACTTTAACATGACATGTTTTCTCACAGGAAACCTGGCTTTTAATTTCAGATACATATCAGAATTTGACAAATATCTTGCGTGCCCTCAAATAATGTCGGGTTAAACTTCTCGGATAGTTCATCTGTAACTGGACAATGTAACCAGTTCACCTATAACAGAATGATTTACATACATTTTCTCAACCTCAAGTGGTTATAAACCTTTATAAGTTTCTGAATCCTCTTCAGTGTCAAAGAAGATATTTTGAAGAATGTTGGAAACCCATTGACATCCATAATAGGAAAAACAAATGCGAAGTTAATGGTTTGGGAAGTCCAGCTTTCTTCAAAATATCTTGAAAAACTCAATAGAAATTTGGAAACGGTGGAGGATAAGTAAATTATTCGTTCATTAATTTTCCTTCG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
nkx3-1ca116/ca116Homozygous♀-/-Fig 2 with image from Ahuja et al., 2024
nkx3-1ca116/ca116Homozygous♀+/- ♂+/-Fig 4 with image from Ahuja et al., 2024
nkx3-1ca116/ca116; ca101Tg; ca504TgComplexFig 5 with image from Ahuja et al., 2024
1 - 3 of 3
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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