Genomic Feature

sh696

ID
ZDB-ALT-240708-1
Name
sh696
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Bandmann Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 10
Variants
Variant Type
Delins
Variant Location
Chr 10: 24719480 - 24719484 (GRCz11) (1) Details
Nucleotide change
TCCAG/ACAAAAAAAGCTGCGTTTTTACTTGTTTAATGTGTGGCTTAATTGTAGTGTTTTTCTGTGGTTTAAATATATTTTGTATTGTATGTTGTATTTTTATTTAAATTTAAATTTTAGCATTATTTTTTTATTTCAAA
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
136 bp inserted / 5 bp deleted in Exon 3 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
ATTAACCTTAAATCTTAATTTTAAATCAAAAATATAAAATAAACCACAAAAAAATCCTTGATGTTTGTGGAGGGAAAAAACATGGAATGTGGTTCCTCATTCAGTGGTAGAAGCTGTAGGGAAACTCCAGCATGACATTAGCATGTGATGCATACTATCAAAATAGCAACAGAAGTGCAAAAACAAAACTGCAAGAGTCAAACTGAAAAGCTGAACATGCAACAACCAAGAGTCACACATCTGCTTTACCGGCTCCAACCCTTTAAACCCCTCCAACCCACAAACACCAACACTACTGCTGCAATACACCATGGCTTATTGATCACATTTCTCTGTTTTCTGATGATGCATCTCTGATTTCTCACCTTCTCTCCCTTGTTCTCGGACTCCTGCAGGATTTGTATGAGCCACTGTAGCTGATCTGCTGGGTCAGTGGAGTTCACCATCAGCCAGTAGTTTTCTCTGGAGCAAAAGTTCATGTTCAGAGACACAAGCCTCAA
TCCAG/ACAAAAAAAGCTGCGTTTTTACTTGTTTAATGTGTGGCTTAATTGTAGTGTTTTTCTGTGGTTTAAATATATTTTGTATTGTATGTTGTATTTTTATTTAAATTTAAATTTTAGCATTATTTTTTTATTTCAAA GCTCAACCTCCACGCTGTAGAAACCACCACGGCTGCAAAACACACATTACACAAATGATAATTAAACTAATCAATCATAATATTGGCATTAATTATTTAGATCCGGCAGGTATTATCACAAAAATTAATACATAACTATATCAAAACAAAACTATACCATCATTATCAATAGTATAAAAAATAAATAAATAATTAAATAATAATAATGATGATGATAATAATAATAATGGTCATAAGAATTAATATTTTTGTTATTATTATTAAATATAAAAAAGAAAATTTGTATTAAAGAAAATAATTTCCTGAACTGCAATAATAATAAGTACATTGTAAATATAGAAATTAGTAAAAAAAACAAAATTTCTTAAACTGTTATAATAATAATATTAATAATAATAAATTAATAATAAATTAAAATAACAAACCGTCATATCATTTAACACCTTGTAGCTACATCAGCTACTCTTTGTGGCAAAACGATTAGTAAATAATACAAATAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
smpd1sh696/sh696Homozygous♀+/- ♂+/-4 figures with image from Keatinge et al., 2023
gba1sh391/sh391; smpd1sh696/sh696Complex4 figures with image from Keatinge et al., 2023
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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