Genomic Feature

z52

ID
ZDB-ALT-240605-1
Name
z52
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Jurynec Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 24
Variants
Variant Type
Small Deletion
Variant Location
Chr 24: 7933473 - 7935221 (GRCz11) (1) Details
Nucleotide change
CTGGCAGGTAAGGGTCGAAGGATTTGTGTATTACAGATATCAGACTAAAGCTTCTCTGTACTGTAAACAAATGCTGGCTTTCACAAATAGATTAAGTCAAGTAAAAGTTAAAAGGGTTTTTACAAATGTAGGCGGATCGAACATAAAACAGTTGTCTCAGAAAAGTCTAAAGAATTGTGTTGTTTCATCTCATTTTAACTAAGTAGTCAAAAGTTTTTCGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACTCACCGGCCACTTTATTAGGTACACCTTACTACTACTGGGTTGAACCCTTGGCATGGATTCAACAAGGTACTGGAAATATTCCTCTGGGATTTTCGTCCATATTGATATGATAGCATCACGCAGTTGCTGTAGATATGTTGGCTGCACATCCATGATGCAATCTCCCCGTTAAACCACATCCCATTGAATTGATCTGGTGACTGTGGTGGCCATTTGAGTACAGTGAACTCATTGTCATGTTCAAGAAACCAGTTTGAGATGATTCACACTTTATGACATGGCGTGTTATCCTGCTGGAAGTAGCCATCAGAAGATGGGCACGCTGTGGTCATAAAGGGATGGACATGGTTAGCAAGAATACTCAGCTGTGGCATTGAAACAATGCTCAGTTGGTACTAATGTGCCTAAAGTGTGGCAAGAAAATATCCCCCACACCATTACACCACCAGCCTAAACCATTGATACAGTGAAGGATGGATCCATGCCTTCATGTTATTCATGCCAAATTCTGACCCTACCATTCGAATGTCACAGCTGAAATCAAGACTCATCAGACAAGGCAACATTTCTCCAATCTTCGGTTGTCCAATTTTGGTGAGCCTGTGCGAATTGAGCCTCAGTTTTCTGTTCTTGGCTGACAGGATTGGCACCCAGTGTGGTCTTCTGCTGCTGTAGCCCATCCACCTCAAGGTTAGACGTGTTGTGCATTCAGAGAAGCTCTTGTGCATACCTCGAGTCGCTCACTGGATATTTTCAATTTTTTGGACCATTTTCTGTAAACCCTAGAGATGGTTGTGCAAGAAAATCCAAGTAGATCAGCAGTTTCTGAAATACTCAGACCAGCCCGTCTGACACCAACAACCATGCAACATTTAAAGTCACTTAAATCAACTTTCTTCCCCATTCTGATGCTCGGTTTGAACTGTGACCATGTCTACATGCCTAAATGCATTGACTACATTAACGAGCAGTTGAACAGGTGTACCTATTAAAGTGGACACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATAACAACAACAACAACAATGCAAATAATTATAAATGTGCAAGATATTTTTTTATTGCGTACAGTCATTTAAACTAAAAATTTATCTTTTTTCAGGACTGGATTATTGCACCTGAAGGCTACGCAGCAAACTACTGTGACGGAGAATGCTCTTTTCCTCTAAACGCGCATATGAATGCTACTAATCATGCAATAGTACAGACACTGGTGAGTCCTTCATCATATATTAAATAATAAACCCTGCAGACATAACAAAACAAGATCATATTATAGCAGCGAGATTACAAAAGGCAAGTAAATTCTCGCTTCATTTTTCAGGTCCATCTGATGAATCCAGAGAACGTCCCAAAGCCATGTTGTGCTCCAACCAAACTCCACGCAATCT/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
1749 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TTGTCCAAAGTGTATGTGCGTGAATGAGTGTGTATTGATGTTTCCCGGAGATGGGTTGCAGCTGGAAGGGCATCCGCTGCGTAAAAACATGTGCTGGATAAGATGGTGATTCATTCCACTGTGGCGACCCCGGACTGATAAAAGGACTATGCCGAAAATAAAATAAATGAATATCCAATTGTAAGAAACATAAAACTCTTAACCAATTTACACCATCTGATCGATACAGCATATTGTGTGCAAGTGCTGTTTTTATATTATTATATTTATTATTATTATTATTATATTTTTTAAGATGTGAAATATATAGCTGCAGTTAATAAAACTGGGCATAATTCTCTCCCAATGGATCTGTTAAAGACTCGCTGATAAAGCTAAAACTCATGCTGAATTTGTGTATATTAATGTTTCTCTTCTCTGTGATTGGCAGATTACAACAGCAGTGATCAGAAGACAGCCTGCAGAAAGCATGATCTGTATGTGAGTTTCAGAGAATTGAG
CTGGCAGGTAAGGGTCGAAGGATTTGTGTATTACAGATATCAGACTAAAGCTTCTCTGTACTGTAAACAAATGCTGGCTTTCACAAATAGATTAAGTCAAGTAAAAGTTAAAAGGGTTTTTACAAATGTAGGCGGATCGAACATAAAACAGTTGTCTCAGAAAAGTCTAAAGAATTGTGTTGTTTCATCTCATTTTAACTAAGTAGTCAAAAGTTTTTCGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACTCACCGGCCACTTTATTAGGTACACCTTACTACTACTGGGTTGAACCCTTGGCATGGATTCAACAAGGTACTGGAAATATTCCTCTGGGATTTTCGTCCATATTGATATGATAGCATCACGCAGTTGCTGTAGATATGTTGGCTGCACATCCATGATGCAATCTCCCCGTTAAACCACATCCCATTGAATTGATCTGGTGACTGTGGTGGCCATTTGAGTACAGTGAACTCATTGTCATGTTCAAGAAACCAGTTTGAGATGATTCACACTTTATGACATGGCGTGTTATCCTGCTGGAAGTAGCCATCAGAAGATGGGCACGCTGTGGTCATAAAGGGATGGACATGGTTAGCAAGAATACTCAGCTGTGGCATTGAAACAATGCTCAGTTGGTACTAATGTGCCTAAAGTGTGGCAAGAAAATATCCCCCACACCATTACACCACCAGCCTAAACCATTGATACAGTGAAGGATGGATCCATGCCTTCATGTTATTCATGCCAAATTCTGACCCTACCATTCGAATGTCACAGCTGAAATCAAGACTCATCAGACAAGGCAACATTTCTCCAATCTTCGGTTGTCCAATTTTGGTGAGCCTGTGCGAATTGAGCCTCAGTTTTCTGTTCTTGGCTGACAGGATTGGCACCCAGTGTGGTCTTCTGCTGCTGTAGCCCATCCACCTCAAGGTTAGACGTGTTGTGCATTCAGAGAAGCTCTTGTGCATACCTCGAGTCGCTCACTGGATATTTTCAATTTTTTGGACCATTTTCTGTAAACCCTAGAGATGGTTGTGCAAGAAAATCCAAGTAGATCAGCAGTTTCTGAAATACTCAGACCAGCCCGTCTGACACCAACAACCATGCAACATTTAAAGTCACTTAAATCAACTTTCTTCCCCATTCTGATGCTCGGTTTGAACTGTGACCATGTCTACATGCCTAAATGCATTGACTACATTAACGAGCAGTTGAACAGGTGTACCTATTAAAGTGGACACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATAACAACAACAACAACAATGCAAATAATTATAAATGTGCAAGATATTTTTTTATTGCGTACAGTCATTTAAACTAAAAATTTATCTTTTTTCAGGACTGGATTATTGCACCTGAAGGCTACGCAGCAAACTACTGTGACGGAGAATGCTCTTTTCCTCTAAACGCGCATATGAATGCTACTAATCATGCAATAGTACAGACACTGGTGAGTCCTTCATCATATATTAAATAATAAACCCTGCAGACATAACAAAACAAGATCATATTATAGCAGCGAGATTACAAAAGGCAAGTAAATTCTCGCTTCATTTTTCAGGTCCATCTGATGAATCCAGAGAACGTCCCAAAGCCATGTTGTGCTCCAACCAAACTCCACGCAATCT/- CCGTGCTCTACTATGATGATAATTCCAACGTCATTTTGAAAAAATACAGGAACATGGTGGTGCGTTCGTGTGGCTGCCAC  ...
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
bmp6z52/+ (TU)Heterozygous♀+/- ♂+/-Fig. 2 with image from Styrkarsdottir et al., 2023
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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