Genomic Feature

zf3789

ID
ZDB-ALT-240516-6
Name
zf3789
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 19
Variants
Variant Type
Small Deletion
Variant Location
Chr 19: 46227186 - 46227207 (GRCz11) (1) Details
Nucleotide change
ATTAAGGATGACAAGGGCAACC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
22 bp deleted in Exon 6 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
ATCACTTTTTTTGGATTTTTAATTTTGAAGCAAACAGCAAAATAGCATTGATCCTAGACATTATCATTTAAATATTGAGTTATTAAAAATAAAACTTAACTATAAATCACATACAGATGGCCAAATTATGTTTGAAAGTTATGCAGTTTATATTAAAACTGTTTTATTTACCGTATTACAAACCATTAACTAATGCTGCAAGCTCAATAAACTACTAATTAACAGTTTATCAATAGTTAGTAAAGTAGTAGTTTAAGGCTTTAGGTAGGATTAGGGATGTAGAATTAGATCATACTTTATAACTACTAATGGACAGCTAATATCTTAATAATAGGCAGGTAATAAGCCAGTAGTTAATAGTATGAGTTGTGACCTAAACTAAAGTGTTACCTGATTTTTTTGTAAACATGCATATGTATGTTCATTTGCTTCTGCTGTTTAATATTTAGCTGGACTGTCCGCTGGCCATGGAGCGAATCAAAGAGGACCGACCGATCACC
ATTAAGGATGACAAGGGCAACC/- TGAATCGCTGCATTGCAGACATCGTTTCAGTACGTATCTCAAACTCCTAATGCAGTGCTTTCGTGTAGCCTAGAATGAATAGCATTAATGCCAGAGCAGCCCTCAGTTTATTGATCGAGCACAGATGAGACCTTTTTGCTCCAGCTCTTCCATTAAGCAGATTTCTCCAATCAGACTAGGAGAAATAATGGCATGTGTACTTTGTCATGCTGGAGCACCCGCTAAAATAAATACTTAGCATTGATAATAACCAGATGTGTTTATATAAAGGCACAAAAATCAGCTTTAATAAATTATAATGCAAGTAATCCAGTTTTTTTCCCCAGTAGAGACATCAAAACACAAAACAGGGTGTCCATGATGTCTTAAAGTCACTGAGATATATTGTGTTTTAGGCTTTAAATCATTTTAATCTGGTCTTAATTTTTCTATGTCCATGGAACATACCAAACTGGGCTCAATACAATCGCCATCAATACATTTCAATATATCTTTTAATA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
vps28zf3789/zf3789Homozygous♀+/- ♂+/-2 figures with image from Dong et al., 2022
vps28zf3789/zf3789; s843Tg/s843TgComplexFig. 6 with image from Dong et al., 20222 figures with image from Dong et al., 2022
vps28zf3789/zf3789; s843Tg/s843Tg; sd2Tg/sd2TgComplexFig. 1 with image from Dong et al., 2022Fig. 1 with image from Dong et al., 2022
1 - 3 of 3
Show
Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
Show
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.