Genomic Feature

zf3569

ID
ZDB-ALT-230404-9
Name
zf3569
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Current Source
extinct
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 5
Variants
Variant Type
Small Deletion
Variant Location
Chr 5: 7889235 - 7889242 (GRCz11) (1) Details
Nucleotide change
CCTGTATA/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
8 bp deleted in Exon 2 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CCCCTGCTCTTCTTACGTAAATCCAACAGAGGCCGCTGTCGACTGACTGACCAACTGACTGACCGAACCTCCCACCTACCCCTTCCCTAAACCCAACTGATAGTGTTTTCAAAAGCACTGACTGACCAGCTCATCATCTTCCCTAAACCCAACTGATAGTGTTTTAAAAAGCAATCCAGAAAAAGAAAAGCCCTCGTCTGATTTTTACTATGTTTTCTTTTTTTTATTTTTTTTTTATTTTACCACATCCCTTATGTTTATTTTATTTTTATTTTTTTGGCTTATGTTTTTGTATTACTCACTTTCTGGAAACGATCTTTGCCGGACTCAAACCCTGTCGTCGTGGTTCGTTATAAAGACAAAATGCAGCCATGCGTACTTCTGGCTACATAATTCACCAACTCCAGAAATGTATATAGGAGTATGCTTTTAGAATGAGCCCATGTTGCAACTAAACCAAAGATTAAGATACTTACCCAGTTCTCCAAACATCCACTCCT
CCTGTATA/- CAGTTGATGAAGAAGATTGGAGACTGTGTGATGGCCATGAGGAAATCACTAACCGCCAGGTTCATGATGAAATAATTAGGCAGGCTCCGCAACTTTTTGTTACTGCAAAAAAAAAAGAAAAAAGAAAAGTTAAAACAGACAGTACATCGCTTATGAACAATCATGCTTTGACGCTTTTACTTACACAGTAAATGACAATATAAGATATTATGAAGAATGTTTGGGCTTTTGTTATATGGACAAAAGGTATGTCAATGATAATCATAACCAGCAGTCTTCAAAATATCTTCTTTTGGGTTTTTTAGAATTAAAAGAATTGCAGAGGTAAGCTTTCAAATATATTTTTTACGTTTCTAAATAAAAACAAATGGACAAAATATAGATTTTAAACAATATTTGGATGATGTAATACATAATTTTATGTTATCTATACAGAATTTTTTCCATATTTAATATATTTTTAAAAATATTAAAGCATTTAAAATAGATTTGCTTATTAA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
opn4xbzf3569/zf3569Homozygous♀-/- ♂-/-
opn4.1zf3568/zf3568; opn4xbzf3569/zf3569ComplexFigure 4 with image from Dekens et al., 20223 figures with image from Dekens et al., 2022
1 - 2 of 2
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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