Genomic Feature

ci1013

ID
ZDB-ALT-220310-1
Name
ci1013
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Waxman Lab
Current Source
Other Pages
Notes
Comment Citation
Fish carrying this allele are homozygous viable. Homozygous males are largely  ... Falkenberg et al., 2021
Genome Browser
Genome Build: GRCz11Chromosome: 24
Variants
Variant Type
Small Deletion
Variant Location
Chr 24: 17273531 - 17273574 (GRCz11) (1) Details
Nucleotide change
CATCTCCCTGGAGGAGTTCGATCCTGGGGTCAAAGAGGCTGCTG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
44 bp deleted from position 17273531 to 17273574 in Exon 4 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TTGGCTGTGTTTTGGATAATTGTCTTGCTGTAATATCCACCCTGGCTTCATCATCTTGTTAATGTAGAGGTCAGCTTGAAGCAGCTGTAATAATTTACAATGATAAAGGTTAGATGGTTGCTGAATAACTACTAAGAGATTTCAGCTGCTGTCTGGGCATTCACTAATTTGGTGAATTGAATTGAATTAATTTCTACATCTTCTTTTCTTCATGTGTTCAATACTTTTTCCCAGTGTCCTAAGTTTTTCTCAGAGGATGAAAAAAATAAAACCTTGATAAATTCTATAAATATCTAAAGCTGCATTTCAGGACTGCTTGTCATTCCTTTCTTAAGTGTAATTAATATATGATTGCTTTGTCCATTCCCCTATGAATATATGGGATATGAAAGACAGCGATTCTATAAGAAAGCTGCTGCATTCGTTCTTCGGGCTGTTGCTAAGCATTCCCCCGAGCTGGCCCAGGCTGTGGTGGACTGTGGAGCAGTGGACGCTCTTGT
CATCTCCCTGGAGGAGTTCGATCCTGGGGTCAAAGAGGCTGCTG/- CATGGGCTATAGGCAACATCGCCAGACATAATGGCCGTAAGTGTAAAGCTAAAAGGGTTTTTTAATGTTTACGGTAATGTTGCCCTAGCTGTTCATCTTTTCTCTCCTGGTGTGCAGAGCTGTCTCAGGCAGTGGTTGATGCTGGAGTTGTGCCTCTGCTCGTGTTATGCATCCAGGAACCTGAAATAGCCCTGAAGAGAGTTGCTGCTTCTGCTCTGAGCGATATAGCCAAACATTCTCCAGAGCTGGCTCAAACTGTGGTGGACACAGGGGCAATCGCACACCTTGCACAGATGATCCTAAACCCAGATGCCAAATTGAAGGTCACAAAGCCTACAGATATTATAATCAATGACTCGCAAAGGGATAGTTCAGCCAAAAATGAAAATCTGTCATTGTTTACTCATCCTTTACTTGATTCAAACCTTAATGAGTTTCTTTCTTATGTTCAACACAAATAGTGAGTTTAATTTCATTTTTGGGTGAACTATATTGTTAAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
spag6ci1013/ci1013Homozygous♀+/- ♂+/-Fig. 8. with image from Falkenberg et al., 2021
spag6ci1013/ci1013Homozygous♀+/- ♂-/-Fig. 8. with image from Falkenberg et al., 2021
spag6ci1013/ci1013; gl21TgComplexFig. 8. with image from Falkenberg et al., 2021
spag6ci1013/ci1013; uwm1TgComplexFig. 8. with image from Falkenberg et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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