Genomic Feature

mhn1

ID
ZDB-ALT-211021-2
Name
mhn1
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Tostivint Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 22
Variants
Variant Type
Small Deletion
Variant Location
Chr 22: 24311373 - 24311547 (GRCz11) (1) Details
Nucleotide change
CCTCGCACTTCACTTGAAGATCCTCAAACACAGTATTTCCAGAAACAGGCTACAAAGAATTGTAAAAAAAAAAAAAAAATGAAATATGACACTTTTATCAACTTTATTGAAGATATAAATCTGCAAAACTCACTGTCATCTCGTTTGCGGGTCATCGATCTTCTGTTGTCCATTG/-
Variant Notes
Deletion of 175bp including the coding sequence of the mature peptide.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
175 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GGGTAGGATAAAATGTTTGGAAACCGGCTCTGACTTGCATATTATAAATCTTCAAGGGCTACAGTTTTAACTAAAATCTGAATAATAAAAAATATTTCTTGACAACTTGAGGATGAACAAACTAACAGCAAATATTCATTTTTGAGTGAAAGAGAAATGTCCCATTTGGACAGTTCAAAGACTTAACACTAGAGGGAGACAACAGCTCTTAAAAAAACACTCAAGGCAGCTTGCCGTTGATTTAAATTAGAGAATATTTAAAAAGGCAAATAATGTGCATAATGCAATGAAGGAATAAACCAGATTTTTTTCCTTTTACATTTTATTGACATGACATTTAAATAAAATACATTTTTGTTAAAAGAGTACAGTCGTGAGTACATTATTACTATCATGATTATCATGACATGTTCTGAATACATATTCATTTGATATGTAAAATGATTCTGCTTGTTTGACACATCTTAAGGCATTCAATGATTTTGCAGACTTTTCCTTCT
CCTCGCACTTCACTTGAAGATCCTCAAACACAGTATTTCCAGAAACAGGCTACAAAGAATTGTAAAAAAAAAAAAAAAATGAAATATGACACTTTTATCAACTTTATTGAAGATATAAATCTGCAAAACTCACTGTCATCTCGTTTGCGGGTCATCGATCTTCTGTTGTCCATTG/- CGTTTGACACCAGTTTTCTTTCAAGATTGAGCTCCTTTTGAAGCTGAAACGGGTTTTTGACAATCAGAACAGTTGATTTAGCTTTATCATATATATCATTTTTGTGTTTTTTGAATTATTGTTTGCAATTTCCATAACATGAAACAACTTGTACACATAAAACATGTTAAATATATAAATCTATTTCTTTCTTTATTTTTTACCTCCTGCAGTTCTGTGATTTTCCTGGCCAACTCCAGTCCTGAAATTCATTAACAACAAAGCTATAAGGTAAGTGCAAAGATGTTTTTTGTTTAAATCCAGTCTTAAAATGTATTTTCATTCTCTAACTTTTAACTCATTATGAGAGTTTTTTAAATGTATTTGGTTAGTGCTCATGTCTGATAATTTAGTACAGCATTTTAGAAAACAATTGTAATTTAAAACATTTTAAACGCTCTTTAAATAAAATTTGATTTGGAGATTTTGAATTATAAAATGATTTAGGAATCAATTTTCGA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
uts2dmhn1/mhn1Homozygous♀-/- ♂+/-2 figures from Quan et al., 2021Fig. 8 from Quan et al., 2021
uts2dmhn1/mhn1Homozygous♀+/- ♂+/-text only from Quan et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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