Genomic Feature

tup1b

ID
ZDB-ALT-210914-2
Name
tup1b
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Dennis Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 18
Variants
Variant Type
Small Deletion
Variant Location
Chr 18: 12788177 - 12788194 (GRCz11) (1) Details
Nucleotide change
TGTCGTCTTCATCCCGTT/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
18 bp deleted in Exon 1 (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TCAAATGAGATTTTGCTCCCAGCTTTCTTTTCATAAGAGGGTGGAGCTACAAATGCCTATGTGTCAGCATAGTGGCAGATTTAAAACAGGACTTATGTTATCTCTGTGAAAAACTGAAAATGTTGTCAGCCTGTGGAGACTACAGCTGCTTCTCATTCAGGTCCGTTTGCTAATGAGGGAGAGATCGTCACTAATGGATGGGGCTTTTCCCTTCTGATGACATGTACAACGTCAAAAGTACAATAAAATTATTTCTGCAGACTGTTATTATATAAAAATTTAATTAATGTAAACACAACATTAATTCTTAATATAAATTTTGCATGATAGGTCCCTTTTAAAACTGCGTTTCATTTTAGCTATTGCCAATACACACTCAAATTAGCATTGCACACCAACAGCCATTACAATTCATCACAGAATTTCATAACACAGCTATATTTTGTTGTCTGTCATCCTATCTATCAGCCACGGTGTTTCTTATTTTTTCCTTCTAATGG
TGTCGTCTTCATCCCGTT/- CTTCATGAACCTGCACCTCTTGAATCCTGATACCTGCAGTCGGGTTCTGGCAGCCGCCCACAAGAGAAAGGGATCAAACGTGGCATTAGTTCAGCTCTGCGTCCTTCTGTCTACTCTTTCATCTCATTCGCTCATTCTTCTTCAATCTCTCCTCTGCTGCTCTTTCAGTTTAACCACTCCGATTTCTTCTCTCTGGACATCTGCCTGTTTTGTTTTTTTTTTCAAAGTAAATGAAGATTCACTGGTGTGTTTTGGAGGATTGCTCATCTTTGAAACTGTTTAGGATTATGCATTCTAGCATATTATGCATCCTTGGAAAATGTAATTTTCTACTTGCAAAGATCAGGTCATATGGGTTTCTGAAAAAAAAAAATATCTTACTTGCAGTTTGTAACGTAGCTACGTTACAAACCGCAAGTAAAATAATTTTCAAAATATTTTTCAAATGTAAAAACGTTTTAAAGTTTTTTTAAAAAAAGAAAAATTACTATAGCAATTTA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
slc7a5tup1b/tup1b (NHGRI-1)Homozygous♀+/- ♂+/-Fig. 5 from Colón-Rodríguez et al., 2020
slc7a5tup1b/+ (NHGRI-1)Heterozygous♀+/- ♂+/-Fig. 5 from Colón-Rodríguez et al., 2020
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Supplemental Information
Genotyping protocol
None
Citations