Genomic Feature
nz205
- ID
- ZDB-ALT-210819-2
- Name
- nz205
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Crosier Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 24: 26980579 - 26980591 (GRCz11) (1) Details
- Nucleotide change
- GGCCGAATGGAGT/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 13 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
ATTTGGAACAGTATAGCGCAGTGTTTCTCAACCACGTTCCTGGAGGACCACAAATCTGCACAAATCTATGTCTCCTTAACCAAACACACCTGATTCAGATCATTAGCTCAATAACAGAGACCGAAAGACCTGTAATGGGTGTGACAGACAATGAAGACATCCAAAACATGCAGTGTTGGTGGTCCTCCGGGAACGTGGTCGAGAAACGCTGGTATAAGGAAATAGAAAACAAAACTGACCTTTGCAGCCAGAACAATGAATGAAGAAGTTGATCAGATCCAACAGAGCCAGGTCTCGATCTTGCTTGTAGGATTCAATCCAATCATCAATGACCGACTGGAAACATTTGCAAAGCGAAACAACAGTCACAAAGCAGCACACAACCTCGAATAGACAGAAGTACAAAAAAAGACATATGTTTCACCTGCATGGCACTTTTGCCTTGTTTGACCACCTCAAACAGAGTGCTAGGGTCTGTGCCCTCTCCATTCTGATGGGCC
GGCCGAATGGAGT/- TCCTCCCGCCTTTATCAACCGGAGACCTTCTGGCCTTCTTATTAGCCGCCTGGGGGAAGAGAAAAGGGAATTAGGATGAGTGCATGTATTTAAGGTTCAAATAAACAGTTTGTCTGATTATAAATGATGCTCTTACTCCTTGTTTTCCAGGCCTGCCTCTCTTTTTCTTGCCTTTTCCAACCTCAGGATCATCCAGCTCACTGACGCTCATGGCCAGACTGATGGTGTCACCTTGACCGTCATTTGACGAATCCCTACACAGAGCAATGCACAGAGAGAAAGTTTTGAAACTTGTGTGTGTGAAAACACTTCAATTTGAATATCACTTTTTTTGTAATAAAAAATTATAACATGGAAAATTTATCAACAGCAATAAATAATACATAAGATACAATGCGTAAATTGAGCACATTCTATTAAATGTAGTCAAATATTAATTACACTGCAAATATATTACTAATTAACTTTAGATTAATCAAAGACTTTTAATTTATGTTTAA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| stag1bnz205/nz205 (WIK) | Homozygous | ♀-/- ♂-/- | text only from Ketharnathan et al., 2020 | Figure 2  from Ketharnathan et al., 2020 |
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Supplemental Information
- Genotyping protocol
- None
- Labudina, A.A., Meier, M., Gimenez, G., Tatarakis, D., Ketharnathan, S., Mackie, B., Schilling, T.F., Antony, J., Horsfield, J.A. (2024) Cohesin composition and dosage independently affect early development in zebrafish. Development (Cambridge, England). 151(15):
- Ketharnathan, S., Labudina, A., Horsfield, J.A. (2020) Cohesin Components Stag1 and Stag2 Differentially Influence Haematopoietic Mesoderm Development in Zebrafish Embryos. Frontiers in cell and developmental biology. 8:617545
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