Genomic Feature

cu202

ID
ZDB-ALT-210201-2
Name
cu202
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Horvath Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 1
Variants
Variant Type
Small Deletion
Variant Location
Chr 1: 19084327 - 19084337 (GRCz11) (1) Details
Nucleotide change
AAAGATTCACG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
11 bp deleted from position 198 to 208 in RefSeq:NM_001006077 in Exon 3 (1)
Transcript Consequence
Frameshift (1)
Protein Consequence
None
Sequences
Flanking Sequence
ATGGGAGACAGACATACGATTACCGGAATATTAAAATCAGTTTTGGAACCGATTATGGCTGCTGCGTCGTTGAGCTCGGAAAAACAAGGTAACCGTGTGCTATACATGTATTTACAGTTACATGTTTATATTACAAGCATGATTTGCTCACTATCTTTGGAGAAGACCATTAAACGAGAATGATATGAAATAAAAAAAATATTACTTGATGTACTCACCCATAAGTGGTTCTTTATGTGTGTCTTTTGTTGAACACAAAATATTTTGAAAAAAGTTGAAAGATGTAACCATTGACTACTATAGTGTTTGTTTTTCCTACTTGTTGATGTTCAACAGAAGAAAGAAACTTATGTAACAAGTAAAGGTTGAGGAAATTACAAAATATTTCAGTTTTGGGTGCTATCTCATTATCTTTGATGTACTTTTTCATTCAGAATATGTTATTTATTATTATATATTTTAGGGTATTGAGTCAGGTATCCTGTGAGCTTGTACCTCCA
AAAGATTCACG/- CCCCACTGAAGGCATCGTGTTTTTTAATCTGGAACTGTCTCCTATGGCATCACCAGCCTTTGAACCAAACAGGTTAACATTCTTGCAGTCTATTCTCTTATCTGTGTGTTTTCTGTTTCCCTAATGCCTGAGTGTCTTATTGTGTTCCTATGTGTGTGTGTTCTGCAGGCAGTCAGAGTTATTGGTGACCTTAAACAGACAGCTGGAGAGGTGCCTGAGGAATTCAAAATGCATAGACACAGAATCCCTCTGTGTAGTTTCAGGAGAAAAGGTGACATATGATAACATATACACTTCAGAGTTATTCATTCATTCATTTTCTTTTCAGCTTAGTCCCTTTATTAATCAGGGGTTGCCACAGCGGAATAAACCGGCAACTTATCCAGCTTATGTTTTACACAGCGAATACCCTTCCAGCTGCAACCCAACCCTGGGAGACACCCATACACTCTTGCATTCACACTCATGCACTACGGACAATTTAGCTTATACAAATTCAC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
exosc9cu202/cu202Homozygous♀+/- ♂+/-6 figures with image from Müller et al., 2020Fig. 2 from Müller et al., 2020
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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