Genomic Feature

as37

ID
ZDB-ALT-201110-2
Name
as37
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Hwang Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 20
Variants
Variant Type
Small Deletion
Variant Location
Chr 20: 48699518 - 48699522 (GRCz11) (1) Details
Nucleotide change
CGAGC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp deleted in Exon 2 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
GACAGACACAGCCGGAGGACTGCCAAGTTTGGAGCCGGTGGGTGACATGGTGTTCGGGTATGAGTACGGATACACGGGATTGTAGGAGATCTGCGGCGGGGAGGTTTTGCTGTCATACTGACTCGGCTGAGACAGGTTCCCAATCTTGTTTCTTAAAATGCGACTAATGGAGCTCACAGACGGAACATTATATTTATCACACACTCCGTCGGCTAGCAGTCTGTCGCGTATTTCCCAAGCAAATATCCCAGGGTCGCCCTGTTTATAATCCCTTATGCTTTTCACCACGTTTGGCGTTGTGACCCGAGGTTTACTCCCACCGATTGCGCCGGGCAAAATGGAGCCGGTCTCGTTGTATCTGGCCAGGATTTTGCTCACACATCCATGAGAGACCCTGAGTTGTCGACTGATGTCGCAGGGTCTGATTCCCAGCTGCGCCAGCTCCACAATCCGGATCCGGATGGCATTGGGAAGCGGCCGACCATTGACAAACACACCGC
CGAGC/- TGATTCACCTCCCCGTACGTCTGATCTGCAAGAAGGAAACACTGCGTTTTAAAATAGTTCTGCTCAACGCAGATTTATCATTAGCTATTAATGTGTAATGATTATCATTTTGAGCAACACTTTTTGCATTGTCAGAAAAACTGGTATAAAATCTGTCACTGAAGCCGCGCCCGTTATAAAGGTAGGCTATCACTGAAAAAACTAGGCTATTAATTGGATCAACAATTTTTTTTAAGTTAAGTGGTTGCAATCAATTTATATGGGCCGAATTTAAACAGAGAAGTTCAGATGAACATTAGTAAATTTAATTTGTTTAAATTCAGCCCATATAAATTGTTTGCACCACTTACCTTAAAACAATCAGTAAATCAAATGCATTTTTTCCAGTGTACTTCTGCATACAAAGGGTACAAATTAGCACCAAATAAATCATATTGGTATCGTAAAGGACCTTATCATTGTCTAAAGTTTCCATATATAGCCTACCATACATTTACATA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
pax1bas37/as37Homozygous♀-/- ♂-/-Fig. 5 with image from Liu et al., 20204 figures with image from Liu et al., 2020
pax1bas37/as37Homozygous♀+/- ♂+/-
pax1aas36/as36; pax1bas37/as37Complex3 figures with image from Liu et al., 20203 figures with image from Liu et al., 2020
pax1aas36/as36; pax1bas37/+ComplexFig. 5 with image from Liu et al., 2020
pax1bas37/as37 + MO1-pax1aComplexFig. 5 with image from Liu et al., 20204 figures with image from Liu et al., 2020
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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