Genomic Feature

zf3118

ID
ZDB-ALT-200928-14
Name
zf3118
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Charnay Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 12
Variants
Variant Type
Small Deletion
Variant Location
Chr 12: 8501085 - 8501601 (GRCz11) (1) Details
Nucleotide change
GAGACTCCGCAACAACAGCAATTGTTCTTTTAACCGAGTAGGAGGCCGTTTTTCTTAGTGATTTTGTGTAGGTGTTACTTTTCTATAGATGCTCACCTTCAAAGCACTTTTGCATTTGTGCTATTGGTATTGGCAAGCAATTATTGTCCTATCTGCTTTTTTGGGGGAAATAACAAATCGGTTTGATTTTCCCATTTATGTACAAAAGGATTATTGAGACCGCATTCCATGGCCTGTAGAGAAATTCATTGTGTCCCTATTTTTAGCTTAATGCAAAATTAGTATTGAAGTTTTAACTCTTAAGTGATGTGAAGCAAGGAAACTTTCACAGTATTTCCTATAATATATATTTTTTTCTGCAGACAGATTTCTTATAGTTTTGGCTGGAACAAAAGTACACTGTAAAAAAACCTGGATGCCTTAAATTTTTAAGCTGAATCAAATATACCTTATGTGTCTATTGAACTTATATGATAAATGTTAACCTGACTTAAAACAGCTTGCATAATTTATAAAA/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
517 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
ATTTTTGAGACTGATCTGACTCCACAAAAAGTGTGTACTACTGTGATCACATCACTTTCGTCTATGTGTATAAAACAACTTTAAGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAATCAAGTCATTTTATCATGGAATCTATTTTCTTTCCCAAAACCAAAGTGAGCCTCAATAAGTGAGAAAAAAGAAAGGTCAGAGGAATTGCTGTAACTTCTTTACGCATTTGGAGGGGAAAAAATAAAAGGAGGAAATGACCCAATTTACAAATCCGCTCCAGGAATGGAATGTCTCCCAATACTGGTCAGGCATATGACAATACGACATAAAGCAAGCTGTCAAGTTACGCCCACAAAAATTTAGATGAGGGTGAATGGACACAAACCTGCTCCAGAGCCAGCTGAGATCTGAAGACCAGCCGTGG
GAGACTCCGCAACAACAGCAATTGTTCTTTTAACCGAGTAGGAGGCCGTTTTTCTTAGTGATTTTGTGTAGGTGTTACTTTTCTATAGATGCTCACCTTCAAAGCACTTTTGCATTTGTGCTATTGGTATTGGCAAGCAATTATTGTCCTATCTGCTTTTTTGGGGGAAATAACAAATCGGTTTGATTTTCCCATTTATGTACAAAAGGATTATTGAGACCGCATTCCATGGCCTGTAGAGAAATTCATTGTGTCCCTATTTTTAGCTTAATGCAAAATTAGTATTGAAGTTTTAACTCTTAAGTGATGTGAAGCAAGGAAACTTTCACAGTATTTCCTATAATATATATTTTTTTCTGCAGACAGATTTCTTATAGTTTTGGCTGGAACAAAAGTACACTGTAAAAAAACCTGGATGCCTTAAATTTTTAAGCTGAATCAAATATACCTTATGTGTCTATTGAACTTATATGATAAATGTTAACCTGACTTAAAACAGCTTGCATAATTTATAAAA/- TTAAGTTATAACATGATAAACTTAGTTTAATATGTTAATAAACTAAAAACATATGTTGTCAGGACTAATTGATCATACTT  ...
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
en.egr2b_enhdzf3118/zf3118HomozygousUnknown
    		2 figures from Torbey et al., 2018
    1 - 1 of 1
    Show
    Supplemental Information
    Genotyping protocol
    None
    Citations
    TSV
    1 - 1 of 1
    Show
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