Genomic Feature

wh2

ID
ZDB-ALT-200518-5
Name
wh2
Synonyms
  • e7e8 (1)
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Stegeman Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 9
Variants
Variant Type
Delins
Variant Location
Chr 9: 9555112 - 9555391 (GRCz11) (1) Details
Nucleotide change
GTTTGCATGAGGAGGAGTATGTGCTGATGCAGGCCCTCTCTCTCTTTTCACCAGGTACTTCAAGTAAAGCTGAACATCACACACTTGAACACACATACACGCAAGCTGTCACTTTAACTCTGATATGTGCTTTAATCCACAGATCGCCCTGGTGTGACAGACCACAAAGTGATCGACCGCAACCAGGAAACACTAGCGCTCACCCTAAAGACTTACATTGAGGCCAAGAGAAATGGGCCAGAAAAAAAGTAAGAGCACTTTTTCATGTTATTTCCCTTTT/TTAGCCC
Variant Notes
Deletion removes exons 7 and 8, resulting in a frameshift and an early stop  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp inserted / 280 bp deleted (1)
Transcript Consequence
Exon Loss, Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
ATGTTCATGTAATATAATACAATATAACCATGCAACCATGTAAGTACTGCACTGTAAAAAAAAAATGCTGGGTTCCACACAAATAGTTCATGTTGTCCCAACACAAATTGATTAAGTTAATGAATCATTTTTACAAATTTAAGTTTCAGAAAAAATATAAGAATTGTGTTTCGACAAGTAGTTTAAAGAAGCAACGGTCAGTCTTTTAGGGTGTATTACAAATAGCTTTGTTTATTAAAAATAAAATTATCTGACCCATTTCAGTTTTTGGAGTCTCTTCTTATGTTCTGAAGAGTTGATTCAGATGTGTTTGAATAGGAAGAGGTTGAAAATGTGTACCATTGGTGTGCTTTCAGGAACAGGGTTGCACTATACATCCTGCATCACTCCTAACCAATTTTTATTTTTTTCCCCTTCATCCCTTTGCTGATGAACAGCTGGTTTTCAGCACCATCTGCTGGACCCAATGATGAATTTCCATTACACACTGCGTAAGCTGC
GTTTGCATGAGGAGGAGTATGTGCTGATGCAGGCCCTCTCTCTCTTTTCACCAGGTACTTCAAGTAAAGCTGAACATCACACACTTGAACACACATACACGCAAGCTGTCACTTTAACTCTGATATGTGCTTTAATCCACAGATCGCCCTGGTGTGACAGACCACAAAGTGATCGACCGCAACCAGGAAACACTAGCGCTCACCCTAAAGACTTACATTGAGGCCAAGAGAAATGGGCCAGAAAAAAAGTAAGAGCACTTTTTCATGTTATTTCCCTTTT/TTAGCCC GACTTAGCCTATCGTCTGATTTATCTCACTTCATGCTCCATAGTGCTCTAAATTCACTGTTAGTTCTGGCTATTCATTCACACTTTACATTTCTAAACCATTGGTTAATGTTTTTATTTAGCTGTTCATTTCATTGGTTGGATGGACGACTTGAAAAAGGCTGTAAAAAAGAAATCACTGTGTCAACTTGTTATGCTAAAAAGTTGATTAATTAGTGTTTCCATTAAAAATTTAAGCTGTTAATCATAGTTTTAGGTGTGTTGGAAAAAATAAGGAACGATGGCATGATAATCCATGATAAGGACCCAAACTAGGAGACTCGACAAGCTGAATTTTTTATTTAGATGTGTTGGTTGTTCTGCAGTCAAACAGCATCTTCACAAGAAGTCCACAGCACACATGTCTAGCAAGTCTAGAGTCTAAAACAAGTTTTAAATGAGTGTAACTTGTAGAGGTGTGAACCTATAATGGTCTCATGGTTCGGTTACGATTATCATGCC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
nr1i2wh2/wh2 (AB)Homozygous♀+/- ♂+/-text only from Salanga et al., 2019
nr1i2wh2/wh2 (AB)Homozygous♀-/- ♂-/-Fig. 6 from Salanga et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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