Genomic Feature
io011
- ID
- ZDB-ALT-200427-10
- Name
- io011
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- Zebrafish Unit - Cogentech Srl
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 15: 28686512 - 28686518 (GRCz11) (1) Details
- Nucleotide change
- ATGGAG/TGA
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 3 bp inserted / 6 bp deleted in Exon 1 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation: Met>Stop at position 25 (1)
- Flanking Sequence
-
CTCGTGCGGCGCTTCAACACACCATCCAAGCTCCATCCGCAGGGTTCATCCACCTGCATGCGGGATCCGCTTTCTTTCAGTTTCGCCTCTTGTACATTTCCTCGTGCTATTTATTATTCGCGCATCTTCCCAGCTTTTAGCAGTGAGAGTTCTTGCTGACCGCTGAGGTCATATATTGTTTTCCAGCAGGAGAGCGCCATCGCAGAGCCGCAAAACGAGGACGATTCCCACATCACTTGTTATTAATATCAGTCCAGCCTCGAGCCTCTGGATATTTATGCGTCTTTCGTTCTCTATCTAGCGCTGCTACGGAGGATCGACGCACCCCAAAAACCTTCATATCATCGTGGTTTCACATTTAGAAAACAGCATATCTGCGTATTGTTTGTAGGGGAGACGAGACCGAGCCTAAAGCTTCTTTATAAAAAATGATGGCCGGTGGGGCAGTGCAGCAAAACGGGATTTTCTCCAATCCGCATCATCACAATCAACAGCCGCAC
ATGGAG/TGA CTGATCCCCCCGATTCCCGCAAAAGACCCCTGGAGACCCCGACGGAGGCCAGCAGCACCAAGCGCACAAACACAGGAGGTAAGAGCCGAATGCTGGCAAACAAATAAGCGTCTCTTCCCAAAAGACGAGACAAGTGCTTTGATGTTTTGCTCCCAGTGGTGAAGATGAAAGTATGATCGCAGGTTCATTTTCGCATCTCGCCATTTAACGTGCTCGCGCTTCGCCAGACATGTGCATCAGAGCTTTTACATTCATATTTACAGTTCGCGTCCATTTTAAGTGGCCCTGAATTGGTGGTTGCGTCTAGTATTACGCACCGACGACGGTCGTTTACCAAACACGTATTCCTACATTAAAAGCTTATGTATGGGATAAAGGAGTAGTGTATTCCTAAATATAGGCAAATATAGTGAGCACGTACCTAAGCATTGGAAAACATGGCTCGAGCGTTTACGCATCCTTGTTATCACCGCAGATGACCTTGCGTTATGATCCGGTGC - Additional Sequence
- None
Fish
No data available
Supplemental Information
- Genotyping protocol
- None
- Pradella, D., Deflorian, G., Pezzotta, A., Di Matteo, A., Belloni, E., Campolungo, D., Paradisi, A., Bugatti, M., Vermi, W., Campioni, M., Chiapparino, A., Scietti, L., Forneris, F., Giampietro, C., Volf, N., Rehman, M., Zacchigna, S., Paronetto, M.P., Pistocchi, A., Eichmann, A., Mehlen, P., Ghigna, C. (2021) A ligand-insensitive UNC5B splicing isoform regulates angiogenesis by promoting apoptosis. Nature communications. 12:4872
- Baek, S., Oh, T.G., Secker, G., Sutton, D.L., Okuda, K.S., Paterson, S., Bower, N.I., Toubia, J., Koltowska, K., Capon, S.J., Baillie, G.J., Simons, C., Muscat, G.E.O., Lagendijk, A.K., Smith, K.A., Harvey, N.L., Hogan, B.M. (2019) The Alternative Splicing Regulator Nova2 Constrains Vascular Erk Signaling to Limit Specification of the Lymphatic Lineage. Developmental Cell. 49:279-292.e5
- Giampietro, C., Deflorian, G., Gallo, S., Di Matteo, A., Pradella, D., Bonomi, S., Belloni, E., Nyqvist, D., Quaranta, V., Confalonieri, S., Bertalot, G., Orsenigo, F., Pisati, F., Ferrero, E., Biamonti, G., Fredrickx, E., Taveggia, C., Wyatt, C.D., Irimia, M., Di Fiore, P.P., Blencowe, B.J., Dejana, E., Ghigna, C. (2015) The alternative splicing factor Nova2 regulates vascular development and lumen formation. Nature communications. 6:84798479
1 - 3 of 3
Show