Genomic Feature

hg92

ID
ZDB-ALT-200204-4
Name
hg92
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 7
Variants
Variant Type
Small Deletion
Variant Location
Chr 7: 71328344 - 71328347 (GRCz11) (1) Details
Nucleotide change
CAGA/-
Variant Notes
Deletion 4 bp in exon 2, cDNA: 338_341delTCTG,
p. Val113GlyfsX11
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp deleted in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CGTGTATATGAGAGGGAGAGACCTTTGCGCACTTACTGTAATATGTCTGAGAAAATCTAAATAATCAGCTCAGCTCTCAGAACATAGTAACCATAGTAACCTAGTAAGTCTATTCATGGACACACACACACACACACACACACACACACTATAATCAGCCGTTTTACTCCATAAAATGCTATAAAAAAAGCCCAAAACTAGTTTGCACAGGCCTATCTAAAGTGTTAATGCTGTCAACTGATGACCAACAGTAAAAATTACAAATTTTATCTCATGATTGTGGAACTAAACAAATAAAAAGCATAAATAAATGCAATAAAGCAAAGATAAAAGTGAAATAAACAGCGTTTATGGTTATGTAAATGTAAAAATGACACTGCAAAGGTATATGGAAAATTCTATGCAGTCTAACCTGTGTGGTCTTTCCAGAGCCGGTCTCTCCTACGAGCACAAAGCTCTGATGGCGGTTCAGGATGTCATTAAAGCGCTCTTTATACTCC
CAGA/- CGGGCAACTGCAGCCTCTTCTTGAGGATCTCGTAGTAGCGTGGCGTGTGAGGCAGGTTGGTGAAGGGGTTGATCTGCTGATGCATGCTGGCCTGCTTCAGAGGAAGGATTCCGCTTCCAGACACGCTGGAGCTGAGCGCCGCACTCGACGACTTGCTGTCTCTCTCTCGGTCGCGATCGCGGTCTCGGTCTCTGTCACGATCGCGCTCACGGTCCCGGTCACGATCTCGATCCTTTGATCGCTCATCCCGATCTCTGTCACGGTCCTTCCTGATGGGGAAAAAATAATGCATCCCTTAAGCTTAATCATCAAATGCATTTGGTTTGATAATTTAAGTTTCCTCATGAGCACACAAAATCTGAGCTCACAGAAATCTGCTGCTTTTTTTTAGCCAATCATTGAGTCTATTTATTTACTTAATTAAATGTGTAAATATCTCTTTATCACGTTTTTATATTAAATTCAGCAATATTTATTAACTAATATGCAAATGTCTGTAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
dhx15hg92/hg92Homozygous♀+/- ♂+/-5 figures from McElderry et al., 2019Fig. 5 from McElderry et al., 2019
dhx15hg92/+ (AB)Heterozygous♀+/- ♂+/-
dhx15hg92/hg92; tp53hg91/hg91ComplexFig. 6 from McElderry et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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