Genomic Feature

m1376

ID
ZDB-ALT-180724-3
Name
m1376
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Driever Lab
Current Source
Other Pages
Notes
Comment Citation
Sequencing the targeted genomic region in F2 animals revealed an indel (25 bp  ... Schredelseker et al., 2018
Genome Browser
Genome Build: GRCz11Chromosome: 10
Variants
Variant Type
Delins
Variant Location
Chr 10: 29891270 - 29891294 (GRCz11) (1) Details
Nucleotide change
CGAGTCCGGATAACTGTGAGTCTGA/GTTCT
Variant Notes
Sequencing the targeted genomic region in F2 animals revealed an indel (25 bp  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp inserted / 25 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TATCTAAAAGATTGTATTCATATGTACATTTTTTGTTGATGTAGTGTAATAATAGCTACTAGAGTAAATGTTCAGGAGAGCAAATGTCATCTTCAATATCGACATCATCTTCATTGTCGTCCAGCGTGTATCTGTCCGGGCTCATGCCGTTTTTACCGTCTGTGTTTTTCTCGTGCATTTCGCTTTCGCTCGTGTTCTCCAGCGATCTGTCTACATCATTCGGGGTTTTCTGGTCGTCTTGTGTTTTCCTCAGCTGTTTTTTATGCTTCATCCTCCGGTTTTGAAACCACGTCTTTACCTGCGTGAAGCAAATAAGTTTCAAATGTTTACTGAACTGGTGATGCGCTTTCTTAAAGTGAATGTAAAAATAAATAAATAAATATGTTTGAGTTTTTAAACAATATTTAACGCAATTACCTGTGTTTCCGATAGACTGAGAGCTGTAGCCAGTTCCACGCGCTCAGGTGTGGACAAATATCTCTGGATCTCGAACCTTTTCT
CGAGTCCGGATAACTGTGAGTCTGA/GTTCT GAACACTGTTCTGGCCTTTCTGCGTCTGCAATGCTTTCCTGGTAATTCCGGATGATGCTGAAATAACGCTGGCATCTGCATTCCTTTTGCAATGGAAACATAATGATAGTGGTAAATAAATATTGTTTTAATAGTTTGCAGGATAAAAAAACGAAAAACTTCTTATGTTGAAATTTGAATTGCATTTTATATCACACGACGCAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGGTAGAATAAATATCAGTGTTTTATTTTTTGTTAAAGTGGATTTTAAAAATTGAAAACATAACAACAGGCTACAGGAATAGAAATTATTTAGTCGATAGCTTATTTTTATTATTATTAATATTGTCATTATTATATTATCACCACCACCATCATCATAATATTGTTATTAGGCTATTATTATTATTATCATCATTATTATTATTATTAGCAT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
bsxm1376/m1376HomozygousUnknownFigure 5 with image from Choi et al., 2021Figure 5 with image from Choi et al., 2021
bsxm1376/m1376Homozygous♀+/- ♂+/-FIGURE 7 with image from Schredelseker et al., 20209 figures with image from 2 publications
bsxm1376/m1376 (AB/TL)Homozygous♀+/- ♂+/-6 figures with image from 2 publications5 figures with image from 2 publications
bsxm1376/+HeterozygousUnknownFigure 5 with image from Choi et al., 2021
bsxm1376/+ (AB/TL)Heterozygous♀+/- ♂+/-2 figures with image from Carstensen et al., 2022Fig. 4 with image from Carstensen et al., 2022
bsxm1376/m1376; tlv06TgComplexFig. 1 with image from Carstensen et al., 2022Fig. 1 with image from Carstensen et al., 2022
bsxm1376/m1376; y9TgComplexFig. 1 with image from Carstensen et al., 2022Fig. 1 with image from Carstensen et al., 2022
bsxm1376/m1376; zf15TgComplexFig. 1 with image from Carstensen et al., 2022Fig. 1 with image from Carstensen et al., 2022
bsxm1376/m1376; zf15Tg (AB/TL)Complex2 figures with image from Schredelseker et al., 20182 figures with image from Schredelseker et al., 2018
bsxm1376/m1376; zf15Tg/zf15Tg; zf177Tg/zf177TgComplexFigure 5 with image from Choi et al., 2021Figure 5 with image from Choi et al., 2021
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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