Genomic Feature

ihb815

ID
ZDB-ALT-171206-3
Name
ihb815
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Cui Lab
Current Source
Other Pages
Notes
Comment Citation
Homozygotes die between 7 and 15 dpf. Chen et al., 2018
The bloc1s1 ihb815 allele harbors a 17-bp deletion that includes the splicing  ... Chen et al., 2018
Genome Browser
Genome Build: GRCz11Chromosome: 22
Variants
Variant Type
Small Deletion
Variant Location
Chr 22: 10127306 - 10127322 (GRCz11) (1) Details
Nucleotide change
CCAACTCACCCTACATT/-
Variant Notes
The bloc1s1 ihb815 allele harbors a 17-bp deletion that includes the splicing  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
17 bp deleted in Donor Splice Site of Exon 2 (1)
Transcript Consequence
Frameshift (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CTTTTTTTCATACATTCAGGCCTGTGTTACTTTACAACACATAAGCAAGCTGTTTTCCATGAATATGGTAGATTTTTTATTCATTAGCCACTTTACCTGCACTAAACAGTAAAAGTATTTGCTCCACAATGTTTATGAGCCCTAATAAACTAAAAAGCAACGATAACAACAGTGTACAAATCAAGCAGCATCTTAGACTTTTATTTACAGGTACAAAAAACACCAAGAAGTCTCATATGATCATGTTTAAAATGACATTAAAAATTATTTTTGCACGCGACATTTCTTATGTGACCATACTTATAATAATGCACAAGATTTTGATACATTTGTTGTGAAAAGCCATTCACTTACATTCAGTCATGCAGTTTTAAGCTGCTTTCACAGAGTTTCGTCATAATGTACACACTTAAAGACGTGGATTATGACCACATTCATCACATGAACTCACCATAGAAATCCTGTGCATTAAGTAACACCTTAGAAAATATAAAACCTTT
CCAACTCACCCTACATT/- GAGATGATCCACCAGAGCTTCAGTTAAACATGTAGCAGCTGCTATTGCTTCTCTTCTTCGTCTTTCTGTAGATTACAGTAGCATTTTATAACATTAGGATTTATTTCAGGACATTATTATTTAGTGTAAAGTTTAACATCTTTAAACATAAATAAAGCGATTTCTAAATTCACGTTTTTGTAAAAATAATGATAATAATAATAATAAAAATAAATAAGTTGTTTGTTTTTGTATTGAAATAAACACTAAATCAAAAAAAATCAAGGTTTCTGAATATTTAATTTTAATGAACTTCTATATTTTGTTACGTATTTATTCATAATTTTTTGCATGTTTTGCCTTAATATTCTCCATTCATGCGATATATAAGTAGTCAGGAAATAAAAAAACAACGTCAAAGCAAAAGATTAGTGAACTCCAAAAATGACCTCTCAAAAACCTAAATCTCATTGGAATATCGAATGCAGGTTTTTATAAACGTTAACTTAAAAACTTGAACA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
bloc1s1ihb815/ihb815Homozygous♀+/- ♂+/-6 figures from Chen et al., 20184 figures from Chen et al., 2018
1 - 1 of 1
Show
Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
Show
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.