Genomic Feature
mn58
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 16: 30576400 - 30576406 (GRCz11) (1) Details
- Nucleotide change
- GCATGTG/TTA
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 3 bp inserted / 4 bp deleted in Exon 2 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
AATTTGTAGTAATTCTATAAATGATTAATTGAATGCATCTTTACTGTGCTAAACTAGCCCATAAAATGTATGCATCGATCTGCACATTGCAAAATTATCCACCTAATAAAAACATTTTTTTCTTAATTTGTTTCCTCTAGGTCAAATTTTCAACTGATCTACAATTAAGAGTGATCATCGATCCATCATGAACCCCAGCGCTGAATCTCCCTCCAGCATCCACACTGACTGCGCTGAGGTCCAGGTCCCTGGGCAGGTGTTTCTGGTCATCGCAGTGGCCAGTTTGAGCGAAAACCTCTTGGTGATTGTGGCTGTGATCAAAAACAAGAATCTGCACTCTCCCATGTACTGCTTTATCTGTAACCTGGCTGTGTTTAACACCATCTCTAGCTTCTCCAAGGCACTAGAAAATATACTACTGTTGTTTAAAGACGCCGGACGCCTGAACTCACGCGGCCCTTTTGAGCTGAAGATAGACGATATCATGGACTCTTTACTCT
GCATGTG/TTA CTTTCTAGGTTCAATCTTCAGCATCCTCGCCATAGCTGTGGATCGGTACATTAGCATTTTCCATGCGCTACGCTATCACATGCTCATGACCATGCGGCGTGTGCTGATCATTTTGTTCACTATATGGGTTTTGTGTGGCACCAGTGGAGCCCTAATGGTCGGCTTTTTTGAGGCAGCCACTGTAAAAATCTTCTTCATCGTGCTCTTCTTCACAGCTCTGCTCCTGATCCTCCTGCTTTATGTTCATATGTTCCTGTTAGCACGCCATCATGCAAACCGAATCGCGTCTATGCCTGGTGCTCAGGCGCAACACAGGAAAAGCGGCCTGAGGGGGGCGCTGACGCTCACCATATTGATCGGGGTATTCGTGGCCTGCTGGGCTCCGTTCTCCCTTCATCTGCTGATTATGATGATTTGCCCAGAGAACCCGTATTGTGAATGCTACCGTTCACTCTTTCAGCTGCATGTAGTGTTACTGGTGAGTCACGCTGTTATTGATC - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| mc2rmn58/mn58 | Homozygous | ♀+/- ♂+/- | Fig. 3 from Lee et al., 2018 |
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Supplemental Information
- Genotyping protocol
- None
- Lee, H.B., Schwab, T.L., Sigafoos, A.N., Gauerke, J.L., Krug, R.G., Serres, M.R., Jacobs, D.C., Cotter, R.P., Das, B., Petersen, M.O., Daby, C.L., Urban, R.M., Berry, B.C., Clark, K.J. (2018) Novel Zebrafish Behavioral Assay to Identify Modifiers of the Rapid, Nongenomic Stress Response. Genes, brain, and behavior. 18(2):e12549
- Lee, H.B., Schwab, T.L., Koleilat, A., Ata, H., Daby, C.L., Cervera, R.L., McNulty, M.S., Bostwick, H.S., Clark, K.J. (2016) Allele-Specific Quantitative PCR for Accurate, Rapid, and Cost-Effective Genotyping. Human gene therapy. 27:425-35
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