Genomic Feature

hg75

ID
ZDB-ALT-170809-8
Name
hg75
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 25
Variants
Variant Type
Small Deletion
Variant Location
Chr 25: 36289763 - 36289773 (GRCz11) (1) Details
Nucleotide change
GACACATAGAG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
11 bp deleted in Exon 2 (1)
Transcript Consequence
Frameshift (1)
Protein Consequence
Amino Acid Substitution: Leu>Arg at position 61 (1)
Sequences
Flanking Sequence
ATTCGGGTTATTCAGTGTGAAATCATCCTGGAGCTTTCTTTGCTACATTTCTTAAATTATTAATAACACACACAAAAAAAACACATTTAATAAAAGCAGGTTAAAGTAGTAAGGACAGATTAGTATTACCCAAGTAATCGACAATTTATGTGTGTGTGTGTGTGTGGTGTGTGTGTGATTTTTTAAAAATCTTTTAATTATACAATTTTCTAGTTTTAACTTTAACATTATTTGTTTTTTTAAAGGTATAGTTCATGCAAAAAAGTAACAAAATGTGTCAGTGTATGTACAATTCATGTGGTGATGCTTATATTTATTTTGAAAGAGCTTGAAAAAAAAATCTAAATTTTTAGCTGGGGACCTCTGGATGCATCAACATAACTAAATTGTTTATTATAATTTAATTGTGAAGCTCTAAAATATCAAATGAGTCTATGTGTACATTTCTAAAGCGGACGATCTTCCTCTTGTAGCCGTTTCCTGCCACCAGGTCACTTTCT
GACACATAGAG/- GACACACGTCTTGTTACTGAGACAGAAGTCGACAACACCGAGCTCCTCCTCGAAGATCATCTTTACACTTCCTGAGAACAAAGACAACATACAGAGACATCAATAAATTCTTTGAGAAGACAAGATGCATCACAAACACTAGACTAACTGTCATTATACTAATTTTTCAAATTTAAAACACACAACTAAAAGCAAGGGATAAATAAAAACTAGTATAAAAATGAACTAGTGTTAAGGTGTAACTAGTGTTAAATGTATGATTAATTACCATGGTACAATTTTTATGTAACACTAAAAACTTTTTTAACCAGAATTAAAGTCTTAAATGTTAAATTAAAATATGAAATCAGCCACAAATATTAAACAACATTCTGTTAAAAGCAATACAAATTCAAATGAAAATGTAAATTAAAACACTTTATATGTCACTCTAATCAAAACAACAACAGTAAAACCTACAATAATTAAAAGTAAATTGTCCAAATACCATTTGGATGTCA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
faap24hg75/hg75Homozygous♀+/- ♂+/-Fig. S7 from Ramanagoudr-Bhojappa et al., 2018
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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