Genomic Feature

hg39

ID
ZDB-ALT-170801-9
Name
hg39
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 6
Variants
Variant Type
Small Deletion
Variant Location
Chr 6: 43230607 - 43230619 (GRCz11) (1) Details
Nucleotide change
CCAGATCCTCTCG/-
Variant Notes
13 bp deletion in exon 6, cDNA: 696delCGAGAGGATCTGG, p. E233WfsX3.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
13 bp deleted in Exon 6 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
GAGCTACATTACAATTGTTTACCCTCAAAAGTACAAATAAAGAGACTTCTATGATAATTCAGACATCAAAAGCATGCACATCACAGTCACTAGCTGTGTTTCCATCCAAAAATGTCAATTAACCTTTTGCGAAAAACTGGATTATCGCATAAAAGACGTGCAAATAAAGCAGTGTTTCTATTCAAGGAGTCAAAGCAAACAAAATCGTCACTTCCTTATTATTTATGTGCATTGTGGTGTTTCCATCAACTGATTTTTTATGCGCATCTCCAAAATGTGAATAAAATAGGTGGATGGAAACATAGCTACTGTCAGTATGAATTGCAATTTAATTAAAAAGCTTAAAAATCAAAATGAAAAAAATGAGCTGTAAGATGTTTCTCTACATATTTTCAATCACAATGTTTTTCCTCACCTGTGTACTGGGCTAAACCCAACTCATAGACGAGTTCCAGCAGGTGACCAGCATGATTTCCAACCAGCATCTTCTTCAACTCCAC
CCAGATCCTCTCG/- CCTGAGATTCCAGCCAATCCTCTAGCGTTTTCTCTTATTGCCTCCAAAGTCTCTGGTTCATGTTGGCCAGGTTCAGCTGCCACTCGTCCATAGAATCTACAGAGCAACCAAACCTCATAATTACTTTACCCTCGTACTGTTTCAAACATGCATGTGGATCAAAGACGAGAAGTTCCTTGTTGTTAAATTAATAGTAGTGATGGTGAAATGAAGCTTTCTGAACCAGTGAAGCACTCGACTCAATTGTATCGGAAAAAGGTTCGTTATTCGAAGCTTTCTAAATCAGAGCTCGATGAGGACCTCTTCTGGTGAAAGTGTGGGAAAGCACTGTGTTGCCATAATGTCAAATTTTCACAACTGACCAACTCATTCATGTAGTAATACAACAACAGCAATATAAACAAATTACTTAATTACTGTAGTTTTTACACAAGATATATTACATTACACAACTGATGATTGTAGTAAAATCCAAGGTATTCAAAAGTTTATCATAATAC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
trnt1hg39/hg39Homozygous♀+/- ♂+/-2 figures with image from Giannelou et al., 2018
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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