Genomic Feature
ubs19
- ID
- ZDB-ALT-170601-1
- Name
- ubs19
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Affolter Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 10: 31713539 - 31713548 (GRCz11) (1) Details
- Nucleotide change
- TGTGATCCAA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 10 bp deleted in Exon 2 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation: 391 AA missing (1)
- Flanking Sequence
-
GGTTTAATACAGGTGTACAGGTTACGTGTCGATTTTGTTGCCTATATTTTTTGTCTTTGCAGGTGATCTAACCAACATTGAATATTTTTTTAGGAAATATGTTTCTTAAGATGAAAGGCAGCTTAGTGGAGCAGTGTGTAGCACGACTTACAGCAAGAATGTCACTGGTTTGAGCTGGGTCAGTTGGCATTTCTGTGCAGAGTTTGCATGTTCTTCCCGTGTTTGCGTGGGTTTCCTTCAGGTGCTCCAGTTTCCCCCACAGTCCAAAGAATAAGCTAAATTGGCCATAGTGTATGTGTGTGAATGCAAGAGTGTATGAGTGTTTCCCAGTGTTGGGTTGCAGCTGGAAGGGCATCCACTGCGTAAAGCACATGGTCTTTCAGTCAGCGAGTTTAATGTCAGTATTTAGTGTTTGGAGGGTTTTAATCAGATTTTTGTGTTTGTTTTTTTCTCTGTGCAGGTGAGCTGGCCCAACTTGTGTTGCCTTATGAAAATGTGGA
TGTGATCCAA/- GGGAAGATGGTGGTGCTGCAGGCGTCATATTCGAGTACGGACTTTCAGAAAAACACAGTCGTCTGGAACTACATGCAGTCTGCTACCAGCACTGAAATGGTGATTGCCTTTTACTGTTTATTACTATATATTTGCAAAGTGTAAATTTGTATGTGGCAGTGACAGCCCAGCAGTGTAACATGCACAAATGTACACAAATAAGTTCTGCTTTTTAATATAATACATTTTATTAACTCATAACACACTTTATTTTTCTCAGATTATTTGATAAATGCTCTTTAAAATGATAATTTGTTTAGAAAATATAAATTAATTATGCTTGATTTGAATTAAACTGCCACACTGCTGAACAAATTTAAATAATACCTAATAAATAAGAATTTTGTGTAAAATTAAATATTGCTATGTATGAACTTATAAAAAAAAGTACAAATTGCTTATTATTAGCATTATAATTTGAGTCTTTAGTAACTAATAAGCAATTTATTAATTATTAGTAC - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
esamaubs19/ubs19 | Homozygous | ♀-/- ♂-/- | text only from Sauteur et al., 2017 | ||
esamaubs19/ubs19; s916Tg; ubs18Tg; ubs3Tg | Complex | Fig. 3 ![]() | |||
esamaubs19/ubs19; ubs16Tg | Complex | Fig. S4 from Hübner et al., 2018 | |||
esamaubs19/ubs19; y1Tg | Complex | Fig. 5 ![]() | 2 figures ![]() | ||
cdh5ubs8/ubs8; esamaubs19/ubs19 | Complex | ||||
cdh5ubs8/ubs8; esamaubs19/ubs19; s916Tg; ubs18Tg; ubs3Tg | Complex | 2 figures ![]() | |||
cdh5ubs8/ubs8; esamaubs19/ubs19; y1Tg | Complex | 2 figures ![]() | 2 figures ![]() | ||
esamaubs19/ubs19; s916Tg; ubs18Tg; ubs3Tg + MO1-cdh5 | Complex |
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Supplemental Information
- Genotyping protocol
- None
- Hübner, K., Cabochette, P., Diéguez-Hurtado, R., Wiesner, C., Wakayama, Y., Grassme, K.S., Hubert, M., Guenther, S., Belting, H.G., Affolter, M., Adams, R.H., Vanhollebeke, B., Herzog, W. (2018) Wnt/β-catenin signaling regulates VE-cadherin-mediated anastomosis of brain capillaries by counteracting S1pr1 signaling. Nature communications. 9:4860
- Sauteur, L., Affolter, M., Belting, H.G. (2017) Distinct and redundant functions of Esam and VE-cadherin during vascular morphogenesis. Development (Cambridge, England). 144(8):1554-1565
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