Genomic Feature

sq302

ID
ZDB-ALT-170522-3
Name
sq302
Synonyms
  • m10 (1)
Affected Genomic Region
Construct
None
Type
Allele with one insertion (1)
Protocol
embryos treated with zinc finger nuclease
Lab of Origin
Korzh Lab (closed down)
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 8
Variants
Variant Type
Insertion
Variant Location
Chr 8: 2322388 - 2322389 (GRCz11) (1) Details
Nucleotide change
-/TG
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
2 bp inserted in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
None
Sequences
Flanking Sequence
TTATAACATTGTAATTAATTGCGTATAGTTACTTAATACATTTTAATTAAAAGAAAACTAAAGAAAAATATAATTACACTAGTTAAATAATAATAATTCTAAAATAAAAAAATATTACATCTAAAAATATAATAAAATAATAATGCTTGCACTAATAGTAATAATATTTTTATTGTCCTAATAAAACATAATTGATTAGATGAGAGCTTCTAGGGATATAATTTGTCCTTATACACTAACAAAAAAAGTTGGGTCAAATATGTACAAATTCAACTGTTGGGTTAAAAAAATAATTTAATTGAAAAAAAAAAATCTAATGATTGGTTTCATCCATATTTAACCAAGTGTTGGGTAAATACAATTCAGAGCATGAGCTTAATAAATATATGCTAGATCTGTGTGCTTTTAATATAAGATATGCAGACAGATGTTGTTTTCTCCTGCAGGGTGTGTGTGTGTGTGTGAGGGGCCATCATGAGCCGTCCGCCCTCCATGCAGCCA
-/TG CAGACGTGCGGCCCCTGGGAACTTAAGGAGCGACTGGGAACCGGAGGATTTGGCAACGTCACTCTCTGGCAAAATAAGGTCAAATATTGCTCTGCTCAAGAACATCACATTCATACTTTGGGGGAAATAAGTGTTGAGCATGTCACTATTTTTCTCAGAAAACATATTTCTAAAGCTGCTGTTGACTTGAATTTTTTACCGGATGCTGTTAACAACCAAAGAAATCCATATATGCAAAGAAAACAAATCTAATTAGTGTACACGTGAAGTTCTGTGTAATAAATTGAAATGACACAGGTGAAAAGTATTGAACACATGAAGAAAGGAAGGTGTAGTTCAGCAGTAAAAGCCCAGACTGCAGCTGAAATCTCTCAGTAAGTCTTCAGCAACCCTCTGCCCTTCCTCAGTGTAAATGAAGATCAGCTGCTTCAGTCCAACATTAGCAGGAGGATGAAGATGAAACCAGGGTGCACATTTCAGCAAGTCAATGATCCAAAACAC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
ikbkbsq302/sq302Homozygous♀+/- ♂+/-2 figures with image from Shen et al., 2017
ikbkbsq302/sq302Homozygous♀-/- ♂-/-Fig. 5 with image from Shen et al., 20172 figures with image from Shen et al., 2017
ikbkbsq302/sq302; sd2Tg; y1TgComplex2 figures with image from Shen et al., 20172 figures with image from Shen et al., 2017
1 - 3 of 3
Show
Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
Show
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.