Genomic Feature

uc27

ID
ZDB-ALT-170314-6
Name
uc27
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Draper Laboratory
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 5
Variants
Variant Type
Small Deletion
Variant Location
Chr 5: 44945065 - 44945071 (GRCz11) (1) Details
Nucleotide change
GTAATTG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp deleted from position 122 to 128 (1)
Transcript Consequence
None
Protein Consequence
Cys>Stop at position 41 (1)
Sequences
Flanking Sequence
GGCCTACCACTTTTTAACATGGGTGACGGGCAGGACATTTTAAAATCAAATCAGGCAGGATTAAAACAAGCTAATATGAACCAAAATATAACAAATGGGCTGCAGCTTTTATAAAACAATAGCAGCCTTAAACACCCTTTATTGTGGTGTTTGCTCGATGTGTTGTGATATCATGAGGCGCTTTGGGAGTCTCAGTGTGAAGGAGCGGACATCATCATCATCATCATCCTCCTCGTCTCCCACGAGCTCTGGAATGCACAGGTTCCTCGTGCCAACACATGCGCCCATTGTAACGTTATCAAACCTCAGACCCTATTTATAAGCGCCGATAATCCCCATTCAGAGCAGAGCAGACTGGCCATCACCATTAGCTGTCAGGATGAGTGAAGAAGAGCAGACTAACGGGTCGCTGTCCATCAGGAAACCGTCCCGGATGCCGAAGTGCTCTCGCTGCAGAAACCACGGCTTCGTGTCACCGCTGAAGGGCCACAAACGCTTCT
GTAATTG/- GAGAGACTGCCAGTGTCAGAAATGCAGACTCATCGCCGAGAGACAGCGGGTCATGGCTGCCCAGGTAACTTAGACATCCTCGACAAGGCCATGAGAGGTCATTTTGTATTTTGTATAACGTTTTAAATTATTAAATATTATTACCTCGTATCTACAGCCATCACGTGTTTAATTTCGTGTGCGTTGTTTACAAACACAAGTTGTATTTAAGTATTACTATAACACCGCCGTCGAGTTTACAAATAATTTAATTGTTTGCTACAATTGTCTTGATAAATTGTTTATATTCATAGTAAAGTTTGGTCGGTTAGCTACATTGTTGACTGCTTTGGCTAGCTGCAGTTTGGCGCCGTTTTTATCAAGACAGTGACGTTACAAAAACACCATTTATTTTCATGTAAAGTTAACTTATTACAATTTATTTAAACCACGTTTAAATGCCTCGTGCTAATTTTGTTACCTAGAGGGTGAATTTGGGGACTTCATTTGACTTATTTTGT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
dmrt1uc27/uc27 (AB)Homozygous♀+/- ♂+/-2 figures with image from Webster et al., 2017Fig. 7 with image from Webster et al., 2017
dmrt1uc27/+ (AB)Heterozygous♀+/- ♂+/-Fig. 7 with image from Webster et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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