Genomic Feature
sa23054
- ID
- ZDB-ALT-131217-16884
- Name
- sa23054
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation
- Protocol
- adult males treated with ENU
- Lab of Origin
- Stemple Lab
- Current Source
-
Zebrafish International Resource Center (ZIRC)
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European Zebrafish Resource Center (EZRC) ( order this ) - Other Pages
Notes
Comment | Citation |
---|---|
Homozygous viable adult. | England et al., 2020 |
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 17: 21792042 (GRCz11) (1) Details
- Nucleotide change
- T/A
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- A>T (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
GTGCGAGTAGTAAACCGGATGAGGGAAAGTGAGCAGCGGCTGGCTTACAGGAACGTTGCCCGCTGTGTTGGTGCTCTCAGAGGCCGAGTTCTCGTGATACAGGATGGGTACTCTCACAATCCTTTGTGCTGCTGCGTGGCTCAAGTTGGCGGCCTCCAGCTCTGCGGCCAGCTGACGTTTCCATTTGTTTCTGCGGTTCTGAAACCAGATTTTCACTTGAGTCTCTGTGAGGTGAAGGGAGGCAGCAAGGCCCGCGCGCTCCGAGCTGCTGAGGTAGCGTTTCATGTCGAAGGTGGACTCCAGCTGGAACACCTGACTCCGCGAGAACACCGTGCGAGTTTTCTTTTTCCGGCAAGGTTTCTTGTCAGCGCCGTCGTCACTCTTCTTCCAGTCGTCTATGCCGCCTTCTTTTTTACCGTCTTCGGTGTCGCTCTCCTCGAGGACAATCTCGTCGCCACTTTTGTTGTCGTCTTCATCGTCCTTGGCGTCCGGATCTGATT
T/A GAGCACAAGCTCGGGGGAATCTCGGTCGGTGCCTGTGGTCGGCGAAGAGTCCCTCGCTTTCTGTGCTGCTACAGTAATAGAGGCCAAATTAGCATTCGTTTTCTTTCAGAAACATATTCATATCAAGTTTCACTGGTCGTGTCACTTTGCCACATGACAGGTGCAAACAATTGTGATTCGCACTGTCCAAAATCTCAGTGTTTTTAAAACTTCAACCCTGCATTTTAAACTAAAAACATGCGAGCTTTCATATTTAAAGAATGATAACAGCTGCTGTTATGTTTGATACTTAGCCTATATTATTTATAATCTGTCGGGAAACAAGCTATAGGCTGGCTTGCTACAGTGCATGCTTATGCACCAATATTTTATATCAGAATCACGCTATTAATTATCATAAATAATAAATCAGCGCAGATTACTCAACAAAGCAGTTATGAGATAATAAATCTTACCTTCTGTTCTGTGAAGATGCGCGGATGCACTGAGTGTGTACGGGT - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
hmx3asa23054/sa23054 | Homozygous | ♀+/- ♂+/- | Figure 5 ![]() | Figure 8 ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Haws, W., England, S., Grieb, G., Susana, G., Hernandez, S., Mirer, H., Lewis, K. (2023) Analyses of binding partners and functional domains for the developmentally essential protein Hmx3a/HMX3. Scientific Reports. 13:11511151
- England, S.J., Cerda, G.A., Kowalchuk, A., Sorice, T., Grieb, G., Lewis, K.E. (2020) Hmx3a Has Essential Functions in Zebrafish Spinal Cord, Ear and Lateral Line Development. Genetics. 216(4):1153-1185
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