Genomic Feature
ibl30
- ID
- ZDB-ALT-120611-3
- Name
- ibl30
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one insertion (1)
- Protocol
- zinc finger nuclease
- Lab of Origin
- Haramis Lab
- Current Source
- Other Pages
Notes
| Comment | Citation |
|---|---|
| rnf2 knockout was generated using zinc finger nuclease. This mutation ... | ZFIN Staff |
Variants
- Variant Type
- Insertion
- Variant Location
- Chr 2: 23357630 - 23357631 (GRCz11) (1) Details
- Nucleotide change
- -/GTAT
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 4 bp inserted (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
TACAACAAAAATATTTTATTTCCTGAAAATGTTGTCTTGTACACAGCCTTATAGCATAAATGTCTGTCAAAAGAAGCTAGTAGAGGGTTTTGACCAGTAACTAAATAAAACTATTCCTTATCACAACTAAATAAATGGACAAAAAAAGAAAGATTTATCCAGTTCCTATTACTAAAAATATAATCCCATCCTTCATTTTCACATTTGAGGTGATACGGATACACTTTACAATAGGGAACCATTTCTGTTTCATGTCTATTTTAGGCTGTTTATTTGTATTTTCATTGCCTAATTGTCATATCTCCTGTGTTCTTTCAGGAATAAGGAGTGTCCAACATGCAGAAAGAAGCTGGTGTCTAAGCGCTCTCTTCGTCCAGACCCTAACTTTGACGCTCTGATCAGTAAGATCTACCCCAGCAGAGACGAATACGAAGCCCACCAGGAGAGAGTGCTGGCCCGCATCAGCAAACACAACAACCAGCAGGCGCTCAGCCACAGTAT
-/GTAT CGAAGAAGGCCTAAAAATCCAGGCCATGAACAGGTTTGCTGTTTAATATGAGCCATTTTGTCACAACCAATTTATATTTGTAGAATCAAAAATGTAGGTAATTTTTTTTAGTTTGCGGCTTTGTTACAAATCCTCTTGTTTACTGTTAACATGATAAAAATAGCTTCTTATTAATGTATAATCATCTTTTAACAGTTTACTGACTGCTCTGAGGCAGCTTTCTTTTAAGTGTAAAATGTGAATTTTGCACTTATTTTTTTATTTCTTCATCCTGTTTTGTTCCTGGGTTTACACCAATTCTCCACCGGGGCACTGTAGACTGCAGCGGGGGAAGAAGCATCAAATTGAAAACGGCAGCGGGGCAGAGGACAATGGGGACAGTTCACATTGCAGCAATGCATCAGTGCACAGTAACCAAGAGGCTGGACCCAGCATCAAACGAACCAAAACCTCAGATGACTCTGGACTGGACATGGACAATGCCACTGAGAATGGAGGAGG - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| rnf2ibl30/ibl30 | Homozygous | ♀+/- ♂+/- | 11 figures  from 2 publications | 15 figures from 2 publications | |
| apchu745/hu745; rnf2ibl30/ibl30 | Complex | Fig. 8 from van der Velden et al., 2012 | Fig. 8 from van der Velden et al., 2012 |
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Supplemental Information
- Genotyping protocol
- None
- van der Velden, Y.U., Wang, L., Querol Cano, L., and Haramis, A.P. (2013) The polycomb group protein ring1b/rnf2 is specifically required for craniofacial development. PLoS One. 8(9):e73997
- van der Velden, Y.U., Wang, L., van Lohuizen, M., and Haramis, A.P. (2012) The Polycomb group protein Ring1b is essential for pectoral fin development. Development (Cambridge, England). 139(12):2210-2220
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