Genomic Feature
sa5
- ID
- ZDB-ALT-070807-6
- Name
- sa5
- Synonyms
-
- sa0005 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (1)
- Protocol
- adult males treated with ENU
- Lab of Origin
- Stemple Lab
- Current Source
-
Zebrafish International Resource Center (ZIRC)
(
order this
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European Zebrafish Resource Center (EZRC) ( order this ) - Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 9: 7526258 (GRCz11) (1) Details
- Nucleotide change
- C/A
- Variant Notes
-
the premature stop codon is located at the beginning of the 2B alpha helix
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- G>T (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
TGGAAGTATTTCACACCAGACGAGCACATTTGAACTTTATTTAATAGGATAGTATTCATGGCAAAAATATGAAAAGTGACCTAAGTCATGGCTGGGCACCATGGACAGCCGCTGACTTGTGGCGCTGGTGTGCATACACTGATAGGAATCTATCTTTATAATATCAAATGCATGGTGCTGCGTAGTTCGGTCTGGCACCAAGCAGCGCATTCGATGTGTGACCCCCTTTACTTTACTACGAGGGAATGCACAATAAGAAAGCCTCACCCCGTACTCATTATTCTGTTTCAGTTGTAAGTACATCAACATACTGAAATAAAAGTCTCAGCAACTTCCGGTTCATGAAGAATTTAAAGGGGTAGATGGTAAAATTGAATGCTATTGTGCATTGATGTGGATGCTAATGTAACTATCATGTTTCTAACTGGCCGTACAGCCTTTGAAATGTGTGATCTAGCTGAATCTATCTCTGATACAGACCTTAGACTTATACCAGTCCT
C/A GGCCTCGCTGATATTCTTGGCAGCGATAGCCTCGTACTGCAGGCGAATGTCTCTGAGGGCCGCAGTCAGGTCTGGTTTGGACATGTCCATTTGGATTTGCACCTGACTCTCCTGCATTTGGTTCTGCAGCTCACGGATCTCCTAAAGGAAAAAGGCAAACACAGATACATAGCTTCAAAAGGCACTAATTAGCGTTTTGTTTGGCGAGTGTGTGTTTTGACCTTATTTATTTAGACATGCACAGTTTATTGAGGCATTATAATGTTTGATGTTTGTATACACACACGCTAGACTGACATACAGCAATTCTATTGACACACTATGCATGTTCACATCATCATATTTTATGCTCCATAGTGAAAGGTTGTCCCTGTCAGTCAATTCAATATCCTCCTGAGACCCAAAGAAATGTTTTTCTTTTTAAAAAAAAAAAAAAATCTTGTTAAAAAAATCTACAATTTTGAGTTTTTACAATTTGTTTTTATTTTTAATTTTACAGC - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| desmasa5/sa5 | Homozygous | ♀+/- ♂+/- | Fig. 2  from Ramspacher et al., 2015 | Fig. 1 from Ramspacher et al., 2015 | |
| desmasa5/sa5 (TL) | Homozygous | ♀+/- ♂+/- | text only from Busch-Nentwich et al., 2012 | ||
| desmasa5/+ (AB) | Heterozygous | Unknown | |||
| desmasa5 | Unknown | Unknown | |||
| desmasa5/sa5; hu6531Tg; zf350Tg | Complex | Fig. 4 from Ramspacher et al., 2015 | Fig. 4 from Ramspacher et al., 2015 | ||
| desmasa5/sa5; twu34Tg | Complex | Fig. 3 from Ramspacher et al., 2015 | 2 figures from Ramspacher et al., 2015 |
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Supplemental Information
- Genotyping protocol
- None