Genomic Feature
j23e1
- ID
- ZDB-ALT-070423-3
- Name
- j23e1
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (2)
- Protocol
- adult males treated with ENU
- Lab of Origin
- Stephen C. Ekker Laboratory
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 8: 49989209 (GRCz11) (1) Details
- Nucleotide change
- C/T
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- C>T in Exon 3 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Gln>Stop (1)
- Flanking Sequence
-
ATTTCCCAAATGACGTTTAACAGAGCAAGGGCATTTTTACAGTATGTCTGATAATCAGTATTTCTGATTTAAAAAAAAAAAATCAAAACTTGCTTTTATTTTGGCCGAAATAAAACAAATACGACTTTCTCCAGAAGAAAAAAAATGATAGGAAATACTGTGAAAAATGTCTTGCTCTGTTAAACGTCATTCGGTAAATATTTGAAAAAGAAAAGAAAATCACTTCAACTATACATTAAAATTAAGACACAAAGGCCATGCTAACAGAGAAGTTTTCTGAAAATAGAATCATCCTGTTACAGTCTTATTTATCACGTCTTCATGATCTCTGAAATTAACTATTTAAACAAAACACAAACTAGTAAAATGAAAACGATAATAAATGTACAATTTCAAAAATATGTCATTTTCTTCTCATTTTCTGGCTTGCAGGTGTTGGTATTGATGGGGGAAACAGTAAGGACTGGGAAAGCAACTCCAAGTGCATCCACCTGATCAAA
C/T AAACAGGAAAAGTGCAGGCCCTGGATGAGGAGATCCAGAGTAAGTGCTTGGGGTTACAAATGGGGTTTATTTTACTAATCCAGACGGAAGAATGATGGTGCGTTCACAGCAGATCCGGATAGACTCGTGTGTGAATGGTTCCATAAGATGAATGGATTGAATAATATGAGTGGATGAATGGATTGCACTAGAGATCTGTCCGGGACTAAATTTTGAATCCCGCTCCCCCCCCGCACACGCCAGATTTTAGCCCGAACCCGACCACTCCCGCTTATATTAAGCATTTGTTAAGCATTCCCGCTGCCCGCCCCGCCCCGTTTTCTACCCGCCGCGCCCGATCCCGCTGGAAAGAGCGGGGGGAGAACAAAACCGAAAACCACCCAGCTATACAGAGACCAGACAACCTATTACAAGCTGTCTGTATAAACACACACACACATAGCACCAAGCACACACACACAGACAAAGCTCTCTCTCTCTCTTATTCGTGCGCACTAACA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| gfpt1j23e1/j23e1 | Homozygous | ♀+/- ♂+/- | |||
| gfpt1j23e1/j23e1 (SJD/C32) | Homozygous | ♀+/- ♂+/- | 3 figures  from Yang et al., 2007 | Fig. 5 from Yang et al., 2007 | |
| gfpt1j23e1/+ (AB) | Heterozygous | Unknown | |||
| gfpt1j23e1/+ (SJD/C32) | Heterozygous | Unknown |
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Supplemental Information
- Genotyping protocol
- j23e1.pdf
- Hultman, K.A., and Johnson, S.L. (2010) Differential contribution of direct-developing and stem cell-derived melanocytes to the zebrafish larval pigment pattern. Developmental Biology. 337(2):425-431
- Yang, C.T., Hindes, A.E., Hultman, K.A., and Johnson, S.L. (2007) Mutations in gfpt1 and skiv2l2 Cause Distinct Stage-Specific Defects in Larval Melanocyte Regeneration in Zebrafish. PLoS Genetics. 3(6):e88
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