coding_sequence_variant

Term ID

SO:0001580

Synonyms

• coding sequence variant
• coding variant
• codon variant
• codon_variant
• Jannovar:coding_sequence_variant
• Seattleseq:coding
• snpEff:CDS
• snpEff:CODON_CHANGE
• VAAST:coding_sequence_variant
• VEP:coding_sequence_variant

(all 10)

Definition

A sequence variant that changes the coding sequence.

References

• http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp
• http://snpeff.sourceforge.net/SnpEff_manual.html
• http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

Ontology

Sequence Ontology