ZFIN Publication: Newman et al., 2019: Genes / Markers

Newman et al., 2019 - Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Molecular brain 12:43 Full text @ Mol. Brain

223 Genes / Markers
Marker Type	Symbol	Name
Gene	abcb8	ATP-binding cassette, sub-family B (MDR/TAP), member 8
Gene	abcc5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5
Gene	abce1	ATP-binding cassette, sub-family E (OABP), member 1
Gene	acyp1	acylphosphatase 1, erythrocyte (common) type
Gene	akirin2	akirin 2
Gene	angel1	angel homolog 1 (Drosophila)
Gene	ap1b1	adaptor related protein complex 1 subunit beta 1
Gene	ap5z1	adaptor related protein complex 5 subunit zeta 1
Gene	arhgap1	Rho GTPase activating protein 1
Gene	arl6ip1	ADP-ribosylation factor-like 6 interacting protein 1
Gene	asb12a	ankyrin repeat and SOCS box-containing 12a
Gene	asb13b	ankyrin repeat and SOCS box containing 13b
Gene	atad5b	ATPase family AAA domain containing 5b
Gene	atp5f1b	ATP synthase F1 subunit beta
Gene	atp5mc1	ATP synthase membrane subunit c locus 1
Gene	atp5mc3b	ATP synthase membrane subunit c locus 3b
Gene	atp5pd	ATP synthase peripheral stalk subunit d
Gene	atp6v0a1b	ATPase H+ transporting V0 subunit a1b
Gene	atp6v0a2a	ATPase H+ transporting V0 subunit a2a
Gene	atp6v0b	ATPase H+ transporting V0 subunit b
Gene	bloc1s6	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
Gene	bmt2	base methyltransferase of 25S rRNA 2 homolog
Gene	camk1b	calcium/calmodulin-dependent protein kinase Ib
Gene	ccdc6a	coiled-coil domain containing 6a
Gene	ccng1	cyclin G1
Gene	ccr10	chemokine (C-C motif) receptor 10
Gene	ccr6a	chemokine (C-C motif) receptor 6a
Gene	cdan1	codanin 1
Gene	cdc42l	cell division cycle 42, like
Gene	cdin1	CDAN1 interacting nuclease 1
Gene	chd9	chromodomain helicase DNA binding protein 9
Gene	chst12a	carbohydrate (chondroitin 4) sulfotransferase 12a
Gene	clcn3	chloride channel 3
Gene	cldna	claudin a
Gene	cog7	component of oligomeric golgi complex 7
Gene	colgalt1b	collagen beta(1-O)galactosyltransferase 1b
Gene	copg2	COPI coat complex subunit gamma 2
Gene	cplx3b	complexin 3b
Gene	cspg5a	chondroitin sulfate proteoglycan 5a
Gene	ctnna2	catenin (cadherin-associated protein), alpha 2
Gene	ctps1a	CTP synthase 1a
Gene	ctxn1	cortexin 1
Gene	cygb2	cytoglobin 2
Gene	cyth4b	cytohesin 4b
Gene	daglb	diacylglycerol lipase, beta
Gene	ddx49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
Gene	def6a	DEF6 guanine nucleotide exchange factor a
Gene	dhrs7	dehydrogenase/reductase (SDR family) member 7
Gene	dipk1b	divergent protein kinase domain 1B
Gene	dlgap2b	discs, large (Drosophila) homolog-associated protein 2b
Gene	dlst	dihydrolipoamide S-succinyltransferase
Gene	dnajb6a	DnaJ heat shock protein family (Hsp40) member B6a
Gene	dnpep	aspartyl aminopeptidase
Gene	doc2a	double C2-like domains, alpha
Gene	dph6	diphthamine biosynthesis 6
Gene	dync1i2b	dynein, cytoplasmic 1, intermediate chain 2b
Gene	ebf2	EBF transcription factor 2
Gene	eeig1a	estrogen-induced osteoclastogenesis regulator 1a
Gene	eif3f	eukaryotic translation initiation factor 3, subunit F
Gene	elp2	elongator acetyltransferase complex subunit 2
Gene	ensaa	endosulfine alpha a
Gene	entpd4	ectonucleoside triphosphate diphosphohydrolase 4
Gene	ephb4a	eph receptor B4a
Gene	esd	esterase D/formylglutathione hydrolase
Gene	etv5a	ETS variant transcription factor 5a
Gene	faim2a	Fas apoptotic inhibitory molecule 2a
Gene	fam131bb	family with sequence similarity 131 member Bb
Gene	fam169ab	family with sequence similarity 169 member Ab
Gene	fan1	FANCD2 and FANCI associated nuclease 1
Gene	fastkd3	FAST kinase domains 3
Gene	fbxo4	F-box protein 4
Gene	fbxo8	F-box protein 8
Gene	frmd4bb	FERM domain containing 4Bb
Gene	frs3	fibroblast growth factor receptor substrate 3
Gene	ftr83	finTRIM family, member 83
Gene	g3bp2b	G3BP stress granule assembly factor 2b
Gene	garre1	granule associated Rac and RHOG effector 1
Gene	gnb1b	guanine nucleotide binding protein (G protein), beta polypeptide 1b
Gene	gpat4	glycerol-3-phosphate acyltransferase 4
Gene	gpr137ba	G protein-coupled receptor 137Ba
Gene	gpr155b	G protein-coupled receptor 155b
Gene	gpr3	G protein-coupled receptor 3
Gene	gyg1a	glycogenin 1a
Gene	h3f3d	H3 histone, family 3D
Gene	hapstr1a	HUWE1 associated protein modifying stress responses a
Gene	hdac12	histone deacetylase 12
Gene	hepacam2	HEPACAM family member 2
Gene	hipk1a	homeodomain interacting protein kinase 1a
Gene	hs3st3b1b	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1b
Gene	ilf2	interleukin enhancer binding factor 2
Gene	inpp4ab	inositol polyphosphate-4-phosphatase type I Ab
Gene	ist1	IST1 factor associated with ESCRT-III
Gene	kcnab1b	potassium voltage-gated channel subfamily A regulatory beta subunit 1b
Gene	kdm3b	lysine (K)-specific demethylase 3B
Gene	kdm4c	lysine (K)-specific demethylase 4C
Gene	lgals8b	galectin 8b
Gene	lrrfip1b	leucine rich repeat (in FLII) interacting protein 1b
Gene	lzts1	leucine zipper, putative tumor suppressor 1
Gene	mansc1	MANSC domain containing 1
Gene	marchf7	membrane-associated ring finger (C3HC4) 7
Gene	mcoln1b	mucolipin TRP cation channel 1b
Gene	mfap4.2	microfibril associated protein 4, tandem duplicate 2
Gene	mffa	mitochondrial fission factor a
Gene	micu1	mitochondrial calcium uptake 1
Gene	mpc1	mitochondrial pyruvate carrier 1
Gene	mpi	mannose phosphate isomerase
Gene	mtus1a	microtubule associated tumor suppressor 1a
Gene	mtx2	metaxin 2
Gene	myom1b	myomesin 1b
Gene	nab1a	NGFI-A binding protein 1a (EGR1 binding protein 1)
Gene	nars2	asparaginyl-tRNA synthetase 2, mitochondrial
Gene	nck1a	NCK adaptor protein 1a
Gene	ndfip1l	Nedd4 family interacting protein 1, like
Gene	ndrg2	NDRG family member 2
Gene	nek10	NIMA-related kinase 10
Gene	nfyba	nuclear transcription factor Y, beta a
Gene	nipa2	NIPA magnesium transporter 2
Gene	nlrb5	NOD-like receptor family B, member 5
Gene	nnt	nicotinamide nucleotide transhydrogenase
Gene	notum2	notum pectinacetylesterase 2
Gene	npepl1	aminopeptidase like 1
Gene	nsg2	neuronal vesicle trafficking associated 2
Gene	ostc	oligosaccharyltransferase complex subunit
Gene	pcdh1gc5	protocadherin 1 gamma c 5
Gene	pcnx4	pecanex 4
Gene	pde4d	phosphodiesterase 4D, cAMP-specific
Gene	pdzrn3a	PDZ domain containing RING finger 3a
Gene	pid1	phosphotyrosine interaction domain containing 1
Gene	pip4p1a	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1a
Gene	pomt2	protein-O-mannosyltransferase 2
Gene	ppm1h	protein phosphatase, Mg2+/Mn2+ dependent, 1H
Gene	ppp1cab	protein phosphatase 1, catalytic subunit, alpha isozyme b
Gene	ppp2r1bb	protein phosphatase 2, regulatory subunit A, beta b
Gene	ppp2r5ea	protein phosphatase 2, regulatory subunit B', epsilon isoform a
Gene	prkg1a	protein kinase cGMP-dependent 1a
Gene	prkg1b	protein kinase cGMP-dependent 1b
Gene	psen1	presenilin 1
Gene	psen2	presenilin 2
Gene	psmb5	proteasome 20S subunit beta 5
Gene	pum3	pumilio RNA-binding family member 3
Gene	pyroxd1	pyridine nucleotide-disulphide oxidoreductase domain 1
Gene	qpctla	glutaminyl-peptide cyclotransferase-like a
Gene	rabggtb	Rab geranylgeranyltransferase subunit beta
Gene	rbx1	ring-box 1, E3 ubiquitin protein ligase
Gene	rhot2	ras homolog family member T2
Gene	rnaseh2c	ribonuclease H2, subunit C
Gene	rnf146	ring finger protein 146
Gene	rnf215	ring finger protein 215
Gene	ror2	receptor tyrosine kinase-like orphan receptor 2
Gene	rpl30	ribosomal protein L30
Gene	rplp2	ribosomal protein, large P2
Gene	rpn2	ribophorin II
Gene	rps6kl1	ribosomal protein S6 kinase-like 1
Gene	sall4	spalt-like transcription factor 4
Gene	scube1	signal peptide, CUB domain, EGF-like 1
Gene	sdhdb	succinate dehydrogenase complex, subunit D, integral membrane protein b
Gene	sdr42e1	short chain dehydrogenase/reductase family 42E, member 1
Gene	sema6bb	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb
Gene	senp6a	SUMO specific peptidase 6a
Gene	serinc1	serine incorporator 1
Gene	sfxn3	sideroflexin 3
Gene	sh3bp5a	SH3-domain binding protein 5a (BTK-associated)
Gene	si:cabz01036006.1	si:cabz01036006.1
Gene	si:ch1073-291c23.2	si:ch1073-291c23.2
Gene	si:ch211-202h22.10	si:ch211-202h22.10
Gene	si:ch211-212d10.1	si:ch211-212d10.1
Gene	si:ch211-215a10.4	si:ch211-215a10.4
Gene	si:ch211-235i11.4	si:ch211-235i11.4
Gene	si:ch211-235i11.6	si:ch211-235i11.6
Gene	si:ch211-59p23.1	si:ch211-59p23.1
Gene	si:ch211-67f24.7	si:ch211-67f24.7
Gene	si:ch73-173p19.1	si:ch73-173p19.1
Gene	si:ch73-236c18.5	si:ch73-236c18.5
Gene	si:dkey-16p6.1	si:dkey-16p6.1
Gene	si:dkey-206p8.1	si:dkey-206p8.1
Gene	si:dkey-21a6.5	si:dkey-21a6.5
Gene	si:dkey-23a13.11	si:dkey-23a13.11
Gene	si:dkey-81h8.1	si:dkey-81h8.1
Gene	slc13a5a	solute carrier family 13 member 5a
Gene	slc25a12	solute carrier family 25 member 12
Gene	slc25a5	solute carrier family 25 member 5
Gene	slc2a13b	solute carrier family 2 member 13b
Gene	slc39a9	solute carrier family 39 member 9
Gene	slc9a7	solute carrier family 9 member 7
Gene	slco3a1a	solute carrier organic anion transporter family member 3A1a
Gene	snrpa1	small nuclear ribonucleoprotein polypeptide A'
Gene	spag1b	sperm associated antigen 1b
Gene	sv2	synaptic vesicle glycoprotein 2
Gene	syt7b	synaptotagmin VIIb
Gene	tada2b	transcriptional adaptor 2B
Gene	tbc1d12b	TBC1 domain family, member 12b
Gene	tbl1xr1b	TBL1X/Y related 1b
Gene	tgif1	TGFB-induced factor homeobox 1
Gene	thumpd1	THUMP domain containing 1
Gene	tlcd4a	TLC domain containing 4a
Gene	tmed1b	transmembrane p24 trafficking protein 1b
Gene	tmem135	transmembrane protein 135
Gene	tmem179aa	transmembrane protein 179a, genome duplicate A
Gene	tmem185	transmembrane protein 185
Gene	tmem204	transmembrane protein 204
Gene	tmem240a	transmembrane protein 240a
Gene	tmem62	transmembrane protein 62
Gene	tmem65	transmembrane protein 65
Gene	tpgs1	tubulin polyglutamylase complex subunit 1
Gene	ttc17	tetratricopeptide repeat domain 17
Gene	ube4b	ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
Gene	ubr2	ubiquitin protein ligase E3 component n-recognin 2
Gene	uqcrc2a	ubiquinol-cytochrome c reductase core protein 2a
Gene	uqcrfs1	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
Gene	usp38	ubiquitin specific peptidase 38
Gene	xkr6b	XK, Kell blood group complex subunit-related family, member 6b
Gene	xpot	exportin, tRNA (nuclear export receptor for tRNAs)
Gene	xpr1a	xenotropic and polytropic retrovirus receptor 1a
Gene	zdhhc12a	zinc finger DHHC-type palmitoyltransferase 12a
Gene	zer1	zyg-11 related, cell cycle regulator
Gene	zgc:173624	zgc:173624
Gene	zgc:194906	zgc:194906
Gene	znf1016	zinc finger protein 1016
Gene	znf1021	zinc finger protein 1021
Gene	znf1036	zinc finger protein 1036
Gene	znf831	zinc finger protein 831
Gene	zranb1a	zinc finger, RAN-binding domain containing 1a
Gene	zyg11	zyg-11 family member, cell cycle regulator