Lo et al., 2003 - 15,000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Genome research   13(3):455-466 Full text @ Genome Res.
356 Genes / Markers
Marker Type Symbol Name
Gene aaas achalasia, adrenocortical insufficiency, alacrimia
Gene aass aminoadipate-semialdehyde synthase
Gene aatkb apoptosis-associated tyrosine kinase b
Gene abcb6a ATP-binding cassette, sub-family B (MDR/TAP), member 6a
Gene abcc4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4
Gene abhd5a abhydrolase domain containing 5, lysophosphatidic acid acyltransferase a
Gene abhd6a abhydrolase domain containing 6, acylglycerol lipase a
Gene abhd16a abhydrolase domain containing 16A, phospholipase
Gene abl1 c-abl oncogene 1, non-receptor tyrosine kinase
Gene acta2 actin alpha 2, smooth muscle
Gene adam10a ADAM metallopeptidase domain 10a
Gene adam12b ADAM metallopeptidase domain 12b
Gene adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1
Gene adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12
Gene adamtsl7 ADAMTS-like 7
Gene adamtsl8 ADAMTS-like 8
Gene adcy6a adenylate cyclase 6a
Gene adnpb activity-dependent neuroprotector homeobox b
Gene ago2 argonaute RISC catalytic component 2
Gene agrn agrin
Gene ahctf1 AT hook containing transcription factor 1
Gene alk ALK receptor tyrosine kinase
Gene ambp alpha-1-microglobulin/bikunin precursor
Gene ank3b ankyrin 3b
Gene ankfy1 ankyrin repeat and FYVE domain containing 1
Gene ankrd55 ankyrin repeat domain 55
Gene ap1g2 adaptor related protein complex 1 subunit gamma 2
Gene ap4e1 adaptor related protein complex 4 subunit epsilon 1
Gene arhgap18 Rho GTPase activating protein 18
Gene arhgap21a Rho GTPase activating protein 21a
Gene arl15a ADP-ribosylation factor-like 15a
Gene asap3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
Gene asb16 ankyrin repeat and SOCS box containing 16
Gene asnsd1 asparagine synthetase domain containing 1
Gene atf2 activating transcription factor 2
Gene atxn1b ataxin 1b
Gene atxn1l ataxin 1-like
Gene bag6l BCL2 associated athanogene 6, like
Gene bbs1 Bardet-Biedl syndrome 1
Gene bbs4 Bardet-Biedl syndrome 4
Gene bcl11bb BAF chromatin remodeling complex subunit BCL11B b
Gene bin1l bridging integrator 1-like
Gene bmp8a bone morphogenetic protein 8a
Gene brca2 BRCA2 DNA repair associated
Gene btg4 B-cell translocation gene 4
Gene btr01 bloodthirsty-related gene family, member 1
Gene c1ql1b complement component 1, q subcomponent-like 1b
Gene c1qtnf6b C1q and TNF related 6b
Gene c2cd2l c2cd2 like
Gene c9 complement component 9
Gene cacna1bb calcium channel, voltage-dependent, N type, alpha 1B subunit, b
Gene cacna1fb calcium channel, voltage-dependent, L type, alpha 1F subunit
Gene cacna2d3a calcium channel, voltage-dependent, alpha 2/delta subunit 3a
Gene cacnb3a calcium channel, voltage-dependent, beta 3a
Gene calcoco1a calcium binding and coiled-coil domain 1a
Gene calm1a calmodulin 1a
Gene calm2a calmodulin 2a (phosphorylase kinase, delta)
Gene calm3a calmodulin 3a (phosphorylase kinase, delta)
Gene capsla calcyphosine-like a
Gene caskin1 CASK interacting protein 1
Gene cbln12 cerebellin 12
Gene cbx3a chromobox homolog 3a (HP1 gamma homolog, Drosophila)
Gene cdc42ep4b CDC42 effector protein (Rho GTPase binding) 4b
Gene cdkn1ca cyclin-dependent kinase inhibitor 1Ca
Gene cltb clathrin, light chain B
Gene coch coagulation factor C homolog, cochlin (Limulus polyphemus)
Gene col1a1a collagen, type I, alpha 1a
Gene col1a2 collagen, type I, alpha 2
Gene col21a1 collagen, type XXI, alpha 1
Gene colgalt2b collagen beta(1-O)galactosyltransferase 2b
Gene corin corin, serine peptidase
Gene coro2ba coronin, actin binding protein, 2Ba
Gene cpn2 carboxypeptidase N, polypeptide 2
Gene crabp1a cellular retinoic acid binding protein 1a
Gene cspg4 chondroitin sulfate proteoglycan 4
Gene csrnp3 cysteine-serine-rich nuclear protein 3
Gene ctnnd2a catenin (cadherin-associated protein), delta 2a
Gene cubn cubilin (intrinsic factor-cobalamin receptor)
Gene daam1a dishevelled associated activator of morphogenesis 1a
Gene dbn1 drebrin 1
Gene dcakd dephospho-CoA kinase domain containing
Gene ddr1 discoidin domain receptor tyrosine kinase 1
Gene dhcr7 7-dehydrocholesterol reductase
Gene disp1 dispatched homolog 1 (Drosophila)
Gene dlg5a discs, large homolog 5a (Drosophila)
Gene dlgap4b discs, large (Drosophila) homolog-associated protein 4b
Gene dnajc5b DnaJ (Hsp40) homolog, subfamily C, member 5 beta
Gene dock9b dedicator of cytokinesis 9b
Gene dpp3 dipeptidyl-peptidase 3
Gene dpp6a dipeptidyl-peptidase 6a
Gene drd1b dopamine receptor D1b
Gene dusp6 dual specificity phosphatase 6
Gene echs1 enoyl CoA hydratase, short chain, 1, mitochondrial
Gene efr3ba EFR3 homolog Ba (S. cerevisiae)
Gene egfl6 EGF-like-domain, multiple 6
Gene eif2ak3 eukaryotic translation initiation factor 2-alpha kinase 3
Gene eif3d eukaryotic translation initiation factor 3, subunit D
Gene elk3 ETS transcription factor ELK3
Gene elk4 ETS transcription factor ELK4
Gene elna elastin a
Gene elovl6 ELOVL fatty acid elongase 6
Gene eml6 EMAP like 6
Gene epb41l5 erythrocyte membrane protein band 4.1 like 5
Gene ephx4 epoxide hydrolase 4
Gene erbb3a erb-b2 receptor tyrosine kinase 3a
Gene erfl3 Ets2 repressor factor like 3
Gene esrrga estrogen-related receptor gamma a
Gene fam13c family with sequence similarity 13 member C
Gene fbp1b fructose-1,6-bisphosphatase 1b
Gene fgd1 FYVE, RhoGEF and PH domain containing 1
Gene fgf11a fibroblast growth factor 11a
Gene fgf12a fibroblast growth factor 12a
Gene fkbp7 FKBP prolyl isomerase 7
Gene flnb filamin B, beta (actin binding protein 278)
Gene fn1b fibronectin 1b
Gene fndc7a fibronectin type III domain containing 7a
Gene frmpd3 FERM and PDZ domain containing 3
Gene frya furry homolog a (Drosophila)
Gene fryb furry homolog b (Drosophila)
Gene galnt18b UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b
Gene gas2b growth arrest-specific 2b
Gene gatm glycine amidinotransferase (L-arginine:glycine amidinotransferase)
Gene gdnfb glial cell derived neurotrophic factor b
Gene gemin5 gem (nuclear organelle) associated protein 5
Gene gfra1a gdnf family receptor alpha 1a
Gene gfra1b gdnf family receptor alpha 1b
Gene gfral GDNF family receptor alpha like
Gene gja1a gap junction protein alpha 1a
Gene glsa glutaminase a
Gene gnb4a guanine nucleotide binding protein (G protein), beta polypeptide 4a
Gene gnl1 guanine nucleotide binding protein-like 1
Gene gnpat glyceronephosphate O-acyltransferase
Gene gpr139 G protein-coupled receptor 139
Gene gpr146 G protein-coupled receptor 146
Gene gpr161a G protein-coupled receptor 161a
Gene gramd1a GRAM domain containing 1A
Gene grb10b growth factor receptor-bound protein 10b
Gene grem1a gremlin 1a, DAN family BMP antagonist
Gene grem2b gremlin 2, DAN family BMP antagonist b
Gene grk3 G protein-coupled receptor kinase 3
Gene gstp1 glutathione S-transferase pi 1
Gene her8.2 hairy-related 8.2
Gene herc4 HECT and RLD domain containing E3 ubiquitin protein ligase 4
Gene hhat hedgehog acyltransferase
Gene hnf1bb HNF1 homeobox Bb
Gene hnf4a hepatocyte nuclear factor 4, alpha
Gene hnrnpa1b heterogeneous nuclear ribonucleoprotein A1b
Gene hpda 4-hydroxyphenylpyruvate dioxygenase a
Gene hsd17b8 hydroxysteroid (17-beta) dehydrogenase 8
Gene iars2 isoleucyl-tRNA synthetase 2, mitochondrial
Gene ice2 interactor of little elongator complex ELL subunit 2
Gene ipo13b importin 13b
Gene irx5b iroquois homeobox 5b
Gene isoc1 isochorismatase domain containing 1
Gene itga7 integrin, alpha 7
Gene itih6 inter-alpha-trypsin inhibitor heavy chain family member 6
Gene itsn1 intersectin 1 (SH3 domain protein)
Gene kdm7aa lysine (K)-specific demethylase 7Aa
Gene kif1b kinesin family member 1B
Gene kif13ba kinesin family member 13Ba
Gene klhl40b kelch-like family member 40b
Gene kmt2d lysine (K)-specific methyltransferase 2D
Gene kpna3 karyopherin alpha 3 (importin alpha 4)
Gene krt1-11b keratin, type 1, gene 11b
Gene lad1 ladinin
Gene lama2 laminin, alpha 2
Gene ldlra low density lipoprotein receptor a
Gene lmtk2 lemur tyrosine kinase 2
Gene lpl lipoprotein lipase
Gene lrch2 leucine-rich repeats and calponin homology (CH) domain containing 2
Gene lrit1a leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a
Gene lrp5 low density lipoprotein receptor-related protein 5
Gene lrrc28 leucine rich repeat containing 28
Gene lrrk1 leucine-rich repeat kinase 1
Gene lss lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)
Gene ltk leukocyte receptor tyrosine kinase
Gene lyst lysosomal trafficking regulator
Gene mag myelin associated glycoprotein
Gene map3k5 mitogen-activated protein kinase kinase kinase 5
Gene mbd4 methyl-CpG binding domain protein 4
Gene mbd6 methyl-CpG binding domain protein 6
Gene mbtps2 membrane-bound transcription factor peptidase, site 2
Gene mcoln3a mucolipin TRP cation channel 3a
Gene mknk2b MAPK interacting serine/threonine kinase 2b
Gene mmp11a matrix metallopeptidase 11a
Gene mmp14a matrix metallopeptidase 14a (membrane-inserted)
Gene mmp16a matrix metallopeptidase 16a (membrane-inserted)
Gene mmp17b matrix metallopeptidase 17b
Gene mmrn2b multimerin 2b
Gene mpzl2a myelin protein zero-like 2a
Gene mpzl3 myelin protein zero-like 3
Gene mrc2 mannose receptor, C type 2
Gene msh6 mutS homolog 6 (E. coli)
Gene mtif3 mitochondrial translational initiation factor 3
Gene mtmr12 myotubularin related protein 12
Gene muc2.1 mucin 2.1
Gene mxc myxovirus (influenza virus) resistance C
Gene mycbp2 MYC binding protein 2
Gene myo1cb myosin Ic, paralog b
Gene myo5aa myosin VAa
Gene myom1b myomesin 1b
Gene ncor2 nuclear receptor corepressor 2
Gene nek1 NIMA-related kinase 1
Gene nf1b neurofibromin 1b
Gene nfs1 NFS1 cysteine desulfurase
Gene ngfa nerve growth factor a (beta polypeptide)
Gene nms neuromedin S
Gene nol9 nucleolar protein 9
Gene npc1l1 NPC1-like 1
Gene npffl neuropeptide FF-amide peptide precursor like
Gene nsd3 nuclear receptor binding SET domain protein 3
Gene ntrk3a neurotrophic tyrosine kinase, receptor, type 3a
Gene ntrk3b neurotrophic tyrosine kinase, receptor, type 3b
Gene nusap1 nucleolar and spindle associated protein 1
Gene oafa OAF homolog a (Drosophila)
Gene oca2 oculocutaneous albinism II
Gene ophn1 oligophrenin 1
Gene opn4xb opsin 4xb
Gene opn6b opsin 6, group member b
Gene osgepl1 O-sialoglycoprotein endopeptidase-like 1
Gene otud5a OTU deubiquitinase 5a
Gene p2rx2 purinergic receptor P2X, ligand-gated ion channel, 2
Gene p2ry1 purinergic receptor P2Y1
Gene paplna papilin a, proteoglycan-like sulfated glycoprotein
Gene pbx3a pre-B-cell leukemia homeobox 3a
Gene pcbd2 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
Gene pcdh7a protocadherin 7a
Gene pcdh15a protocadherin-related 15a
Gene pde1a phosphodiesterase 1A, calmodulin-dependent
Gene pdlim3a PDZ and LIM domain 3a
Gene pdzd3a PDZ domain containing 3a
Gene per2 period circadian clock 2
Gene pex1 peroxisomal biogenesis factor 1
Gene phf8 PHD finger protein 8
Gene pkd1b polycystic kidney disease 1b
Gene pknox1.2 pbx/knotted 1 homeobox 1.2
Gene plcb2 phospholipase C, beta 2
Gene plp2b proteolipid protein 2b
Gene pms1 PMS1 homolog 1, mismatch repair system component
Gene polg polymerase (DNA directed), gamma
Gene ppp1cb protein phosphatase 1, catalytic subunit, beta isozyme
Gene pqbp1 polyglutamine binding protein 1
Gene prmt5 protein arginine methyltransferase 5
Gene prps1b phosphoribosyl pyrophosphate synthetase 1B
Gene prtgb protogenin homolog b (Gallus gallus)
Gene ptges prostaglandin E synthase
Gene ptprdb protein tyrosine phosphatase receptor type Db
Gene ptprz1a protein tyrosine phosphatase receptor type Z1a
Gene pvalb8 parvalbumin 8
Gene rab32b RAB32b, member RAS oncogene family
Gene raf1b Raf-1 proto-oncogene, serine/threonine kinase b
Gene rbm38 RNA binding motif protein 38
Gene rbms2a RNA binding motif, single stranded interacting protein 2a
Gene recql4 RecQ helicase-like 4
Gene rflna refilin A
Gene rgra retinal G protein coupled receptor a
Gene rnaset2l ribonuclease T2, like
Gene rnd2 Rho family GTPase 2
Gene rnf111 ring finger protein 111
Gene roraa RAR-related orphan receptor A, paralog a
Gene s1pr2 sphingosine-1-phosphate receptor 2
Gene sarm1 sterile alpha and TIR motif containing 1
Gene sbf2 SET binding factor 2
Gene scaper S-phase cyclin A-associated protein in the ER
Gene scfd1 sec1 family domain containing 1
Gene scrib scribble planar cell polarity protein
Gene sec31b SEC31 homolog B, COPII coat complex component
Gene serpinc1 serpin peptidase inhibitor, clade C (antithrombin), member 1
Gene serpind1 serpin peptidase inhibitor, clade D (heparin cofactor), member 1
Gene sh3gl1b SH3-domain GRB2-like 1b
Gene she Src homology 2 domain containing E
Gene si:busm1-44o19.2 si:busm1-44o19.2
Gene si:busm1-163l24.3 si:busm1-163l24.3
Gene si:ch211-214p16.1 si:ch211-214p16.1
Gene si:ch211-214p16.2 si:ch211-214p16.2
Gene si:rp71-20i5.5 si:rp71-20i5.5
Gene slain1a SLAIN motif family, member 1a
Gene slc1a5 solute carrier family 1 member 5
Gene slc2a3b solute carrier family 2 member 3b
Gene slc2a4rg SLC2A4 regulator
Gene slc2a5 solute carrier family 2 member 5
Gene slc4a1a solute carrier family 4 member 1a (Diego blood group)
Gene slc6a4a solute carrier family 6 member 4a
Gene slc6a5 solute carrier family 6 member 5
Gene slc7a8a solute carrier family 7 member 8a
Gene slc17a6a solute carrier family 17 member 6a
Gene slc34a1a solute carrier family 34 member 1a
Gene slc35a5 solute carrier family 35 member A5
Gene slc36a1 solute carrier family 36 member 1
Gene slc39a11 solute carrier family 39, member 11
Gene slc39a13 solute carrier family 39 member 13
Gene slc40a1 solute carrier family 40 member 1
Gene slco1e1 solute carrier organic anion transporter family, member 1E1
Gene slco2a1 solute carrier organic anion transporter family, member 2A1
Gene slco4a1 solute carrier organic anion transporter family, member 4A1
Gene snapc2 small nuclear RNA activating complex, polypeptide 2
Gene snd1 staphylococcal nuclease and tudor domain containing 1
Gene snip1 Smad nuclear interacting protein
Gene snx1a sorting nexin 1a
Gene sorbs2a sorbin and SH3 domain containing 2a
Gene sorbs2b sorbin and SH3 domain containing 2b
Gene sox21a SRY-box transcription factor 21a
Gene spats2 spermatogenesis associated serine rich 2
Gene spdef SAM pointed domain containing ets transcription factor
Gene specc1lb sperm antigen with calponin homology and coiled-coil domains 1-like b
Gene sprn shadow of prion protein
Gene spryd7a SPRY domain containing 7a
Gene srgap3 SLIT-ROBO Rho GTPase activating protein 3
Gene srsf3a serine and arginine rich splicing factor 3a
Gene sst5 somatostatin 5
Gene stat1b signal transducer and activator of transcription 1b
Gene stat4 signal transducer and activator of transcription 4
Gene stat5a signal transducer and activator of transcription 5a
Gene strn4 striatin, calmodulin binding protein 4
Gene surf1 SURF1 cytochrome c oxidase assembly factor
Gene swsap1 SWIM-type zinc finger 7 associated protein 1
Gene synpo2a synaptopodin 2a
Gene sypa synaptophysin a
Gene syt6a synaptotagmin VIa
Gene syt8 synaptotagmin VIII
Gene tap1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
Gene tcf19l transcription factor 19 (SC1), like
Gene tegt testis enhanced gene transcript (BAX inhibitor 1)
Gene tfap4 transcription factor AP-4 (activating enhancer binding protein 4)
Gene tfpia tissue factor pathway inhibitor a
Gene tgfbi transforming growth factor, beta-induced
Gene tlr19.1 toll-like receptor 19, tandem duplicate 1
Gene tmem30ab transmembrane protein 30Ab
Gene tmem35 transmembrane protein 35
lincRNA Gene tmem100b transmembrane protein 100b
Gene tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3
Gene tmub2 transmembrane and ubiquitin-like domain containing 2
Gene tnrc6a trinucleotide repeat containing adaptor 6A
Gene triob trio Rho guanine nucleotide exchange factor b
Gene tub TUB bipartite transcription factor
Gene tubgcp3 tubulin, gamma complex associated protein 3
Gene tyrp1a tyrosinase-related protein 1a
Gene ubl3b ubiquitin-like 3b
Gene uggt2 UDP-glucose glycoprotein glucosyltransferase 2
Gene unc119a unc-119 homolog a (C. elegans)
Gene usp12a ubiquitin specific peptidase 12a
Gene usp53a ubiquitin specific peptidase 53a
Gene vat1 vesicle amine transport 1
Gene vgf VGF nerve growth factor inducible
Gene vps13d vacuolar protein sorting 13 homolog D
Gene wdr47a WD repeat domain 47a
Gene wdr75 WD repeat domain 75
Gene ccn5 cellular communication network factor 5
Gene wnt5a wingless-type MMTV integration site family, member 5a
Gene wu:fi36c02 wu:fi36c02
Gene wu:fj34d09 wu:fj34d09
Gene zbtb34 zinc finger and BTB domain containing 34
Gene zic3 zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)
Gene zmynd8 zinc finger, MYND-type containing 8
Gene znf536 zinc finger protein 536
Gene zp3f.1 zona pellucida glycoprotein 3f, tandem duplicate 1