Figure 1

The pipeline of visualizing the genetic and genomic data of the grass carp.
Figure 2

The grass carp genome annotation data model.
Figure 3

Genetic map of the second linkage group (LG2). A vertical bar is in the middle, marker names and genetic distances are on the sides. For SNPs, we specially marked red to distinguish it with others.
Figure 4

Gene collinearity between the grass carp and the zebrafish. A, For each synteny diagram, the grass carp scaffold (left) is represented by blue blocks (for example, CI00000003). Each block represents a grass carp gene. The zebrafish chromosome (right) is represented by red blocks (for example, DR02). Each block represents one or several zebrafish genes. Homologous genes are connected by blue lines. B, Details of some homologous genes between zebrafish and grass carp are presented in a tabular format.
Figure 5

All available data of genome annotations rendered in JBrowse. A, Selected data appears graphically on the right main window by selecting the options in the left frame. B, Detailed annotation of protein-coding gene will be displayed after clicking on the gene structure. Detailed annotation of other data can also be rendered selectively as described operation above.
Figure 6

The conserved domain under a gene. Each line with arrow represents a conserved domain. For example, CI00000000:08634004. 08675794 is shown.
Figure 7

The gene expression in 6 tissues. For example, RPKM of gene CI01000000_00034855_00045035 is shown.
Figure 8

RNA-seq reads of grass carp. A, RNA-seq reads (Sample id 'ERR472713') were mapped to the reference genome. B, Density map of reads per 50bp. Here we captured the density map of 4 samples.
Acknowledgments
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