ZFIN Publication ID	PubMed ID	Authors	Title	Journal	Year	Volume	Pages
ZDB-PUB-040217-2	12477932	Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences	Proceedings of the National Academy of Sciences of the United States of America	2002	99(26)	16899-903
ZDB-PUB-080924-2	18803863	Kolmakov, N.N., Kube, M., Reinhardt, R., and Canario, A.V.	Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones	BMC Genomics	2008	9	429
ZDB-PUB-090616-41	19504456	Wong, K.S., Proulx, K., Rost, M.S., and Sumanas, S.	Identification of vasculature-specific genes by microarray analysis of etsrp/etv2 overexpressing zebrafish embryos	Developmental Dynamics : an official publication of the American Association of Anatomists	2009	238(7)	1836-1850
ZDB-PUB-101108-21	21042590	Nourizadeh-Lillabadi, R., Seilø Torgersen, J., Vestrheim, O., König, M., Aleström, P., and Syed, M.	Early embryonic gene expression profiling of zebrafish prion protein (prp2) morphants	PLoS One	2010	5(10)	e13573
ZDB-PUB-120111-4	22210003	Shen, Y.C., Thompson, D.L., Kuah, M.K., Wong, K.L., Wu, K.L., Linn, S.A., Jewett, E.M., Shu-Chien, A.C., and Barald, K.F.	The cytokine macrophage migration inhibitory factor (MIF) acts as a neurotrophin in the developing inner ear of the zebrafish, Danio rerio	Developmental Biology	2012	363(1)	84-94
ZDB-PUB-120327-3	22438865	Gomez, G., Lee, J.H., Veldman, M.B., Lu, J., Xiao, X., and Lin, S.	Identification of Vascular and Hematopoietic Genes Downstream of etsrp by Deep Sequencing in Zebrafish	PLoS One	2012	7(3)	e31658
ZDB-PUB-120720-2	22805612	Yang, D., Liu, Q., Yang, M., Wu, H., Wang, Q., Xiao, J., and Zhang, Y.	RNA-seq liver transcriptome analysis reveals an activated MHC-I pathway and an inhibited MHC-II pathway at the early stage of vaccine immunization in zebrafish	BMC Genomics	2012	13(1)	319
ZDB-PUB-140513-246	24683187	Briolat, V., Jouneau, L., Carvalho, R., Palha, N., Langevin, C., Herbomel, P., Schwartz, O., Spaink, H.P., Levraud, J.P., Boudinot, P.	Contrasted Innate Responses to Two Viruses in Zebrafish: Insights into the Ancestral Repertoire of Vertebrate IFN-Stimulated Genes	Journal of immunology (Baltimore, Md. : 1950)	2014	192	4328-41
ZDB-PUB-160825-12	27409813	Filiano, A.J., Xu, Y., Tustison, N.J., Marsh, R.L., Baker, W., Smirnov, I., Overall, C.C., Gadani, S.P., Turner, S.D., Weng, Z., Peerzade, S.N., Chen, H., Lee, K.S., Scott, M.M., Beenhakker, M.P., Litvak, V., Kipnis, J.	Unexpected role of interferon-γ in regulating neuronal connectivity and social behaviour	Nature	2016	535	425-9
ZDB-PUB-161025-35	27757989	Oosterhof, N., Holtman, I.R., Kuil, L.E., van der Linde, H.C., Boddeke, E.W., Eggen, B.J., van Ham, T.J.	Identification of a conserved and acute neurodegeneration-specific microglial transcriptome in the zebrafish	Glia	2017	65(1)	138-149
ZDB-PUB-161113-13	27834691	Serbanovic-Canic, J., de Luca, A., Warboys, C., Ferreira, P.F., Luong, L.A., Hsiao, S., Gauci, I., Mahmoud, M., Feng, S., Souilhol, C., Bowden, N., Ashton, J.P., Walczak, H., Firmin, D., Krams, R., Mason, J.C., Haskard, D.O., Sherwin, S., Ridger, V., Chico, T.J., Evans, P.C.	Zebrafish Model for Functional Screening of Flow-Responsive Genes	Arteriosclerosis, Thrombosis, and Vascular Biology	2017	37(1)	130-143
ZDB-PUB-170214-96	26469318	Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R.	RFX transcription factors are essential for hearing in mice	Nature communications	2015	6	8549
ZDB-PUB-170713-9	28698226	Chernyavskaya, Y., Mudbhary, R., Tokarz, D., Jacob, V., Gopinath, S., Zhang, C., Sun, X., Wang, S., Magnani, E., Madakashira, B.P., Yoder, J.A., Hoshida, Y., Sadler, K.C.	Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling	Development (Cambridge, England)	2017	144(16)	2925-2939
ZDB-PUB-181101-4	30377750	Dijkstra, J.M., Yamaguchi, T.	Ancient features of the MHC class II presentation pathway, and a model for the possible origin of MHC molecules	Immunogenetics	2018	71(3)	233-249
ZDB-PUB-181224-20	30579210	Liu, H., Wang, X., Wu, Y., Hou, J., Zhang, S., Zhou, N., Wang, X.	Toxicity responses of different organs of zebrafish (Danio rerio) to silver nanoparticles with different particle sizes and surface coatings	Environmental pollution (Barking, Essex : 1987)	2018	246	414-422
ZDB-PUB-190320-4	30885554	Cao, L., Wu, X.M., Nie, P., Chang, M.X.	The negative regulation of piscine CD44c in viral and bacterial infection	Developmental and comparative immunology	2019	96	135-143
ZDB-PUB-190425-21	31018142	Cosacak, M.I., Bhattarai, P., Reinhardt, S., Petzold, A., Dahl, A., Zhang, Y., Kizil, C.	Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity	Cell Reports	2019	27	1307-1318.e3
ZDB-PUB-191121-5	31745184	Meguro, S., Hosoi, S., Hasumura, T.	High-fat diet impairs cognitive function of zebrafish	Scientific Reports	2019	9	17063
ZDB-PUB-201120-156	33203921	Demin, K.A., Lakstygal, A.M., Krotova, N.A., Masharsky, A., Tagawa, N., Chernysh, M.V., Ilyin, N.P., Taranov, A.S., Galstyan, D.S., Derzhavina, K.A., Levchenko, N.A., Kolesnikova, T.O., Mor, M.S., Vasyutina, M.L., Efimova, E.V., Katolikova, N., Prjibelski, A.D., Gainetdinov, R.R., de Abreu, M.S., Amstislavskaya, T.G., Strekalova, T., Kalueff, A.V.	Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish	Scientific Reports	2020	10	19981
ZDB-PUB-201120-69	33163496	Demirci, Y., Cucun, G., Poyraz, Y.K., Mohammed, S., Heger, G., Papatheodorou, I., Ozhan, G.	Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signaling at the Early Wound Healing Stage	Frontiers in cell and developmental biology	2020	8	584604
ZDB-PUB-221122-1	36403304	Yu, F., Luo, H.R., Cui, X.F., Wu, Y.J., Li, J.L., Feng, W.R., Tang, Y.K., Su, S.Y., Xiao, J., Hou, Z.S., Xu, P.	Changes in aggression and locomotor behaviors in response to zinc is accompanied by brain cell heterogeneity and metabolic and circadian dysregulation of the brain-liver axis	Ecotoxicology and environmental safety	2022	248	114303
ZDB-PUB-230425-51	37094155	Wang, A., Wan, X., Zhuang, P., Jia, W., Ao, Y., Liu, X., Tian, Y., Zhu, L., Huang, Y., Yao, J., Wang, B., Wu, Y., Xu, Z., Wang, J., Yao, W., Jiao, J., Zhang, Y.	High fried food consumption impacts anxiety and depression due to lipid metabolism disturbance and neuroinflammation	Proceedings of the National Academy of Sciences of the United States of America	2023	120	e2221097120e2221097120
ZDB-PUB-991007-7	10541812	Yoder, J.A., Haire, R.N., and Litman, G.W.	Cloning of two zebrafish cDNAs that share domains with the MHC class II-associated invariant chain	Immunogenetics	1999	50	84-88