ZFIN Publication ID	PubMed ID	Authors	Title	Journal	Year	Volume	Pages
ZDB-PUB-000201-10	10625541	Hashimoto, H., Itoh, M., Yamanaka, Y., Yamashita, S., Shimizu, T., Solnica-Krezel, L., Hibi, M., and Hirano, T.	Zebrafish Dkk1 functions in forebrain specification and axial mesendoderm formation	Developmental Biology	2000	217(1)	138-152
ZDB-PUB-000201-23	10648223	Plaut, I.	Effects of fin size on swimming performance, swimming behaviour and routine activity of zebrafish Danio rerio	The Journal of experimental biology	2000	203(Pt.4)	813-820
ZDB-PUB-000201-31	10625563	Li, Y.X., Farrell, M.J., Liu, R., Mohanty, N., and Kirby, M.L.	Double-stranded RNA injection produces null phenotypes in zebrafish	Developmental Biology	2000	217(2)	394-405
ZDB-PUB-000223-6	10667793	Thisse, B., Wright, C.V.E., and Thisse, C.	Activin- and Nodal-related factors control antero-posterior patterning of the zebrafish embryo	Nature	2000	403(6768)	425-428
ZDB-PUB-000309-33	10694427	Odenthal, J., van Eeden, F.J., Haffter, P., Ingham, P.W., and Nüsslein-Volhard, C.	Two distinct cell populations in the floor plate of the zebrafish are induced by different pathways	Developmental Biology	2000	219(2)	350-363
ZDB-PUB-000309-37	10683174	Nguyen, V.H., Trout, J., Connors, SA.., Andermann, P., Weinberg, E., and Mullins, M.C.	Dorsal and intermediate neuronal cell types of the spinal cord are established by a BMP signaling pathway	Development (Cambridge, England)	2000	127(6)	1209-1220
ZDB-PUB-000309-42	10662647	Essner, J.J., Branford, W.W., Zhang, J., and Yost, H.J.	Mesendoderm and left-right brain, heart and gut development are differentially regulated by pitx2 isoforms	Development (Cambridge, England)	2000	127(5)	1081-1093
ZDB-PUB-000309-45	10656766	Griffin, K.J., Stoller, J., Gibson, M., Chen, S., Yelon, D., Stainier, D.Y., and Kimelman, D.	A conserved role for H15-related T-Box transcription factors in zebrafish and Drosophila heart formation	Developmental Biology	2000	218(2)	235-247
ZDB-PUB-000505-5	10794076	Semino, C.E. and Allende, M.L.	Chitin oligosaccharides as candidate patterning agents in zebrafish embryogenesis	The International journal of developmental biology	2000	44(2)	183-193
ZDB-PUB-000803-2	10887160	Bally-Cuif, L., Goutel, C., Wassef, M., Wurst, W., and Rosa, F.	Coregulation of anterior and posterior mesendodermal development by a hairy-related transcriptional repressor	Genes & Development	2000	14(13)	1664-1677
ZDB-PUB-000824-12	10898958	Oates, A.C., Bruce, A.E., and Ho, R.K.	Too much interference: injection of double-stranded RNA has nonspecific effects in the zebrafish embryo	Developmental Biology	2000	224(1)	20-28
ZDB-PUB-000824-13	10903167	Saude, L., Woolley, K., Martin, P., Driever, W., and Stemple, D.L.	Axis-inducing activities and cell fates of the zebrafish organizer	Development (Cambridge, England)	2000	127(16)	3407-3417
ZDB-PUB-000824-14	10903181	Bisgrove, B.W., Essner, J.J., Yost, H.J.	Multiple pathways in the midline regulate concordant brain, heart and gut left-right asymmetry	Development (Cambridge, England)	2000	127(16)	3567-3579
ZDB-PUB-000824-15	10906458	Kaufman, C.D., Martinez-Rodriguez, G., and Hackett, P.B.	Ectopic expression of c-ski disrupts gastrulation and neural patterning in zebrafish	Mechanisms of Development	2000	95(1-2)	147-162
ZDB-PUB-000824-33	10944579	McGhee, J.D.	Homologous tails? Or tales of homology?	BioEssays : news and reviews in molecular, cellular and developmental biology	2000	22(9)	781-785
ZDB-PUB-000824-5	10660676	Rubinstein, A.L., Lee, D., Luo, R., Henion, P.D., and Halpern, M.E.	Genes dependent on zebrafish cyclops function identified by AFLP differential gene expression screen	Genesis (New York, N.Y. : 2000)	2000	26(1)	86-97
ZDB-PUB-001003-2	10996072	Sirotkin, H.I., Gates, M.A., Kelly, P.D., Schier, A.F., and Talbot, W.S.	fast1 is required for the development of dorsal axial structures in zebrafish	Current biology : CB	2000	10(17)	1051-1054
ZDB-PUB-001019-12	11017081	Nasevicius, A. and Ekker, S.C.	Effective targeted gene 'knockdown' in zebrafish	Nature Genetics	2000	26(2)	216-220
ZDB-PUB-001019-8	11023870	Chen, S.R. and Kimelman, D.	The role of the yolk syncytial layer in germ layer patterning in zebrafish	Development (Cambridge, England)	2000	127(21)	4681-4689
ZDB-PUB-001027-7	11050240	Kawahara, A., Wilm, T., Solnica-Krezel, L., and Dawid, I.B.	Antagonistic role of vega1 and bozozok/dharma homeobox genes in organizer formation	Proceedings of the National Academy of Sciences of the United States of America	2000	97(22)	12121-12126
ZDB-PUB-001101-4	11044603	Shinya, M., Eschbach, C., Clark, M., Lehrach, H., and Furutani-Seiki, M.	Zebrafish Dkk1, induced by the pre-MBT Wnt signaling, is secreted from the prechordal plate and patterns the anterior neural plate	Mechanisms of Development	2000	98(1-2)	3-17
ZDB-PUB-001107-1	11060236	Liang, J.O., Etheridge, A., Hantsoo, L., Rubinstein, A.L., Nowak, S.J., Izpisúa Belmonte, J.C., and Halpern, M.E.	Asymmetric Nodal signaling in the zebrafish diencephalon positions the pineal organ	Development (Cambridge, England)	2000	127(23)	5101-5112
ZDB-PUB-001205-15	11071763	Chin, A.J., Tsang, M., and Weinberg, E.S.	Heart and gut chiralities are controlled independently from initial heart position in the developing zebrafish	Developmental Biology	2000	227(2)	403-421
ZDB-PUB-001213-2	11066087	Stickney, H.L., Barresi, M.J.F., and Devoto, S.H.	Somite development in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2000	219(3)	287-303
ZDB-PUB-001213-6	11144351	Concha, M.L., Burdine, R.D., Russell, C., Schier, A.F., and Wilson, S.W.	A nodal signaling pathway regulates the laterality of neuroanatomical asymmetries in the zebrafish forebrain	Neuron	2000	28(2)	399-409
ZDB-PUB-010102-1	11087624	Muraoka, O., Ichikawa, H., Shi, H., Okumura, S., Taira, E., Higuchi, H., Hirano, T., Hibi, M., and Miki, N.	Kheper, a Novel ZFH/δEF1 Family Member, Regulates the Development of the Neuroectoderm of Zebrafish (Danio rerio)	Developmental Biology	2000	228(1)	29-40
ZDB-PUB-010102-3	11204460	Mangos, S., Krawetz, R., and Kelly, G.M.	The translocon-associated protein b (TRAPb) in zebrafish embryogenesis. I. Enhanced expression of transcripts in notochord and hatching gland precursors	Molecular and cellular biochemistry	2000	215(1-2)	93-101
ZDB-PUB-010117-1	11124801	Gonzalez, E.M., Fekany-Lee, K., Carmany-Rampey, A., Erter, C., Topczewski, J., Wright, C.V.E., and Solnica-Krezel, L.	Head and trunk in zebrafish arise via coinhibition of BMP signaling by bozozok and chordino	Genes & Development	2000	14(24)	3087-3092
ZDB-PUB-010205-4	11161572	Biemar, F., Argenton, F., Schmidtke, R., Epperlein, S., Peers, B., and Driever, W.	Pancreas development in zebrafish: early dispersed appearance of endocrine hormone expressing cells and their convergence to form the definitive islet	Developmental Biology	2001	230(2)	189-203
ZDB-PUB-010219-14	11165484	Payne, T.L., Postlethwait, J.H., and Yelick, P.C.	Functional characterization and genetic mapping of alk8	Mechanisms of Development	2001	100(2)	275-289
ZDB-PUB-010220-4	11161558	Yeo, S.Y., Little, M.H., Yamada, T., Miyashita, T., Halloran, M.C., Kuwada, J.Y., Huh, T.L., and Okamoto, H.	Overexpression of a slit homologue impairs convergent extension of the mesoderm and causes cyclopia in embryonic zebrafish	Developmental Biology	2001	230(1)	1-17
ZDB-PUB-010404-13	11252185	Hauptmann, G.	Two-color detection of mRNA transcript localizations in fish and fly embryos using alkaline phosphatase and beta-galactosidase conjugated antibodies	Development genes and evolution	1999	209(5)	317-321
ZDB-PUB-010404-14	11250159	Müller, F., Lakatos, L., Dantonel, J., Strähle, U., and Tora, L.	TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish	Current biology : CB	2001	11(4)	282-287
ZDB-PUB-010410-2	11291860	Solnica-Krezel, L. and Driever, W.	The role of the homeodomain protein Bozozok in zebrafish axis formation	The International journal of developmental biology	2001	45(1)	299-310
ZDB-PUB-010423-6	11307172	Sagerström, C.G., Kao, B.A., Lane, M.E., and Sive, H.	Isolation and characterization of posteriorly restricted genes in the zebrafish gastrula	Developmental Dynamics : an official publication of the American Association of Anatomists	2001	220(4)	402-408
ZDB-PUB-010601-1	11385578	Chen, Y. and Schier, A.F.	The zebrafish Nodal signal Squint functions as a morphogen	Nature	2001	411(6837)	607-610
ZDB-PUB-010705-7	11456450	Coutelle, O., Blagden, C.S., Hampson, R., Halai, C., Rigby, P.W.J., and Hughes, S.M.	Hedgehog signalling is required for maintenance of myf5 and myoD expression and timely terminal differentiation in zebrafish adaxial myogenesis	Developmental Biology	2001	236(1)	136-150
ZDB-PUB-010705-9	11438735	Kudoh, T. and Dawid, I.B.	Role of the iroquois3 homeobox gene in organizer formation	Proceedings of the National Academy of Sciences of the United States of America	2001	98(14)	7852-7857
ZDB-PUB-010807-16	11477686	Sumanas, S., Kim, H.J., Hermanson, S., and Ekker, S.C.	Zebrafish frizzled-2 morphant displays defects in body axis elongation	Genesis (New York, N.Y. : 2000)	2001	30(3)	114-118
ZDB-PUB-010905-2	11553329	Kawahara, A. and Dawid, I.B.	Critical role of biklf in erythroid cell differentiation in zebrafish	Current biology : CB	2001	11(17)	1353-1357
ZDB-PUB-010917-5	11477701	Feldman, B. and Stemple, D.L.	Morpholino phenocopies of sqt, oep, and ntl mutations	Genesis (New York, N.Y. : 2000)	2001	30(3)	175-177
ZDB-PUB-010927-6	11562356	Topczewska, J.M., Topczewski, J., Shostak, A., Kume, T., Solnica-Krezel, L., and Hogan, B.L.	The winged helix transcription factor Foxc1a is essential for somitogenesis in zebrafish	Genes & Development	2001	15(18)	2483-2493
ZDB-PUB-011002-1	11566861	Erter, C.E., Wilm, T.P., Basler, N., Wright, C.V., and Solnica-Krezel, L.	Wnt8 is required in lateral mesendodermal precursors for neural posteriorization in vivo	Development (Cambridge, England)	2001	128(18)	3571-3583
ZDB-PUB-011002-4	11688558	Begemann, G., Schilling, T.F., Rauch, G.J., Geisler, R., and Ingham, P.W.	The zebrafish neckless mutation reveals a requirement for raldh2 in mesodermal signals that pattern the hindbrain	Development (Cambridge, England)	2001	128(16)	3081-3094
ZDB-PUB-011113-1	11784077	Henry, C.A., Crawford, B.D., Yan, Y.-L., Postlethwait, J., Cooper, M.S., and Hille, M.B.	Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis	Developmental Biology	2001	240(2)	474-487
ZDB-PUB-011116-4	11703928	Lekven, A.C., Thorpe, C.J., Waxman, J.S., and Moon, R.T.	Zebrafish wnt8 encodes two wnt8 proteins on a bicistronic transcript and is required for mesoderm and neurectoderm patterning	Developmental Cell	2001	1(1)	103-114
ZDB-PUB-011203-1	11784095	Willot, V., Mathieu, J., Lu, Y., Schmid, B., Sidi, S., Yan, Y.-L., Postlethwait, J.H., Mullins, M., Rosa, F., and Peyriéras, N.	Cooperative action of ADMP- and BMP-mediated pathways in regulating cell fates in the zebrafish gastrula	Developmental Biology	2002	241(1)	59-78
ZDB-PUB-011217-12	11748834	Du, S.J. and Dienhart, M.	Zebrafish tiggy-winkle hedgehog promoter directs notochord and floor plate green fluorescence protein expression in transgenic zebrafish embryos	Developmental Dynamics : an official publication of the American Association of Anatomists	2001	222(4)	655-666
ZDB-PUB-011221-1	11782398	Weidinger, G., Wolke, U., Köprunner, M., Thisse, C., Thisse, B. and Raz, E.	Regulation of zebrafish primordial germ cell migration by attraction towards an intermediate target	Development (Cambridge, England)	2002	129	25-36
ZDB-PUB-020219-7	11862464	Dickmeis, T., Rastegar, S., Aanstad, P., Clark, M., Fischer, N., Korzh, V., and Strähle, U.	Expression of the anti-dorsalizing morphogenetic protein gene in the zebrafish embryo	Development genes and evolution	2001	211(11)	568-572
ZDB-PUB-020220-13	11830566	Liao, E.C., Trede, N.S., Ransom, D., Zapata, A., Kieran, M., and Zon, L.I.	Non-cell autonomous requirement for the bloodless gene in primitive hematopoiesis of zebrafish	Development (Cambridge, England)	2002	129(3)	649-659
ZDB-PUB-020227-6	11861475	Reim, G. and Brand, M.	spiel-ohne-grenzen/pou2 mediates regional competence to respond to Fgf8 during zebrafish early neural development	Development (Cambridge, England)	2002	129(4)	917-933
ZDB-PUB-020513-6	12015969	Bakkers, J., Hild, M., Kramer, C., Furutani-Seiki, M., and Hammerschmidt, M.	Zebrafish Delta Np63 is a direct target of Bmp signaling and encodes a transcriptional repressor blocking neural specification in the ventral ectoderm	Developmental Cell	2002	2(5)	617-627
ZDB-PUB-020521-3	12015285	Latimer, A.J., Dong, X., Markov, Y., and Appel, B.	Delta-Notch signaling induces hypochord development in zebrafish	Development (Cambridge, England)	2002	129(11)	2555-2563
ZDB-PUB-020605-4	12021786	Nikaido, M., Kawakami, A., Sawada, A., Furutani-Seiki, M., Takeda, H., and Araki, K.	Tbx24, encoding a T-box protein, is mutated in the zebrafish somite-segmentation mutant fused somites	Nature Genetics	2002	31(2)	195-199
ZDB-PUB-020624-2	12062050	Marlow, F., Topczewski, J., Sepich, D., and Solnica-Krezel, L.	Zebrafish rho kinase 2 acts downstream of wnt11 to mediate cell polarity and effective convergence and extension movements	Current biology : CB	2002	12(11)	876-884
ZDB-PUB-020708-6	12112472	Cerdà, J., Gründ, C., Franke, W.W., and Brand, M.	Molecular characterization of calymmin, a novel notochord sheath-associated extracellular matrix protein in the zebrafish embryo	Developmental Dynamics : an official publication of the American Association of Anatomists	2002	224(2)	200-209
ZDB-PUB-020716-15	12112463	Pogoda, H.M. and Meyer, D.	Zebrafish smad7 is regulated by Smad3 and BMP signals	Developmental Dynamics : an official publication of the American Association of Anatomists	2002	224(3)	334-349
ZDB-PUB-020716-23	12091302	Amacher, S.L., Draper, B.W., Summers, B.R., and Kimmel, C.B.	The zebrafish T-box genes no tail and spadetail are required for development of trunk and tail mesoderm and medial floor plate	Development (Cambridge, England)	2002	129(14)	3311-3323
ZDB-PUB-020806-4	12135921	Maves, L., Jackman, W., and Kimmel, C.B.	FGF3 and FGF8 mediate a rhombomere 4 signaling activity in the zebrafish hindbrain	Development (Cambridge, England)	2002	129	3825-3837
ZDB-PUB-020905-2	12183385	Kudoh, T., Wilson, S.W., and Dawid, I.B.	Distinct roles for Fgf, Wnt and retinoic acid in posteriorizing the neural ectoderm	Development (Cambridge, England)	2002	129(18)	4335-4346
ZDB-PUB-020909-1	12203738	Etheridge, L., diIorio, P. and Sagerström, C.G.	A zebrafish unc-45 related gene expressed during muscle development	Developmental Dynamics : an official publication of the American Association of Anatomists	2002	224(4)	457-460
ZDB-PUB-020913-5	12223403	Kim, S.-H., Shin, J., Park, H.-C., Yeo, S.-Y., Hong, S.-K., Han, S., Rhee, M., Kim, C.-H., Chitnis, A.B., and Huh, T.-L.	Specification of an anterior neuroectoderm patterning by Frizzled8a-mediated Wnt8b signalling during late gastrulation in zebrafish	Development (Cambridge, England)	2002	129(19)	4443-4455
ZDB-PUB-021016-2	12360294	Griffin, K.J.P. and Kimelman, D.	One-Eyed Pinhead and Spadetail are essential for heart and somite formation	Nature cell biology	2002	4(10)	821-825
ZDB-PUB-021016-8	12368263	Hoshijima, K., Metherall, J.E., and Grunwald, D.J.	A protein disulfide isomerase expressed in the embryonic midline is required for left/right asymmetries	Genes & Development	2002	16(19)	2518-2529
ZDB-PUB-021105-10	12397099	Poulain, M. and Lepage, T.	Mezzo, a paired-like homeobox protein is an immediate target of Nodal signalling and regulates endoderm specification in zebrafish	Development (Cambridge, England)	2002	129(21)	4901-4914
ZDB-PUB-021106-8	12412043	Peng, M.-Y., Wen, H.-J., Shih, L.-J., Kuo, C.-M., and Hwang, S.-P.L.	Myosin heavy chain expression in cranial, pectoral fin, and tail muscle regions of zebrafish embryos	Molecular reproduction and development	2002	63(4)	422-429
ZDB-PUB-021202-2	12464177	Doitsidou, M., Reichman-Fried, M., Stebler, J., Köprunner, M., Dörries, J., Meyer, D., Esguerra, C.V., Leung, T., and Raz, E.	Guidance of primordial germ cell migration by the chemokine SDF-1	Cell	2002	111(5)	647-659
ZDB-PUB-030115-24	12498688	Feldman, B., Concha, M.L., Saude, L., Parsons, M.J., Adams, R.J., Wilson, S.W., and Stemple, D.L.	Lefty antagonism of squint is essential for normal gastrulation	Current biology : CB	2002	12(24)	2129-2135
ZDB-PUB-030115-25	12498687	Chen, Y. and Schier, A.F.	Lefty proteins are long-range inhibitors of squint-mediated nodal signaling	Current biology : CB	2002	12(24)	2124-2128
ZDB-PUB-030128-2	11591315	Peterson, R.T., Mably, J.D., Chen, J.-N., and Fishman, M.C.	Convergence of distinct pathways to heart patterning reveals by the small molecule concentramide and the mutation heart-and-soul	Current biology : CB	2001	11	1481-1491
ZDB-PUB-030206-1	12571098	Gamse, J.T., Thisse, C., Thisse, B., and Halpern, M.E.	The parapineal mediates left-right asymmetry in the zebrafish diencephalon	Development (Cambridge, England)	2003	130	1059-1068
ZDB-PUB-030304-16	12588855	Hammond, K.L., Loynes, H.E., Folarin, A.A., Smith, J., and Whitfield, T.T.	Hedgehog signalling is required for correct anteroposterior patterning of the zebrafish otic vesicle	Development (Cambridge, England)	2003	130(7)	1403-1417
ZDB-PUB-030319-3	12642489	Dougan, S.T., Warga, R.M., Kane, D.A., Schier, A.F., and Talbot, W.S.	The role of the zebrafish nodal-related genes squint and cyclops in patterning of mesendoderm	Development (Cambridge, England)	2003	130(9)	1837-1851
ZDB-PUB-030325-1	12645931	Field, H.A., Ober, E.A., Roeser, T., and Stainier, D.Y.	Formation of the digestive system in zebrafish. I. Liver morphogenesis	Developmental Biology	2003	253(2)	279-290
ZDB-PUB-030408-5	12676324	Kilian, B., Mansukoski, H., Barbosa, F.C., Ulrich, F., Tada, M., and Heisenberg, C.P.	The role of Ppt/Wnt5 in regulating cell shape and movement during zebrafish gastrulation	Mechanisms of Development	2003	120(4)	467-476
ZDB-PUB-030425-22	12702646	Long, S., Ahmad, N., and Rebagliati, M.	The zebrafish nodal-related gene southpaw is required for visceral and diencephalic left-right asymmetry	Development (Cambridge, England)	2003	130(11)	2303-2316
ZDB-PUB-030502-1	11477699	Etheridge, L.A., Wu, T., Liang, J.O., Ekker, S.C., and Halpern, M.E.	Floor plate develops upon depletion of tiggy-winkle and sonic hedgehog	Genesis (New York, N.Y. : 2000)	2001	30(3)	164-169
ZDB-PUB-030527-24	12730129	Bisgrove, B.W., Morelli, S.H., and Yost, H.J.	Genetics of human laterality disorders: insights from vertebrate model systems	Annual review of genomics and human genetics	2003	4	1-32
ZDB-PUB-030606-2	12538515	Glickman, N.S., Kimmel, C.B., Jones, M.A., and Adams, R.J.	Shaping the zebrafish notochord	Development (Cambridge, England)	2003	130(5)	873-887
ZDB-PUB-030707-1	12768655	Ryan, K. and Chin, A.J.	T-box genes and cardiac development	Birth defects research. Part C, Embryo today : reviews	2003	69(1)	25-37
ZDB-PUB-030707-10	12835397	Wiellette, E.L. and Sive, H.	vhnf1 and Fgf signals synergize to specify rhombomere identity in the zebrafish hindbrain	Development (Cambridge, England)	2003	130(16)	3821-3829
ZDB-PUB-030715-7	12804607	Yamakoshi, K. and Shimoda, N.	PCR-based cloning of an intronless zebrafish no tail gene	Biochemical and Biophysical Research Communications	2003	306(2)	598-602
ZDB-PUB-030722-2	12713266	Handrigan, G.R.	Concordia discors: duality in the origin of the vertebrate tail	Journal of anatomy	2003	202(3)	255-267
ZDB-PUB-030728-11	12880634	Lewis, K.E. and Eisen, J.S.	From cells to circuits: development of the zebrafish spinal cord	Prog. Neurobiol.	2003	69(6)	419-449
ZDB-PUB-030728-18	12874125	Carreira-Barbosa, F., Concha, M.L., Takeuchi, M., Ueno, N., Wilson, S.W., and Tada, M.	Prickle 1 regulates cell movements during gastrulation and neuronal migration in zebrafish	Development (Cambridge, England)	2003	130(17)	4037-4046
ZDB-PUB-030730-12	12883008	Goering, L.M., Hoshijima, K., Hug, B., Bisgrove, B., Kispert, A., and Grunwald, D.J.	An interacting network of T-box genes directs gene expression and fate in the zebrafish mesoderm	Proceedings of the National Academy of Sciences of the United States of America	2003	100(16)	9410-9415
ZDB-PUB-030730-7	12885566	Chai, C., Liu, Y., and Chan, W.K.	Ff1b is required for the development of steroidogenic component of the zebrafish interrenal organ	Developmental Biology	2003	260(1)	226-244
ZDB-PUB-030812-4	12906787	Montero, J.-A., Killan, B., Chan, J., Bayliss, P.E., and Heisenberg, C.-P.	Phosphoinositide 3-kinase is required for process outgrowth and cell polarization of gastrulating mesendodermal cells	Current biology : CB	2003	13(15)	1279-1289
ZDB-PUB-030826-14	12925535	Ghosh, S., Moore, S., Bell, R.M., and Dush, M.	Functional analysis of a phosphatidic acid binding domain in human Raf-1 kinase : Mutations in the phosphatidate binding domain lead to tail and trunk abnormalities in developing zebrafish embryos	The Journal of biological chemistry	2003	278(46)	45690-45696
ZDB-PUB-030826-7	12930774	Trinh, L.A., Meyer, D., and Stainier, D.Y.	The Mix family homeodomain gene bonnie and clyde functions with other components of the Nodal signaling pathway to regulate neural patterning in zebrafish	Development (Cambridge, England)	2003	130(20)	4989-4998
ZDB-PUB-030924-4	14499649	Warga, R.M. and Kane, D.A.	One-eyed pinhead regulates cell motility independent of Squint/Cyclops signaling	Developmental Biology	2003	261(2)	391-411
ZDB-PUB-031001-1	14518000	Appel, B., Marasco, P., McClung, L.E., and Latimer, A.J.	lunatic fringe regulates delta-notch induction of hypochord in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2003	228(2)	281-286
ZDB-PUB-031001-15	12526755	Solnica-Krezel, L.	Vertebrate development: taming the nodal waves	Current biology : CB	2003	13(1)	R7-R9
ZDB-PUB-031009-7	14522874	Kunwar, P.S., Zimmerman, S., Bennett, J.T., Chen, Y., Whitman, M., and Schier, A.F.	Mixer/Bon and FoxH1/Sur have overlapping and divergent roles in Nodal signaling and mesendoderm induction	Development (Cambridge, England)	2003	130(23)	5589-5599
ZDB-PUB-031031-10	14579393	North, T.E. and Zon, L.I.	Modeling human hematopoietic and cardiovascular diseases in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2003	228(3)	568-583
ZDB-PUB-031119-13	14609954	Zhao, J., Cao, Y., Zhao, C., Postlethwait, J., and Meng, A.	An SP1-like transcription factor Spr2 acts downstream of Fgf signaling to mediate mesoderm induction	The EMBO journal	2003	22(22)	6078-6088
ZDB-PUB-040109-1	14711879	Mathieu, J., Griffin, K., Herbomel, P., Dickmeis, T., Strähle, U., Kimelman, D., Rosa, F.M., and Peyriéras, N.	Nodal and Fgf pathways interact through a positive regulatory loop and synergize to maintain mesodermal cell populations	Development (Cambridge, England)	2004	131(3)	629-641
ZDB-PUB-040109-3	14711414	Lunde, K., Belting, H.G., and Driever, W.	Zebrafish pou5f1/pou2, homolog of mammalian Oct4, functions in the endoderm specification cascade	Current biology : CB	2004	14(1)	48-55
ZDB-PUB-040216-18	14757641	Lewis, K.E., and Eisen, J.S.	Paraxial mesoderm specifies zebrafish primary motoneuron subtype identity	Development (Cambridge, England)	2004	131(4)	891-902
ZDB-PUB-040216-27	14729574	Bakkers, J., Kramer, C., Pothof, J., Quaedvlieg, N.E., Spaink, H.P., and Hammerschmidt, M.	Has2 is required upstream of Rac1 to govern dorsal migration of lateral cells during zebrafish gastrulation	Development (Cambridge, England)	2004	131(3)	525-537
ZDB-PUB-040217-2	12477932	Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences	Proceedings of the National Academy of Sciences of the United States of America	2002	99(26)	16899-903
ZDB-PUB-040220-1	15037315	Argenton, F., Giudici, S., Deflorian, G., Cimbro, S., Cotelli, F., and Beltrame, M.	Ectopic expression and knockdown of a zebrafish sox21 reveal its role as a transcriptional repressor in early development	Mechanisms of Development	2004	121(2)	131-142
ZDB-PUB-040223-1	14975724	Nambiar, R.M., and Henion, P.D.	Sequential antagonism of early and late Wnt-signaling by zebrafish colgate promotes dorsal and anterior fates	Developmental Biology	2004	267(1)	165-80
ZDB-PUB-040402-4	15056614	Matsuda, N., and Mishina, M.	Identification of chaperonin CCT{gamma} subunit as a determinant of retinotectal development by whole-genome subtraction cloning from zebrafish no tectal neuron mutant	Development (Cambridge, England)	2004	131(9)	1913-1925
ZDB-PUB-040405-3	15084459	Hashimoto, H., Rebagliati, M., Ahmad, N., Muraoka, O., Kurokawa, T., Hibi, M., and Suzuki, T.	The Cerberus/Dan-family protein Charon is a negative regulator of Nodal signaling during left-right patterning in zebrafish	Development (Cambridge, England)	2004	131(8)	1741-1753
ZDB-PUB-040416-4	15084283	Amack, J.D., and Yost, H.J.	The T box transcription factor no tail in ciliated cells controls zebrafish left-right asymmetry	Current biology : CB	2004	14(8)	685-690
ZDB-PUB-040429-6	15110047	Nojima, H., Shimizu, T., Kim, C.H., Yabe, T., Bae, Y.K., Muraoka, O., Hirata, T., Chitnis, A., Hirano, T., and Hibi, M.	Genetic evidence for involvement of maternally derived Wnt canonical signaling in dorsal determination in zebrafish	Mechanisms of Development	2004	121(4)	371-386
ZDB-PUB-040510-3	15129296	Yamashita, S., Miyagi, C., Fukada, T., Kagara, N., Che, Y.S., and Hirano, T.	Zinc transporter LIVI controls epithelial-mesenchymal transition in zebrafish gastrula organizer	Nature	2004	429(6989)	298-302
ZDB-PUB-040601-6	15162505	Babb, S.G., and Marrs, J.A.	E-cadherin regulates cell movements and tissue formation in early zebrafish embryos	Developmental Dynamics : an official publication of the American Association of Anatomists	2004	230(2)	263-277
ZDB-PUB-040609-16	15177026	Dosch, R., Wagner, D.S., Mintzer, K.A., Runke, G., Wiemelt, A.P., and Mullins, M.C.	Maternal Control of Vertebrate Development before the Midblastula Transition; Mutants from the Zebrafish I	Developmental Cell	2004	6(6)	771-780
ZDB-PUB-040617-5	15196956	Cao, Y., Zhao, J., Sun, Z., Zhao, Z., Postlethwait, J., and Meng, A.	fgf17b, a novel member of Fgf family, helps patterning zebrafish embryos	Developmental Biology	2004	271(1)	130-143
ZDB-PUB-040624-2	15169890	Correa, R.G., Tergaonkar, V., Ng, J.K., Dubova, I., Izpisúa Belmonte, J.C., and Verma, I.M.	Characterization of NF-kappa B/I kappa B proteins in zebra fish and their involvement in notochord development	Molecular and cellular biology	2004	24(12)	5257-5268
ZDB-PUB-040709-8	15240553	Szeto, D.P., and Kimelman, D.	Combinatorial gene regulation by Bmp and Wnt in zebrafish posterior mesoderm formation	Development (Cambridge, England)	2004	131(15)	3751-3760
ZDB-PUB-040713-3	15242793	Glavic, A., Maris Honoré, S., Gloria Feijóo, C., Bastidas, F., Allende, M.L., and Mayor, R.	Role of BMP signaling and the homeoprotein iroquois in the specification of the cranial placodal field	Developmental Biology	2004	272(1)	89-103
ZDB-PUB-040721-7	15262889	Kudoh, T., Concha, M.L., Houart, C., Dawid, I.B., and Wilson, S.W.	Combinatorial Fgf and Bmp signalling patterns the gastrula ectoderm into prospective neural and epidermal domains	Development (Cambridge, England)	2004	131(15)	3581-3592
ZDB-PUB-040811-4	15302595	Zhang, C., Basta, T., Hernandez-Lagunas, L., Simpson, P., Stemple, D.L., Artinger, K.B., and Klymkowsky, M.W.	Repression of nodal expression by maternal B1-type SOXs regulates germ layer formation in Xenopus and zebrafish	Developmental Biology	2004	273(1)	23-37
ZDB-PUB-040916-5	15366022	Ramel, M.C., Buckles, G.R., and Lekven, A.C.	Conservation of structure and functional divergence of duplicated Wnt8s in pufferfish	Developmental Dynamics : an official publication of the American Association of Anatomists	2004	231(2)	441-448
ZDB-PUB-041004-2	15380064	Daggett, D.F., Boyd, C.A,. Gautier, P., Bryson-Richardson, R.J., Thisse, C., Thisse, B., Amacher, S.L., and Currie, P.D.	Developmentally restricted actin-regulatory molecules control morphogenetic cell movements in the zebrafish gastrula	Current biology : CB	2004	14(18)	632-638
ZDB-PUB-041006-8	15459392	Zhang, L., Zhou, H., Su, Y., Sun, Z., Zhang, H., Zhang, L., Zhang, Y., Ning, Y., Chen, Y.G., and Meng, A.	Zebrafish Dpr2 inhibits mesoderm induction by promoting degradation of nodal receptors	Science (New York, N.Y.)	2004	306(5693)	114-117
ZDB-PUB-041108-3	15529176	Nowak, M., Köster, C., and Hammerschmidt, M.	Perp is required for tissue-specific cell survival during zebrafish development	Cell death and differentiation	2005	12(1)	52-64
ZDB-PUB-041109-1	14517294	Liu, Y.W., Gao, W., Teh, H.L., Tan, J.H., and Chan, W.K.	Prox1 is a novel coregulator of Ff1b and is involved in the embryonic development of the zebra fish interrenal primordium	Molecular and cellular biology	2003	23(20)	7243-7255
ZDB-PUB-041111-2	15531361	Ragland, J.W., and Raible, D.W.	Signals derived from the underlying mesoderm are dispensable for zebrafish neural crest induction	Developmental Biology	2004	276(1)	16-30
ZDB-PUB-041111-5	15532058	Rentzsch, F., Bakkers, J., Kramer, C., and Hammerschmidt, M.	Fgf signaling induces posterior neuroectoderm independently of Bmp signaling inhibition	Developmental Dynamics : an official publication of the American Association of Anatomists	2004	231(4)	750-757
ZDB-PUB-041115-4	15539488	Kapsimali, M., Caneparo, L., Houart, C., and Wilson, S.W.	Inhibition of Wnt/Axin/{beta}-catenin pathway activity promotes ventral CNS midline tissue to adopt hypothalamic rather than floorplate identity	Development (Cambridge, England)	2004	131(23)	5923-5933
ZDB-PUB-041208-10	15581883	Kaji, T., and Artinger, K.B.	dlx3b and dlx4b function in the development of Rohon-Beard sensory neurons and trigeminal placode in the zebrafish neurula	Developmental Biology	2004	276(2)	523-540
ZDB-PUB-041216-3	15590746	Ninkovic, J., Tallafuss, A., Leucht, C., Topczewski, J., Tannhäuser, B., Solnica-Krezel, L., and Bally-Cuif, L.	Inhibition of neurogenesis at the zebrafish midbrain-hindbrain boundary by the combined and dose-dependent activity of a new hairy/E(spl) gene pair	Development (Cambridge, England)	2005	132(1)	75-88
ZDB-PUB-041228-3	15602699	Eivers, E., McCarthy, K., Glynn, C., Nolan, C.M., and Byrnes, L.	Insulin-like growth factor (IGF) signalling is required for early dorso-anterior development of the zebrafish embryo	The International journal of developmental biology	2004	48(10)	1131-1140
ZDB-PUB-050104-6	15623554	Kawahara, A., Che, Y.S., Hanaoka, R., Takeda, H., and Dawid, I.B.	Zebrafish GADD45{beta} genes are involved in somite segmentation	Proceedings of the National Academy of Sciences of the United States of America	2005	102(2)	361-366
ZDB-PUB-050104-8	15623803	Wilm, T.P., and Solnica-Krezel, L.	Essential roles of a zebrafish prdm1/blimp1 homolog in embryo patterning and organogenesis	Development (Cambridge, England)	2005	132(2)	393-404
ZDB-PUB-050106-5	15630025	Matsui, T., Raya, A., Kawakami, Y., Callol-Massot, C., Capdevila, J., Rodriguez-Esteban, C., Izpisúa Belmonte, J.C.	Noncanonical Wnt signaling regulates midline convergence of organ primordia during zebrafish development	Genes & Development	2005	19(1)	164-175
ZDB-PUB-050119-7	15649361	Le Good, J.A., Joubin, K., Giraldez, A.J., Ben-Haim, N., Beck, S., Chen, Y., Schier, A.F., and Constam, D.B.	Nodal stability determines signaling range	Current biology : CB	2005	15(1)	31-36
ZDB-PUB-050202-3	15680360	Emoto, Y., Wada, H., Okamoto, H., Kudo, A., and Imai, Y.	Retinoic acid-metabolizing enzyme Cyp26a1 is essential for determining territories of hindbrain and spinal cord in zebrafish	Developmental Biology	2005	278(2)	415-427
ZDB-PUB-050209-9	15694307	Aizawa, H., Bianco, I.H., Hamaoka, T., Miyashita, T., Uemura, O., Concha, M.L., Russell, C., Wilson, S.W., and Okamoto, H.	Laterotopic Representation of Left-Right Information onto the Dorso-Ventral Axis of a Zebrafish Midbrain Target Nucleus	Current biology : CB	2005	15(3)	238-243
ZDB-PUB-050211-2	15703279	Rhinn, M., Lun, K., Luz, M., Werner, M., and Brand, M.	Positioning of the midbrain-hindbrain boundary organizer through global posteriorization of the neuroectoderm mediated by Wnt8 signaling	Development (Cambridge, England)	2005	132(6)	1261-1272
ZDB-PUB-050211-3	15703282	Montero, J.A., Carvalho, L., Wilsch-Bräuninger, M., Kilian, B., Mustafa, C., and Heisenberg, C.P.	Shield formation at the onset of zebrafish gastrulation	Development (Cambridge, England)	2005	132(6)	1187-1198
ZDB-PUB-050215-4	15707958	Komoike, Y., Kawamura, A., Shindo, N., Sato, C., Satoh, J., Shiurba, R., and Higashinakagawa, T.	Zebrafish Polycomb group gene ph2alpha is required for epiboly and tailbud formation acting downstream of FGF signaling	Biochemical and Biophysical Research Communications	2005	328(4)	858-866
ZDB-PUB-050215-5	15708554	Londin, E.R., Niemiec, J., and Sirotkin, H.I.	Chordin, FGF signaling, and mesodermal factors cooperate in zebrafish neural induction	Developmental Biology	2005	279(1)	1-19
ZDB-PUB-050221-4	15716348	Essner, J.J., Amack, J.D., Nyholm, M.K., Harris, E.B., and Yost, H.J.	Kupffer's vesicle is a ciliated organ of asymmetry in the zebrafish embryo that initiates left-right development of the brain, heart and gut	Development (Cambridge, England)	2005	132(6)	1247-1260
ZDB-PUB-050303-4	15739223	Latimer, A.J., Shin, J., and Appel, B.	her9 promotes floor plate development in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2005	232(4)	1098-1104
ZDB-PUB-050318-16	15768401	McFarland, K.N., Warga, R.M., and Kane, D.A.	Genetic locus half baked is necessary for morphogenesis of the ectoderm	Developmental Dynamics : an official publication of the American Association of Anatomists	2005	233(2)	390-406
ZDB-PUB-050318-19	15772132	Thorpe, C.J., Weidinger, G., and Moon, R.T.	Wnt/β-catenin regulation of the Sp1-related transcription factor sp5l promotes tail development in zebrafish	Development (Cambridge, England)	2005	132(8)	1763-1772
ZDB-PUB-050419-11	15833916	Schäfer, M., Rembold, M., Wittbrodt, J., Schartl, M., and Winkler, C.	Medial floor plate formation in zebrafish consists of two phases and requires trunk-derived Midkine-a	Genes & Development	2005	19(8)	897-902
ZDB-PUB-050419-7	15829520	Pyati, U.J., Webb, A.E., and Kimelman, D.	Transgenic zebrafish reveal stage-specific roles for Bmp signaling in ventral and posterior mesoderm development	Development (Cambridge, England)	2005	132(10)	2333-2343
ZDB-PUB-050427-6	15848392	Bardet, P.L., Horard, B., Laudet, V., and Vanacker, J.M.	The ERRalpha orphan nuclear receptor controls morphogenetic movements during zebrafish gastrulation	Developmental Biology	2005	281(1)	102-111
ZDB-PUB-050518-1	15890328	Sumanas, S., Zhang, B., Dai, R., and Lin, S.	15-Zinc finger protein Bloody Fingers is required for zebrafish morphogenetic movements during neurulation	Developmental Biology	2005	283(1)	85-96
ZDB-PUB-050523-11	15906372	Zhao, C., Qi, J., and Meng, A.	Characterization and expression pattern of two zebrafish atf7 genes	Developmental Dynamics : an official publication of the American Association of Anatomists	2005	233(3)	1157-1162
ZDB-PUB-050523-9	15905406	Kawamura, A., Koshida, S., Hijikata, H., Sakaguchi, T., Kondoh, H., and Takada, S.	Zebrafish Hairy/Enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites	Genes & Development	2005	19(10)	1156-1161
ZDB-PUB-050607-11	15933901	Yamakoshi, K., Shishido, Y., and Shimoda, N.	Generation of Aberrant Transcripts of and Free DNA Ends in Zebrafish no tail Gene	Marine biotechnology (New York, N.Y.)	2005	7(3)	163-172
ZDB-PUB-050607-9	15932752	Albertson, R.C., and Yelick, P.C.	Roles for fgf8 signaling in left-right patterning of the visceral organs and craniofacial skeleton	Developmental Biology	2005	283(2)	310-321
ZDB-PUB-050628-2	18248225	Knowlton, M.N. and Kelly, G.M.	Zebrafish Mir Antagonizes Frizzled 7-Induced Gastrulation Defects	Zebrafish	2004	1(2)	133-144
ZDB-PUB-050711-3	15992547	Sarmah, B., Latimer, A.J., Appel, B., and Wente, S.R.	Inositol polyphosphates regulate zebrafish left-right asymmetry	Developmental Cell	2005	9(1)	133-145
ZDB-PUB-050718-9	16019189	Zhu, S., Liu, L., Korzh, V., Gong, Z., and Low, B.C.	RhoA acts downstream of Wnt5 and Wnt11 to regulate convergence and extension movements by involving effectors Rho Kinase and Diaphanous: Use of zebrafish as an in vivo model for GTPase signaling	Cellular Signalling	2006	18(3)	359-372
ZDB-PUB-050725-1	16026540	Liu, W.Y., Wang, Y., Sun, Y.H., Wang, Y., Wang, Y.P., Chen, S.P., and Zhu, Z.Y.	Efficient RNA interference in zebrafish embryos using siRNA synthesized with SP6 RNA polymerase	Development, growth & differentiation	2005	47(5)	323-331
ZDB-PUB-050727-13	16033799	Fong, S.H., Emelyanov, A., Teh, C., and Korzh, V.	Wnt signalling mediated by Tbx2b regulates cell migration during formation of the neural plate	Development (Cambridge, England)	2005	132(16)	3587-3596
ZDB-PUB-050803-8	16051294	Teraoka, H., Urakawa, S., Nanba, S., Nagai, Y., Dong, W., Imagawa, T., Tanguay, R.L., Svoboda, K., Handley-Goldstone, H.M., Stegeman, J.J., and Hiraga, T.	Muscular contractions in the zebrafish embryo are necessary to reveal thiuram-induced notochord distortions	Toxicology and applied pharmacology	2006	212(1)	24-34
ZDB-PUB-050818-15	16102743	Maves, L., and Kimmel, C.B.	Dynamic and sequential patterning of the zebrafish posterior hindbrain by retinoic acid	Developmental Biology	2005	285(2)	593-605
ZDB-PUB-050823-6	16109975	Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S.	The zebrafish gene map defines ancestral vertebrate chromosomes	Genome research	2005	15(9)	1307-1314
ZDB-PUB-050907-4	16129585	Challa, A.K., McWhorter, M.L., Wang, C., Seeger, M.A., and Beattie, C.E.	Robo3 isoforms have distinct roles during zebrafish development	Mechanisms of Development	2005	122(10)	1073-1086
ZDB-PUB-050907-5	16129886	Blaser, H., Eisenbeiss, S., Neumann, M., Reichman-Fried, M., Thisse, B., Thisse, C., and Raz, E.	Transition from non-motile behaviour to directed migration during early PGC development in zebrafish	Journal of Cell Science	2005	118(17)	4027-4038
ZDB-PUB-050913-5	16154557	Lyman Gingerich, J., Westfall, T.A., Slusarski, D.C., and Pelegri, F.	hecate, a zebrafish maternal effect gene, affects dorsal organizer induction and intracellular calcium transient frequency	Developmental Biology	2005	286(2)	427-439
ZDB-PUB-050920-4	16162652	Honjo, Y., and Eisen, J.S.	Slow muscle regulates the pattern of trunk neural crest migration in zebrafish	Development (Cambridge, England)	2005	132(20)	4461-4470
ZDB-PUB-051005-6	16198297	Ulrich, F., Krieg, M., Schotz, E.M., Link, V., Castanon, I., Schnabel, V., Taubenberger, A., Mueller, D., Puech, PH., and Heisenberg, C.P.	Wnt11 Functions in Gastrulation by Controlling Cell Cohesion through Rab5c and E-Cadherin	Developmental Cell	2005	9(4)	555-564
ZDB-PUB-051012-21	16216234	Ramel, M.C., Buckles, G.R., Baker, K.D., and Lekven, A.C.	WNT8 and BMP2B co-regulate non-axial mesoderm patterning during zebrafish gastrulation	Developmental Biology	2005	287(2)	237-248
ZDB-PUB-051012-23	16216239	Bisgrove, B.W., Snarr, B.S., Emrazian, A., and Yost, H.J.	Polaris and Polycystin-2 in dorsal forerunner cells and Kupffer's vesicle are required for specification of the zebrafish left-right axis	Developmental Biology	2005	287(2)	274-288
ZDB-PUB-051012-7	16207754	Sawada, A., Nishizaki, Y., Sato, H., Yada, Y., Nakayama, R., Yamamoto, S., Nishioka, N., Kondoh, H., and Sasaki, H.	Tead proteins activate the Foxa2 enhancer in the node in cooperation with a second factor	Development (Cambridge, England)	2005	132(21)	4719-4729
ZDB-PUB-060113-2	16391234	Cha, Y.I., Kim, S.H., Sepich, D., Buchanan, F.G., Solnica-Krezel, L., and Dubois, R.N.	Cyclooxygenase-1-derived PGE2 promotes cell motility via the G-protein-coupled EP4 receptor during vertebrate gastrulation	Genes & Development	2006	20(1)	77-86
ZDB-PUB-060124-13	16408288	Okuda, Y., Yoda, H., Uchikawa, M., Furutani-Seiki, M., Takeda, H., Kondoh, H., Kamachi, Y.	Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution	Developmental Dynamics : an official publication of the American Association of Anatomists	2006	235(3)	811-825
ZDB-PUB-060124-9	16406520	Beis, D., and Stainier, D.Y.	In vivo cell biology: following the zebrafish trend	Trends in cell biology	2006	16(2)	105-112
ZDB-PUB-060130-8	16437115	Hsu, H.J., Liang, M.R., Chen, C.T., and Chung, B.C.	Pregnenolone stabilizes microtubules and promotes zebrafish embryonic cell movement	Nature	2006	439(7075)	480-483
ZDB-PUB-060207-8	16448862	Tallafuss, A., Hale, L.A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H.	Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development	Gene expression patterns : GEP	2006	6(5)	556-565
ZDB-PUB-060313-14	16513105	Ramasamy, S., Wang, H., Quach, H.N., and Sampath, K.	Zebrafish Staufen1 and Staufen2 are required for the survival and migration of primordial germ cells	Developmental Biology	2006	292(2)	393-406
ZDB-PUB-060313-5	16502420	Takamiya, M., and Campos-Ortega, J.A.	Hedgehog signalling controls zebrafish neural keel morphogenesis via its level-dependent effects on neurogenesis	Developmental Dynamics : an official publication of the American Association of Anatomists	2006	235(4)	978-997
ZDB-PUB-060403-8	16569702	Leskow, F.C., Holloway, B.A., Wang, H., Mullins, M.C., and Kazanietz, M.G.	The zebrafish homologue of mammalian chimerin Rac-GAPs is implicated in epiboly progression during development	Proceedings of the National Academy of Sciences of the United States of America	2006	103(14)	5373-5378
ZDB-PUB-060501-10	16638810	Link, V., Carvalho, L., Castanon, I., Stockinger, P., Shevchenko, A., and Heisenberg, C.P.	Identification of regulators of germ layer morphogenesis using proteomics in zebrafish	Journal of Cell Science	2006	119(10)	2073-2083
ZDB-PUB-060508-13	16672337	Gupta, S., Zhu, H., Zon, L.I., and Evans, T.	BMP signaling restricts hemato-vascular development from lateral mesoderm during somitogenesis	Development (Cambridge, England)	2006	133(11)	2177-2187
ZDB-PUB-060517-16	16684517	Ho, D.M., Chan, J., Bayliss, P., and Whitman, M.	Inhibitor-resistant type I receptors reveal specific requirements for TGF-beta signaling in vivo	Developmental Biology	2006	295(2)	730-742
ZDB-PUB-060517-27	16696945	Sun, Z., Jin, P., Tian, T., Gu, Y., Chen, Y.G., and Meng, A.	Activation and roles of ALK4/ALK7-mediated maternal TGFbeta signals in zebrafish embryo	Biochemical and Biophysical Research Communications	2006	345(2)	694-703
ZDB-PUB-060526-5	16701984	Jing, X.H., Zhou, S.M., Wang, W.Q., and Chen, Y.	Mechanisms underlying long- and short-range nodal signaling in Zebrafish	Mechanisms of Development	2006	123(5)	388-394
ZDB-PUB-060616-40	16759737	Schild-Prufert, K., Giegerich, M., Schafer, M., Winkler, C., and Krohne, G.	Structural and functional characterization of the zebrafish lamin B receptor	European journal of cell biology	2006	85(8)	813-824
ZDB-PUB-060616-55	16774994	Gibert, Y., Gajewski, A., Meyer, A., and Begemann, G.	Induction and prepatterning of the zebrafish pectoral fin bud requires axial retinoic acid signaling	Development (Cambridge, England)	2006	133(14)	2649-2659
ZDB-PUB-060616-57	16775002	Reim, G., and Brand, M.	Maternal control of vertebrate dorsoventral axis formation and epiboly by the POU domain protein Spg/Pou2/Oct4	Development (Cambridge, England)	2006	133(14)	2757-2770
ZDB-PUB-060703-1	16794032	Koppen, M., Fernandez, B.G., Carvalho, L., Jacinto, A., and Heisenberg, C.P.	Coordinated cell-shape changes control epithelial movement in zebrafish and Drosophila	Development (Cambridge, England)	2006	133(14)	2671-2681
ZDB-PUB-060703-4	16797628	Tilton, F., La Du, J.K., Vue, M., Alzarban, N., and Tanguay, R.L.	Dithiocarbamates have a common toxic effect on zebrafish body axis formation	Toxicology and applied pharmacology	2006	216(1)	55-68
ZDB-PUB-060724-19	16847349	Szeto, D.P., and Kimelman, D.	The regulation of mesodermal progenitor cell commitment to somitogenesis subdivides the zebrafish body musculature into distinct domains	Genes & Development	2006	20(14)	1923-1932
ZDB-PUB-060731-20	16873584	Maegawa, S., Varga, M., and Weinberg, E.S.	FGF signaling is required for {beta}-catenin-mediated induction of the zebrafish organizer	Development (Cambridge, England)	2006	133(16)	3265-3276
ZDB-PUB-060807-3	16876779	Latimer, A.J., and Appel, B.	Notch signaling regulates midline cell specification and proliferation in zebrafish	Developmental Biology	2006	298(2)	392-402
ZDB-PUB-060816-11	16892036	Topczewska, J.M., Postovit, L.M., Margaryan, N.V., Sam, A., Hess, A.R., Wheaton, W.W., Nickoloff, B.J., Topczewski, J., and Hendrix, M.J.	Embryonic and tumorigenic pathways converge via Nodal signaling: role in melanoma aggressiveness	Nature medicine	2006	12(8)	925-932
ZDB-PUB-060816-17	16894597	Lyman Gingerich, J., Lindeman, R., Putiri, E., Stolzmann, K., and Pelegri, F.	Analysis of axis induction mutant embryos reveals morphogenetic events associated with zebrafish yolk extension formation	Developmental Dynamics : an official publication of the American Association of Anatomists	2006	235(10)	2749-2760
ZDB-PUB-060816-18	16894598	Eroglu, B., Wang, G., Tu, N., Sun, X., and Mivechi, N.F.	Critical role of Brg1 member of the SWI/SNF chromatin remodeling complex during neurogenesis and neural crest induction in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2006	235(10)	2722-2735
ZDB-PUB-060816-26	16904099	Machingo, Q.J., Fritz, A., and Shur, B.D.	A beta1,4-galactosyltransferase is required for convergent extension movements in zebrafish	Developmental Biology	2006	297(2)	471-482
ZDB-PUB-061020-28	17026981	Mizoguchi, T., Izawa, T., Kuroiwa, A., and Kikuchi, Y.	Fgf signaling negatively regulates Nodal-dependent endoderm induction in zebrafish	Developmental Biology	2006	300(2)	612-622
ZDB-PUB-061020-41	17038485	Peeters, H., Voz, M.L., Verschueren, K., De Cat, B., Pendeville, H., Thienpont, B., Schellens, A., Belmont, J.W., David, G., Van De Ven, W.J., Fryns, J.P., Gewillig, M., Huylebroeck, D., Peers, B., and Devriendt, K.	Sesn1 is a Novel Gene for Left-Right Asymmetry and Mediating Nodal Signaling	Human molecular genetics	2006	15(22)	3369-3377
ZDB-PUB-061020-8	17013396	Oishi, I., Kawakami, Y., Raya, A., Callol-Massot, C., and Izpisúa Belmonte, J.C.	Regulation of primary cilia formation and left-right patterning in zebrafish by a noncanonical Wnt signaling mediator, duboraya	Nature Genetics	2006	38(11)	1316-1322
ZDB-PUB-061108-10	17081734	Muyskens, J.B., and Kimmel, C.B.	Tbx16 cooperates with Wnt11 in assembling the zebrafish organizer	Mechanisms of Development	2007	124(1)	35-42
ZDB-PUB-061205-15	17123513	Deniziak, M., Thisse, C., Rederstorff, M., Hindelang, C., Thisse, B., and Lescure, A.	Loss of selenoprotein N function causes disruption of muscle architecture in the zebrafish embryo	Experimental cell research	2007	313(1)	156-167
ZDB-PUB-061222-1	10490647	Wang, J.M., Prefontaine, G.G., Lemieux, M.E., Pope, L., Akimenko, M.A., and Hache, R.J.	Developmental effects of ectopic expression of the glucocorticoid receptor DNA binding domain are alleviated by an amino acid substitution that interferes with homeodomain binding	Molecular and cellular biology	1999	19(10)	7106-7122
ZDB-PUB-061227-31	17157484	Jopling, C., and den Hertog, J.	Essential role for Csk upstream of Fyn and Yes in zebrafish gastrulation	Mechanisms of Development	2007	124(2)	129-136
ZDB-PUB-061227-6	17130287	Witzel, S., Zimyanin, V., Carreira-Barbosa, F., Tada, M., and Heisenberg, C.P.	Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane	The Journal of cell biology	2006	175(5)	791-802
ZDB-PUB-070122-23	17208216	Lin, X., Rinaldo, L., Fazly, A.F., and Xu, X.	Depletion of Med10 enhances Wnt and suppresses Nodal signaling during zebrafish embryogenesis	Developmental Biology	2007	303(2)	536-548
ZDB-PUB-070122-28	17210915	Takeuchi, J.K., Lickert, H., Bisgrove, B.W., Sun, X., Yamamoto, M., Chawengsaksophak, K., Hamada, H., Yost, H.J., Rossant, J., and Bruneau, B.G.	Baf60c is a nuclear Notch signaling component required for the establishment of left-right asymmetry	Proceedings of the National Academy of Sciences of the United States of America	2007	104(3)	846-851
ZDB-PUB-070122-40	17219402	Songhet, P., Adzic, D., Reibe, S., and Rohr, K.B.	fgf1 is required for normal differentiation of erythrocytes in zebrafish primitive hematopoiesis	Developmental Dynamics : an official publication of the American Association of Anatomists	2007	236(3)	633-643
ZDB-PUB-070212-40	17287831	Liu, Q.Y., Wu, Z.L., Lv, W.J., Yan, Y.C., and Li, Y.P.	Developmental expression of Cyclin H and Cdk7 in zebrafish: the essential role of Cyclin H during early embryo development	Cell Research	2007	17(2)	163-173
ZDB-PUB-070303-33	17322405	Caneparo, L., Huang, Y.L., Staudt, N., Tada, M., Ahrendt, R., Kazanskaya, O., Niehrs, C., and Houart, C.	Dickkopf-1 regulates gastrulation movements by coordinated modulation of Wnt/betacatenin and Wnt/PCP activities, through interaction with the Dally-like homolog Knypek	Genes & Development	2007	21(4)	465-480
ZDB-PUB-070303-6	17293535	Huang, H., Lu, F.I., Jia, S., Meng, S., Cao, Y., Wang, Y., Ma, W., Yin, K., Wen, Z., Peng, J., Thisse, C., Thisse, B., and Meng, A.	Amotl2 is essential for cell movements in zebrafish embryo and regulates c-Src translocation	Development (Cambridge, England)	2007	134(5)	979-988
ZDB-PUB-070303-7	17294249	Pei, D.S., Sun, Y.H., Long, Y., and Zhu, Z.Y.	Inhibition of no tail (ntl) gene expression in zebrafish by external guide sequence (EGS) technique	Molecular biology reports	2008	35(2)	139-143
ZDB-PUB-070310-7	17336901	Tsai, I.C., Amack, J.D., Gao, Z.H., Band, V., Yost, H.J., and Virshup, D.M.	A Wnt-CKIε-Rap1 Pathway Regulates Gastrulation by Modulating SIPA1L1, a Rap GTPase Activating Protein	Developmental Cell	2007	12(3)	335-347
ZDB-PUB-070310-8	17336905	Zeng, X.X., Wilm, T.P., Sepich, D.S., and Solnica-Krezel, L.	Apelin and Its Receptor Control Heart Field Formation during Zebrafish Gastrulation	Developmental Cell	2007	12(3)	391-402
ZDB-PUB-070330-39	17391517	Hagos, E.G., and Dougan, S.T.	Time-dependent patterning of the mesoderm and endoderm by Nodal signals in zebrafish	BMC Developmental Biology	2007	7(1)	22
ZDB-PUB-070409-26	17412835	Kida, Y.S., Sato, T., Miyasaka, K.Y., Suto, A., and Ogura, T.	Daam1 regulates the endocytosis of EphB during the convergent extension of the zebrafish notochord	Proceedings of the National Academy of Sciences of the United States of America	2007	104(16)	6708-6713
ZDB-PUB-070409-6	17394599	Besser, J., Leito, J.T., van der Meer, D.L., and Bagowski, C.P.	Tip-1 induces filopodia growth and is important for gastrulation movements during zebrafish development	Development, growth & differentiation	2007	49(3)	205-214
ZDB-PUB-070409-7	17395172	Chocron, S., Verhoeven, M.C., Rentzsch, F., Hammerschmidt, M., and Bakkers, J.	Zebrafish Bmp4 regulates left-right asymmetry at two distinct developmental time points	Developmental Biology	2007	305(2)	577-588
ZDB-PUB-070504-2	17442698	Shu, X., Huang, J., Dong, Y., Choi, J., Langenbacher, A., and Chen, J.N.	Na,K-ATPase α2 and Ncx4a regulate zebrafish left-right patterning	Development (Cambridge, England)	2007	134(10)	1921-1930
ZDB-PUB-070601-1	16890162	Xiong, B., Rui, Y., Zhang, M., Shi, K., Jia, S., Tian, T., Yin, K., Huang, H., Lin, S., Zhao, X., Chen, Y., Chen, Y.G., Lin, S.C., and Meng, A.	Tob1 controls dorsal development of zebrafish embryos by antagonizing maternal beta-catenin transcriptional activity	Developmental Cell	2006	11(2)	225-238
ZDB-PUB-070614-15	17530925	Robu, M.E., Larson, J.D., Nasevicius, A., Beiraghi, S., Brenner, C., Farber, S.A., and Ekker, S.C.	p53 activation by knockdown technologies	PLoS Genetics	2007	3(5)	e78
ZDB-PUB-070614-9	17522258	Ueno, S., Weidinger, G., Osugi, T., Kohn, A.D., Golob, J.L., Pabon, L., Reinecke, H., Moon, R.T., and Murry, C.E.	Biphasic role for Wnt/beta-catenin signaling in cardiac specification in zebrafish and embryonic stem cells	Proceedings of the National Academy of Sciences of the United States of America	2007	104(23)	9685-9690
ZDB-PUB-070620-2	16136187	Saúde, L., Lourenço, R., Gonçalves, A., and Palmeirim, I.	terra is a left-right asymmetry gene required for left-right synchronization of the segmentation clock	Nature cell biology	2005	7(9)	918-920
ZDB-PUB-070629-17	17576618	Plaster, N., Sonntag, C., Schilling, T.F., and Hammerschmidt, M.	REREa/Atrophin-2 interacts with histone deacetylase and Fgf8 signaling to regulate multiple processes of zebrafish development	Developmental Dynamics : an official publication of the American Association of Anatomists	2007	236(7)	1891-1904
ZDB-PUB-070629-32	17592114	Miyasaka, K.Y., Kida, Y.S., Sato, T., Minami, M., and Ogura, T.	Csrp1 regulates dynamic cell movements of the mesendoderm and cardiac mesoderm through interactions with Dishevelled and Diversin	Proceedings of the National Academy of Sciences of the United States of America	2007	104(27)	11274-11279
ZDB-PUB-070711-15	17599725	Mabee, P.M., Arratia, G., Coburn, M., Haendel, M., Hilton, E.J., Lundberg, J.G., Mayden, R.L., Rios, N., and Westerfield, M.	Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish	Journal of experimental zoology. Part B, Molecular and developmental evolution	2007	308(5)	655-668
ZDB-PUB-070726-1	14666513	Yamakoshi, K., and Shimoda, N.	De novo DNA methylation at the CpG island of the zebrafish no tail gene	Genesis (New York, N.Y. : 2000)	2003	37(4)	195-202
ZDB-PUB-070806-16	17654709	Gourronc, F., Ahmad, N., Nedza, N., Eggleston, T., and Rebagliati, M.	Nodal activity around Kupffer's vesicle depends on the T-box transcription factors notail and spadetail and on notch signaling	Developmental Dynamics : an official publication of the American Association of Anatomists	2007	236(8)	2131-2146
ZDB-PUB-070813-31	17689523	Van Raay, T.J., Coffey, R.J., and Solnica-Krezel, L.	Zebrafish Naked1 and Naked2 antagonize both canonical and non-canonical Wnt signaling	Developmental Biology	2007	309(2)	151-168
ZDB-PUB-070820-19	17703193	Ferg, M., Sanges, R., Gehrig, J., Kiss, J., Bauer, M., Lovas, A., Szabo, M., Yang, L., Straehle, U., Pankratz, M.J., Olasz, F., Stupka, E., and Müller, F.	The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish	The EMBO journal	2007	26(17)	3945-3956
ZDB-PUB-070827-25	17716875	Nambiar, R.M., Ignatius, M.S., and Henion, P.D.	Zebrafish colgate/hdac1 functions in the non-canonical Wnt pathway during axial extension and in Wnt-independent branchiomotor neuron migration	Mechanisms of Development	2007	124(9-10)	682-698
ZDB-PUB-070827-28	17717538	Shestopalov, I.A., Sinha, S., and Chen, J.K.	Light-controlled gene silencing in zebrafish embryos	Nature Chemical Biology	2007	3(10)	650-651
ZDB-PUB-070907-21	17761518	McReynolds, L.J., Gupta, S., Figueroa, M.E., Mullins, M.C., and Evans, T.	Smad1 and Smad5 differentially regulate embryonic hematopoiesis	Blood	2007	110(12)	3881-3890
ZDB-PUB-070907-29	17765888	Amack, J.D., Wang, X., and Yost, H.J.	Two T-box genes play independent and cooperative roles to regulate morphogenesis of ciliated Kupffer's vesicle in zebrafish	Developmental Biology	2007	310(2)	196-210
ZDB-PUB-070907-3	17719025	Pei, W., Noushmehr, H., Costa, J., Ouspenskaia, M.V., Elkahloun, A.G., and Feldman, B.	An early requirement for maternal FoxH1 during zebrafish gastrulation	Developmental Biology	2007	310(1)	10-22
ZDB-PUB-070912-10	17826762	Warga, R.M., and Kane, D.A.	A role for N-cadherin in mesodermal morphogenesis during gastrulation	Developmental Biology	2007	310(2)	211-225
ZDB-PUB-070920-8	17850782	Fan, X., Hagos, E.G., Xu, B., Sias, C., Kawakami, K., Burdine, R.D., and Dougan, S.T.	Nodal signals mediate interactions between the extra-embryonic and embryonic tissues in zebrafish	Developmental Biology	2007	310(2)	363-378
ZDB-PUB-071009-8	17912356	Azuma, M., Embree, L.J., Sabaawy, H., and Hickstein, D.D.	Ewing sarcoma protein ewsr1 maintains mitotic integrity and proneural cell survival in the zebrafish embryo	PLoS One	2007	2(10)	e979
ZDB-PUB-071023-20	17945029	Li, Z., Korzh, V., and Gong, Z.	Localized rbp4 expression in the yolk syncytial layer plays a role in yolk cell extension and early liver development	BMC Developmental Biology	2007	7(1)	117
ZDB-PUB-071023-5	17937393	Ott, E.B., Sakalis, P.A., Marques, I.J., and Bagowski, C.P.	Characterization of the enigma family in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2007	236(11)	3144-3154
ZDB-PUB-071029-2	17950269	Holtzinger, A., and Evans, T.	Gata5 and Gata6 are functionally redundant in zebrafish for specification of cardiomyocytes	Developmental Biology	2007	312(2)	613-622
ZDB-PUB-071108-6	17965052	Blanco, M.J., Barrallo-Gimeno, A., Acloque, H., Reyes, A.E., Tada, M., Allende, M.L., Mayor, R., and Nieto, M.A.	Snail1a and Snail1b cooperate in the anterior migration of the axial mesendoderm in the zebrafish embryo	Development (Cambridge, England)	2007	134(22)	4073-4081
ZDB-PUB-071118-22	17980025	Londin, E.R., Mentzer, L., and Sirotkin, H.I.	Churchill regulates cell movement and mesoderm specification by repressing Nodal signaling	BMC Developmental Biology	2007	7(1)	120
ZDB-PUB-071118-48	17998248	Gongal, P.A., and Waskiewicz, A.J.	Zebrafish model of Holoprosencephaly demonstrates a key role for TGIF in regulating retinoic acid metabolism	Human molecular genetics	2008	17(4)	525-538
ZDB-PUB-071125-22	18025082	Jia, S., Ren, Z., Li, X., Zheng, Y., and Meng, A.	smad2 and smad3 Are Required for Mesendoderm Induction by Transforming Growth Factor-β/Nodal Signals in Zebrafish	The Journal of biological chemistry	2008	283(4)	2418-2426
ZDB-PUB-071129-9	18039968	Esguerra, C.V., Nelles, L., Vermeire, L., Ibrahimi, A., Crawford, A.D., Derua, R., Janssens, E., Waelkens, E., Carmeliet, P., Collen, D., and Huylebroeck, D.	Ttrap is an essential modulator of Smad3-dependent Nodal signaling during zebrafish gastrulation and left-right axis determination	Development (Cambridge, England)	2007	134(24)	4381-4393
ZDB-PUB-071210-28	18056260	Ochi, H., Hans, S., and Westerfield, M.	Smarcd3 regulates the timing of zebrafish myogenesis onset	The Journal of biological chemistry	2008	283(6)	3529-3536
ZDB-PUB-071210-3	18045497	Harrington, M.J., Hong, E., Fasanmi, O., and Brewster, R.	Cadherin-mediated adhesion regulates posterior body formation	BMC Developmental Biology	2007	7(1)	130
ZDB-PUB-071210-7	18045845	Schneider, I., Houston, D.W., Rebagliati, M.R., and Slusarski, D.C.	Calcium fluxes in dorsal forerunner cells antagonize {beta}-catenin and alter left-right patterning	Development (Cambridge, England)	2008	135(1)	75-84
ZDB-PUB-071210-9	18046332	Hart, D.O., Raha, T., Lawson, N.D., and Green, M.R.	Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3	Nature	2007	450(7172)	1082-1085
ZDB-PUB-080102-1	18159945	Jopling, C., van Geemen, D., and den Hertog, J.	Shp2 Knockdown and Noonan/LEOPARD Mutant Shp2-Induced Gastrulation Defects	PLoS Genetics	2007	3(12)	e225
ZDB-PUB-080218-19	18214611	Su, J., Zhu, Z., Wang, Y., Xiong, F., and Zou, J.	The Cytomegalovirus Promoter-Driven Short Hairpin RNA Constructs Mediate Effective RNA Interference in Zebrafish In Vivo	Marine biotechnology (New York, N.Y.)	2008	10(3)	262-269
ZDB-PUB-080226-5	18234726	Cheng, P.Y., Lin, C.C., Wu, C.S., Lu, Y.F., Lin, C.Y., Chung, C.C., Chu, C.Y, Huang, C.J., Tsai, C.Y., Korzh, S., Wu, J.L., and Hwang, S.P.	Zebrafish cdx1b regulates expression of downstream factors of Nodal signaling during early endoderm formation	Development (Cambridge, England)	2008	135(5)	941-952
ZDB-PUB-080226-7	18222420	Monteiro, R., van Dinther, M., Bakkers, J., Wilkinson, R., Patient, R., Ten Dijke, P., and Mummery, C.	Two novel type II receptors mediate BMP signalling and are required to establish left-right asymmetry in zebrafish	Developmental Biology	2008	315(1)	55-71
ZDB-PUB-080227-15	18261720	Moreno, T.A., Jappelli, R., Izpisúa Belmonte, J.C., and Kintner, C.	Retinoic acid regulation of the Mesp-Ripply feedback loop during vertebrate segmental patterning	Developmental Biology	2008	315(2)	317-330
ZDB-PUB-080309-1	14660439	Marlow, F., Gonzalez, E.M., Yin, C., Rojo, C., and Solnica-Krezel, L.	No tail co-operates with non-canonical Wnt signaling to regulate posterior body morphogenesis in zebrafish	Development (Cambridge, England)	2004	131(1)	203-216
ZDB-PUB-080311-7	18322750	Su, J., Zhu, Z., Xiong, F., and Wang, Y.	Hybrid Cytomegalovirus-U6 Promoter-based Plasmid Vectors Improve Efficiency of RNA Interference in Zebrafish	Marine biotechnology (New York, N.Y.)	2008	10(5)	511-517
ZDB-PUB-080311-8	18326814	Nicoli, S., Tobia, C., Gualandi, L., De Sena, G., and Presta, M.	Calcitonin receptor-like receptor guides arterial differentiation in Zebrafish	Blood	2008	111(10)	4965-4972
ZDB-PUB-080326-11	18338789	Knight, R.D., Mebus, K., and Roehl, H.H.	Mandibular arch muscle identity is regulated by a conserved molecular process during vertebrate development	Journal of experimental zoology. Part B, Molecular and developmental evolution	2008	310(4)	355-369
ZDB-PUB-080326-2	18332117	Kawamura, A., Koshida, S., and Takada, S.	Activator-to-repressor conversion of T-box transcription factors by the Ripply family of Groucho/TLE-associated mediators	Molecular and cellular biology	2008	28(10)	3236-3244
ZDB-PUB-080326-27	18347071	Gan, X.Q., Wang, J.Y., Xi, Y., Wu, Z.L., Li, Y.P., and Li, L.	Nuclear Dvl, c-Jun, beta-catenin, and TCF form a complex leading to stabilization of beta-catenin-TCF interaction	The Journal of cell biology	2008	180(6)	1087-1100
ZDB-PUB-080327-14	18359204	Kreiling, J.A., Balantac, Z.L., Crawford, A.R., Ren, Y., Toure, J., Zchut, S., Kochilas, L., and Creton, R.	Suppression of the endoplasmic reticulum calcium pump during zebrafish gastrulation affects left-right asymmetry of the heart and brain	Mechanisms of Development	2008	125(5-6)	396-410
ZDB-PUB-080327-18	18361682	Rojo, C., and González, E.	Apoptosis in Zebrafish Embryos: Removing Cells from Inappropriate Locations	Zebrafish	2008	5(1)	25-37
ZDB-PUB-080331-2	18364700	Krieg, M., Arboleda-Estudillo, Y., Puech, P.H., Käfer, J., Graner, F., Müller, D.J., and Heisenberg, C.P.	Tensile forces govern germ-layer organization in zebrafish	Nature cell biology	2008	10(4)	429-436
ZDB-PUB-080415-3	18398471	Sachidanandan, C., Yeh, J.R., Peterson, Q.P., and Peterson, R.T.	Identification of a novel retinoid by small molecule screening with zebrafish embryos	PLoS One	2008	3(4)	e1947
ZDB-PUB-080422-11	18423448	Coyle, R.C., Latimer, A., and Jessen, J.R.	Membrane-type 1 matrix metalloproteinase regulates cell migration during zebrafish gastrulation: Evidence for an interaction with non-canonical Wnt signaling	Experimental cell research	2008	314(10)	2150-2162
ZDB-PUB-080422-8	18419805	Hawkins, T.A., Cavodeassi, F., Erdelyi, F., Szabo, G., and Lele, Z.	The small molecule Mek1/2 inhibitor U0126 disrupts the chordamesoderm to notochord transition in zebrafish	BMC Developmental Biology	2008	8(1)	42
ZDB-PUB-080501-11	18446220	Hong, S.K., Tsang, M., and Dawid, I.B.	The Mych Gene Is Required for Neural Crest Survival during Zebrafish Development	PLoS One	2008	3(4)	e2029
ZDB-PUB-080501-2	18442396	Krens, S.F., Corredor-Adamez, M., He, S., Snaar-Jagalska, B.E., and Spaink, H.P.	ERK1 and ERK2 MAPK are key regulators of distinct gene sets in zebrafish embryogenesis	BMC Genomics	2008	9	196
ZDB-PUB-080506-13	18455989	Schenck, A., Goto-Silva, L., Collinet, C., Rhinn, M., Giner, A., Habermann, B., Brand, M., and Zerial, M.	The endosomal protein Appl1 mediates Akt substrate specificity and cell survival in vertebrate development	Cell	2008	133(3)	486-497
ZDB-PUB-080515-2	18468594	Aamar, E., and Dawid, I.B.	Protocadherin-18a has a role in cell adhesion, behavior and migration in zebrafish development	Developmental Biology	2008	318(2)	335-346
ZDB-PUB-080527-24	18500334	Doyon, Y., McCammon, J.M., Miller, J.C., Faraji, F., Ngo, C., Katibah, G.E., Amora, R., Hocking, T.D., Zhang, L., Rebar, E.J., Gregory, P.D., Urnov, F.D., and Amacher, S.L.	Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases	Nat. Biotechnol.	2008	26(6)	702-708
ZDB-PUB-080610-3	18514184	Krens, S.F., He, S., Lamers, G.E., Meijer, A.H., Bakkers, J., Schmidt, T., Spaink, H.P., and Snaar-Jagalska, B.E.	Distinct functions for ERK1 and ERK2 in cell migration processes during zebrafish gastrulation	Developmental Biology	2008	319(2)	370-383
ZDB-PUB-080616-12	18538138	Yao, S., Xie, L., Qian, M., Yang, H., Zhou, L., Zhou, Q., Yan, F., Gou, L., Wei, Y., Zhao, X., and Mo, X.	Pnas4 is a novel regulator for convergence and extension during vertebrate gastrulation	FEBS letters	2008	582(15)	2325-2332
ZDB-PUB-080616-15	18539122	Kishimoto, N., Cao, Y., Park, A., and Sun, Z.	Cystic kidney gene seahorse regulates cilia-mediated processes and Wnt pathways	Developmental Cell	2008	14(6)	954-961
ZDB-PUB-080630-12	18579679	Mizoguchi, T., Verkade, H., Heath, J.K., Kuroiwa, A., and Kikuchi, Y.	Sdf1/Cxcr4 signaling controls the dorsal migration of endodermal cells during zebrafish gastrulation	Development (Cambridge, England)	2008	135(15)	2521-2529
ZDB-PUB-080630-13	18579681	Tian, J., Andrée, B., Jones, C.M., and Sampath, K.	The pro-domain of the zebrafish Nodal-related protein Cyclops regulates its signaling activities	Development (Cambridge, England)	2008	135(15)	2649-2658
ZDB-PUB-080630-16	18582857	Vervenne, H.B., Crombez, K.R., Lambaerts, K., Carvalho, L., Koeppen, M., Heisenberg, C.P., Van de Ven, W.J., and Petit, M.M.	Lpp is involved in Wnt/PCP signaling and acts together with Scrib to mediate convergence and extension movements during zebrafish gastrulation	Developmental Biology	2008	320(1)	267-277
ZDB-PUB-080630-4	18572157	Dee, C.T., Hirst, C.S., Shih, Y.H., Tripathi, V.B., Patient, R.K., and Scotting, P.J.	Sox3 regulates both neural fate and differentiation in the zebrafish ectoderm	Developmental Biology	2008	320(1)	289-301
ZDB-PUB-080714-9	18606146	Martin, B.L., and Kimelman, D.	Regulation of canonical Wnt signaling by Brachyury is essential for posterior mesoderm formation	Developmental Cell	2008	15(1)	121-133
ZDB-PUB-080826-15	18701549	Kai, M., Heisenberg, C.P., and Tada, M.	Sphingosine-1-phosphate receptors regulate individual cell behaviours underlying the directed migration of prechordal plate progenitor cells during zebrafish gastrulation	Development (Cambridge, England)	2008	135(18)	3043-3051
ZDB-PUB-080826-45	18719251	Nair, S., and Schilling, T.F.	Chemokine Signaling Controls Endodermal Migration During Zebrafish Gastrulation	Science (New York, N.Y.)	2008	322(5898)	89-92
ZDB-PUB-080902-26	18755178	Leung, T., Humbert, J.E., Stauffer, A.M., Giger, K.E., Chen, H., Tsai, H.J., Wang, C., Mirshahi, T., and Robishaw, J.D.	The orphan G protein-coupled receptor 161 is required for left-right patterning	Developmental Biology	2008	323(1)	31-40
ZDB-PUB-080908-2	18762581	Ding, Y., Xi, Y., Chen, T., Wang, J.Y., Tao, D.L., Wu, Z.L., Li, Y.P., Li, C., Zeng, R., and Li, L.	Caprin-2 enhances canonical Wnt signaling through regulating LRP5/6 phosphorylation	The Journal of cell biology	2008	182(5)	865-872
ZDB-PUB-080915-23	18787069	Mudumana, S.P., Hentschel, D., Liu, Y., Vasilyev, A., and Drummond, I.A.	odd skipped related1 reveals a novel role for endoderm in regulating kidney versus vascular cell fate	Development (Cambridge, England)	2008	135(20)	3355-3367
ZDB-PUB-081013-1	19404452	Schötz, E.M., Burdine, R.D., Jülicher, F., Steinberg, M.S., Heisenberg, C.P., and Foty, R.A.	Quantitative differences in tissue surface tension influence zebrafish germ layer positioning	HFSP Journal	2008	2(1)	42-56
ZDB-PUB-081028-11	18941507	Lai, S.L., Chan, T.H., Lin, M.J., Huang, W.P., Lou, S.W., and Lee, S.J.	Diaphanous-related formin 2 and profilin I are required for gastrulation cell movements	PLoS One	2008	3(10)	e3439
ZDB-PUB-081029-11	18948415	Esterberg, R., Delalande, J.M., and Fritz, A.	Tailbud-derived Bmp4 drives proliferation and inhibits maturation of zebrafish chordamesoderm	Development (Cambridge, England)	2008	135(23)	3891-3901
ZDB-PUB-081031-7	18971206	Ferrante, M.I., Romio, L., Castro, S., Collins, J.E., Goulding, D.A., Stemple, D.L., Woolf, A.S., and Wilson, S.W.	Convergent Extension Movements and Ciliary Function are Mediated by ofd1, A Zebrafish Orthologue of the Human Oral-Facial-Digital Type 1 Syndrome Gene	Human molecular genetics	2009	18(2)	289-303
ZDB-PUB-081121-16	19013452	Sabel, J.L., d'Alençon, C., O'Brien, E.K., Otterloo, E.V., Lutz, K., Cuykendall, T.N., Schutte, B.C., Houston, D.W., and Cornell, R.A.	Maternal Interferon Regulatory Factor 6 is required for the differentiation of primary superficial epithelia in Danio and Xenopus embryos	Developmental Biology	2009	325(1)	249-262
ZDB-PUB-081121-21	19015027	Ota, S., Tonou-Fujimori, N., and Yamasu, K.	The roles of the FGF signal in zebrafish embryos analyzed using constitutive activation and dominant-negative suppression of different FGF receptors	Mechanisms of Development	2009	126(1-2)	1-17
ZDB-PUB-081203-33	19046963	Pei, W., and Feldman, B.	Identification of common and unique modifiers of zebrafish midline bifurcation and cyclopia	Developmental Biology	2009	326(1)	201-211
ZDB-PUB-081218-24	19081079	Waxman, J.S., Keegan, B.R., Roberts, R.W., Poss, K.D., and Yelon, D.	Hoxb5b acts downstream of retinoic Acid signaling in the forelimb field to restrict heart field potential in zebrafish	Developmental Cell	2008	15(6)	923-934
ZDB-PUB-090105-1	19091770	Carreira-Barbosa, F., Kajita, M., Morel, V., Wada, H., Okamoto, H., Martinez Arias, A., Fujita, Y., Wilson, S.W., and Tada, M.	Flamingo regulates epiboly and convergence/extension movements through cell cohesive and signalling functions during zebrafish gastrulation	Development (Cambridge, England)	2009	136(3)	383-392
ZDB-PUB-090106-17	19103803	Lin, X., and Xu, X.	Distinct functions of Wnt/{beta}-catenin signaling in KV development and cardiac asymmetry	Development (Cambridge, England)	2009	136(2)	207-217
ZDB-PUB-090106-43	19123126	Parkin, C.A., Allen, C.E., and Ingham, P.W.	Hedgehog signalling is required for cloacal development in the zebrafish embryo	The International journal of developmental biology	2009	53(1)	45-57
ZDB-PUB-090123-16	19158186	Garnett, A.T., Han, T.M., Gilchrist, M.J., Smith, J.C., Eisen, M.B., Wardle, F.C., and Amacher, S.L.	Identification of direct T-box target genes in the developing zebrafish mesoderm	Development (Cambridge, England)	2009	136(5)	749-760
ZDB-PUB-090123-4	19146810	Regan, J.C., Concha, M.L., Roussigne, M., Russell, C., and Wilson, S.W.	An Fgf8-dependent bistable cell migratory event establishes CNS asymmetry	Neuron	2009	61(1)	27-34
ZDB-PUB-090204-19	19169355	Meani, N., Pezzimenti, F., Deflorian, G., Mione, M., and Alcalay, M.	The tumor suppressor PRDM5 regulates Wnt signaling at early stages of zebrafish development	PLoS One	2009	4(1)	e4273
ZDB-PUB-090204-7	19164561	Hong, S.K., and Dawid, I.B.	FGF-dependent left-right asymmetry patterning in zebrafish is mediated by Ier2 and Fibp1	Proceedings of the National Academy of Sciences of the United States of America	2009	106(7)	2230-2235
ZDB-PUB-090217-39	19216761	Ochi, H., and Westerfield, M.	Lbx2 regulates formation of myofibrils	BMC Developmental Biology	2009	9	13
ZDB-PUB-090227-12	19225104	Morley, R.H., Lachani, K., Keefe, D., Gilchrist, M.J., Flicek, P., Smith, J.C., and Wardle, F.C.	A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation	Proceedings of the National Academy of Sciences of the United States of America	2009	106(10)	3829-3834
ZDB-PUB-090227-7	19222870	Sanhueza, D., Montoya, A., Sierralta, J., and Kukuljan, M.	Expression of voltage-activated calcium channels in the early zebrafish embryo	Zygote (Cambridge, England)	2009	17(2)	131-135
ZDB-PUB-090302-14	19235835	Loucks, E.J., and Ahlgren, S.C.	Deciphering the role of Shh signaling in axial defects produced by ethanol exposure	Birth defects research. Part A, Clinical and molecular teratology	2009	85(6)	556-567
ZDB-PUB-090302-17	19236859	Row, R., and Kimelman, D.	Bmp inhibition is necessary for post-gastrulation patterning and morphogenesis of the zebrafish tailbud	Developmental Biology	2009	329(1)	55-63
ZDB-PUB-090302-25	19242413	Neugebauer, J.M., Amack, J.D., Peterson, A.G., Bisgrove, B.W., and Yost, H.J.	FGF signalling during embryo development regulates cilia length in diverse epithelia	Nature	2009	458(7238)	651-654
ZDB-PUB-090319-2	19282986	Holloway, B.A., Gomez de la Torre Canny, S., Ye, Y., Slusarski, D.C., Freisinger, C.M., Dosch, R., Chou, M.M., Wagner, D.S., and Mullins, M.C.	A novel role for MAPKAPK2 in morphogenesis during zebrafish development	PLoS Genetics	2009	5(3)	e1000413
ZDB-PUB-090330-4	19307597	Liu, X., Huang, S., Ma, J., Li, C., Zhang, Y., and Luo, L.	NF-kappaB and Snail1a coordinate the cell cycle with gastrulation	The Journal of cell biology	2009	184(6)	805-815
ZDB-PUB-090330-5	19307601	Lin, F., Chen, S., Sepich, D.S., Panizzi, J.R., Clendenon, S.G., Marrs, J.A., Hamm, H.E., and Solnica-Krezel, L.	Galpha12/13 regulate epiboly by inhibiting E-cadherin activity and modulating the actin cytoskeleton	The Journal of cell biology	2009	184(6)	909-921
ZDB-PUB-090413-4	19351181	Ghosh, B., Benyumov, A.O., Ghosh, P., Jia, Y., Avdulov, S., Dahlberg, P.S., Peterson, M., Smith, K., Polunovsky, V.A., Bitterman, P.B., and Wagner, C.R.	Non-Toxic Chemical Interdiction of the Epithelial-to-Mesenchymal Transition by Targeting Cap-dependent Translation	ACS Chemical Biology	2009	4(5)	367-377
ZDB-PUB-090417-1	19363156	Roussigné, M., Bianco, I.H., Wilson, S.W., and Blader, P.	Nodal signalling imposes left-right asymmetry upon neurogenesis in the habenular nuclei	Development (Cambridge, England)	2009	136(9)	1549-1557
ZDB-PUB-090417-12	19369398	Dixon Fox, M., and Bruce, A.E.	Short- and long-range functions of Goosecoid in zebrafish axis formation are independent of Chordin, Noggin 1 and Follistatin-like 1b	Development (Cambridge, England)	2009	136(10)	1675-1685
ZDB-PUB-090424-17	19380582	Liu, J.X., Hu, B., Wang, Y., Gui, J.F., and Xiao, W.	Zebrafish eaf1 and eaf2/u19 mediate effective convergence and extension movements through the maintenance of wnt11 and wnt5 expression	The Journal of biological chemistry	2009	284(24)	16679-16692
ZDB-PUB-090424-24	19383152	Webster, D.M., Teo, C.F., Sun, Y., Wloga, D., Gay, S., Klonowski, K.D., Wells, L., and Dougan, S.T.	O-GlcNAc modifications regulate cell survival and epiboly during zebrafish development	BMC Developmental Biology	2009	9	28
ZDB-PUB-090511-11	19419239	Harvey, S.A., and Smith, J.C.	Visualisation and Quantification of Morphogen Gradient Formation in the Zebrafish	PLoS Biology	2009	7(5)	e1000101
ZDB-PUB-090511-27	19425111	Tiso, N., Filippi, A., Benato, F., Negrisolo, E., Modena, N., Vaccari, E., Driever, W., and Argenton, F.	Differential expression and regulation of olig genes in zebrafish	The Journal of comparative neurology	2009	515(3)	378-396
ZDB-PUB-090518-24	19443571	White, Y.A., Kyle, J.T., and Wood, A.W.	Targeted Gene Knockdown in Zebrafish Reveals Distinct Intraembryonic Functions for Insulin-Like Growth Factor II Signaling	Endocrinology	2009	150(9)	4366-4375
ZDB-PUB-090616-47	19509062	Zhang, Y., Li, X., Qi, J., Wang, J., Liu, X., Zhang, H., Lin, S.C., and Meng, A.	Rock2 controls TGFβ signaling and inhibits mesoderm induction in zebrafish embryos	Journal of Cell Science	2009	122(Pt 13)	2197-2207
ZDB-PUB-090714-2	19576198	Olesnicky Killian, E.C., Birkholz, D.A., and Artinger, K.B.	A role for chemokine signaling in neural crest cell migration and craniofacial development	Developmental Biology	2009	333(1)	161-172
ZDB-PUB-090714-6	19578332	Molina, G., Vogt, A., Bakan, A., Dai, W., de Oliveira, P.Q., Znosko, W., Smithgall, T.E., Bahar, I., Lazo, J.S., Day, B.W., and Tsang, M.	Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineages	Nature Chemical Biology	2009	5(9)	680-687
ZDB-PUB-090720-1	19605500	Tao, S., Cai, Y., and Sampath, K.	The Integrator subunits function in hematopoiesis by modulating Smad/BMP signaling	Development (Cambridge, England)	2009	136(16)	2757-2765
ZDB-PUB-090807-4	19644983	Tomasini, A.J., Schuler, A.D., Zebala, J.A., and Mayer, A.N.	Photomorphs: A novel light-activated reagent for controlling gene expression in zebrafish	Genesis (New York, N.Y. : 2000)	2009	47(11)	736-743
ZDB-PUB-090828-28	19708646	Ouyang, X., Shestopalov, I.A., Sinha, S., Zheng, G., Pitt, C.L., Li, W.H., Olson, A.J., and Chen, J.K.	Versatile Synthesis and Rational Design of Caged Morpholinos	Journal of the American Chemical Society	2009	131(37)	13255-13269
ZDB-PUB-090921-24	19759899	Zou, S., Kamei, H., Modi, Z., and Duan, C.	Zebrafish IGF genes: gene duplication, conservation and divergence, and novel roles in midline and notochord development	PLoS One	2009	4(9)	e7026
ZDB-PUB-091005-11	19797250	Henshall, T.L., Tucker, B., Lumsden, A.L., Nornes, S., Lardelli, M.T., and Richards, R.I.	Selective neuronal requirement for Huntingtin in the developing zebrafish	Human molecular genetics	2009	18(24)	4830-4842
ZDB-PUB-091005-5	19789708	Liu, S., Li, Z., and Gui, J.F.	Fish-specific duplicated dmrt2b contributes to a divergent function through Hedgehog pathway and maintains left-right asymmetry establishment function	PLoS One	2009	4(9)	e7261
ZDB-PUB-091023-4	19797767	Siekmann, A.F., Standley, C., Fogarty, K.E., Wolfe, S.A., and Lawson, N.D.	Chemokine signaling guides regional patterning of the first embryonic artery	Genes & Development	2009	23(19)	2272-2277
ZDB-PUB-091023-62	19842174	Chen, C.H., Sun, Y.H., Pei, D.S., and Zhu, Z.Y.	Comparative expression of zebrafish lats1 and lats2 and their implication in gastrulation movements	Developmental Dynamics : an official publication of the American Association of Anatomists	2009	238(11)	2850-2859
ZDB-PUB-091023-7	19799895	Hatler, J.M., Essner, J.J., and Johnson, R.G.	A gap junction connexin is required in the vertebrate left-right organizer	Developmental Biology	2009	336(2)	183-191
ZDB-PUB-091215-55	19997509	Edeling, M.A., Sanker, S., Shima, T., Umasankar, P.K., Höning, S., Kim, H.Y., Davidson, L.A., Watkins, S.C., Tsang, M., Owen, D.J., and Traub, L.M.	Structural requirements for PACSIN/Syndapin operation during zebrafish embryonic notochord development	PLoS One	2009	4(12)	e8150
ZDB-PUB-091221-22	20014098	Siddiqui, M., Sheikh, H., Tran, C., and Bruce, A.E.	The tight junction component Claudin E is required for zebrafish epiboly	Developmental Dynamics : an official publication of the American Association of Anatomists	2010	239(2)	715-722
ZDB-PUB-100105-40	20044811	Rikin, A., and Evans, T.	The tbx/bHLH transcription factor mga regulates gata4 and organogenesis	Developmental Dynamics : an official publication of the American Association of Anatomists	2010	239(2)	535-547
ZDB-PUB-100119-14	20077475	Harrington, M.J., Chalasani, K., and Brewster, R.	Cellular mechanisms of posterior neural tube morphogenesis in the zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2010	239(3)	747-762
ZDB-PUB-100302-20	20188722	van Eekelen, M., Runtuwene, V., Overvoorde, J., and den Hertog, J.	RPTPalpha and PTPepsilon Signaling via Fyn/Yes and RhoA is Essential for Zebrafish Convergence and Extension Cell Movements during Gastrulation	Developmental Biology	2010	340(2)	626-639
ZDB-PUB-100317-13	20215349	Harvey, S.A., Tümpel, S., Dubrulle, J., Schier, A.F., and Smith, J.C.	no tail integrates two modes of mesoderm induction	Development (Cambridge, England)	2010	137(7)	1127-1135
ZDB-PUB-100330-14	20332150	Speirs, C.K., Jernigan, K.K., Kim, S.H., Cha, Y.I., Lin, F., Sepich, D.S., DuBois, R.N., Lee, E., and Solnica-Krezel, L.	Prostaglandin Gbetagamma signaling stimulates gastrulation movements by limiting cell adhesion through Snai1a stabilization	Development (Cambridge, England)	2010	137(8)	1327-1337
ZDB-PUB-100330-38	20346935	Chang, L.L., and Kessler, D.S.	Foxd3 is an Essential Nodal-Dependent Regulator of Zebrafish Dorsal Mesoderm Development	Developmental Biology	2010	342(1)	39-50
ZDB-PUB-100408-28	20368991	Das, B.C., McCartin, K., Liu, T.C., Peterson, R.T., and Evans, T.	A forward chemical screen in zebrafish identifies a retinoic acid derivative with receptor specificity	PLoS One	2010	5(4)	e10004
ZDB-PUB-100420-34	20392739	Ishimatsu, K., Takamatsu, A., and Takeda, H.	Emergence of traveling waves in the zebrafish segmentation clock	Development (Cambridge, England)	2010	137(10)	1595-1599
ZDB-PUB-100420-37	20394815	Zhang, Y., Shao, M., Wang, L., Liu, Z., Gao, M., Liu, C., and Zhang, H.	Ethanol exposure affects cell movement during gastrulation and induces split axes in zebrafish embryos	International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience	2010	28(4)	283-288
ZDB-PUB-100420-8	20378823	de Groh, E.D., Swanhart, L.M., Cosentino, C.C., Jackson, R.L., Dai, W., Kitchens, C.A., Day, B.W., Smithgall, T.E., and Hukriede, N.A.	Inhibition of Histone Deacetylase Expands the Renal Progenitor Cell Population	Journal of the American Society of Nephrology : JASN	2010	21(5)	794-802
ZDB-PUB-100427-4	20405038	Tay, H.G., Ng, Y.W., and Manser, E.	A vertebrate-specific Chp-PAK-PIX pathway maintains E-cadherin at adherens junctions during zebrafish epiboly	PLoS One	2010	5(4)	e10125
ZDB-PUB-100518-10	20463883	Okuda, Y., Ogura, E., Kondoh, H., and Kamachi, Y.	B1 SOX coordinate cell specification with patterning and morphogenesis in the early zebrafish embryo	PLoS Genetics	2010	6	e1000936
ZDB-PUB-100621-28	20552995	Wang, Y., Seebald, J.L., Szeto, D.P., and Irudayaraj, J.	Biocompatibility and Biodistribution of Surface-Enhanced Raman Scattering Nanoprobes in Zebrafish Embryos: In vivo and Multiplex Imaging	ACS nano	2010	4(7)	4039-4053
ZDB-PUB-100625-27	20573700	Yamamoto, M., Morita, R., Mizoguchi, T., Matsuo, H., Isoda, M., Ishitani, T., Chitnis, A.B., Matsumoto, K., Crump, J.G., Hozumi, K., Yonemura, S., Kawakami, K., and Itoh, M.	Mib-Jag1-Notch signalling regulates patterning and structural roles of the notochord by controlling cell-fate decisions	Development (Cambridge, England)	2010	137(15)	2527-2537
ZDB-PUB-100625-9	20564202	Seo, J., Asaoka, Y., Nagai, Y., Hirayama, J., Yamasaki, T., Namae, M., Ohata, S., Shimizu, N., Negishi, T., Kitagawa, D., Kondoh, H., Furutani-Seiki, M., Penninger, J.M., Katada, T., and Nishina, H.	Negative regulation of wnt11 expression by Jnk signaling during zebrafish gastrulation	Journal of cellular biochemistry	2010	110(4)	1022-1037
ZDB-PUB-100719-49	20625580	Zhong, H., Xin, S., Zhao, Y., Lu, J., Li, S., Gong, J., Yang, Z., and Lin, S.	Genetic approach to evaluate specificity of small molecule drug candidates inhibiting PLK1 using zebrafish	Molecular Biosystems	2010	6(8)	1463-1468
ZDB-PUB-100719-59	20630945	Francescatto, L., Rothschild, S.C., Myers, A.L., and Tombes, R.M.	The activation of membrane targeted CaMK-II in the zebrafish Kupffer's vesicle is required for left-right asymmetry	Development (Cambridge, England)	2010	137(16)	2753-2762
ZDB-PUB-100719-8	20599944	Wells, S., Conran, J.G., Tamme, R., Gaudin, A., Webb, J., and Lardelli, M.	Cryptic organisation within an apparently irregular rostrocaudal distribution of interneurons in the embryonic zebrafish spinal cord	Experimental cell research	2010	316(19)	3292-3303
ZDB-PUB-100811-10	20692251	Fukazawa, C., Santiago, C., Park, K.M., Deery, W.J., Canny, S.G., Holterhoff, C.K., and Wagner, D.S.	poky/chuk/ikk1 is required for differentiation of the zebrafish embryonic epidermis	Developmental Biology	2010	346(2)	272-283
ZDB-PUB-100910-28	20814180	Zhao, J., Sun, H., Deng, W., Li, D., Liu, Y., Lu, Y., Liu, Y., Tao, D., Zhang, S., and Ma, Y.	Piwi-Like 2 Mediates Fibroblast Growth Factor Signaling during Gastrulation of Zebrafish Embryo	The Tohoku journal of experimental medicine	2010	222(1)	63-68
ZDB-PUB-100910-29	20814748	Ahn, H.J., Park, Y., Kim, S., Park, H.C., Seo, S.K., Yeo, S.Y., and Geum, D.	The expression profile and function of Satb2 in zebrafish embryonic development	Molecules and cells	2010	30(4)	377-382
ZDB-PUB-100929-2	20843856	Ablooglu, A.J., Tkachenko, E., Kang, J., and Shattil, S.J.	Integrin alphaV is necessary for gastrulation movements that regulate vertebrate body asymmetry	Development (Cambridge, England)	2010	137(20)	3449-3458
ZDB-PUB-101011-17	20876649	Lopes, S.S., Lourenço, R., Pacheco, L., Moreno, N., Kreiling, J., and Saude, L.	Notch signalling regulates left-right asymmetry through ciliary length control	Development (Cambridge, England)	2010	137(21)	3625-3632
ZDB-PUB-101027-20	20960516	Ota, S., Tonou-Fujimori, N., Nakayama, Y., Ito, Y., Kawamura, A., and Yamasu, K.	FGF receptor gene expression and its regulation by FGF signaling during early zebrafish development	Genesis (New York, N.Y. : 2000)	2010	48(12)	707-716
ZDB-PUB-101027-3	20950598	Seebald, J.L., and Szeto, D.P.	Zebrafish eve1 regulates the lateral and ventral fates of mesodermal progenitor cells at the onset of gastrulation	Developmental Biology	2011	349(1)	78-89
ZDB-PUB-101027-36	20970340	Quesada-Hernández, E., Caneparo, L., Schneider, S., Winkler, S., Liebling, M., Fraser, S.E., and Heisenberg, C.P.	Stereotypical Cell Division Orientation Controls Neural Rod Midline Formation in Zebrafish	Current biology : CB	2010	20(21)	1966-1972
ZDB-PUB-101101-4	20978132	Yao, S., Qian, M., Deng, S., Xie, L., Yang, H., Xiao, C., Zhang, T., Xu, H., Zhao, X., Wei, Y.Q., and Mo, X.	KZP controls canonical WNT8 signaling to modulate dorsoventral patterning during zebrafish gastrulation	The Journal of biological chemistry	2010	285(53)	42086-42096
ZDB-PUB-101108-1	21034731	Yu, J.A., Foley, F.C., Amack, J.D., and Turner, C.E.	The Cell Adhesion-associated Protein Git2 Regulates Morphogenetic Movements during Zebrafish Embryonic Development	Developmental Biology	2011	349(2)	225-237
ZDB-PUB-101108-10	21037591	Choi, H.M., Chang, J.Y., Trinh, L.A., Padilla, J.E., Fraser, S.E., and Pierce, N.A.	Programmable in situ amplification for multiplexed imaging of mRNA expression	Nat. Biotechnol.	2010	28(11)	1208-1212
ZDB-PUB-101222-14	21148433	Zou, J., Li, W.Q., Li, Q., Li, X.Q., Zhang, J.T., Liu, G.Q., Chen, J., Qiu, X.X., Tian, F.J., Wang, Z.Z., Zhu, N., Qin, Y.W., Shen, B., Liu, T.X., and Jing, Q.	Two Functional MicroRNA-126s Repress a Novel Target Gene p21-Activated Kinase 1 to Regulate Vascular Integrity in Zebrafish	Circulation research	2011	108(2)	201-209
ZDB-PUB-101222-36	21159819	Martin, B.L., and Kimelman, D.	Brachyury establishes the embryonic mesodermal progenitor niche	Genes & Development	2010	24(24)	2778-2783
ZDB-PUB-101222-49	21172337	Dal-Pra, S., Thisse, C., and Thisse, B.	FoxA transcription factors are essential for the development of dorsal axial structures	Developmental Biology	2011	350(2)	484-495
ZDB-PUB-110103-18	21268180	Groeneweg, J.W., White, Y.A., Kokel, D., Peterson, R.T., Zukerberg, L.R., Berin, I., Rueda, B.R., and Wood, A.W.	cables1 is required for embryonic neural development: molecular, cellular, and behavioral evidence from the zebrafish	Molecular reproduction and development	2011	78(1)	22-32
ZDB-PUB-110103-5	21177342	Clément, A., Solnica-Krezel, L., and Gould, K.L.	The Cdc14B phosphatase contributes to ciliogenesis in zebrafish	Development (Cambridge, England)	2011	138(2)	291-302
ZDB-PUB-110103-6	21177344	Labalette, C., Bouchoucha, Y.X., Wassef, M.A., Gongal, P.A., Le Men, J., Becker, T., Gilardi-Hebenstreit, P., and Charnay, P.	Hindbrain patterning requires fine-tuning of early krox20 transcription by Sprouty 4	Development (Cambridge, England)	2011	138(2)	317-326
ZDB-PUB-110110-25	21205313	Mirbahai, L., Williams, T.D., Zhan, H., Gong, Z., and Chipman, J.K.	Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis	BMC Genomics	2011	12	3
ZDB-PUB-110119-4	21214862	Tsai, Y.J., Pan, H., Hung, C.M., Hou, P.T., Li, Y.C., Lee, Y.J., Shen, Y.T., Wu, T.T., and Li, C.	The predominant protein arginine methyltransferase PRMT1 is critical for zebrafish convergence and extension during gastrulation	The FEBS journal	2011	278(6)	905-917
ZDB-PUB-110128-11	20133783	Xu, P.F., Zhu, K.Y., Jin, Y., Chen, Y., Sun, X.J., Deng, M., Chen, S.J., Chen, Z., and Liu, T.X.	Setdb2 restricts dorsal organizer territory and regulates left-right asymmetry through suppressing fgf8 activity	Proceedings of the National Academy of Sciences of the United States of America	2010	107(6)	2521-2526
ZDB-PUB-110131-24	21266414	Hong, S.K., Jang, M.K., Brown, J.L., McBride, A.A., and Feldman, B.	Embryonic mesoderm and endoderm induction requires the actions of non-embryonic Nodal-related ligands and Mxtx2	Development (Cambridge, England)	2011	138(4)	787-795
ZDB-PUB-110207-18	21282610	Li, Z., Nie, F., Wang, S., and Li, L.	Histone H4 Lys 20 monomethylation by histone methylase SET8 mediates Wnt target gene activation	Proceedings of the National Academy of Sciences of the United States of America	2011	108(8)	3116-3123
ZDB-PUB-110207-19	21283739	Gibert, Y., Lattanzi, V.J., Zhen, A.W., Vedder, L., Brunet, F., Faasse, S.A., Babitt, J.L., Lin, H.Y., Hammerschmidt, M., and Fraenkel, P.G.	BMP Signaling Modulates Hepcidin Expression in Zebrafish Embryos Independent of Hemojuvelin	PLoS One	2011	6(1)	e14553
ZDB-PUB-110317-44	21384472	Narayanan, A., Thompson, S.A., Lee, J.J., and Lekven, A.C.	A transgenic wnt8a:PAC reporter reveals biphasic regulation of vertebrate mesoderm development	Developmental Dynamics : an official publication of the American Association of Anatomists	2011	240(4)	898-907
ZDB-PUB-110328-1	21396359	Putiri, E., and Pelegri, F.	The zebrafish maternal-effect gene mission impossible encodes the DEAH-box helicase Dhx16 and is essential for the expression of downstream endodermal genes	Developmental Biology	2011	353(2)	275-289
ZDB-PUB-110429-21	21447552	Li, N., Wei, C., Olena, A.F., and Patton, J.G.	Regulation of endoderm formation and left-right asymmetry by miR-92 during early zebrafish development	Development (Cambridge, England)	2011	138(9)	1817-1826
ZDB-PUB-110503-11	21463614	Row, R.H., Maître, J.L., Martin, B.L., Stockinger, P., Heisenberg, C.P., and Kimelman, D.	Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail	Developmental Biology	2011	354(1)	102-110
ZDB-PUB-110511-8	21467072	Hu, S., Wu, Z., Yan, Y., and Li, Y.	Sox31 is involved in central nervous system anteroposterior regionalization through regulating the organizer activity in zebrafish	Acta biochimica et biophysica Sinica	2011	43(5)	387-399
ZDB-PUB-110518-11	21498478	Burcklé, C., Gaudé, H.M., Vesque, C., Silbermann, F., Salomon, R., Jeanpierre, C., Antignac, C., Saunier, S., and Schneider-Maunoury, S.	Control of the Wnt pathways by nephrocystin-4 is required for morphogenesis of the zebrafish pronephros	Human molecular genetics	2011	20(13)	2611-27
ZDB-PUB-110518-46	21523853	Liu, D., Wang, W.D., Melville, D.B., Cha, Y.I., Yin, Z., Issaeva, N., Knapik, E.W., and Yarbrough, W.G.	Tumor suppressor Lzap regulates cell cycle progression, doming, and zebrafish epiboly	Developmental Dynamics : an official publication of the American Association of Anatomists	2011	240(6)	1613-1625
ZDB-PUB-110519-30	21539812	Huang, S., Ma, J., Liu, X., Zhang, Y., and Luo, L.	Geminin is required for left-right patterning through regulating Kupffer's vesicle formation and ciliogenesis in zebrafish	Biochemical and Biophysical Research Communications	2011	410(2)	164-9
ZDB-PUB-110602-6	21575170	Lam, S.H., Lee, S.G., Lin, C.Y., Thomsen, J.S., Fu, P.Y., Murthy, K.R., Li, H., Govindarajan, K.R., Nick, L.C., Bourque, G., Gong, Z., Lufkin, T., Liu, E.T., and Mathavan, S.	Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines	BMC Medical Genomics	2011	4(1)	41
ZDB-PUB-110602-8	21576600	Schwend, T., Loucks, E.J., Snyder, D., and Ahlgren, S.C.	Requirement of Npc1 and availability of cholesterol for early embryonic cell movements in Zebrafish	Journal of Lipid Research	2011	52(7)	1328-44
ZDB-PUB-110603-16	21610036	Yang, Y., and Thorpe, C.	BMP and non-canonical Wnt signaling are required for inhibition of secondary tail formation in zebrafish	Development (Cambridge, England)	2011	138(12)	2601-2611
ZDB-PUB-110609-15	21621531	Belting, H.G., Wendik, B., Lunde, K., Leichsenring, M., Mössner, R., Driever, W., and Onichtchouk, D.	Pou5f1 contributes to dorsoventral patterning by positive regulation of vox and modulation of fgf8a expression	Developmental Biology	2011	356(2)	323-36
ZDB-PUB-110609-33	21627449	Li, D., Sun, H., Deng, W., Tao, D., Liu, Y., and Ma, Y.	Zili Antagonizes Bmp Signaling to Regulate Dorsal-Ventral Patterning during Zebrafish Early Embryogenesis	Zoological science	2011	28(6)	397-402
ZDB-PUB-110609-42	21628557	Matsui, T., Thitamadee, S., Murata, T., Kakinuma, H., Nabetani, T., Hirabayashi, Y., Hirate, Y., Okamoto, H., and Bessho, Y.	Canopy1, a positive feedback regulator of FGF signaling, controls progenitor cell clustering during Kupffer's vesicle organogenesis	Proceedings of the National Academy of Sciences of the United States of America	2011	108(24)	9881-6
ZDB-PUB-110609-58	21637786	Slagle, C.E., Aoki, T., and Burdine, R.D.	Nodal-Dependent Mesendoderm Specification Requires the Combinatorial Activities of FoxH1 and Eomesodermin	PLoS Genetics	2011	7(5)	e1002072
ZDB-PUB-110628-13	21669875	Huang, S., Ma, J., Liu, X., Zhang, Y., and Luo, L.	Retinoic acid signaling sequentially controls visceral and heart laterality in Zebrafish	The Journal of biological chemistry	2011	286(32)	28533-43
ZDB-PUB-110628-14	21669877	Liu, Z., Lin, X., Cai, Z., Zhang, Z., Han, C., Jia, S., Meng, A., and Wang, Q.	Global identification of SMAD2 target genes reveals a role for multiple co-regulatory factors in zebrafish early gastrulas	The Journal of biological chemistry	2011	286(32)	28520-32
ZDB-PUB-110701-10	21715426	Lou, X., Deshwar, A.R., Crump, J.G., and Scott, I.C.	Smarcd3b and Gata5 promote a cardiac progenitor fate in the zebrafish embryo	Development (Cambridge, England)	2011	138(15)	3113-23
ZDB-PUB-110713-14	21726513	Chung, M.I., Ma, A.C., Fung, T.K., and Leung, A.Y.	Characterization of Sry-related HMG box group F genes in zebrafish hematopoiesis	Experimental hematology	2011	39(10)	986-998.e5
ZDB-PUB-110803-40	21803036	Sorrell, M.R., and Waxman, J.S.	Restraint of Fgf8 signaling by retinoic acid signaling is required for proper heart and forelimb formation	Developmental Biology	2011	358(1)	44-55
ZDB-PUB-110901-31	21876750	Gao, W., Xu, L., Guan, R., Liu, X., Han, Y., Wu, Q., Xiao, Y., Qi, F., Zhu, Z., Lin, S., and Zhang, B.	Wdr18 Is Required for Kupffer's Vesicle Formation and Regulation of Body Asymmetry in Zebrafish	PLoS One	2011	6(8)	e23386
ZDB-PUB-110914-18	21901784	Jacobs-McDaniels, N.L., and Albertson, R.C.	Chd7 plays a critical role in controlling left-right symmetry during zebrafish somitogenesis	Developmental Dynamics : an official publication of the American Association of Anatomists	2011	240(10)	2272-80
ZDB-PUB-111011-17	21943404	Finckbeiner, S., Ko, P.J., Carrington, B., Sood, R., Gross, K., Dolnick, B., Sufrin, J., and Liu, P.	Transient Knockdown and Overexpression Reveal a Developmental Role for the Zebrafish enosf1b Gene	Cell & Bioscience	2011	1	32
ZDB-PUB-111013-3	21952048	Zhang, K., Rodriguez-Aznar, E., Yabuta, N., Owen, R.J., Mingot, J.M., Nojima, H., Nieto, M.A., and Longmore, G.D.	Lats2 kinase potentiates Snail1 activity by promoting nuclear retention upon phosphorylation	The EMBO journal	2012	31(1)	29-43
ZDB-PUB-111025-3	21980297	Smith, K.A., Noël, E., Thurlings, I., Rehmann, H., Chocron, S., and Bakkers, J.	Bmp and Nodal Independently Regulate lefty1 Expression to Maintain Unilateral Nodal Activity during Left-Right Axis Specification in Zebrafish	PLoS Genetics	2011	7(9)	e1002289
ZDB-PUB-111111-13	22022484	Domenichini, A., Dadda, M., Facchin, L., Bisazza, A., and Argenton, F.	Isolation and Genetic Characterization of Mother-of-Snow-White, a Maternal Effect Allele Affecting Laterality and Lateralized Behaviors in Zebrafish	PLoS One	2011	6(10)	e25972
ZDB-PUB-111114-19	22039349	Muto, A., Calof, A.L., Lander, A.D., and Schilling, T.F.	Multifactorial Origins of Heart and Gut Defects in nipbl-Deficient Zebrafish, a Model of Cornelia de Lange Syndrome	PLoS Biology	2011	9(10)	e1001181
ZDB-PUB-111115-2	22039507	Goudevenou, K., Martin, P., Yeh, Y.J., Jones, P., and Sablitzky, F.	Def6 Is Required for Convergent Extension Movements during Zebrafish Gastrulation Downstream of Wnt5b Signaling	PLoS One	2011	6(10)	e26548
ZDB-PUB-111117-24	22057270	Li, Y., Li, Q., Long, Y., and Cui, Z.	Lzts2 Regulates Embryonic Cell Movements and Dorsoventral Patterning through Interaction with and Export of Nuclear β-Catenin in Zebrafish	The Journal of biological chemistry	2011	286(52)	45116-30
ZDB-PUB-111207-4	22142964	Du, S., Draper, B.W., Mione, M., Moens, C.B., and Bruce, A.E.	Differential regulation of epiboly initiation and progression by zebrafish Eomesodermin A	Developmental Biology	2012	362(1)	11-23
ZDB-PUB-120106-13	22190637	Schepis, A., Sepich, D., and Nelson, W.J.	αE-catenin regulates cell-cell adhesion and membrane blebbing during zebrafish epiboly	Development (Cambridge, England)	2012	139(3)	537-46
ZDB-PUB-120106-14	22190638	Caron, A., Xu, X., and Lin, X.	Wnt/β-catenin signaling directly regulates Foxj1 expression and ciliogenesis in zebrafish Kupffer’s vesicle	Development (Cambridge, England)	2012	139(3)	514-24
ZDB-PUB-120111-25	22223680	Dworkin, S., Darido, C., Georgy, S.R., Wilanowski, T., Srivastava, S., Ellett, F., Pase, L., Han, Y., Meng, A., Heath, J.K., Lieschke, G.J., and Jane, S.M.	Midbrain-hindbrain boundary patterning and morphogenesis are regulated by diverse grainy head-like 2-dependent pathways	Development (Cambridge, England)	2012	139(3)	525-536
ZDB-PUB-120111-3	22209980	Hu, S.N., Yu, H., Zhang, Y.B., Wu, Z.L., Yan, Y.C., Li, Y.X., Li, Y.Y., and Li, Y.P.	Splice blocking of zygotic sox31 leads to developmental arrest shortly after Mid-Blastula Transition and induces apoptosis in zebrafish	FEBS letters	2012	586(3)	222-228
ZDB-PUB-120125-34	22264734	Martin, B.L., and Kimelman, D.	Canonical Wnt Signaling Dynamically Controls Multiple Stem Cell Fate Decisions during Vertebrate Body Formation	Developmental Cell	2012	22(1)	223-232
ZDB-PUB-120125-37	22265871	Miyake, A., Nihno, S., Murakoshi, Y., Satsuka, A., Nakayama, Y., and Itoh, N.	Neucrin, a novel secreted antagonist of canonical Wnt signaling, plays roles in developing neural tissues in zebrafish	Mechanisms of Development	2012	128(11-12)	577-590
ZDB-PUB-120202-3	22285814	Cast, A.E., Gao, C., Amack, J.D., and Ware, S.M.	An essential and highly conserved role for Zic3 in left-right patterning, gastrulation and convergent extension morphogenesis	Developmental Biology	2012	364(1)	22-31
ZDB-PUB-120202-6	22286130	Shestopalov, I.A., Pitt, C.L., and Chen, J.K.	Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development	Nature Chemical Biology	2012	8(3)	270-276
ZDB-PUB-120216-9	22331904	Takesono, A., Moger, J., Faroq, S., Cartwright, E., Dawid, I.B., Wilson, S.W., and Kudoh, T.	Solute carrier family 3 member 2 (Slc3a2) controls yolk syncytial layer (YSL) formation by regulating microtubule networks in the zebrafish embryo	Proceedings of the National Academy of Sciences of the United States of America	2012	109(9)	3371-3376
ZDB-PUB-120227-12	22357957	Chen, Q., Takada, R., and Takada, S.	Loss of Porcupine impairs convergent extension during gastrulation in zebrafish	Journal of Cell Science	2012	125(9)	2224-2234
ZDB-PUB-120227-9	22357927	Cadwalader, E.L., Condic, M.L., and Yost, H.J.	2-O-sulfotransferase regulates Wnt signaling, cell adhesion and cell cycle during zebrafish epiboly	Development (Cambridge, England)	2012	139(7)	1296-1305
ZDB-PUB-120301-8	22363502	Liang, D., Jia, W., Li, J., Li, K., and Zhao, Q.	Retinoic Acid signaling plays a restrictive role in zebrafish primitive myelopoiesis	PLoS One	2012	7(2)	e30865
ZDB-PUB-120306-19	22387208	Boggetti, B., Jasik, J., Takamiya, M., Strähle, U., Reugels, A.M., and Campos-Ortega, J.A.	NBP, a zebrafish homolog of human Kank3, is a novel Numb interactor essential for epidermal integrity and neurulation	Developmental Biology	2012	365(1)	164-174
ZDB-PUB-120314-11	22399807	Lambaerts, K., Van Dyck, S., Mortier, E., Ivarssonm, Y., Degeest, G., Luyten, A., Vermeiren, E., Peers, B., David, G., and Zimmermann, P.	Syntenin, a syndecan adaptor and an Arf6 phosphatidylinositol 4,5-bisphosphate effector, is essential for epiboly and gastrulation cell movements in zebrafish	Journal of Cell Science	2012	125(5)	1129-1140
ZDB-PUB-120314-20	22406073	Lou, Q., He, J., Hu, L., and Yin, Z.	Role of lbx2 in the noncanonical Wnt signaling pathway for convergence and extension movements and hypaxial myogenesis in zebrafish	Biochimica et biophysica acta. Molecular cell research	2012	1823(5)	1024-1032
ZDB-PUB-120315-3	22411201	English, M.A., Lei, L., Blake, T., Wincovitch, S.M., Sood, R., Azuma, M., Hickstein, D., and Paul Liu, P.	Incomplete splicing, cell division defects, and hematopoietic blockage in <em>dhx8</em> mutant zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2012	241(5)	879-889
ZDB-PUB-120326-13	22427463	Wang, X., Ren, J., Wang, Z., Yao, J., and Fei, J.	NRSF/REST is required for gastrulation and neurogenesis during zebrafish development	Acta biochimica et biophysica Sinica	2012	44(5)	385-393
ZDB-PUB-120409-4	22473868	Narayanan, A., and Lekven, A.C.	Biphasic wnt8a expression is achieved through interactions of multiple regulatory inputs	Developmental Dynamics : an official publication of the American Association of Anatomists	2012	241(6)	1062-1075
ZDB-PUB-120410-1	22480165	Lee, M.S., Bonner, J.R., Bernard, D.J., Sanchez, E.L., Sause, E.T., Prentice, R.R., Burgess, S.M., and Brody, L.C.	Disruption of the folate pathway in zebrafish causes developmental defects	BMC Developmental Biology	2012	12(1)	12
ZDB-PUB-120410-13	22484487	Umasankar, P.K., Sanker, S., Thieman, J.R., Chakraborty, S., Wendland, B., Tsang, M., and Traub, L.M.	Distinct and separable activities of the endocytic clathrin-coat components Fcho1/2 and AP-2 in developmental patterning	Nature cell biology	2012	14(5)	488-501
ZDB-PUB-120412-12	22492359	Tallafuss, A., Gibson, D., Morcos, P., Li, Y., Seredick, S., Eisen, J., and Washbourne, P.	Turning gene function ON and OFF using sense and antisense photo-morpholinos in zebrafish	Development (Cambridge, England)	2012	139(9)	1691-1699
ZDB-PUB-120430-5	22535411	Zhang, M., Zhang, J., Lin, S.C., and Meng, A.	beta-Catenin 1 and beta-catenin 2 play similar and distinct roles in left-right asymmetric development of zebrafish embryos	Development (Cambridge, England)	2012	139(11)	2009-2019
ZDB-PUB-120503-24	22550138	French, V.M., van de Laar, I.M., Wessels, M.W., Rohe, C., Roos-Hesselink, J.W., Wang, G., Frohn-Mulder, I.M., Severijnen, L.A., de Graaf, B.M., Schot, R., Breedveld, G., Mientjes, E., van Tienhoven, M., Jadot, E., Jiang, Z., Verkerk, A., Swagemakers, S., Venselaar, H., Rahimi, Z., Najmabadi, H., Meijers-Heijboer, H., de Graaff, E., Helbing, W.A., Willemsen, R., Devriendt, K., Belmont, J.W., Oostra, B.A., Amack, J.D., and Bertoli-Avella, A.M.	NPHP4 Variants Are Associated With Pleiotropic Heart Malformations	Circulation research	2012	110(12)	1564-1574
ZDB-PUB-120510-3	22560923	Zhang, L., Huang, H., Zhou, F., Schimmel, J., Pardo, C.G., Zhang, T., Barakat, T.S., Sheppard, K.A., Mickanin, C., Porter, J.A., Vertegaal, A.C., van Dam, H., Gribnau, J., Lu, C.X., and Ten Dijke, P.	RNF12 Controls Embryonic Stem Cell Fate and Morphogenesis in Zebrafish Embryos by Targeting Smad7 for Degradation	Molecular Cell	2012	46(5)	650-661
ZDB-PUB-120510-6	22562198	An, M., and Henion, P.D.	The zebrafish sf3b1(b460) mutant reveals differential requirements for the sf3b1 pre-mRNA processing gene during neural crest development	The International journal of developmental biology	2012	56(4)	223-237
ZDB-PUB-120517-11	22589745	Das, A., and Crump, J.G.	Bmps and id2a act upstream of twist1 to restrict ectomesenchyme potential of the cranial neural crest	PLoS Genetics	2012	8(5)	e1002710
ZDB-PUB-120529-27	22615492	Liu, X., Ning, G., Meng, A., and Wang, Q.	MicroRNA-206 regulates cell movements during zebrafish gastrulation by targeting prickle1a and regulating JNK2 phosphorylation	Molecular and cellular biology	2012	32(14)	2934-2942
ZDB-PUB-120630-3	22689470	Yamazoe, S., Shestopalov, I.A., Provost, E., Leach, S.D., and Chen, J.K.	Cyclic Caged Morpholinos: Conformationally Gated Probes of Embryonic Gene Function	Angewandte Chemie (International ed. in English)	2012	51(28)	6908-6911
ZDB-PUB-120702-34	22721777	Lim, S., Kumari, P., Gilligan, P., Quach, H.N., Mathavan, S., and Sampath, K.	Dorsal activity of maternal squint is mediated by a non-coding function of the RNA	Development (Cambridge, England)	2012	139(16)	2903-2915
ZDB-PUB-120706-11	22750409	Hinits, Y., Pan, L., Walker, C., Dowd, J., Moens, C.B., and Hughes, S.M.	Zebrafish Mef2ca and Mef2cb are essential for both first and second heart field cardiomyocyte differentiation	Developmental Biology	2012	369(2)	199-210
ZDB-PUB-120718-24	22788660	De Rienzo, G., Gutzman, J.H., and Sive, H.	Efficient shRNA-Mediated Inhibition of Gene Expression in Zebrafish	Zebrafish	2012	9(3)	97-107
ZDB-PUB-120727-37	22593577	Dodge, M.E., Moon, J., Tuladhar, R., Lu, J., Jacob, L.S., Zhang, L.S., Shi, H., Wang, X., Moro, E., Mongera, A., Argenton, F., Karner, C.M., Carroll, T.J., Chen, C., Amatruda, J.F., and Lum, L.	Diverse Chemical Scaffolds Support Direct Inhibition of the Membrane-bound O-Acyltransferase Porcupine	The Journal of biological chemistry	2012	287(27)	23246-23254
ZDB-PUB-120815-20	22890044	Yabe, T., and Takada, S.	Mesogenin causes embryonic mesoderm progenitors to differentiate during development of zebrafish tail somites	Developmental Biology	2012	370(2)	213-222
ZDB-PUB-120815-5	22884798	Nishiyama, T., Kaneda, R., Ono, T., Tohyama, S., Hashimoto, H., Endo, J., Tsuruta, H., Yuasa, S., Ieda, M., Makino, S., and Fukuda, K.	miR-142-3p is essential for hematopoiesis and affects cardiac cell fate in zebrafish	Biochemical and Biophysical Research Communications	2012	425(4)	755-761
ZDB-PUB-120822-15	22899848	Matsui, T., Sasaki, A., Akazawa, N., Otani, H., and Bessho, Y.	Celf1 regulation of dmrt2a is required for somite symmetry and left-right patterning during zebrafish development	Development (Cambridge, England)	2012	139(19)	3553-3560
ZDB-PUB-120830-1	22913532	Khan, A., Nakamoto, A., Tai, M., Saito, S., Nakayama, Y., Kawamura, A., Takeda, H., and Yamasu, K.	Mesendoderm specification depends on the function of Pou2, the class V POU-type transcription factor, during zebrafish embryogenesis	Development, growth & differentiation	2012	54(7)	686-701
ZDB-PUB-120830-19	22921661	Khan, A., Nakamoto, A., Okamoto, S., Tai, M., Nakayama, Y., Kobayashi, K., Kawamura, A., Takeda, H., and Yamasu, K.	Pou2, a class V POU-type transcription factor in zebrafish, regulates dorsoventral patterning and convergent extension movement at different blastula stages	Mechanisms of Development	2012	129(9-12)	219-235
ZDB-PUB-120830-39	22927438	Stengel, R., Rivera-Milla, E., Sahoo, N., Ebert, C., Bollig, F., Heinemann, S.H., Schonherr, R., and Englert, C.	Kcnh1 voltage-gated potassium channels are essential for early zebrafish development	The Journal of biological chemistry	2012	287(42)	35565-35575
ZDB-PUB-120830-8	22915831	Ahn, D., You, K.H., and Kim, C.H.	Evolution of the <em>Tbx6/16</em> Subfamily Genes in Vertebrates: Insights from Zebrafish	Mol. Biol. Evol.	2012	29(12)	3959-3983
ZDB-PUB-120907-15	22951640	Kok, F.O., Taibi, A., Wanner, S.J., Xie, X., Moravec, C.E., Love, C.E., Prince, V.E., Mumm, J.S., and Sirotkin, H.I.	Zebrafish rest regulates developmental gene expression but not neurogenesis	Development (Cambridge, England)	2012	139(20)	3838-3848
ZDB-PUB-121005-2	23002141	Wang, Y., Wu, L., Wang, P., Lv, C., Yang, Z., and Tang, X.	Manipulation of gene expression in zebrafish using caged circular morpholino oligomers	Nucleic acids research	2012	40(21)	11155-11162
ZDB-PUB-121019-24	23063620	Twigg, S.R., Lloyd, D., Jenkins, D., Elcioglu, N.E., Cooper, C.D., Al-Sannaa, N., Annagur, A., Gillessen-Kaesbach, G., Huning, I., Knight, S.J., Goodship, J.A., Keavney, B.D., Beales, P.L., Gileadi, O., McGowan, S.J., and Wilkie, A.O.	Mutations in Multidomain Protein MEGF8 Identify a Carpenter Syndrome Subtype Associated with Defective Lateralization	American journal of human genetics	2012	91(5)	897-905
ZDB-PUB-121102-39	23095890	Lai, S.L., Yao, W.L., Tsao, K.C., Houben, A.J., Albers, H.M., Ovaa, H., Moolenaar, W.H., and Lee, S.J.	Autotaxin/Lpar3 signaling regulates Kupffer's vesicle formation and left-right asymmetry in zebrafish	Development (Cambridge, England)	2012	139(23)	4439-4448
ZDB-PUB-121121-35	23132861	Tong, X., Xia, Z., Zu, Y., Telfer, H., Hu, J., Yu, J., Liu, H., Zhang, Q., Sodmergen, D., Lin, S., and Zhang, B.	Ngs (notochord granular surface) encodes a novel type of intermediate filament family protein essential for notochord maintenance in zebrafish	The Journal of biological chemistry	2013	288(4)	2711-2720
ZDB-PUB-121205-42	23172917	Fior, R., Maxwell, A.A., Ma, T.P., Vezzaro, A., Moens, C.B., Amacher, S.L., Lewis, J., and Saúde, L.	The differentiation and movement of presomitic mesoderm progenitor cells are controlled by Mesogenin 1	Development (Cambridge, England)	2012	139(24)	4656-4665
ZDB-PUB-121206-28	23201577	Qian, M., Yao, S., Jing, L., He, J., Xiao, C., Zhang, T., Meng, W., Zhu, H., Xu, H., and Mo, X.	ENC1-like Integrates the Retinoic Acid/FGF Signaling Pathways to Modulate Ciliogenesis of Kupffer's Vesicle during Zebrafish Embryonic Development	Developmental Biology	2013	374(1)	85-95
ZDB-PUB-121206-29	23201782	Castanon, I., Abrami, L., Holtzer, L., Heisenberg, C.P., van der Goot, F.G., and González-Gaitán, M.	Anthrax toxin receptor 2a controls mitotic spindle positioning	Nature cell biology	2013	15(1)	28-39
ZDB-PUB-121210-10	23213468	Chu, L.T., Fong, S.H., Kondrychyn, I., Loh, S.L., Ye, Z., and Korzh, V.	Yolk syncytial layer formation is a failure of cytokinesis mediated by Rock1 function in the early zebrafish embryo	Biology Open	2012	1(8)	747-753
ZDB-PUB-121210-11	23213474	Windner, S.E., Bird, N.C., Patterson, S.E., Doris, R.A., and Devoto, S.H.	Fss/Tbx6 is required for central dermomyotome cell fate in zebrafish	Biology Open	2012	1(8)	806-814
ZDB-PUB-121227-9	23260032	He, N.N., Li, X., Feng, D.F., Wu, M., Chen, R., Chen, T., Chen, D.Y., and Feng, X.Z.	Exploring the toxicity of a bismuth-asparagine coordination polymer on the early development of zebrafish embryos	Chemical Research in Toxicology	2013	26(1)	89-95
ZDB-PUB-130124-11	23308055	Beghini, A., Corlazzoli, F., Del Giacco, L., Re, M., Lazzaroni, F., Brioschi, M., Valentini, G., Ferrazzi, F., Ghilardi, A., Righi, M., Turrini, M., Mignardi, M., Cesana, C., Bronte, V., Nilsson, M., Morra, E., and Cairoli, R.	Regeneration-associated WNT Signaling Is Activated in Long-term Reconstituting AC133(bright) Acute Myeloid Leukemia Cells	Neoplasia (New York, N.Y.)	2012	14(12)	1236-1248
ZDB-PUB-130124-24	23318642	Ye, D., and Lin, F.	S1pr2/Gα<sub>13</sub> signaling controls myocardial migration by regulating endoderm convergence	Development (Cambridge, England)	2013	140(4)	789-799
ZDB-PUB-130125-16	23326522	Espina, J., Feijoo, C.G., Solis, C., and Glavic, A.	csrnp1a Is Necessary for the Development of Primitive Hematopoiesis Progenitors in Zebrafish	PLoS One	2013	8(1)	e53858
ZDB-PUB-130204-1	23349976	Nikaido, M., Law, E.W., and Kelsh, R.N.	A Systematic Survey of Expression and Function of Zebrafish frizzled Genes	PLoS One	2013	8(1)	e54833
ZDB-PUB-130208-3	23358434	Lenhart, K.F., Holtzman, N.G., Williams, J.R., and Burdine, R.D.	Integration of Nodal and BMP Signals in the Heart Requires FoxH1 to Create Left-Right Differences in Cell Migration Rates That Direct Cardiac Asymmetry	PLoS Genetics	2013	9(1)	e1003109
ZDB-PUB-130211-10	23364327	Zhao, J., Lambert, G., Meijer, A.H., and Rosa, F.M.	The transcription factor Vox represses endoderm development by interacting with Casanova and Pou2	Development (Cambridge, England)	2013	140(5)	1090-1099
ZDB-PUB-130218-7	23378068	Dong, Z., Peng, J., and Guo, S.	Stable Gene Silencing in Zebrafish with Spatiotemporally Targetable RNA Interference	Genetics	2013	193(4)	1065-1071
ZDB-PUB-130309-13	23430244	Kjaer-Sorensen, K., Engholm, D.H., Kamei, H., Morch, M.G., Kristensen, A.O., Zhou, J., Conover, C.A., Duan, C., and Oxvig, C.	Pregnancy-associated plasma protein-A (PAPP-A) modulates early developmental rate in zebrafish independent of its proteolytic activity	The Journal of biological chemistry	2013	288(14)	9982-92
ZDB-PUB-130312-20	23443939	Taibi, A., Mandavawala, K.P., Noel, J., Okoye, E.V., Milano, C.R., Martin, B.L., and Sirotkin, H.I.	Zebrafish churchill regulates developmental gene expression and cell migration	Developmental Dynamics : an official publication of the American Association of Anatomists	2013	242(6)	614-21
ZDB-PUB-130402-7	23469052	Kuo, C.L., Lam, C.M., Hewitt, J.E., and Scotting, P.J.	Formation of the Embryonic Organizer Is Restricted by the Competitive Influences of Fgf Signaling and the SoxB1 Transcription Factors	PLoS One	2013	8(2)	e57698
ZDB-PUB-130403-23	23487313	Navis, A., Marjoram, L., and Bagnat, M.	Cftr controls lumen expansion and function of Kupffer's vesicle in zebrafish	Development (Cambridge, England)	2013	140(8)	1703-1712
ZDB-PUB-130405-1	23494967	Hu, J., Sun, S., Jiang, Q., Sun, S., Wang, W., Gui, Y., and Song, H.	Yes-associated protein (yap) is required for early embryonic development in zebrafish (danio rerio)	International journal of biological sciences	2013	9(3)	267-278
ZDB-PUB-130405-5	23499359	Veerkamp, J., Rudolph, F., Cseresnyes, Z., Priller, F., Otten, C., Renz, M., Schaefer, L., and Abdelilah-Seyfried, S.	Unilateral dampening of bmp activity by nodal generates cardiac left-right asymmetry	Developmental Cell	2013	24(6)	660-667
ZDB-PUB-130410-29	23537994	Wang, Y.W., Wei, C.Y., Dai, H.P., Zhu, Z.Y., and Sun, Y.H.	Subtractive phage display technology identifies zebrafish marcksb that is required for gastrulation	Gene	2013	521(1)	69-77
ZDB-PUB-130412-18	23536566	Hashiguchi, M., and Mullins, M.C.	Anteroposterior and dorsoventral patterning are coordinated by an identical patterning clock	Development (Cambridge, England)	2013	140(9)	1970-1980
ZDB-PUB-130417-1	23598338	Amemiya, C.T., Alfoldi, J., Lee, A.P., Fan, S., Philippe, H., MacCallum, I., Braasch, I., Manousaki, T., Schneider, I., Rohner, N., Organ, C., Chalopin, D., Smith, J.J., Robinson, M., Dorrington, R.A., Gerdol, M., Aken, B., Biscotti, M.A., Barucca, M., Baurain, D., Berlin, A.M., Blatch, G.L., Buonocore, F., Burmester, T., Campbell, M.S., Canapa, A., Cannon, J.P., Christoffels, A., de Moro, G., Edkins, A.L., Fan, L., Fausto, A.M., Feiner, N., Forconi, M., Gamieldien, J., Gnerre, S., Gnirke, A., Goldstone, J.V., Haerty, W., Hahn, M.E., Hesse, U., Hoffmann, S., Johnson, J., Karchner, S.I., Karaku, S., Lara, M., Levin, J.Z., Litman, G.W., Mauceli, E., Miyake, T., Mueller, M.G., Nelson, D.R., Nitsche, A., Olmo, E., Ota, T., Pallavicini, A., Panji, S., Picone, B., Ponting, C.P., Prohaska, S.J., Przybylski, D., Saha, N.R., Ravi, V., Ribeiro, F.J., Sauka-Spengler, T., Scapigliati, G., Searle, S.M.J., Sharpe, T., Simakov, O., Stadler, P.F., Stegeman, J.J., Sumiyama, K., Tabbaa, D., Tafer, H., Turner-Maier, J., van Heusden, P., White, S., Williams, L., Yandell, M., Brinkmann, H., Volff, J.N., Tabin, C.J., Shubin, N., Schartl, M., Jaffe, D.B., Postlethwait, J.H., Venkatesh, B., Palma, F.D., Lander, E.S., Meyer, A., and Lindblad-Toh, K.	The African coelacanth genome provides insights into tetrapod evolution	Nature	2013	496	311-316
ZDB-PUB-130423-15	23591895	Liu, X., Xiong, C., Jia, S., Zhang, Y., Chen, Y.G., Wang, Q., and Meng, A.	Araf kinase antagonizes Nodal-Smad2 activity in mesendoderm development by directly phosphorylating the Smad2 linker region	Nature communications	2013	4	1728
ZDB-PUB-130605-16	23638093	Stuckenholz, C., Lu, L., Thakur, P.C., Choi, T.Y., Shin, D., and Bahary, N.	Sfrp5 Modulates Both Wnt and BMP Signaling and Regulates Gastrointestinal Organogensis in the Zebrafish, <em>Danio rerio</em>	PLoS One	2013	8(4)	e62470
ZDB-PUB-130610-48	23663776	Potok, M.E., Nix, D.A., Parnell, T.J., and Cairns, B.R.	Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern	Cell	2013	153(4)	759-772
ZDB-PUB-130610-63	23667256	Vannier, C., Mock, K., Brabletz, T., and Driever, W.	Zeb1 regulates E-cadherin and Epcam expression to control cell behavior in early zebrafish development	The Journal of biological chemistry	2013	288(26)	18643-59
ZDB-PUB-130708-15	23715551	Cheng, P., Andersen, P., Hassel, D., Kaynak, B.L., Limphong, P., Juergensen, L., Kwon, C., and Srivastava, D.	Fibronectin mediates mesendodermal cell fate decisions	Development (Cambridge, England)	2013	140(12)	2587-2596
ZDB-PUB-130708-3	23712262	Barriga, E.H., Maxwell, P.H., Reyes, A.E., and Mayor, R.	The hypoxia factor Hif-1alpha controls neural crest chemotaxis and epithelial to mesenchymal transition	The Journal of cell biology	2013	201(5)	759-776
ZDB-PUB-130709-13	23739134	Lee, R.T., Knapik, E.W., Thiery, J.P., and Carney, T.J.	An exclusively mesodermal origin of fin mesenchyme demonstrates that zebrafish trunk neural crest does not generate ectomesenchyme	Development (Cambridge, England)	2013	140(14)	2923-2932
ZDB-PUB-130709-51	23757411	Hochgreb-Hägele, T., Yin, C., Koo, D.E., Bronner, M.E., and Stainier, D.Y.	Laminin beta1a controls distinct steps during the establishment of digestive organ laterality	Development (Cambridge, England)	2013	140(13)	2734-2745
ZDB-PUB-130709-53	23758124	Kao, T.T., Lee, G.H., Fu, C.C., Chen, B.H., Chen, L.T., and Fu, T.F.	Methotrexate-Induced Decrease in Embryonic 5-Methyl-Tetrahydrofolate Is Irreversible with Leucovorin Supplementation	Zebrafish	2013	10(3)	326-37
ZDB-PUB-130710-51	23791819	Peterson, A.G., Wang, X., and Yost, H. J.	Dvr1 transfers left-right asymmetric signals from Kupffer's vesicle to lateral plate mesoderm in zebrafish	Developmental Biology	2013	382(1)	198-208
ZDB-PUB-130726-15	23860396	Huang, C.J., Wilson, V., Pennings, S., MacRae, C.A., and Mullins, J.	Sequential effects of spadetail, one-eyed pinhead and no tail on midline convergence of nephric primordia during zebrafish embryogenesis	Developmental Biology	2013	384(2)	290-300
ZDB-PUB-130805-22	23873367	Sesé, B., Barrero, M.J., Fabregat, M.C., Sander, V., and Izpisua Belmonte, J.C.	SMYD2 is induced during cell differentiation and participates in early development	The International journal of developmental biology	2013	57(5)	357-364
ZDB-PUB-130807-2	23884438	Xiao, Y., Zhou, Y., Xiong, Z., Zou, L., Jiang, M., Luo, Z., Wen, S., Liu, W., Liu, S., and Li, W.	Involvement of JNK in the Embryonic Development and Organogenesis in Zebrafish	Marine biotechnology (New York, N.Y.)	2013	15(6)	716-25
ZDB-PUB-130816-37	23903195	Novikov, N., and Evans, T.	Tmem88a mediates GATA-dependent specification of cardiomyocyte progenitors by restricting WNT signaling	Development (Cambridge, England)	2013	140(18)	3787-98
ZDB-PUB-130816-7	23892894	Wang, S., Yin, J., Chen, D., Nie, F., Song, X., Fei, C., Miao, H., Jing, C., Ma, W., Wang, L., Xie, S., Li, C., Zeng, R., Pan, W., Hao, X., and Li, L.	Small-molecule modulation of Wnt signaling via modulating the Axin-LRP5/6 interaction	Nature Chemical Biology	2013	9(9)	579-85
ZDB-PUB-130825-7	23913342	Lam, P.Y., Kamei, C.N., Mangos, S., Mudumana, S., Liu, Y., and Drummond, I.A.	odd-skipped related 2 is required for fin chondrogenesis in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2013	242(11)	1284-92
ZDB-PUB-130830-11	23922899	Fodor, E., Zsigmond, A., Horváth, B., Molnár, J., Nagy, I., Tóth, G., Wilson, S.W., and Varga, M.	Full transcriptome analysis of early dorsoventral patterning in zebrafish	PLoS One	2013	8(7)	e70053
ZDB-PUB-130903-36	23942336	Prudent, J., Popgeorgiev, N., Bonneau, B., Thibaut, J., Gadet, R., Lopez, J., Gonzalo, P., Rimokh, R., Manon, S., Houart, C., Herbomel, P., Aouacheria, A., and Gillet, G.	Bcl-wav and the mitochondrial calcium uniporter drive gastrula morphogenesis in zebrafish	Nature communications	2013	4	2330
ZDB-PUB-130903-45	23946439	Neugebauer, J.M., Cadwallader, A.B., Amack, J.D., Bisgrove, B.W., and Yost, H.J.	Differential roles for 3-OSTs in the regulation of cilia length and motility	Development (Cambridge, England)	2013	140(18)	3892-3902
ZDB-PUB-130903-52	23950494	Leichsenring, M., Maes, J., Mössner, R., Driever, W., and Onichtchouk, D.	Pou5f1 transcription factor controls zygotic gene activation in vertebrates	Science (New York, N.Y.)	2013	341(6149)	1005-1009
ZDB-PUB-130904-35	23972986	Burkhalter, M.D., Fralish, G.B., Premont, R.T., Caron, M.G., and Philipp, M.	Grk5l Controls Heart Development by Limiting mTOR Signaling during Symmetry Breaking	Cell Reports	2013	4(4)	625-632
ZDB-PUB-130905-3	23987510	Özhan, G., Sezgin, E., Wehner, D., Pfister, A.S., Kühl, S.J., Kagermeier-Schenk, B., Kühl, M., Schwille, P., and Weidinger, G.	Lypd6 Enhances Wnt/beta-Catenin Signaling by Promoting Lrp6 Phosphorylation in Raft Plasma Membrane Domains	Developmental Cell	2013	26(4)	331-345
ZDB-PUB-130905-5	23988578	Sittaramane, V., Pan, X., Glasco, D.M., Huang, P., Gurung, S., Bock, A., Li, S., Wang, H., Kawakami, K., Matise, M.P., and Chandrasekhar, A.	The PCP protein Vangl2 regulates migration of hindbrain motor neurons by acting in floor plate cells, and independently of cilia function	Developmental Biology	2013	382(2)	400-412
ZDB-PUB-130909-3	24008197	Warga, R.M., Mueller, R.L., Ho, R.K., and Kane, D.A.	Zebrafish Tbx16 regulates intermediate mesoderm cell fate by attenuating Fgf activity	Developmental Biology	2013	383(1)	75-89
ZDB-PUB-130919-1	24040511	Kumari, P., Gilligan, P.C., Lim, S., Tran, L.D., Winkler, S., Philp, R., and Sampath, K.	An essential role for maternal control of Nodal signaling	eLIFE	2013	2	e00683
ZDB-PUB-130927-15	24040418	Jayashankar, V., Nguyen, M.J., Carr, B.W., Zheng, D.C., Rosales, J.B., Rosales, J.B., and Weiser, D.C.	Protein Phosphatase 1 beta Paralogs Encode the Zebrafish Myosin Phosphatase Catalytic Subunit	PLoS One	2013	8(9)	e75766
ZDB-PUB-130927-28	24046318	Colombo, A., Palma, K., Armijo, L., Mione, M., Signore, I.A., Morales, C., Guerrero, N., Meynard, M.M., Pérez, R., Suazo, J., Marcelain, K., Briones, L., Härtel, S., Wilson, S.W., and Concha, M.L.	Daam1a mediates asymmetric habenular morphogenesis by regulating dendritic and axonal outgrowth	Development (Cambridge, England)	2013	140(19)	3997-4007
ZDB-PUB-130927-31	24046323	Arrington, C.B., Peterson, A.G., and Yost, H.J.	Sdc2 and Tbx16 regulate Fgf2-dependent epithelial cell morphogenesis in the ciliated organ of asymmetry	Development (Cambridge, England)	2013	140(19)	4102-4109
ZDB-PUB-131021-10	24056933	Lee, M.T., Bonneau, A.R., Takacs, C.M., Bazzini, A.A., Divito, K.R., Fleming, E.S., and Giraldez, A.J.	Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition	Nature	2013	503(7476)	360-4
ZDB-PUB-131024-7	24063403	Masuda, S., Nakatani, Y., Ren, S., and Tanaka, M.	Blue Light-Mediated Manipulation of Transcription Factor Activity In Vivo	ACS Chemical Biology	2013	8(12)	2649-53
ZDB-PUB-131108-24	24095732	Borovina, A., and Ciruna, B.	IFT88 Plays a Cilia- and PCP-Independent Role in Controlling Oriented Cell Divisions during Vertebrate Embryonic Development	Cell Reports	2013	5(1)	37-43
ZDB-PUB-131119-11	24131633	Corallo, D., Schiavinato, A., Trapani, V., Moro, E., Argenton, F., and Bonaldo, P.	Emilin3 is required for notochord sheath integrity and interacts with Scube2 to regulate notochord-derived Hedgehog signals	Development (Cambridge, England)	2013	140(22)	4594-4601
ZDB-PUB-131121-17	24156917	Liu, X., Ma, Y., Zhang, C., Wei, S., Cao, Y., and Wang, Q.	Nodal Promotes mir206 Expression to Control Convergence and Extension Movements During Zebrafish Gastrulation	Journal of genetics and genomics = Yi chuan xue bao	2013	40(10)	515-521
ZDB-PUB-131121-18	24156918	Gu, Q., Yang, X., He, X., Li, Q., and Cui, Z.	Generation and characterization of a transgenic zebrafish expressing the reverse tetracycline transactivator	Journal of genetics and genomics = Yi chuan xue bao	2013	40(10)	523-531
ZDB-PUB-131122-18	24177263	Xu, X., Shuen, W.H., Chen, C., Goudevenou, K., Jones, P., and Sablitzky, F.	Swap70b is required for convergent and extension cell movement during zebrafish gastrulation linking Wnt11 signalling and RhoA effector function	Developmental Biology	2014	386(1)	191-203
ZDB-PUB-131122-3	24167711	Sarmah, S., Muralidharan, P., Curtis, C.L., McClintick, J.N., Buente, B.B., Holdgrafer, D.J., Ogbeifun, O., Olorungbounmi, O.C., Patino, L., Lucas, R., Gilbert, S., Groninger, E.S., Arciero, J., Edenberg, H.J., and Marrs, J.A.	Ethanol exposure disrupts extraembryonic microtubule cytoskeleton and embryonic blastomere cell adhesion, producing epiboly and gastrulation defects	Biology Open	2013	2(10)	1013-1021
ZDB-PUB-131204-11	24204286	Kapp, L.D., Abrams, E.W., Marlow, F.L., and Mullins, M.C.	The integrator complex subunit 6 (ints6) confines the dorsal organizer in vertebrate embryogenesis	PLoS Genetics	2013	9(10)	e1003822
ZDB-PUB-131204-12	24204288	Winata, C.L., Kondrychyn, I., Kumar, V., Srinivasan, K.G., Orlov, Y., Ravishankar, A., Prabhakar, S., Stanton, L.W., Korzh, V., and Mathavan, S.	Genome wide analysis reveals zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish	PLoS Genetics	2013	9(10)	e1003852
ZDB-PUB-140106-3	24316148	Chng, S.C., Ho, L., Tian, J., and Reversade, B.	ELABELA: A Hormone Essential for Heart Development Signals via the Apelin Receptor	Developmental Cell	2013	27(6)	672-680
ZDB-PUB-140113-10	24277077	Li, L., Chen, D., Li, J., Wang, X., Wang, N., Xu, C., and Wang, Q.K.	Aggf1 acts at the top of the genetic regulatory hierarchy in specification of hemangioblasts in zebrafish	Blood	2014	123(4)	501-8
ZDB-PUB-140113-23	24281726	Brunet, T., Bouclet, A., Ahmadi, P., Mitrossilis, D., Driquez, B., Brunet, A.C., Henry, L., Serman, F., Béalle, G., Ménager, C., Dumas-Bouchiat, F., Givord, D., Yanicostas, C., Le-Roy, D., Dempsey, N.M., Plessis, A., and Farge, E.	Evolutionary conservation of early mesoderm specification by mechanotransduction in Bilateria	Nature communications	2013	4	2821
ZDB-PUB-140123-11	24292884	Anuppalle, M., Maddirevula, S., Huh, T.L., and Rhee, M.	Trb3 Regulates LR Axis formation in zebrafish embryos	Molecules and cells	2013	36(6)	542-547
ZDB-PUB-140123-18	24296303	He, Y., Xu, X., Zhao, S., Ma, S., Sun, L., Liu, Z., and Luo, C.	Maternal control of axial-paraxial mesoderm patterning via direct transcriptional repression in zebrafish	Developmental Biology	2014	386(1)	96-110
ZDB-PUB-140210-23	24332754	Miyares, R.L., Stein, C., Renisch, B., Anderson, J.L., Hammerschmidt, M., and Farber, S.A.	Long-Chain Acyl-CoA Synthetase 4A Regulates Smad Activity and Dorsoventral Patterning in the Zebrafish Embryo	Developmental Cell	2013	27(6)	635-647
ZDB-PUB-140210-26	24333179	Wylie, A.D., Fleming, J.A., Whitener, A.E., and Lekven, A.C.	Post-transcriptional regulation of wnt8a is essential to zebrafish axis development	Developmental Biology	2014	386(1)	53-63
ZDB-PUB-140210-36	24335906	Ye, Z., Zhang, C., Tu, T., Sun, M., Liu, D., Lu, D., Feng, J., Yang, D., Liu, F., and Yan, X.	Wnt5a uses CD146 as a receptor to regulate cell motility and convergent extension	Nature communications	2013	4	2803
ZDB-PUB-140303-22	24386347	Huang, W., Zheng, J., He, Y., and Luo, C.	Tandem repeat modification during double-strand break repair induced by an engineered TAL effector nuclease in zebrafish genome	PLoS One	2013	8(12)	e84176
ZDB-PUB-140303-9	24380799	Eroglu, B., Min, J.N., Zhang, Y., Szurek, E., Moskophidis, D., Eroglu, A., and Mivechi, N.F.	An essential role for heat shock transcription factor binding protein 1 (HSBP1) during early embryonic development	Developmental Biology	2014	386(2)	448-460
ZDB-PUB-140317-11	24407421	Ping, X.L., Sun, B.F., Wang, L., Xiao, W., Yang, X., Wang, W.J., Adhikari, S., Shi, Y., Lv, Y., Chen, Y.S., Zhao, X., Li, A., Yang, Y., Dahal, U., Lou, X.M., Liu, X., Huang, J., Yuan, W.P., Zhu, X.F., Cheng, T., Zhao, Y.L., Wang, X., Rendtlew Danielsen, J.M., Liu, F., and Yang, Y.G.	Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase	Cell Research	2014	24(2)	177-189
ZDB-PUB-140317-12	24407481	Pauli, A., Norris, M.L., Valen, E., Chew, G.L., Gagnon, J.A., Zimmerman, S., Mitchell, A., Ma, J., Dubrulle, J., Reyon, D., Tsai, S.Q., Joung, J.K., Saghatelian, A., and Schier, A.F.	Toddler: an embryonic signal that promotes cell movement via Apelin receptors	Science (New York, N.Y.)	2014	343(6172)	1248636
ZDB-PUB-140321-42	24462977	Superina, S., Borovina, A., and Ciruna, B.	Analysis of maternal-zygotic ugdh mutants reveals divergent roles for HSPGs in vertebrate embryogenesis and provides new insight into the initiation of left-right asymmetry	Developmental Biology	2014	387(2)	154-166
ZDB-PUB-140402-20	24475127	Bontems, F., Fish, R.J., Borlat, I., Lembo, F., Chocu, S., Chalmel, F., Borg, J.P., Pineau, C., Neerman-Arbez, M., Bairoch, A., and Lane, L.	C2orf62 and TTC17 Are Involved in Actin Organization and Ciliogenesis in Zebrafish and Human	PLoS One	2014	9(1)	e86476
ZDB-PUB-140402-8	24469395	Zhai, G., Gu, Q., He, J., Lou, Q., Chen, X., Jin, X., Bi, E., and Yin, Z.	Sept6 Is Required for Ciliogenesis in Kupffer's Vesicle, the Pronephros, and the Neural Tube during Early Embryonic Development	Molecular and cellular biology	2014	34(7)	1310-1321
ZDB-PUB-140410-10	24488494	Wei, C.Y., Wang, H.P., Zhu, Z.Y., and Sun, Y.H.	Transcriptional factors Smad1 and Smad9 act redundantly to mediate zebrafish ventral specification downstream of Smad5	The Journal of biological chemistry	2014	289(10)	6604-18
ZDB-PUB-140428-1	24755297	Araya, C., Tawk, M., Girdler, G.C., Costa, M., Carmona-Fontaine, C., and Clarke, J.D.	Mesoderm is required for coordinated cell movements within zebrafish neural plate in vivo	Neural Development	2014	9(1)	9
ZDB-PUB-140509-7	24531765	Haberle, V., Li, N., Hadzhiev, Y., Plessy, C., Previti, C., Nepal, C., Gehrig, J., Dong, X., Akalin, A., Suzuki, A.M., van IJcken, W.F., Armant, O., Ferg, M., Strähle, U., Carninci, P., Müller, F., and Lenhard, B.	Two independent transcription initiation codes overlap on vertebrate core promoters	Nature	2014	507(7492)	381-385
ZDB-PUB-140513-121	24747731	Chang, W.N., Lee, G.H., Kao, T.T., Lin, C.Y., Hsiao, T.H., Tsai, J.N., Chen, B.H., Chen, Y.H., Wu, H.R., Tsai, H.J., Fu, T.F.	Knocking down 10-formyltetrahydrofolate dehydrogenase increased oxidative stress and impeded zebrafish embryogenesis by obstructing morphogenetic movement	Biochimica et biophysica acta. General subjects	2014	1840(7)	2340-2350
ZDB-PUB-140513-179	24712299	Choi, H.M., Beck, V.A., Pierce, N.A.	Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability	ACS nano	2014	8(5)	4284-94
ZDB-PUB-140513-202	24702307	Chen, X., Shi, W., Wang, F., Du, Z., Yang, Y., Gao, M., Yao, Y., He, K., Wang, C., Hao, A.	Zinc finger DHHC-type containing 13 regulates fate specification of ectoderm and mesoderm cell lineages by modulating Smad6 activity	Stem cells and development	2014	23(16)	1899-909
ZDB-PUB-140513-206	24700857	Xu, P.F., Houssin, N., Ferri-Lagneau, K.F., Thisse, B., Thisse, C.	Construction of a vertebrate embryo from two opposing morphogen gradients	Science (New York, N.Y.)	2014	344	87-9
ZDB-PUB-140513-227	24691442	Li, C., Ma, H., Wang, Y., Cao, Z., Graves-Deal, R., Powell, A.E., Starchenko, A., Ayers, G.D., Washington, M.K., Kamath, V., Desai, K., Gerdes, M.J., Solnica-Krezel, L., Coffey, R.J.	Excess PLAC8 promotes an unconventional ERK2-dependent EMT in colon cancer	J. Clin. Invest.	2014	124(5)	2172-87
ZDB-PUB-140513-323	24643012	Kotkamp, K., Kur, E., Wendik, B., Polok, B.K., Ben-Dor, S., Onichtchouk, D., Driever, W.	Pou5f1/Oct4 promotes cell survival via direct activation of mych expression during zebrafish gastrulation	PLoS One	2014	9	e92356
ZDB-PUB-140513-402	24599960	Fitzpatrick, P., Shattil, S.J., Ablooglu, A.J.	C-terminal COOH of Integrin beta1 Is Necessary for beta1 Association with the Kindlin-2 Adapter Protein	The Journal of biological chemistry	2014	289	11183-93
ZDB-PUB-140513-413	24595291	Bajard, L., Morelli, L.G., Ares, S., Pécréaux, J., Jülicher, F., Oates, A.C.	Wnt-regulated dynamics of positional information in zebrafish somitogenesis	Development (Cambridge, England)	2014	141	1381-91
ZDB-PUB-140513-62	24780629	Fuller, K., O'connell, J.T., Gordon, J., Mauti, O., Eggenschwiler, J.	Rab23 regulates Nodal signaling in vertebrate left-right patterning independently of the Hedgehog pathway	Developmental Biology	2014	391(2)	182-195
ZDB-PUB-140516-11	24823378	Kelly, M.L., Astsaturov, A., Rhodes, J., Chernoff, J.	A Pak1/Erk Signaling Module Acts through Gata6 to Regulate Cardiovascular Development in Zebrafish	Developmental Cell	2014	29	350-9
ZDB-PUB-140523-13	24844180	Ganassi, M., Badodi, S., Polacchini, A., Baruffaldi, F., Battini, R., Hughes, S.M., Hinits, Y., Molinari, S.	Distinct functions of alternatively spliced isoforms encoded by zebrafish mef2ca and mef2cb	Biochimica et biophysica acta. Gene regulatory mechanisms	2014	1839(7)	559-70
ZDB-PUB-140529-6	24865967	Paardekooper Overman, J., Yi, J.S., Bonetti, M., Soulsby, M., Preisinger, C., Stokes, M.P., Hui, L., Silva, J.C., Overvoorde, J., Giansanti, P., Heck, A.J., Kontaridis, M.I., den Hertog, J., Bennett, A.M.	PZR Coordinates Shp2 Noonan and LEOPARD Syndrome Signaling in Zebrafish and Mice	Molecular and cellular biology	2014	34(15)	2874-89
ZDB-PUB-140604-3	24892953	Du, T.T., Xu, P.F., Dong, Z.W., Fan, H.B., Jin, Y., Dong, M., Chen, Y., Pan, W.J., Ren, R.B., Liu, T.X., Deng, M., Huang, Q.H.	Setdb2 controls convergence and extension movements during zebrafish gastrulation by transcriptional regulation of dvr1	Developmental Biology	2014	392(2)	233-44
ZDB-PUB-140611-5	24913269	Cooper, T.K., Murray, K.N., Spagnoli, S., Spitsbergen, J.M.	Primary Intestinal and Vertebral Chordomas in Laboratory Zebrafish (Danio rerio)	Veterinary Pathology	2015	52(2)	388-92
ZDB-PUB-140620-6	24945246	Castro-González, C., Luengo-Oroz, M.A., Duloquin, L., Savy, T., Rizzi, B., Desnoulez, S., Doursat, R., Kergosien, Y.L., Ledesma-Carbayo, M.J., Bourgine, P., Peyriéras, N., Santos, A.	A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis	PLoS Computational Biology	2014	10	e1003670
ZDB-PUB-140712-4	25013380	Xiao, Q., Xia, J.H., Zhang, X.J., Li, Z., Wang, Y., Zhou, L., Gui, J.F.	Type-IV Antifreeze Proteins are Essential for Epiboly and Convergence in Gastrulation of Zebrafish Embryos	International journal of biological sciences	2014	10	715-32
ZDB-PUB-140730-3	25071022	Ferrari, L., Pistocchi, A., Libera, L., Boari, N., Mortini, P., Bellipanni, G., Giordano, A., Cotelli, F., Riva, P.	FAS/FASL are dysregulated in chordoma and their loss-of-function impairs zebrafish notochord formation	Oncotarget	2014	5(14)	5712-5724
ZDB-PUB-140730-6	25069083	Yamazoe, S., McQuade, L.E., Chen, J.K.	Nitroreductase-Activatable Morpholino Oligonucleotides for in Vivo Gene Silencing	ACS Chemical Biology	2014	9(9)	1985-90
ZDB-PUB-140819-4	25130695	Yamazoe, S., Liu, Q., McQuade, L.E., Deiters, A., Chen, J.K.	Sequential Gene Silencing Using Wavelength-Selective Caged Morpholino Oligonucleotides	Angewandte Chemie (International ed. in English)	2014	53(38)	10114-8
ZDB-PUB-140826-7	25150888	Xu, X., He, Y., Sun, L., Ma, S., Luo, C.	Maternal Vsx1 plays an essential role in regulating prechordal mesendoderm and forebrain formation in zebrafish	Developmental Biology	2014	394(2)	264-76
ZDB-PUB-140828-6	25159144	Shimizu, N., Ishitani, S., Sato, A., Shibuya, H., Ishitani, T.	Hipk2 and PP1c Cooperate to Maintain Dvl Protein Levels Required for Wnt Signal Transduction	Cell Reports	2014	8(5)	1391-404
ZDB-PUB-140830-3	25170925	Maragh, S., Miller, R.A., Bessling, S.L., Wang, G., Hook, P.W., McCallion, A.S.	Rbm24a and Rbm24b Are Required for Normal Somitogenesis	PLoS One	2014	9	e105460
ZDB-PUB-140901-3	25173875	Khuansuwan, S., Gamse, J.T.	Identification of differentially expressed genes during development of the zebrafish pineal complex using RNA sequencing	Developmental Biology	2014	395(1)	144-53
ZDB-PUB-140904-3	25184253	Paardekooper Overman, J., Preisinger, C., Prummel, K., Bonetti, M., Giansanti, P., Heck, A., Hertog, J.D.	Phosphoproteomics-Mediated Identification of Fer Kinase as a Target of Mutant Shp2 in Noonan and LEOPARD Syndrome	PLoS One	2014	9	e106682
ZDB-PUB-140904-4	25183871	Kizil, C., Küchler, B., Yan, J.J., Özhan, G., Moro, E., Argenton, F., Brand, M., Weidinger, G., Antos, C.L.	Simplet/Fam53b is required for Wnt signal transduction by regulating β-catenin nuclear localization	Development (Cambridge, England)	2014	141	3529-39
ZDB-PUB-140904-5	25183869	Young, T., Poobalan, Y., Tan, E.K., Tao, S., Ong, S., Wehner, P., Schwenty-Lara, J., Lim, C.Y., Sadasivam, A., Lovatt, M., Wang, S.T., Ali, Y., Borchers, A., Sampath, K., Dunn, N.R.	The PDZ domain protein Mcc is a novel effector of non-canonical Wnt signaling during convergence and extension in zebrafish	Development (Cambridge, England)	2014	141	3505-16
ZDB-PUB-140923-29	25233796	Terashima, A.V., Mudumana, S.P., Drummond, I.A.	Odd skipped related 1 is a negative feedback regulator of Nodal-induced endoderm development	Developmental Dynamics : an official publication of the American Association of Anatomists	2014	243(12)	1571-80
ZDB-PUB-140928-5	25260724	Ostrup, O., Reiner, A.H., Aleström, P., Collas, P.	The specific alteration of histone methylation profiles by DZNep during early zebrafish development	Biochimica et biophysica acta. Gene regulatory mechanisms	2014	1839(11)	1307-15
ZDB-PUB-141004-6	25277163	Nelson, A.C., Cutty, S.J., Niini, M., Stemple, D.L., Flicek, P., Houart, C., Bruce, A., Wardle, F.C.	Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression	BMC Biology	2014	12	81
ZDB-PUB-141007-7	25283277	Buchan, J.G., Gray, R.S., Gansner, J.M., Alvarado, D.M., Burgert, L., Gitlin, J.D., Gurnett, C.A., Goldsmith, M.I.	Kinesin family member 6 (kif6) is necessary for spine development in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2014	243(12)	1646-57
ZDB-PUB-141125-5	25417113	Junker, J.P., Noël, E.S., Guryev, V., Peterson, K.A., Shah, G., Huisken, J., McMahon, A.P., Berezikov, E., Bakkers, J., van Oudenaarden, A.	Genome-wide RNA Tomography in the Zebrafish Embryo	Cell	2014	159	662-75
ZDB-PUB-141206-3	25478908	Kenyon, E.J., Campos, I., Bull, J.C., Williams, P.H., Stemple, D.L., Clark, M.D.	Zebrafish Rab5 Proteins and a role for Rab5ab in nodal signalling	Developmental Biology	2015	397(2)	212-24
ZDB-PUB-141218-7	25516974	Labalette, C., Wassef, M.A., Desmarquet-Trin Dinh, C., Bouchoucha, Y.X., Le Men, J., Charnay, P., Gilardi-Hebenstreit, P.	Molecular dissection of segment formation in the developing hindbrain	Development (Cambridge, England)	2015	142	185-95
ZDB-PUB-150114-1	19465602	Shao, M., Liu, Z.Z., Wang, C.D., Li, H.Y., Carron, C., Zhang, H.W., and Shi, D.L.	Down syndrome critical region protein 5 regulates membrane localization of Wnt receptors, Dishevelled stability and convergent extension in vertebrate embryos	Development (Cambridge, England)	2009	136(12)	2121-31
ZDB-PUB-150122-7	25605329	Yang, X., Gu, Q., Lin, L., Li, S., Zhong, S., Li, Q., Cui, Z.	Nucleoporin 62-like protein activates canonical Wnt signaling through facilitating the nuclear import of &beta;-catenin in zebrafish	Molecular and cellular biology	2015	35(7)	1110-24
ZDB-PUB-150127-6	25619648	Bessarab, D.A., Mathavan, S., Jones, C.M., Ray Dunn, N.	Zebrafish Rnf111 is encoded by multiple transcripts and is required for epiboly progression and prechordal plate development	Differentiation; research in biological diversity	2015	89(1-2)	22-30
ZDB-PUB-150211-16	25665164	Gu, W., Monteiro, R., Zuo, J., Simões, F.C., Martella, A., Andrieu-Soler, C., Grosveld, F., Sauka-Spengler, T., Patient, R.	A Novel TGFβ Modulator that Uncouples R-Smad/I-Smad-Mediated Negative Feedback from R-Smad/Ligand-Driven Positive Feedback	PLoS Biology	2015	13	e1002051
ZDB-PUB-150217-3	25684355	Tessadori, F., Noël, E.S., Rens, E.G., Magliozzi, R., Evers-van Gogh, I.J., Guardavaccaro, D., Merks, R.M., Bakkers, J.	Nodal Signaling Range Is Regulated by Proprotein Convertase-Mediated Maturation	Developmental Cell	2015	32(5)	631-9
ZDB-PUB-150225-2	25710382	Dumortier, J.G., David, N.B.	The TORC2 Component, Sin1, Controls Migration of Anterior Mesendoderm during Zebrafish Gastrulation	PLoS One	2015	10	e0118474
ZDB-PUB-150226-11	25711926	Oka, Y., Sato, T.N.	Whole-mount single molecule FISH method for zebrafish embryo	Scientific Reports	2015	5	8571
ZDB-PUB-150301-7	25724646	Li, J., Yue, Y., Dong, X., Jia, W., Li, K., Liang, D., Dong, Z., Wang, X., Nan, X., Zhang, Q., Zhao, Q.	Zebrafish foxc1a plays a crucial role in early somitogenesis by restricting the expression of aldh1a2 directly	The Journal of biological chemistry	2015	290(16)	10216-28
ZDB-PUB-150318-3	25781211	Payumo, A.Y., Walker, W.J., McQuade, L.E., Yamazoe, S., Chen, J.K.	Optochemical Dissection of T-box Gene-Dependent Medial Floor Plate Development	ACS Chemical Biology	2015	10(6)	1466-75
ZDB-PUB-150404-1	25840431	Manchenkov, T., Pasillas, M.P., Haddad, G.G., Imam, F.B.	Novel Genes Critical for Hypoxic Preconditioning in Zebrafish Are Regulators of Insulin and Glucose Metabolism	G3 (Bethesda)	2015	5(6)	1107-16
ZDB-PUB-150414-1	25867923	Satija, R., Farrell, J.A., Gennert, D., Schier, A.F., Regev, A.	Spatial reconstruction of single-cell gene expression data	Nat. Biotechnol.	2015	33(5)	495-502
ZDB-PUB-150415-7	25869585	Dubrulle, J., Jordan, B.M., Akhmetova, L., Farrell, J.A., Kim, S.H., Solnica-Krezel, L., Schier, A.F.	Response to Nodal morphogen gradient is determined by the kinetics of target gene induction	eLIFE	2015	4	
ZDB-PUB-150429-15	25912688	Moreno-Ayala, R., Schnabel, D., Salas-Vidal, E., Lomelí, H.	PIAS-like protein Zimp7 is required for the restriction of the Zebrafish organizer and mesoderm development	Developmental Biology	2015	403(1)	89-100
ZDB-PUB-150529-7	26017639	Helker, C.S., Schuermann, A., Pollmann, C., Chng, S.C., Kiefer, F., Reversade, B., Herzog, W.	The hormonal peptide Elabela guides angioblasts to the midline during vasculogenesis	eLIFE	2015	4	
ZDB-PUB-150530-3	26023327	Griepenburg, J.C., Rapp, T.L., Carroll, P.J., Eberwine, J., Dmochowski, I.J.	Ruthenium-Caged Antisense Morpholinos for Regulating Gene Expression in Zebrafish Embryos	Chemical science	2015	6	2342-2346
ZDB-PUB-150609-2	26053337	Wang, Y., Zhang, Y., Li, X., Sun, M., Wei, Z., Wang, Y., Gao, A., Chen, D., Zhao, X., Feng, X.	Exploring the Effects of Different Types of Surfactants on Zebrafish Embryos and Larvae	Scientific Reports	2015	5	10107
ZDB-PUB-150610-3	26056731	Wang, C., Chen, X., Shi, W., Wang, F., Du, Z., Li, X., Yao, Y., Liu, T., Shao, T., Li, G., Hao, A.	2-bromopalmitate impairs neural stem/progenitor cell proliferation, promotes cell apoptosis and induces malformation in zebrafish embryonic brain	Neurotoxicology and teratology	2015	50	53-63
ZDB-PUB-150626-1	26110841	Toruń, A., Szymańska, E., Castanon, I., Wolińska-Nizioł, L., Bartosik, A., Jastrzębski, K., Miętkowska, M., González-Gaitán, M., Miaczynska, M.	Endocytic Adaptor Protein Tollip Inhibits Canonical Wnt Signaling	PLoS One	2015	10	e0130818
ZDB-PUB-150711-1	26160902	Li-Villarreal, N., Forbes, M.M., Loza, A.J., Chen, J., Ma, T., Helde, K., Moens, C.B., Shin, J., Sawada, A., Hindes, A.E., Dubrulle, J., Schier, A.F., Longmore, G.D., Marlow, F.L., Solnica-Krezel, L.	Dachsous1b cadherin regulates actin and microtubule cytoskeleton during early zebrafish embryogenesis	Development (Cambridge, England)	2015	142(15)	2704-18
ZDB-PUB-150723-5	26062939	Bouldin, C.M., Manning, A.J., Peng, Y.H., Farr, G.H., Hung, K.L., Dong, A., Kimelman, D.	Wnt signaling and tbx16 form a bistable switch to commit bipotential progenitors to mesoderm	Development (Cambridge, England)	2015	142	2499-507
ZDB-PUB-150817-2	22877946	Jahangiri, L., Nelson, A.C., Wardle, F.C.	A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites	Developmental Biology	2012	371	110-120
ZDB-PUB-150820-4	26286209	Fang, X., Zhang, B., Thisse, B., Bloom, G.S., Thisse, C.	IQGAP3 Is Essential for Cell Proliferation and Motility During Zebrafish Embryonic Development	Cytoskeleton (Hoboken, N.J.)	2015	72(8)	422-33
ZDB-PUB-150826-1	26306042	Xiong, C., Liu, X., Meng, A.	The Kinase Activity-deficient Isoform of the Protein Araf Antagonizes Ras/Mitogen-activated Protein Kinase (Ras/MAPK) Signaling in the Zebrafish Embryo	The Journal of biological chemistry	2015	290(42)	25512-21
ZDB-PUB-150904-3	26335505	Asaduzzaman, M., Shakur Ahammad, A.K., Asakawa, S., Kinoshita, S., Watabe, S.	5′-flanking sequences of zebrafish fast myosin heavy chain genes regulate unique expression in the anterior, medial subsection and posterior tail somites of the skeletal muscle	Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology	2016	191	1-12
ZDB-PUB-150924-14	26390814	Hu, H., Xin, N., Liu, J., Liu, M., Wang, Z., Wang, W., Zhang, Q., Qi, J.	Characterization of F-spondin in Japanese flounder (Paralichthys olivaceus) and its role in the nervous system development of teleosts	Gene	2016	575(2 Pt 3)	623-31
ZDB-PUB-151004-4	26432885	Zhu, P., Xu, X., Lin, X.	Both ciliary and non-ciliary functions of Foxj1a confer Wnt/β-catenin signaling in zebrafish left-right patterning	Biology Open	2015	4(11)	1376-86
ZDB-PUB-151006-3	26436892	Pauli, A., Montague, T.G., Lennox, K.A., Behlke, M.A., Schier, A.F.	Antisense Oligonucleotide-Mediated Transcript Knockdown in Zebrafish	PLoS One	2015	10	e0139504
ZDB-PUB-151021-11	26483278	Muthukumarasamy, K.M., Handore, K.L., Kakade, D.N., Shinde, M.V., Ranjan, S., Kumar, N., Sehrawat, S., Sachidanandan, C., Reddy, D.S.	Identification of noreremophilane-based inhibitors of angiogenesis using zebrafish assays	Organic & biomolecular chemistry	2016	14(5)	1569-78
ZDB-PUB-151028-3	26506307	van Boxtel, A.L., Chesebro, J.E., Heliot, C., Ramel, M.C., Stone, R.K., Hill, C.S.	A Temporal Window for Signal Activation Dictates the Dimensions of a Nodal Signaling Domain	Developmental Cell	2015	35	175-185
ZDB-PUB-151218-12	26674311	Row, R.H., Tsotras, S.R., Goto, H., Martin, B.L.	The zebrafish tailbud contains two independent populations of midline progenitor cells that maintain long-term germ layer plasticity and differentiate in response to local signaling cues	Development (Cambridge, England)	2016	143(2)	244-54
ZDB-PUB-151224-2	26697342	Woods, I.G., Imam, F.B.	Transcriptome analysis of severe hypoxic stress during development in zebrafish	Genomics Data	2015	6	83-8
ZDB-PUB-151224-6	26695815	Astone, M., Pizzi, M., Peron, M., Domenichini, A., Guzzardo, V., Töchterle, S., Tiso, N., Rugge, M., Meyer, D., Argenton, F., Vettori, A.	A GFP-Tagged Gross Deletion on Chromosome 1 Causes Malignant Peripheral Nerve Sheath Tumors and Carcinomas in Zebrafish	PLoS One	2015	10	e0145178
ZDB-PUB-151225-6	26700682	Stapel, L.C., Lombardot, B., Broaddus, C., Kainmueller, D., Jug, F., Myers, E.W., Vastenhouw, N.L.	Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos	Development (Cambridge, England)	2016	143(3)	540-6
ZDB-PUB-160128-4	26814702	Gore, A.V., Athans, B., Iben, J.R., Johnson, K., Russanova, V., Castranova, D., Pham, V.N., Butler, M.G., Williams-Simons, L., Nichols, J.T., Bresciani, E., Feldman, B., Kimmel, C.B., Liu, P.P., Weinstein, B.M.	Epigenetic regulation of hematopoiesis by DNA methylation	eLIFE	2016	5	e11813
ZDB-PUB-160129-7	26820155	Guo, L., Yamashita, H., Kou, I., Takimoto, A., Meguro-Horike, M., Horike, S.I., Sakuma, T., Miura, S., Adachi, T., Yamamoto, T., Ikegawa, S., Hiraki, Y., Shukunami, C.	Functional Investigation of a Non-coding Variant Associated with Adolescent Idiopathic Scoliosis in Zebrafish: Elevated Expression of the Ladybird Homeobox Gene Causes Body Axis Deformation	PLoS Genetics	2016	12	e1005802
ZDB-PUB-160206-4	26846972	Li, L., Shi, H., Zhang, M., Guo, X., Tong, F., Zhang, W., Zhou, J., Wang, H., Yang, S.	Upregulation of metastasis-associated PRL-3 initiates chordoma in zebrafish	International Journal of Oncology	2016	48(4)	1541-52
ZDB-PUB-160218-8	26880542	Webb, A.B., Lengyel, I.M., Jörg, D.J., Valentin, G., Jülicher, F., Morelli, L.G., Oates, A.C.	Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock	eLIFE	2016	5	
ZDB-PUB-160220-5	26893345	Langdon, Y.G., Fuentes, R., Zhang, H., Abrams, E.W., Marlow, F.L., Mullins, M.C.	Split top: A maternal cathepsin B that regulates dorsoventral patterning and morphogenesis	Development (Cambridge, England)	2016	143(6)	1016-28
ZDB-PUB-160226-16	26908177	Bugel, S.M., Wehmas, L.C., La Du, J.K., Tanguay, R.L.	Phenotype anchoring in zebrafish reveals a potential role for matrix metalloproteinases (MMPs) in tamoxifen's effects on skin epithelium	Toxicology and applied pharmacology	2016	296	31-41
ZDB-PUB-160310-12	26952986	Ando, K., Fukuhara, S., Izumi, N., Nakajima, H., Fukui, H., Kelsh, R.N., Mochizuki, N.	Clarification of mural cell coverage of vascular endothelial cells by live imaging of zebrafish	Development (Cambridge, England)	2016	143(8)	1328-39
ZDB-PUB-160319-6	26990990	Mishima, Y., Tomari, Y.	Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish	Molecular Cell	2016	61	874-885
ZDB-PUB-160324-7	27004937	Fu, Q., Martin, B.L., Matus, D.Q., Gao, L.	Imaging multicellular specimens with real-time optimized tiling light-sheet selective plane illumination microscopy	Nature communications	2016	7	11088
ZDB-PUB-160324-9	27003937	Hoshijima, K., Jurynec, M.J., Grunwald, D.J.	Precise Editing of the Zebrafish Genome Made Simple and Efficient	Developmental Cell	2016	36	654-67
ZDB-PUB-160401-15	27028100	Lindy, A.S., Basehore, M.J., Munisha, M., Williams, A.L., Friez, M.J., Writzl, K., Willems, P., Dougan, S.T.	Identification of a novel insertion mutation in FGFR3 that causes thanatophoric dysplasia type 1	American journal of medical genetics. Part A	2016	170(6)	1573-9
ZDB-PUB-160411-1	27060628	McCarthy, N., Sidik, A., Bertrand, J.Y., Eberhart, J.K.	An Fgf-Shh signaling hierarchy regulates early specification of the zebrafish skull	Developmental Biology	2016	415(2)	261-77
ZDB-PUB-160415-6	27077952	Deshwar, A.R., Chng, S.C., Ho, L., Reversade, B., Scott, I.C.	The Apelin receptor enhances Nodal/TGFβ signaling to ensure proper cardiac development	eLIFE	2016	5	
ZDB-PUB-160422-2	27101364	Wang, Y., Wang, X., Wohland, T., Sampath, K.	Extracellular interactions and ligand degradation shape the nodal morphogen gradient	eLIFE	2016	5	e13879
ZDB-PUB-160506-1	27149148	Guarienti, M., Cardozo, S.M., Borgese, L., Lira, G.R., Depero, L.E., Bontempi, E., Presta, M.	COSMOS-rice technology abrogates the biotoxic effects of municipal solid waste incinerator residues	Environmental pollution (Barking, Essex : 1987)	2016	214	713-721
ZDB-PUB-160506-10	27145952	San, B., Chrispijn, N.D., Wittkopp, N., van Heeringen, S.J., Lagendijk, A.K., Aben, M., Bakkers, J., Ketting, R.F., Kamminga, L.M.	Normal formation of a vertebrate body plan and loss of tissue maintenance in the absence of ezh2	Scientific Reports	2016	6	24658
ZDB-PUB-160507-3	27153483	Kimelman, D.	A novel cold-sensitive mutant of ntla reveals temporal roles of Brachyury in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2016	245(8)	874-80
ZDB-PUB-160529-4	27235108	Du, Z., Chen, X., Li, X., He, K., Ji, S., Shi, W., Hao, A.	Protein palmitoylation activate zygotic gene expression during the maternal-to-zygotic transition	Biochemical and Biophysical Research Communications	2016	475(2)	194-201
ZDB-PUB-160619-4	27317804	Khuansuwan, S., Clanton, J.A., Dean, B.J., Patton, J.G., Gamse, J.T.	A transcription factor network controls cell migration and fate decisions in the developing zebrafish pineal complex	Development (Cambridge, England)	2016	143(14)	2641-50
ZDB-PUB-160625-3	27340786	Cui, B., Ren, L., Xu, Q.H., Yin, L.Y., Zhou, X.Y., Liu, J.X.	Silver_ nanoparticles inhibited erythrogenesis during zebrafish embryogenesis	Aquatic toxicology (Amsterdam, Netherlands)	2016	177	295-305
ZDB-PUB-160706-5	27376691	Payumo, A.Y., McQuade, L.E., Walker, W.J., Yamazoe, S., Chen, J.K.	Tbx16 regulates hox gene activation in mesodermal progenitor cells	Nature Chemical Biology	2016	12(9)	694-701
ZDB-PUB-160712-6	27396324	Sako, K., Pradhan, S.J., Barone, V., Inglés-Prieto, Á., Müller, P., Ruprecht, V., Čapek, D., Galande, S., Janovjak, H., Heisenberg, C.P.	Optogenetic Control of Nodal Signaling Reveals a Temporal Pattern of Nodal Signaling Regulating Cell Fate Specification during Gastrulation	Cell Reports	2016	16(3)	866-77
ZDB-PUB-160715-7	27406002	Naylor, R.W., Skvarca, L.B., Thisse, C., Thisse, B., Hukriede, N.A., Davidson, A.J.	BMP and retinoic acid regulate anterior-posterior patterning of the non-axial mesoderm across the dorsal-ventral axis	Nature communications	2016	7	12197
ZDB-PUB-160726-2	24553125	Fontenille, L., Rouquier, S., Lutfalla, G., Giorgi, D.	Microtubule-associated protein 9 (Map9/Asap) is required for the early steps of zebrafish development	Cell cycle (Georgetown, Tex.)	2014	13(7)	1101-14
ZDB-PUB-160805-3	27489304	Zampedri, C., Tinoco-Cuellar, M., Carrillo-Rosas, S., Diaz-Tellez, A., Ramos-Balderas, J.L., Pelegri, F., Maldonado, E.	Zebrafish P54 RNA helicases are cytoplasmic granule residents that are required for development and stress resilience	Biology Open	2016	5(10)	1473-1484
ZDB-PUB-160823-6	27545838	Liu, Z., Ning, G., Xu, R., Cao, Y., Meng, A., Wang, Q.	Fscn1 is required for the trafficking of TGF-β family type I receptors during endoderm formation	Nature communications	2016	7	12603
ZDB-PUB-160830-8	27569061	Xiao, Y., Gao, M., Gao, L., Zhao, Y., Hong, Q., Li, Z., Yao, J., Cheng, H., Zhou, R.	Directed Differentiation of Zebrafish Pluripotent Embryonic Cells to Functional Cardiomyocytes	Stem Cell Reports	2016	7(3)	370-82
ZDB-PUB-160912-3	27614751	Zhou, Z., Peng, X., Chen, J., Wu, X., Wang, Y., Hong, Y.	Identification of zebrafish magnetoreceptor and cryptochrome homologs	Science China. Life sciences	2016	59(12)	1324-1331
ZDB-PUB-160915-6	27625020	Bhadra, J., Pattanayak, S., Khan, P.P., Kundu, J., Sinha, S.	Internal Oligoguanidinium-based Cellular Transporter Enhances Antisense Efficacy of Morpholinos in in vitro and Zebrafish model	Bioconjugate Chemistry	2016	27(10)	2254-2259
ZDB-PUB-160930-4	27684073	Perez-Camps, M., Tian, J., Chng, S.C., Sem, K.P., Sudhaharan, T., Teh, C., Wachsmuth, M., Korzh, V., Ahmed, S., Reversade, B.	Quantitative imaging reveals real-time Pou5f3-Nanog complexes driving dorsoventral mesendoderm patterning in zebrafish	eLIFE	2016	5	
ZDB-PUB-161103-8	26322839	Moreno-Mateos, M.A., Vejnar, C.E., Beaudoin, J.D., Fernandez, J.P., Mis, E.K., Khokha, M.K., Giraldez, A.J.	CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo	Nature Methods	2015	12	982-8
ZDB-PUB-161110-20	27821532	Burdine, R.D., Grimes, D.T.	Antagonistic interactions in the zebrafish midline prior to the emergence of asymmetric gene expression are important for left-right patterning	Philosophical transactions of the Royal Society of London. Series B, Biological sciences	2016	371(1710)	
ZDB-PUB-161113-14	27834346	Qi, J., Dong, Z., Shi, Y., Wang, X., Qin, Y., Wang, Y., Liu, D.	NgAgo-based fabp11a gene knockdown causes eye developmental defects in zebrafish	Cell Research	2016	26(12)	1349-1352
ZDB-PUB-161125-1	27883058	Frisca, F., Colquhoun, D., Goldshmit, Y., Änkö, M.L., Pébay, A., Kaslin, J.	Role of ectonucleotide pyrophosphatase/phosphodiesterase 2 in the midline axis formation of zebrafish	Scientific Reports	2016	6	37678
ZDB-PUB-161129-5	27892483	Khatri, D., Zizioli, D., Tiso, N., Facchinello, N., Vezzoli, S., Gianoncelli, A., Memo, M., Monti, E., Borsani, G., Finazzi, D.	Down-regulation of coasy, the gene associated with NBIA-VI, reduces Bmp signaling, perturbs dorso-ventral patterning and alters neuronal development in zebrafish	Scientific Reports	2016	6	37660
ZDB-PUB-161204-10	27910850	Wei, S., Dai, M., Liu, Z., Ma, Y., Shang, H., Cao, Y., Wang, Q.	The guanine nucleotide exchange factor Net1 facilitates the specification of dorsal cell fates in zebrafish embryos by promoting maternal β-catenin activation	Cell Research	2017	27(2)	202-225
ZDB-PUB-170214-118	26358189	Zhang, P., He, Q., Chen, D., Liu, W., Wang, L., Zhang, C., Ma, D., Li, W., Liu, B., Liu, F.	G protein-coupled receptor 183 facilitates endothelial-to-hematopoietic transition via Notch1 inhibition	Cell Research	2015	25	1093-107
ZDB-PUB-170214-147	26186943	Zhang, W.W., Zhang, Y.B., Zhao, X.X., Hua, Y., Wu, Z.L., Yan, Y.C., Li, Y.P.	Prmt7 regulates epiboly by facilitating 2-OST and modulating actin cytoskeleton	Journal of molecular cell biology	2015	7	489-91
ZDB-PUB-170214-207	25739401	Kurian, L., Aguirre, A., Sancho-Martinez, I., Benner, C., Hishida, T., Nguyen, T.B., Reddy, P., Nivet, E., Krause, M.N., Nelles, D.A., Rodriguez Esteban, C., Campistol, J.M., Yeo, G.W., Izpisua Belmonte, J.C.	Identification of novel long noncoding RNAs underlying vertebrate cardiovascular development	Circulation	2015	131	1278-90
ZDB-PUB-170222-3	28222105	Liu, Y., Sepich, D.S., Solnica-Krezel, L.	Stat3/Cdc25a-dependent cell proliferation promotes embryonic axis extension during zebrafish gastrulation	PLoS Genetics	2017	13	e1006564
ZDB-PUB-170223-1	28225561	Morris, E.A., Bodin, S., Delaval, B., Comunale, F., Georget, V., Costa, M.L., Lutfalla, G., Gauthier-Rouvière, C.	Flotillins control zebrafish epiboly through their role in cadherin-mediated cell-cell adhesion	Biology of the cell	2017	109(5)	210-221
ZDB-PUB-170301-7	28242612	Goto, H., Kimmey, S.C., Row, R.H., Matus, D.Q., Martin, B.L.	FGF and canonical Wnt signaling cooperate to induce paraxial mesoderm from tailbud neuromesodermal progenitors through regulation of a two-step EMT	Development (Cambridge, England)	2017	144(8)	1412-1424
ZDB-PUB-170328-2	28346437	Smutny, M., Ákos, Z., Grigolon, S., Shamipour, S., Ruprecht, V., Čapek, D., Behrndt, M., Papusheva, E., Tada, M., Hof, B., Vicsek, T., Salbreux, G., Heisenberg, C.P.	Friction forces position the neural anlage	Nature cell biology	2017	19(4)	306-317
ZDB-PUB-170402-6	28363787	Li, X., Zhang, Y., Li, X., Feng, D., Zhang, S., Zhao, X., Chen, D., Zhang, Z., Feng, X.	Comparative analysis of biological effect of corannulene and graphene on developmental and sleep/wake profile of zebrafish larvae	Acta biomaterialia	2017	55	271-282
ZDB-PUB-170428-3	28448908	Zhang, S., Xu, J., Kuang, X., Li, S., Li, X., Chen, D., Zhao, X., Feng, X.	Biological impacts of glyphosate on morphology, embryo biomechanics and larval behavior in zebrafish (Danio rerio)	Chemosphere	2017	181	270-280
ZDB-PUB-170504-14	28463110	Gong, B., Shen, W., Xiao, W., Meng, Y., Meng, A., Jia, S.	The Sec14-like phosphatidylinositol transfer proteins Sec14l3/SEC14L2 act as GTPase proteins to mediate Wnt/Ca<sup>2+</sup> signaling.	eLIFE	2017	6	
ZDB-PUB-170602-11	28223363	Qi, J., Lee, H.J., Saquet, A., Cheng, X.N., Shao, M., Zheng, J.J., Shi, D.L.	Autoinhibition of Dishevelled protein regulated by its extreme C terminus plays a distinct role in Wnt/β-catenin and Wnt/planar cell polarity (PCP) signaling pathways	The Journal of biological chemistry	2017	292	5898-5908
ZDB-PUB-170614-5	28606834	Li, S.Z., Liu, W., Li, Z., Li, W.H., Wang, Y., Zhou, L., Gui, J.F.	greb1 regulates convergent extension movement and pituitary development in zebrafish	Gene	2017	627	176-187
ZDB-PUB-170624-7	28642734	Yokokura, T., Kamei, H., Shibano, T., Yamanaka, D., Sawada-Yamaguchi, R., Hakuno, F., Takahashi, S.I., Shimizu, T.	The Short-Stature Homeobox-Containing Gene (<i>shox</i>/<i>SHOX</i>) Is Required for the Regulation of Cell Proliferation and Bone Differentiation in Zebrafish Embryo and Human Mesenchymal Stem Cells.	Frontiers in endocrinology	2017	8	125
ZDB-PUB-170629-1	28658625	Nelson, A.C., Cutty, S.J., Gasiunas, S.N., Deplae, I., Stemple, D.L., Wardle, F.C.	In Vivo Regulation of the Zebrafish Endoderm Progenitor Niche by T-Box Transcription Factors	Cell Reports	2017	19	2782-2795
ZDB-PUB-170629-5	28657738	Liu, J., Hemphill, J., Samanta, S., Tsang, M., Deiters, A.	Genetic Code Expansion in Zebrafish Embryos and Its Application to Optical Control of Cell Signaling	Journal of the American Chemical Society	2017	139(27)	9100-9103
ZDB-PUB-170709-3	28687631	Bian, S.S., Zheng, X.L., Sun, H.Q., Chen, J.H., Lu, Y.L., Liu, Y.Q., Tao, D.C., Ma, Y.X.	Clock1a affects mesoderm development and primitive hematopoiesis by regulating Nodal-Smad3 signalings in the zebrafish embryo	The Journal of biological chemistry	2017	292(34)	14165-14175
ZDB-PUB-170712-14	28691257	Morrow, Z.T., Maxwell, A.M., Hoshijima, K., Talbot, J.C., Grunwald, D.J., Amacher, S.L.	tbx6l and tbx16 are redundantly required for posterior paraxial mesoderm formation during zebrafish embryogenesis	Developmental Dynamics : an official publication of the American Association of Anatomists	2017	246(10)	759-769
ZDB-PUB-170720-15	28716076	Lin, C.Y., Tsai, M.Y., Liu, Y.H., Lu, Y.F., Chen, Y.C., Lai, Y.R., Liao, H.C., Lien, H.W., Yang, C.H., Huang, C.J., Hwang, S.L.	Klf8 regulates left-right asymmetric patterning through modulation of Kupffer's vesicle morphogenesis and spaw expression	Journal of Biomedical Science	2017	24	45
ZDB-PUB-170726-11	28740134	Zhang, Y., Qin, W., Lu, X., Xu, J., Huang, H., Bai, H., Li, S., Lin, S.	Programmable base editing of zebrafish genome using a modified CRISPR-Cas9 system	Nature communications	2017	8	118
ZDB-PUB-170726-19	28736167	West, J.J., Zulueta-Coarasa, T., Maier, J.A., Lee, D.M., Bruce, A.E.E., Fernandez-Gonzalez, R., Harris, T.J.C.	An Actomyosin-Arf-GEF Negative Feedback Loop for Tissue Elongation under Stress	Current biology : CB	2017	27(15)	2260-2270.e5
ZDB-PUB-170806-6	28778986	Wei, S., Ning, G., Li, L., Yan, Y., Yang, S., Cao, Y., Wang, Q.	A GEF activity-independent function for nuclear Net1 in Nodal/Smad2 signal transduction and mesendoderm formation	Journal of Cell Science	2017	130(18)	3072-3082
ZDB-PUB-170817-11	28808254	Shen, H., Shin, E.M., Lee, S., Mathavan, S., Koh, H., Osato, M., Choi, H., Tergaonkar, V., Korzh, V.	Ikk2 regulates cytokinesis during vertebrate development	Scientific Reports	2017	7	8094
ZDB-PUB-170909-7	28882847	Wang, L., Liu, Z., Lin, H., Ma, D., Tao, Q., Liu, F.	Epigenetic regulation of left-right asymmetry by DNA methylation	The EMBO journal	2017	36(20)	2987-2997
ZDB-PUB-170910-4	28887217	Liu, J.X., Xu, Q.H., Li, S., Yu, X., Liu, W., Ouyang, G., Zhang, T., Chen, L.L.	Transcriptional factors Eaf1/2 inhibit endoderm and mesoderm formation via suppressing TGF-β signaling	Biochimica et biophysica acta	2017	1860(10)	1103-1116
ZDB-PUB-170920-7	28924386	Sun, Q., Liu, X., Gong, B., Wu, D., Meng, A., Jia, S.	Alkbh4 and Atrn Act Maternally to Regulate Zebrafish Epiboly	International journal of biological sciences	2017	13	1051-1066
ZDB-PUB-170921-8	28928283	Shao, M., Wang, M., Liu, Y.Y., Ge, Y.W., Zhang, Y.J., Shi, D.L.	Vegetally localised Vrtn functions as a novel repressor to modulate <i>bmp2b</i> transcription during dorsoventral patterning in zebrafish.	Development (Cambridge, England)	2017	144	3361-3374
ZDB-PUB-170922-2	28934690	Roy, N.M., Zambrzycka, E., Santangelo, J.	Butyl benzyl phthalate (BBP) induces caudal defects during embryonic development	Environmental Toxicology and Pharmacology	2017	56	129-135
ZDB-PUB-170928-16	28947537	Hozumi, S., Aoki, S., Kikuchi, Y.	Nuclear movement regulated by non-Smad Nodal signaling via JNK is associated with Smad signaling during zebrafish endoderm specification	Development (Cambridge, England)	2017	144(21)	4015-4025
ZDB-PUB-171104-2	29099280	Madakashira, B., Corbett, L., Zhang, C., Paoli, P., Casement, J.W., Mann, J., Sadler, K.C., Mann, D.A.	Variant Histone H2afv Reprograms DNA Methylation During Early Zebrafish Development	Epigenetics	2017	12(9)	811-824
ZDB-PUB-171109-4	29116181	Cheng, X.N., Shao, M., Li, J.T., Wang, Y.F., Qi, J., Xu, Z.G., Shi, D.L.	Leucine repeat adaptor protein 1 interacts with Dishevelled to regulate gastrulation cell movements in zebrafish	Nature communications	2017	8	1353
ZDB-PUB-171110-5	29117894	Norris, M.L., Pauli, A., Gagnon, J.A., Lord, N.D., Rogers, K.W., Mosimann, C., Zon, L.I., Schier, A.F.	Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling	eLIFE	2017	6	
ZDB-PUB-171117-6	29140249	Bisgrove, B.W., Su, Y.C., Yost, H.J.	Maternal Gdf3 is an obligatory cofactor in nodal signaling for embryonic axis formation in zebrafish	eLIFE	2017	6	
ZDB-PUB-171117-7	29140250	Pelliccia, J.L., Jindal, G.A., Burdine, R.D.	Gdf3 is required for robust Nodal signaling during germ layer formation and left-right patterning	eLIFE	2017	6	
ZDB-PUB-171117-8	29140251	Montague, T.G., Schier, A.F.	Vg1-Nodal heterodimers are the endogenous inducers of mesendoderm	eLIFE	2017	6	
ZDB-PUB-171123-5	29162723	Yue, Y., Jiang, M., He, L., Zhang, Z., Zhang, Q., Gu, C., Liu, M., Li, N., Zhao, Q.	The transcription factor Foxc1a in zebrafish directly regulates expression of <i>nkx2.5</i>, encoding a transcriptional regulator of cardiac progenitor cells.	The Journal of biological chemistry	2017	293(2)	638-650
ZDB-PUB-171204-53	28076796	Zhang, Y., O'Leary, M.N., Peri, S., Wang, M., Zha, J., Melov, S., Kappes, D.J., Feng, Q., Rhodes, J., Amieux, P.S., Morris, D.R., Kennedy, B.K., Wiest, D.L.	Ribosomal Proteins Rpl22 and Rpl22l1 Control Morphogenesis by Regulating Pre-mRNA Splicing	Cell Reports	2017	18	545-556
ZDB-PUB-171204-8	29180568	Veil, M., Schaechtle, M.A., Gao, M., Kirner, V., Buryanova, L., Grethen, R., Onichtchouk, D.	Maternal Nanog is critical for the zebrafish embryo architecture and for cell viability during gastrulation	Development (Cambridge, England)	2017	145(1)	
ZDB-PUB-171208-5	29215332	Rogers, K.W., Lord, N.D., Gagnon, J.A., Pauli, A., Zimmerman, S., Aksel, D.C., Reyon, D., Tsai, S.Q., Joung, J.K., Schier, A.F.	Nodal patterning without Lefty inhibitory feedback is functional but fragile	eLIFE	2017	6	
ZDB-PUB-171210-8	29222508	Moreno-Mateos, M.A., Fernandez, J.P., Rouet, R., Vejnar, C.E., Lane, M.A., Mis, E., Khokha, M.K., Doudna, J.A., Giraldez, A.J.	CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing	Nature communications	2017	8	2024
ZDB-PUB-171226-1	29275993	van Boxtel, A.L., Economou, A.D., Heliot, C., Hill, C.S.	Long-Range Signaling Activation and Local Inhibition Separate the Mesoderm and Endoderm Lineages	Developmental Cell	2017	44(2)	179-191.e5
ZDB-PUB-180101-3	29289755	Wang, Z., Nakayama, Y., Tsuda, S., Yamasu, K.	The role of gastrulation brain homeobox 2 (gbx2) in the development of the ventral telencephalon in zebrafish embryos	Differentiation; research in biological diversity	2018	99	28-40
ZDB-PUB-180126-3	29366809	Kobayashi, K., Khan, A., Ikeda, M., Nakamoto, A., Maekawa, M., Yamasu, K.	In vitro analysis of the transcriptional regulatory mechanism of zebrafish pou5f3	Experimental cell research	2018	364(1)	28-41
ZDB-PUB-180202-7	29390112	Kamei, H., Yoneyama, Y., Hakuno, F., Sawada, R., Shimizu, T., Duan, C., Takahashi, S.I.	Catch-up growth in zebrafish embryo requires neural crest cells sustained by Irs1-signaling	Endocrinology	2018	159(4)	1547-1560
ZDB-PUB-180211-6	29427810	Liu, X., Zhang, Q., Li, S., Mi, P., Chen, D., Zhao, X., Feng, X.	Developmental toxicity and neurotoxicity of synthetic organic insecticides in zebrafish (Danio rerio): A comparative study of deltamethrin, acephate, and thiamethoxam	Chemosphere	2018	199	16-25
ZDB-PUB-180223-2	29440298	Vopalensky, P., Pralow, S., Vastenhouw, N.L.	Reduced expression of the Nodal coreceptor Oep causes loss of mesendodermal competence in zebrafish	Development (Cambridge, England)	2018	145(5)	
ZDB-PUB-180308-6	29514088	Mönnich, M., Borgeskov, L., Breslin, L., Jakobsen, L., Rogowski, M., Doganli, C., Schrøder, J.M., Mogensen, J.B., Blinkenkjær, L., Harder, L.M., Lundberg, E., Geimer, S., Christensen, S.T., Andersen, J.S., Larsen, L.A., Pedersen, L.B.	CEP128 Localizes to the Subdistal Appendages of the Mother Centriole and Regulates TGF-β/BMP Signaling at the Primary Cilium	Cell Reports	2018	22	2584-2592
ZDB-PUB-180310-1	29518972	Dancevic, C.M., Gibert, Y., Berger, J., Smith, A.D., Liongue, C., Stupka, N., Ward, A.C., McCulloch, D.R.	The ADAMTS5 Metzincin Regulates Zebrafish Somite Differentiation	International Journal of Molecular Sciences	2018	19(3)	
ZDB-PUB-180330-11	29311262	Trivedi, V., Choi, H.M.T., Fraser, S.E., Pierce, N.A.	Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos	Development (Cambridge, England)	2018	145(1)	
ZDB-PUB-180405-9	29615614	Williams, M.L.K., Sawada, A., Budine, T., Yin, C., Gontarz, P., Solnica-Krezel, L.	Gon4l regulates notochord boundary formation and cell polarity underlying axis extension by repressing adhesion genes	Nature communications	2018	9	1319
ZDB-PUB-180428-1	29700225	Farrell, J.A., Wang, Y., Riesenfeld, S.J., Shekhar, K., Regev, A., Schier, A.F.	Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis	Science (New York, N.Y.)	2018	360(6392)	
ZDB-PUB-180428-3	29700229	Wagner, D.E., Weinreb, C., Collins, Z.M., Briggs, J.A., Megason, S.G., Klein, A.M.	Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo	Science (New York, N.Y.)	2018	360(6392)	981-987
ZDB-PUB-180609-11	29877796	Row, R.H., Pegg, A., Kinney, B., Farr, G.H., Maves, L., Lowell, S., Wilson, V., Martin, B.L.	BMP and FGF signaling interact to pattern mesoderm by controlling basic helix-loop-helix transcription factor activity	eLIFE	2018	7	
ZDB-PUB-180628-2	29945867	Schredelseker, T., Driever, W.	Bsx controls pineal complex development	Development (Cambridge, England)	2018	145(13)	
ZDB-PUB-180704-2	29966290	Niu, J., Guan, J., Li, R., Li, X., Zhai, J., Qi, J., He, Y.	<i>Cynoglossus semilaevis Rspo3</i> Regulates Embryo Development by Inhibiting the Wnt/&#x3b2;-Catenin Signaling Pathway.	International Journal of Molecular Sciences	2018	19(7)	
ZDB-PUB-180711-2	29988067	Jin, Y.N., Schlueter, P.J., Jurisch-Yaksi, N., Lam, P.Y., Jin, S., Hwang, W.Y., Yeh, J.J., Yoshigi, M., Ong, S.E., Schenone, M., Hartigan, C.R., Carr, S.A., Peterson, R.T.	Noncanonical translation via deadenylated 3' UTRs maintains primordial germ cells	Nature Chemical Biology	2018	14(9)	844-852
ZDB-PUB-180713-14	29997348	Saydmohammed, M., Vollmer, L.L., Onuoha, E.O., Maskrey, T.S., Gibson, G., Watkins, S.C., Wipf, P., Vogt, A., Tsang, M.	A High-Content Screen Reveals New Small-Molecule Enhancers of Ras/Mapk Signaling as Probes for Zebrafish Heart Development	Molecules	2018	23(7)	
ZDB-PUB-180718-11	30016568	Warga, R.M., Kane, D.A.	A Wilson cell origin for Kupffer's vesicle in the zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	2018	247(9)	1057-1069
ZDB-PUB-180731-15	30060229	Wu, X., Shen, W., Zhang, B., Meng, A.	The genetic program of oocytes can be modified in vivo in the zebrafish ovary	Journal of molecular cell biology	2018	10(6)	479-493
ZDB-PUB-180801-1	30060804	Mattes, B., Dang, Y., Greicius, G., Kaufmann, L.T., Prunsche, B., Rosenbauer, J., Stegmaier, J., Mikut, R., Özbek, S., Nienhaus, G.U., Schug, A., Virshup, D.M., Scholpp, S.	Wnt/PCP controls spreading of Wnt/β-catenin signals by cytonemes in vertebrates	eLIFE	2018	7	
ZDB-PUB-180802-10	30067987	Guner-Ataman, B., González-Rosa, J.M., Shah, H.N., Butty, V.L., Jeffrey, S., Abrial, M., Boyer, L.A., Burns, C.G., Burns, C.E.	Failed Progenitor Specification Underlies the Cardiopharyngeal Phenotypes in a Zebrafish Model of 22q11.2 Deletion Syndrome	Cell Reports	2018	24	1342-1354.e5
ZDB-PUB-180807-5	30080849	Xing, Y.Y., Cheng, X.N., Li, Y.L., Zhang, C., Saquet, A., Liu, Y.Y., Shao, M., Shi, D.L.	Mutational analysis of dishevelled genes in zebrafish reveals distinct functions in embryonic patterning and gastrulation cell movements	PLoS Genetics	2018	14	e1007551
ZDB-PUB-180817-7	30114527	Zhang, Z., Qin, Z.	Characterization of Midkine in tongue sole (Cynoglossus semilaevis)and its role on the germ layer genesis in zebrafish (Danio rerio)	Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology	2018	226	64-72
ZDB-PUB-180825-4	30139971	Saydmohammed, M., Yagi, H., Calderon, M., Clark, M.J., Feinstein, T., Sun, M., Stolz, D.B., Watkins, S.C., Amack, J.D., Lo, C.W., Tsang, M.	Vertebrate myosin&#xa0;1d regulates left-right organizer morphogenesis and laterality	Nature communications	2018	9	3381
ZDB-PUB-180913-27	30208061	Ata, H., Ekstrom, T.L., Martínez-Gálvez, G., Mann, C.M., Dvornikov, A.V., Schaefbauer, K.J., Ma, A.C., Dobbs, D., Clark, K.J., Ekker, S.C.	Robust Activation of Microhomology-mediated End Joining for Precision Gene Editing Applications	PLoS Genetics	2018	14	e1007652
ZDB-PUB-181005-3	30282743	Roussigné, M., Wei, L., Tsingos, E., Kuchling, F., Alkobtawi, M., Tsalavouta, M., Wittbrodt, J., Carl, M., Blader, P., Wilson, S.W.	Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells	Proceedings of the National Academy of Sciences of the United States of America	2018	115(42)	E9812-E9821
ZDB-PUB-181020-23	30337622	Castillo-Robles, J., Ramírez, L., Spaink, H.P., Lomelí, H.	smarce1 mutants have a defective endocardium and an increased expression of cardiac transcription factors in zebrafish	Scientific Reports	2018	8	15369
ZDB-PUB-181020-4	30333213	Attardi, A., Fulton, T., Florescu, M., Shah, G., Muresan, L., Lenz, M.O., Lancaster, C., Huisken, J., van Oudenaarden, A., Steventon, B.	Neuromesodermal progenitors are a conserved source of spinal cord with divergent growth dynamics	Development (Cambridge, England)	2018	145(21)	
ZDB-PUB-181027-3	30361324	Warga, R.M., Kane, D.A.	Probing Cadherin Interactions in Zebrafish with E- and N-Cadherin Missense Mutants	Genetics	2018	210(4)	1391-1409
ZDB-PUB-181127-30	30459392	Huang, C.X., Huang, Y., Duan, X.K., Zhang, M., Tu, J.P., Liu, J.X., Liu, H., Chen, T.S., Wang, W.M., Wang, H.L.	Zebrafish miR-462-731 regulates hematopoietic specification and pu.1-dependent primitive myelopoiesis	Cell death and differentiation	2018	26(8)	1531-1544
ZDB-PUB-181127-52	30467143	Yan, L., Chen, J., Zhu, X., Sun, J., Wu, X., Shen, W., Zhang, W., Tao, Q., Meng, A.	Maternal Huluwa dictates the embryonic body axis through &#x3b2;-catenin in vertebrates	Science (New York, N.Y.)	2018	362(6417)	
ZDB-PUB-181127-92	30460056	Yoo, K.W., Maddirevula, S., Kumar, A., Ro, H., Huh, T.L., Rhee, M.	Sinup is essential for the integrity of centrosomes and mitotic spindles in zebrafish embryos	Animal cells and systems	2017	21	93-99
ZDB-PUB-190102-1	30597912	Wong, K.L., Akiyama, R., Bessho, Y., Matsui, T.	ERK Activity Dynamics during Zebrafish Embryonic Development	International Journal of Molecular Sciences	2018	20(1)	
ZDB-PUB-190117-5	30648973	Čapek, D., Smutny, M., Tichy, A.M., Morri, M., Janovjak, H., Heisenberg, C.P.	Light-activated Frizzled7 reveals a permissive role of non-canonical Wnt signaling in mesendoderm cell migration	eLIFE	2019	8	
ZDB-PUB-190223-15	29648648	Bellesso, S., Salvalaio, M., Lualdi, S., Tognon, E., Costa, R., Braghetta, P., Giraudo, C., Stramare, R., Rigon, L., Filocamo, M., Tomanin, R., Moro, E.	FGF signaling deregulation is associated with early developmental skeletal defects in animal models for mucopolysaccharidosis type II (MPSII)	Human molecular genetics	2018	27	2262-2275
ZDB-PUB-190308-4	30837221	Ghersi, J.J., Mahony, C.B., Bertrand, J.Y.	<i>bif1</i>, a new BMP signaling inhibitor, regulates embryonic hematopoiesis in the zebrafish	Development (Cambridge, England)	2019	146(6)	
ZDB-PUB-190412-9	30974150	Thiessen, K.D., Grzegorski, S.J., Chin, Y., Higuchi, L., Wilkinson, C.J., Shavit, J.A., Kramer, K.L.	Zebrafish otolith biomineralization requires polyketide synthase	Mechanisms of Development	2019	157	1-9
ZDB-PUB-190423-2	31006648	Lin, X., Zhou, Q., Zhao, C., Lin, G., Xu, J., Wen, Z.	An Ectoderm-Derived Myeloid-like Cell Population Functions as Antigen Transporters for Langerhans Cells in Zebrafish Epidermis	Developmental Cell	2019	49(4)	605-617.e5
ZDB-PUB-190512-8	31077712	Cheng, X.N., Shao, M., Shi, D.L.	Collagen triple helix repeat containing 1a (Cthrc1a) regulates cell adhesion and migration during gastrulation in zebrafish	Experimental cell research	2019	381(1)	112-120
ZDB-PUB-190609-4	31175226	Leerberg, D.M., Hopton, R.E., Draper, B.W.	Fibroblast Growth Factor Receptors Function Redundantly During Zebrafish Embryonic Development	Genetics	2019	212(4)	1301-1319
ZDB-PUB-190622-1	31221659	D'Agati, G., Cabello, E.M., Frontzek, K., Rushing, E.J., Klemm, R., Robinson, M.D., White, R.M., Mosimann, C., Burger, A.	Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish	Disease models & mechanisms	2019	12(7)	
ZDB-PUB-190724-30	31330852	Chen, W., Bian, C., You, X., Li, J., Ye, L., Wen, Z., Lv, Y., Zhang, X., Xu, J., Yang, S., Gu, R., Lin, X., Shi, Q.	Genome Sequencing of the Japanese Eel (<i>Anguilla japonica</i>) for Comparative Genomic Studies on <i>tbx4</i> and a <i>tbx4</i> Gene Cluster in Teleost Fishes	Marine drugs	2019	17(7)	
ZDB-PUB-190808-16	31390119	Rutherford, N.E., Wong, A.H., Bruce, A.E.E.	Spatio-temporal characterization of dynamic epithelial filopodia during zebrafish epiboly	Developmental Dynamics : an official publication of the American Association of Anatomists	2019	248(10)	997-1008
ZDB-PUB-190811-2	31398778	Rhyu, D., Lee, H., Tanguay, R.L., Kim, K.T.	Tris(1,3-dichloro-2-propyl)phosphate (TDCIPP) disrupts zebrafish tail fin development	Ecotoxicology and environmental safety	2019	182	109449
ZDB-PUB-190828-7	31451113	Lee, G.H., Chang, C.L., Chiu, W.T., Hsiao, T.H., Chen, P.Y., Wang, K.C., Kuo, C.H., Chen, B.H., Shi, G.Y., Wu, H.L., Fu, T.F.	A thrombomodulin-like gene is crucial to the collective migration of epibolic blastomeres during germ layer formation and organogenesis in zebrafish	Journal of Biomedical Science	2019	26	60
ZDB-PUB-190919-7	31527654	Liedtke, D., Orth, M., Meissler, M., Geuer, S., Knaup, S., Köblitz, I., Klopocki, E.	ECM alterations in Fndc3a (Fibronectin Domain Containing Protein 3A) deficient zebrafish cause temporal fin development and regeneration defects	Scientific Reports	2019	9	13383
ZDB-PUB-191124-8	31758943	Grimes, D.T., Patterson, V.L., Luna-Arvizu, G., Schottenfeld-Roames, J., Irons, Z.H., Burdine, R.D.	Left-right asymmetric heart jogging increases the robustness of dextral heart looping in zebrafish	Developmental Biology	2019	459(2)	79-86
ZDB-PUB-191128-3	31772307	Hoeksma, J., Misset, T., Wever, C., Kemmink, J., Kruijtzer, J., Versluis, K., Liskamp, R.M.J., Boons, G.J., Heck, A.J.R., Boekhout, T., den Hertog, J.	A new perspective on fungal metabolites: identification of bioactive compounds from fungi using zebrafish embryogenesis as read-out	Scientific Reports	2019	9	17546
ZDB-PUB-191130-16	31782996	Farnsworth, D.R., Saunders, L.M., Miller, A.C.	A single-cell transcriptome atlas for zebrafish development	Developmental Biology	2020	459(2)	100-108
ZDB-PUB-191206-16	31799436	Reddy, P.C., Gungi, A., Ubhe, S., Pradhan, S.J., Kolte, A., Galande, S.	Molecular signature of an ancient organizer regulated by Wnt/&#x3b2;-catenin signalling during primary body axis patterning in <i>Hydra</i>	Communications biology	2019	2	434
ZDB-PUB-200108-24	31910335	Jung, J., Choi, I., Ro, H., Huh, T.L., Choe, J., Rhee, M.	<i>march5</i> Governs the Convergence and Extension Movement for Organization of the Telencephalon and Diencephalon in Zebrafish Embryos	Molecules and cells	2020	43(1)	76-85
ZDB-PUB-200116-10	31940339	Pálfy, M., Schulze, G., Valen, E., Vastenhouw, N.L.	Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation	PLoS Genetics	2020	16	e1008546
ZDB-PUB-200129-6	31988092	Prajapati, R.S., Mitter, R., Vezzaro, A., Ish-Horowicz, D.	<i>Greb1</i> is required for axial elongation and segmentation in vertebrate embryos	Biology Open	2020	9(2)	
ZDB-PUB-200221-16	32064309	Yan, Y., Ning, G., Li, L., Liu, J., Yang, S., Cao, Y., Wang, Q.	The BMP ligand Pinhead together with Admp supports the robustness of embryonic patterning	Science advances	2019	5	eaau6455
ZDB-PUB-200226-12	32097584	Hung, I.C., Chen, T.M., Lin, J.P., Tai, Y.L., Shen, T.L., Lee, S.J.	Wnt5b integrates Fak1a to mediate gastrulation cell movements via Rac1 and Cdc42	Open Biology	2020	10	190273
ZDB-PUB-200305-4	32127575	Sarmah, S., Srivastava, R., McClintick, J.N., Janga, S.C., Edenberg, H.J., Marrs, J.A.	Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects	Scientific Reports	2020	10	3951
ZDB-PUB-200403-244	32240230	Lee, Y.H., Kawakami, K., HuangFu, W.C., Liu, I.H.	Chondroitin sulfate proteoglycan 4 regulates zebrafish body axis organization via Wnt/planar cell polarity pathway	PLoS One	2020	15	e0230943
ZDB-PUB-200422-34	32250246	Schauer, A., Pinheiro, D., Hauschild, R., Heisenberg, C.P.	Zebrafish embryonic explants undergo genetically encoded self-assembly	eLIFE	2020	9	
ZDB-PUB-200423-4	32319426	Williams, M.L.K., Solnica-Krezel, L.	Nodal and Planar Cell Polarity signaling cooperate to regulate zebrafish convergence and extension gastrulation movements	eLIFE	2020	9	
ZDB-PUB-200423-9	32320685	Vonica, A., Bhat, N., Phan, K., Guo, J., Iancu, L., Weber, J.A., Karger, A., Cain, J.W., Wang, E.C.E., DeStefano, G.M., O'Donnell-Luria, A.H., Christiano, A.M., Riley, B., Butler, S.J., Luria, V.	Apcdd1 is a dual BMP/Wnt inhibitor in the developing nervous system and skin	Developmental Biology	2020	464(1)	71-87
ZDB-PUB-200430-5	32345657	Osborn, D.P.S., Li, K., Cutty, S.J., Nelson, A.C., Wardle, F.C., Hinits, Y., Hughes, S.M.	Fgf-driven Tbx protein activities directly induce <i>myf5</i> and <i>myod</i> to initiate zebrafish myogenesis	Development (Cambridge, England)	2020	147(8)	
ZDB-PUB-200515-11	32408210	Gu, J., Wang, H., Zhou, L., Fan, D., Shi, L., Ji, G., Gu, A.	Oxidative stress in bisphenol AF-induced cardiotoxicity in zebrafish and the protective role of N-acetyl N-cysteine	The Science of the total environment	2020	731	139190
ZDB-PUB-200521-13	32434089	Li, W., Wu, Y., Yuan, M., Liu, X.	Fluxapyroxad induces developmental delay in zebrafish (Danio rerio)	Chemosphere	2020	256	127037
ZDB-PUB-200604-3	32488346	Bosze, B., Ono, Y., Mattes, B., Sinner, C., Gourain, V., Thumberger, T., Tlili, S., Wittbrodt, J., Saunders, T.E., Strähle, U., Schug, A., Scholpp, S.	Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish	Histochemistry and cell biology	2020	154(5)	463-480
ZDB-PUB-200620-23	32559447	Fulton, T., Trivedi, V., Attardi, A., Anlas, K., Dingare, C., Arias, A.M., Steventon, B.	Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis	Current biology : CB	2020	30(15)	2984-2994.e3
ZDB-PUB-200626-19	32585597	Iwanami, N., Takeshita, K., Lawir, D.F., Suetake, I., Tajima, S., Sikora, K., Trancoso, I., ÓMeara, C., Siamishi, I., Takahama, Y., Furutani-Seiki, M., Kondoh, H., Yonezawa, Y., Schorpp, M., Boehm, T.	Epigenetic Protection of Vertebrate Lymphoid Progenitor Cells by Dnmt1	iScience	2020	23	101260
ZDB-PUB-200706-2	32620775	Castanon, I., Hannich, J.T., Abrami, L., Huber, F., Dubois, M., Müller, M., van der Goot, F.G., Gonzalez-Gaitan, M.	Wnt-controlled sphingolipids modulate Anthrax Toxin Receptor palmitoylation to regulate oriented mitosis in zebrafish	Nature communications	2020	11	3317
ZDB-PUB-200719-2	32674364	Carrington, B., Weinstein, R.N., Sood, R.	BE4max and AncBE4max Are Efficient in Germline Conversion of C:G to T:A Base Pairs in Zebrafish	Cells	2020	9(7)	
ZDB-PUB-200810-31	32768421	Kushawah, G., Hernandez-Huertas, L., Abugattas-Nuñez Del Prado, J., Martinez-Morales, J.R., DeVore, M.L., Hassan, H., Moreno-Sanchez, I., Tomas-Gallardo, L., Diaz-Moscoso, A., Monges, D.E., Guelfo, J.R., Theune, W.C., Brannan, E.O., Wang, W., Corbin, T.J., Moran, A.M., Sánchez Alvarado, A., Málaga-Trillo, E., Takacs, C.M., Bazzini, A.A., Moreno-Mateos, M.A.	CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos	Developmental Cell	2020	54(6)	805-817.e7
ZDB-PUB-200905-4	32883883	Hsu, J., Huang, H.T., Lee, C.T., Choudhuri, A., Wilson, N.K., Abraham, B.J., Moignard, V., Kucinski, I., Yu, S., Hyde, R.K., Tober, J., Cai, X., Li, Y., Guo, Y., Yang, S., Superdock, M., Trompouki, E., Calero-Nieto, F.J., Ghamari, A., Jiang, J., Gao, P., Gao, L., Nguyen, V., Robertson, A.L., Durand, E.M., Kathrein, K.L., Aifantis, I., Gerber, S.A., Tong, W., Tan, K., Cantor, A.B., Zhou, Y., Liu, P.P., Young, R.A., Göttgens, B., Speck, N.A., Zon, L.I.	CHD7 and Runx1 interaction provides a braking mechanism for hematopoietic differentiation	Proceedings of the National Academy of Sciences of the United States of America	2020	117(38)	23626-23635
ZDB-PUB-201002-13	32911082	Quintanilla, C.A., Ho, R.K.	The Cdx transcription factors and retinoic acid play parallel roles in antero-posterior position of the pectoral fin field during gastrulation	Mechanisms of Development	2020	164	103644
ZDB-PUB-201002-146	32969791	Weger, M., Weger, B.D., Schink, A., Takamiya, M., Stegmaier, J., Gobet, C., Parisi, A., Kobitski, A.Y., Mertes, J., Krone, N., Strähle, U., Nienhaus, G.U., Mikut, R., Gachon, F., Gut, P., Dickmeis, T.	MondoA regulates gene expression in cholesterol biosynthesis-associated pathways required for zebrafish epiboly	eLIFE	2020	9	
ZDB-PUB-201002-177	32980012	Li, W., Yuan, M., Wu, Y., Liu, X.	Bixafen exposure induces developmental toxicity in zebrafish (Danio rerio) embryos	Environmental research	2020	189	109923
ZDB-PUB-201002-70	32934222	Tsukiyama, T., Zou, J., Kim, J., Ogamino, S., Shino, Y., Masuda, T., Merenda, A., Matsumoto, M., Fujioka, Y., Hirose, T., Terai, S., Takahashi, H., Ishitani, T., Nakayama, K.I., Ohba, Y., Koo, B.K., Hatakeyama, S.	A phospho-switch controls RNF43-mediated degradation of Wnt receptors to suppress tumorigenesis	Nature communications	2020	11	4586
ZDB-PUB-201020-34	33063835	Liu, Y., Lin, Z., Sun, H.	Cystic fibrosis transmembrane conductance regulator (CFTR) regulates embryonic organizer formation during zebrafish early embryogenesis	The International journal of developmental biology	2020	64	409-413
ZDB-PUB-201120-44	33154036	Ye, Z., Kimelman, D.	<i>hox13</i> genes are required for mesoderm formation and axis elongation during early zebrafish development	Development (Cambridge, England)	2020	147(22)	
ZDB-PUB-201208-36	33277250	Gross-Thebing, S., Truszkowski, L., Tenbrinck, D., Sánchez-Iranzo, H., Camelo, C., Westerich, K.J., Singh, A., Maier, P., Prengel, J., Lange, P., Hüwel, J., Gaede, F., Sasse, R., Vos, B.E., Betz, T., Matis, M., Prevedel, R., Luschnig, S., Diz-Muñoz, A., Burger, M., Raz, E.	Using migrating cells as probes to illuminate features in live embryonic tissues	Science advances	2020	6(49)	
ZDB-PUB-201229-42	33367974	Kesavan, G., Raible, F., Gupta, M., Machate, A., Yilmaz, D., Brand, M.	Isthmin1, a secreted signaling protein, acts downstream of diverse embryonic patterning centers in development	Cell and tissue research	2020	383(3)	987-1002
ZDB-PUB-210109-25	33416493	Kroll, F., Powell, G.T., Ghosh, M., Gestri, G., Antinucci, P., Hearn, T.J., Tunbak, H., Lim, S., Dennis, H.W., Fernandez, J.M., Whitmore, D., Dreosti, E., Wilson, S.W., Hoffman, E.J., Rihel, J.	A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes	eLIFE	2021	10	
ZDB-PUB-210109-27	33417603	Pond, A.J.R., Hwang, S., Verd, B., Steventon, B.	A deep learning approach for staging embryonic tissue isolates with small data	PLoS One	2021	16	e0244151
ZDB-PUB-210120-6	33459592	Parab, S., Quick, R.E., Matsuoka, R.L.	Endothelial cell type-specific molecular requirements for angiogenesis drive fenestrated vessel development in the brain	eLIFE	2021	10	
ZDB-PUB-210218-6	33594990	Leijten, N.M., Bakker, P., Spaink, H.P., den Hertog, J., Lemeer, S.	Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism	Molecular & cellular proteomics : MCP	2021	20	100033
ZDB-PUB-210319-8	33730596	Petridou, N.I., Corominas-Murtra, B., Heisenberg, C.P., Hannezo, E.	Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions	Cell	2021	184(7)	1914-1928.e19
ZDB-PUB-210324-8	33755014	Willoughby, P.M., Allen, M., Yu, J., Korytnikov, R., Chen, T., Liu, Y., So, I., Macpherson, N., Mitchell, J.A., Fernandez-Gonzalez, R., Bruce, A.E.E.	The recycling endosome protein Rab25 coordinates collective cell movements in the zebrafish surface epithelium	eLIFE	2021	10	
ZDB-PUB-210409-3	33824332	Brunt, L., Greicius, G., Rogers, S., Evans, B.D., Virshup, D.M., Wedgwood, K.C.A., Scholpp, S.	Vangl2 promotes the formation of long cytonemes to enable distant Wnt/&#x3b2;-catenin signaling	Nature communications	2021	12	2058
ZDB-PUB-210410-12	33836141	Samarasinghe, K.T.G., Jaime-Figueroa, S., Burgess, M., Nalawansha, D.A., Dai, K., Hu, Z., Bebenek, A., Holley, S.A., Crews, C.M.	Targeted degradation of transcription factors by TRAFTACs: TRAnscription Factor TArgeting Chimeras	Cell chemical biology	2021	28(5)	648-661.e5
ZDB-PUB-210520-9	34010604	Ziegler, A., Duclaux-Loras, R., Revenu, C., Charbit-Henrion, F., Begue, B., Duroure, K., Grimaud, L., Guihot, A.L., Desquiret-Dumas, V., Zarhrate, M., Cagnard, N., Mas, E., Breton, A., Edouard, T., Billon, C., Frank, M., Colin, E., Lenaers, G., Henrion, D., Lyonnet, S., Faivre, L., Alembik, Y., Philippe, A., Moulin, B., Reinstein, E., Tzur, S., Attali, R., McGillivray, G., White, S.M., Gallacher, L., Kutsche, K., Schneeberger, P., Girisha, K.M., Nayak, S.S., Pais, L., Maroofian, R., Rad, A., Vona, B., Karimiani, E.G., Lekszas, C., Haaf, T., Martin, L., Ruemmele, F., Bonneau, D., Cerf-Bensussan, N., Del Bene, F., Parlato, M.	Bi-allelic variants in IPO8 cause a connective tissue disorder associated with cardiovascular defects, skeletal abnormalities, and immune dysregulation	American journal of human genetics	2021	108(6)	1126-1137
ZDB-PUB-210602-8	34061173	Ye, Z., Braden, C.R., Wills, A., Kimelman, D.	Identification of in vivo Hox13-binding sites reveals an essential locus controlling zebrafish brachyury expression	Development (Cambridge, England)	2021	148(11)	
ZDB-PUB-210603-2	34063300	Hung, J.C., Wu, J.L., Hong, J.R.	Proapoptotic <i>Bad</i> Involved in Brain Development, When Severely Defected, Induces Dramatic Malformation in Zebrafish	International Journal of Molecular Sciences	2021	22(9)	
ZDB-PUB-210703-41	34214072	Vong, Y.H., Sivashanmugam, L., Leech, R., Zaucker, A., Jones, A., Sampath, K.	The RNA-binding protein Igf2bp3 is critical for embryonic and germline development in zebrafish	PLoS Genetics	2021	17	e1009667
ZDB-PUB-210706-10	34222245	Li, Y.L., Cheng, X.N., Lu, T., Shao, M., Shi, D.L.	Syne2b/Nesprin-2 Is Required for Actin Organization and Epithelial Integrity During Epiboly Movement in Zebrafish	Frontiers in cell and developmental biology	2021	9	671887
ZDB-PUB-210708-6	34233026	Gladysheva, J., Evnukova, E., Kondakova, E., Kulakova, M., Efremov, V.	Neurulation in the posterior region of zebrafish, Danio rerio embryos	Journal of morphology	2021	282(10)	1437-1454
ZDB-PUB-210714-27	34254429	Hasanpour, S., Eagderi, S., Poorbagher, H., Angrand, P.O., Hasanpour, M., Lashkarbolok, M.	The effect of Activin pathway modulation on the expression of both pluripotency and differentiation markers during early zebrafish development compared with other vertebrates	Journal of experimental zoology. Part B, Molecular and developmental evolution	2021	336(7)	562-575
ZDB-PUB-210801-5	34331767	Yuikawa, T., Ikeda, M., Tsuda, S., Saito, S., Yamasu, K.	Involvement of Oct4-type transcription factor Pou5f3 in posterior spinal cord formation in zebrafish embryos	Development, growth & differentiation	2021	63(6)	306-322
ZDB-PUB-210817-11	34398141	Alaniz Emig, A., Williams, M.L.K.	Generation of Na&#xef;ve Blastoderm Explants from Zebrafish Embryos	Journal of visualized experiments : JoVE	2021	(173)	
ZDB-PUB-210905-4	34480404	Ramesh, S.T., Navyasree, K.V., Sah, S., Ashok, A.B., Qathoon, N., Mohanty, S., Swain, R.K., Umasankar, P.K.	BMP2K phosphorylates AP-2 and regulates clathrin-mediated endocytosis	Traffic (Copenhagen, Denmark)	2021	22(11)	377-396
ZDB-PUB-210923-2	34402427	Song, Y., Hyeon, C.	Cost-precision trade-off relation determines the optimal morphogen gradient for accurate biological pattern formation	eLIFE	2021	10	
ZDB-PUB-211001-9	34591076	Hu, B., Rodriguez, J.J., Kakkerla Balaraju, A., Gao, Y., Nguyen, N.T., Steen, H., Suhaib, S., Chen, S., Lin, F.	Glypican 4 mediates Wnt transport between germ layers via signaling filopodia	The Journal of cell biology	2021	220(12)	
ZDB-PUB-211022-41	34667153	Pradhan, S.J., Reddy, P.C., Smutny, M., Sharma, A., Sako, K., Oak, M.S., Shah, R., Pal, M., Deshpande, O., Dsilva, G., Tang, Y., Mishra, R., Deshpande, G., Giraldez, A.J., Sonawane, M., Heisenberg, C.P., Galande, S.	Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis	Nature communications	2021	12	6094
ZDB-PUB-211028-5	34705461	Darrah, K., Wesalo, J., Lukasak, B., Tsang, M., Chen, J.K., Deiters, A.	Small Molecule Control of Morpholino Antisense Oligonucleotide Function through Staudinger Reduction	Journal of the American Chemical Society	2021	143(44)	18665-18671
ZDB-PUB-211106-4	34737283	Guglielmi, L., Heliot, C., Kumar, S., Alexandrov, Y., Gori, I., Papaleonidopoulou, F., Barrington, C., East, P., Economou, A.D., French, P.M.W., McGinty, J., Hill, C.S.	Smad4 controls signaling robustness and morphogenesis by differentially contributing to the Nodal and BMP pathways	Nature communications	2021	12	6374
ZDB-PUB-211216-8	34903892	Szenker-Ravi, E., Ott, T., Khatoo, M., de Bellaing, A.M., Goh, W.X., Chong, Y.L., Beckers, A., Kannesan, D., Louvel, G., Anujan, P., Ravi, V., Bonnard, C., Moutton, S., Schoen, P., Fradin, M., Colin, E., Megarbane, A., Daou, L., Chehab, G., Di Filippo, S., Rooryck, C., Deleuze, J.F., Boland, A., Arribard, N., Eker, R., Tohari, S., Ng, A.Y., Rio, M., Lim, C.T., Eisenhaber, B., Eisenhaber, F., Venkatesh, B., Amiel, J., Crollius, H.R., Gordon, C.T., Gossler, A., Roy, S., Attie-Bitach, T., Blum, M., Bouvagnet, P., Reversade, B.	Discovery of a genetic module essential for assigning left-right asymmetry in humans and ancestral vertebrates	Nature Genetics	2021	54(1)	62-72
ZDB-PUB-211222-5	34931244	Lohani, S., Funato, Y., Akieda, Y., Mizutani, K., Takai, Y., Ishitani, T., Miki, H.	A novel role of PRL in regulating epithelial cell density by inducing apoptosis at confluence	Journal of Cell Science	2021	135(2)	
ZDB-PUB-211230-7	34943252	Li, J.T., Cheng, X.N., Zhang, C., Shi, D.L., Shao, M.	The Adaptor Protein Lurap1 Is Required for Cell Cohesion during Epiboly Movement in Zebrafish	Biology	2021	10(12)	
ZDB-PUB-220208-20	35129208	Ikeda, T., Inamori, K., Kawanishi, T., Takeda, H.	Reemployment of Kupffer's vesicle cells into axial and paraxial mesoderm via transdifferentiation	Development, growth & differentiation	2022	64(3)	163-177
ZDB-PUB-220216-33	35166844	Okada, K., Aoki, K., Tabei, T., Sugio, K., Imai, K., Bonkohara, Y., Kamachi, Y.	Key sequence features of CRISPR RNA for dual-guide CRISPR-Cas9 ribonucleoprotein complexes assembled with wild-type or HiFi Cas9	Nucleic acids research	2022	50(5)	2854-2871
ZDB-PUB-220226-8	35204004	Trengove, M., Wyett, R., Liongue, C., Ward, A.C.	Functional Analysis of Zebrafish <i>socs4a</i>: Impacts on the Notochord and Sensory Function	Brain sciences	2022	12(2)	
ZDB-PUB-220303-35	34797706	Chen, L., Xu, W., Liu, K., Jiang, Z., Han, Y., Jin, H., Zhang, L., Shen, W., Jia, S., Sun, Q., Meng, A.	5' Half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos	Science advances	2021	7	eabh0494
ZDB-PUB-220330-5	35346765	Huang, Y., Wang, W.F., Huang, C.X., Li, X.H., Liu, H., Wang, H.L.	miR-731 modulates the zebrafish heart morphogenesis via targeting Calcineurin/Nfatc3a pathway	Biochimica et biophysica acta. General subjects	2022	1866(6)	130133
ZDB-PUB-220514-22	35552388	Vicencio, J., Sánchez-Bolaños, C., Moreno-Sánchez, I., Brena, D., Vejnar, C.E., Kukhtar, D., Ruiz-López, M., Cots-Ponjoan, M., Rubio, A., Melero, N.R., Crespo-Cuadrado, J., Carolis, C., Pérez-Pulido, A.J., Giráldez, A.J., Kleinstiver, B.P., Cerón, J., Moreno-Mateos, M.A.	Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes	Nature communications	2022	13	2601
ZDB-PUB-220526-6	35613615	Boutillon, A., Escot, S., Elouin, A., Jahn, D., González-Tirado, S., Starruß, J., Brusch, L., David, N.B.	Guidance by followers ensures long-range coordination of cell migration through &#x3b1;-catenin mechanoperception	Developmental Cell	2022	57(12)	1529-1544.e5
ZDB-PUB-220614-9	35693948	Xing, C., Shen, W., Gong, B., Li, Y., Yan, L., Meng, A.	Maternal Factors and Nodal Autoregulation Orchestrate <i>Nodal</i> Gene Expression for Embryonic Mesendoderm Induction in the Zebrafish	Frontiers in cell and developmental biology	2022	10	887987
ZDB-PUB-220716-9	35839125	Kundu, J., Ghosh, A., Ghosh, U., Das, A., Nagar, D., Pattanayak, S., Ghose, A., Sinha, S.	Synthesis of Phosphorodiamidate Morpholino Oligonucleotides Using Trityl and Fmoc Chemistry in an Automated Oligo Synthesizer	The Journal of organic chemistry	2022	87(15)	9466-9478
ZDB-PUB-220813-3	35955524	Zheng, J., Long, F., Cao, X., Xiong, B., Li, Y.	Knockout of <i>Katnal2</i> Leads to Autism-like Behaviors and Developmental Delay in Zebrafish	International Journal of Molecular Sciences	2022	23(15)	
ZDB-PUB-220908-1	36068175	Pattanayak, S., Sarode, B.R., Deiters, A., Chen, J.K.	Bicyclic Caged Morpholino Oligonucleotides for Optical Gene Silencing	Chembiochem : a European journal of chemical biology	2022	23(21)	e202200374
ZDB-PUB-220922-9	36127363	Niescierowicz, K., Pryszcz, L., Navarrete, C., Tralle, E., Sulej, A., Abu Nahia, K., Kasprzyk, M.E., Misztal, K., Pateria, A., Pakuła, A., Bochtler, M., Winata, C.	Adar-mediated A-to-I editing is required for embryonic patterning and innate immune response regulation in zebrafish	Nature communications	2022	13	5520
ZDB-PUB-220923-5	36133924	Talbot, C.D., Walsh, M.D., Cutty, S.J., Elsayed, R., Vlachaki, E., Bruce, A.E.E., Wardle, F.C., Nelson, A.C.	Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops	Frontiers in cell and developmental biology	2022	10	982477
ZDB-PUB-220929-39	24425803	Li, X., Lu, Y.C., Dai, K., Torregroza, I., Hla, T., Evans, T.	Elavl1a regulates zebrafish erythropoiesis via posttranscriptional control of gata1	Blood	2014	123	1384-92
ZDB-PUB-221025-8	36274939	Toh, K., Saunders, D., Verd, B., Steventon, B.	Zebrafish neuromesodermal progenitors undergo a critical state transition <i>in&#xa0;vivo</i>	iScience	2022	25	105216
ZDB-PUB-221109-4	36346812	Watson, C.J., Tang, W.J., Rojas, M.F., Fiedler, I.A.K., Morfin Montes de Oca, E., Cronrath, A.R., Callies, L.K., Swearer, A.A., Ahmed, A.R., Sethuraman, V., Addish, S., Farr, G.H., Gómez, A.E., Rai, J., Monstad-Rios, A.T., Gardiner, E.M., Karasik, D., Maves, L., Busse, B., Hsu, Y.H., Kwon, R.Y.	wnt16 regulates spine and muscle morphogenesis through parallel signals from notochord and dermomyotome	PLoS Genetics	2022	18	e1010496
ZDB-PUB-221216-10	36515556	Truszkowski, L., Batur, D., Long, H., Tarbashevich, K., Vos, B.E., Trappmann, B., Raz, E.	Primordial germ cells adjust their protrusion type while migrating in different tissue contexts in vivo	Development (Cambridge, England)	2022	150(2)	
ZDB-PUB-221220-14	36535930	Liu, Y., Lin, Z., Peng, Y., Jiang, Y., Zhang, X., Zhu, H., Zhang, L., Chen, J., Shu, X., Luo, M., Xie, D., Chen, Y., Liao, H., Liu, M., Zhang, X., Liu, S., Wang, H., Zhou, B., Sun, H.	Embryonic organizer formation disorder leads to multiorgan dysplasia in Down syndrome	Cell Death & Disease	2022	13	10541054
ZDB-PUB-221225-5	36566327	Özelçi, E., Mailand, E., Rüegg, M., Oates, A.C., Sakar, M.S.	Deconstructing body axis morphogenesis in zebrafish embryos using robot-assisted tissue micromanipulation	Nature communications	2022	13	79347934
ZDB-PUB-230304-40	36869044	Xue, N., Liu, X., Zhang, D., Wu, Y., Zhong, Y., Wang, J., Fan, W., Jiang, H., Zhu, B., Ge, X., Gonzalez, R.V.L., Chen, L., Zhang, S., She, P., Zhong, Z., Sun, J., Chen, X., Wang, L., Gu, Z., Zhu, P., Liu, M., Li, D., Zhong, T.P., Zhang, X.	Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD	Nature communications	2023	14	12241224
ZDB-PUB-230420-69	37078062	Das, U., Kundu, J., Shaw, P., Bose, C., Ghosh, A., Gupta, S., Sarkar, S., Bhadra, J., Sinha, S.	Self-transfecting GMO-PMO chimera targeting <i>Nanog</i> enable gene silencing <i>in&#xa0;vitro</i> and suppresses tumor growth in 4T1 allografts in mouse	Molecular therapy. Nucleic acids	2023	32	203228203-228
ZDB-PUB-230905-52	37665167	Harish, R.K., Gupta, M., Zöller, D., Hartmann, H., Gheisari, A., Machate, A., Hans, S., Brand, M.	Real-time monitoring of endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation	Development (Cambridge, England)	2023	150(19)	
ZDB-PUB-231019-52	37850839	Yuikawa, T., Sato, T., Ikeda, M., Tsuruoka, M., Yasuda, K., Sato, Y., Nasu, K., Yamasu, K.	Elongation of the developing spinal cord is driven by Oct4-type transcription factor-mediated regulation of retinoic acid signaling in zebrafish embryos	Developmental Dynamics : an official publication of the American Association of Anatomists	2023	253(4)	404-422
ZDB-PUB-231020-63	37860955	McLeod, J.J., Rothschild, S.C., Francescatto, L., Kim, H., Tombes, R.M.	Specific CaMKIIs mediate convergent extension cell movements in early zebrafish development	Developmental Dynamics : an official publication of the American Association of Anatomists	2023	253(4)	390-403
ZDB-PUB-231116-5	37968389	Saunders, L.M., Srivatsan, S.R., Duran, M., Dorrity, M.W., Ewing, B., Linbo, T.H., Shendure, J., Raible, D.W., Moens, C.B., Kimelman, D., Trapnell, C.	Embryo-scale reverse genetics at single-cell resolution	Nature	2023	623(7988)	782-791
ZDB-PUB-240301-5	38420933	Del Prado, J.A., Ding, Y., Sonneville, J., der Kolk, K.V., Moreno-Mateos, M.A., Málaga-Trillo, E., Spaink, H.P.	Comparing robotic and manual injection methods in zebrafish embryos for high-throughput RNA silencing using CRISPR-RfxCas13d	Biotechniques	2024	76(5)	183-191
ZDB-PUB-240306-14	38444829	Camacho-Macorra, C., Tabanera, N., Sánchez-Bustamante, E., Bovolenta, P., Cardozo, M.J.	Maternal <i>vgll4a</i> regulates zebrafish epiboly through Yap1 activity	Frontiers in cell and developmental biology	2024	12	13626951362695
ZDB-PUB-240307-15	38448978	Koparir, A., Lekszas, C., Keseroglu, K., Rose, T., Rappl, L., Rad, A., Maroofian, R., Narendran, N., Hasanzadeh, A., Karimiani, E.G., Boschann, F., Kornak, U., Klopocki, E., Özbudak, E.M., Vona, B., Haaf, T., Liedtke, D.	Zebrafish as a model to investigate a biallelic gain-of-function variant in MSGN1, associated with a novel skeletal dysplasia syndrome	Human genomics	2024	18	2323
ZDB-PUB-240709-6	38975838	Labudina, A.A., Meier, M., Gimenez, G., Tatarakis, D., Ketharnathan, S., Mackie, B., Schilling, T.F., Antony, J., Horsfield, J.A.	Cohesin composition and dosage independently affect early development in zebrafish	Development (Cambridge, England)	2024	151(15)	
ZDB-PUB-241025-10	39449741	Ventura Fernandes, B.H., Junqueira, M.S., MacRae, C., Silveira de Carvalho, L.R.	Standardizing CRISPR-Cas13 knockdown technique to investigate the role of cdh2 gene in pituitary development through growth hormone expression and transcription factors	Frontiers in endocrinology	2024	15	14666381466638
ZDB-PUB-241028-7	39465278	Kai, M., Kondo, M.	Suppression of Pcdh8/paraxial protocadherin is required for efficient neighbor exchange in morphogenetic cell movement during zebrafish notochord formation	Scientific Reports	2024	14	2569725697
ZDB-PUB-961014-1007	7600961	Schulte-Merker, S., Hammerschmidt, M., Beuchle, D., Cho, K.W., De Robertis, E.M., and Nüsslein-Volhard, C.	Expression of zebrafish goosecoid and no tail gene products in wild-type and mutant no tail embryos	Development (Cambridge, England)	1994	120	843-852
ZDB-PUB-961014-1008	1295726	Schulte-Merker, S., Ho, R.K., Herrmann, B.G., and Nüsslein-Volhard, C.	The protein product of the zebrafish homologue of the mouse T gene is expressed in nuclei of the germ ring and the notochord of the early embryo	Development (Cambridge, England)	1992	116	1021-1032
ZDB-PUB-961014-1009	7535172	Schulte-Merker, S. and Smith, J.C.	Mesoderm formation in response to Brachyury requires FGF signalling	Current biology : CB	1995	5	62-67
ZDB-PUB-961014-1010	7600949	Schulte-Merker, S., van Eeden, F.J.M., Halpern, M.E., Kimmel, C.B., and Nüsslein-Volhard, C.	no tail (ntl) is the zebrafish homologue of the mouse T (Brachyury) gene	Development (Cambridge, England)	1994	120	1009-1015
ZDB-PUB-961014-1083	7687227	Strähle, U., Blader, P., Henrique, D., and Ingham, P.W.	Axial, a zebrafish gene expressed along the developing body axis, shows altered expression in cyclops mutant embryos	Genes & Development	1993	7	1436-1446
ZDB-PUB-961014-1107	8288127	Takeda, H., Matsuzaki, T., Oki, T., Miyagawa, T., and Amanuma, H.	A novel POU domain gene, zebrafish pou2: expression and roles of two alternatively spliced twin products in early development	Genes & Development	1994	8	45-59
ZDB-PUB-961014-1111	7477317	Talbot, W.S., Trevarrow, B., Halpern, M.E., Melby, A.E., Farr, G., Postlethwait, J.H., Jowett, T., Kimmel, C.B., and Kimelman, D.	A homeobox gene essential for zebrafish notochord development	Nature	1995	378	150-157
ZDB-PUB-961014-1117	7589816	Thisse, C., Thisse, B., and Postlethwait, J.H.	Expression of snail2, a second member of the zebrafish Snail family, in cephalic mesendoderm and presumptive neural crest of wild-type and spadetail mutant embryos	Developmental Biology	1995	172	86-99
ZDB-PUB-961014-1118	8306883	Thisse, C., Thisse, B., Schilling, T.F., and Postlethwait, J.H.	Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos	Development (Cambridge, England)	1993	119	1203-1215
ZDB-PUB-961014-1135	7768180	Toyama, R., O'Connell, M.L., Wright, C.V.E., Kuehn, M.R., and Dawid, I.B.	Nodal induces ectopic goosecoid and lim1 expression and axis duplication in zebrafish	Development (Cambridge, England)	1995	121	383-391
ZDB-PUB-961014-1219	8565839	Weinberg, E.S., Allende, M.L., Kelly, C.S., Abdelhamid, A., Murakami, T., Andermann, P., Doerre, O.G., Grunwald, D.J., and Riggleman, B.	Developmental regulation of zebrafish MyoD in wild-type, no-tail and spadetail embryos	Development (Cambridge, England)	1996	122	271-280
ZDB-PUB-961014-1281	8149909	Xu, Q., Holder, N., Patient, R., and Wilson, S.W.	Spatially regulated expression of three receptor tyrosine kinase genes during gastrulation in the zebrafish	Development (Cambridge, England)	1994	120	287-299
ZDB-PUB-961014-1282	8575301	Xu, Q.L., Alldus, G., Holder, N., and Wilkinson, D.G.	Expression of truncated Sek-1 receptor tyrosine kinase disrupts the segmental restriction of gene expression in the Xenopus and zebrafish hindbrain	Development (Cambridge, England)	1995	121	4005-4016
ZDB-PUB-961014-1290	8589433	Yan, Y.L., Hatta, K., Riggleman, B., and Postlethwait, J.H.	Expression of a type II collagen gene in the zebrafish embryonic axis	Developmental Dynamics : an official publication of the American Association of Anatomists	1995	203	363-376
ZDB-PUB-961014-198	8660880	Danos, M.C. and Yost, H.J.	Role of notochord in specification of cardiac left-right orientation in zebrafish and Xenopus	Developmental Biology	1996	177	96-103
ZDB-PUB-961014-226	8652415	DeVries, C.J.M., DeBoer, J., Joore, J., Strähle, U., VanAchterberg, T.A.E., Huylebröck, D., Verschüren, K., Miyazono, K., VandenEijnden-vanRaaij, A.J.M., and Zivkovic, D.	Active complex formation of type I and type II activin and TGF beta receptors in vivo as studied by overexpression in zebrafish embryos	Mechanisms of Development	1996	54(2)	225-236
ZDB-PUB-961014-326	8725279	Franklin, J.L. and Sargent, T.D.	Ventral neural cadherin, a novel cadherin expressed in a subset of neural tissues in the zebrafish embryo	Developmental Dynamics : an official publication of the American Association of Anatomists	1996	206	121-130
ZDB-PUB-961014-374	7555724	Griffin, K., Patient, R., and Holder, N.	Analysis of FGF function in normal and no tail zebrafish embryos reveals separate mechanisms for formation of the trunk and the tail	Development (Cambridge, England)	1995	121	2983-2994
ZDB-PUB-961014-388	8402905	Halpern, M.E., Ho, R.K., Walker, C., and Kimmel, C.B.	Induction of muscle pioneers and floor plate is distinguished by the zebrafish no tail mutation	Cell	1993	75	99-111
ZDB-PUB-961014-389	8575325	Halpern, M.E., Thisse, C., Ho, R.K., Thisse, B., Riggleman, B., Trevarrow, B., Weinberg, E.S., Postlethwait, J.H., and Kimmel, C.B.	Cell-autonomous shift from axial to paraxial mesodermal development in zebrafish floating head mutants	Development (Cambridge, England)	1995	121	4257-4264
ZDB-PUB-961014-393	8306877	Hammerschmidt, M. and Nüsslein-Volhard, C.	The expression of a zebrafish gene homologous to Drosophila snail suggests a conserved function in invertebrate and vertebrate gastrulation	Development (Cambridge, England)	1993	119	1107-1118
ZDB-PUB-961014-423	8834478	Hatta, K. and Takahashi, Y.	Secondary axis induction by heterospecific organizers in zebrafish	Developmental Dynamics : an official publication of the American Association of Anatomists	1996	205	183-195
ZDB-PUB-961014-500	7905819	Joly, J.S., Joly, C., Schulte-Merker, S., Boulekbache, H., and Condamine, H.	The ventral and posterior expression of the zebrafish homeobox gene eve1 is perturbed in dorsalized and mutant embryos	Development (Cambridge, England)	1993	119	1261-1275
ZDB-PUB-961014-543	8562427	Kelly, G.M., Erezyilmaz, D.F., and Moon, R.T.	Induction of a secondary embryonic axis in zebrafish occurs following the overexpression of ß-catenin	Mechanisms of Development	1995	53(2)	261-273
ZDB-PUB-961014-544	7600994	Kelly, G.M., Greenstein, P., Erezyilmaz, D.F., and Moon, R.T.	Zebrafish wnt8 and wnt8b share a common activity but are involved in distinct developmental pathways	Development (Cambridge, England)	1995	121	1787-1799
ZDB-PUB-961014-613	8344258	Kispert, A. and Herrmann, B.G.	The Brachyury gene encodes a novel DNA binding protein	The EMBO journal	1993	12	3211-3220
ZDB-PUB-961014-632	8269519	Krauss, S., Concordet, J.P., and Ingham, P.W.	A functionally conserved homolog of the Drosophila segment polarity gene hh is expressed in tissues with polarizing activity in zebrafish embryos	Cell	1993	75(7)	1431-1444
ZDB-PUB-961014-748	8681803	Melby, A.E., Warga, R.M., and Kimmel, C.B.	Specification of cell fates at the dorsal margin of the zebrafish gastrula	Development (Cambridge, England)	1996	122	2225-2237
ZDB-PUB-961014-857	8187646	Strähle, U., and Jesuthasan, S.	Ultraviolet irradiation impairs epiboly in zebrafish embryos: evidence for a microtubule-dependent mechanism of epiboly	Development (Cambridge, England)	1993	119	909-919
ZDB-PUB-961014-888	8171321	Postlethwait, J., Johnson, S., Midson, C.N., Talbot, W.S., Gates, M., Ballenger, E.W., Africa, D., Andrews, R., Carl, T., Eisen, J.S., Horne, S., Kimmel, C.B., Hutchinson, M., Johnson, M., and Rodriguez, A.	A genetic linkage map for the zebrafish	Science (New York, N.Y.)	1994	264	699-703
ZDB-PUB-961014-939	7734395	Rissi, M., Wittbrodt, J., Delot, E., Naegeli, M., and Rosa, F.M.	Zebrafish Radar: a new member of the TGF-ß superfamily defines dorsal regions of the neural plate and the embryonic retina	Mechanisms of Development	1995	49(3)	223-34
ZDB-PUB-961014-964	8674426	Sagerström, C.G., Grinblat, Y., and Sive, H.	Anteroposterior patterning in the zebrafish, Danio rerio: an explant assay reveals inductive and suppressive cell interactions	Development (Cambridge, England)	1996	122	1873-1883
ZDB-PUB-961101-14	8756288	Conlon, F.L., Sedgwick, S.G., Weston, K.M., and Smith, J.C.	Inhibition of Xbra transcription activation causes defects in mesodermal patterning and reveals autoregulation of Xbra in dorsal mesoderm	Development (Cambridge, England)	1996	122(8)	2427-2435
ZDB-PUB-961101-15	8806823	Essner, J.J., Laing, J.G., Beyer, E.C., Johnson, R.G., and Hackett, P.B. Jr.	Expression of zebrafish connexin43.4 in the notochord and tail bud of wild-type and mutant no tail embryos	Developmental Biology	1996	177(2)	449-462
ZDB-PUB-961101-37	8684485	Currie, P.D. and Ingham, P.W.	Induction of a specific muscle cell type by a hedgehog-like protein in zebrafish	Nature	1996	382(6590)	452-455
ZDB-PUB-961107-2	8787757	Concordet, J.P., Lewis, K.E., Moore, J.W., Goodrich, L.V., Johnson, R.L., Scott, M.P., and Ingham, P.W.	Spatial regulation of a zebrafish patched homologue reflects the roles of sonic hedgehog and protein kinase A in neural tube and somite patterning	Development (Cambridge, England)	1996	122(9)	2835-2846
ZDB-PUB-961219-9	8843197	Hammerschmidt, M., Serbedzija, G.N., and McMahon, A.P.	Genetic analysis of dorsoventral pattern formation in the zebrafish: requirement of a BMP-like ventralizing activity and its dorsal repressor	Genes & Development	1996	10(19)	2452-2461
ZDB-PUB-970210-10	9007234	Stemple, D.L., Solnica-Krezel, L., Zwartkruis, F., Neuhauss, S.C., Schier, A.F., Malicki, J., Stainier, D.Y., Abdelilah, S., Rangini, Z., Mountcastle-Shah, E., and Driever, W.	Mutations affecting development of the notochord in zebrafish	Development (Cambridge, England)	1996	123	117-128
ZDB-PUB-970210-12	9007236	Hammerschmidt, M., Pelegri, F., Mullins, M.C., Kane, D.A., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Heisenberg, C.P., Jiang, Y.J., Kelsh, R.N., Odenthal, J., Warga, R.M., and Nüsslein-Volhard, C.	Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio	Development (Cambridge, England)	1996	123	143-151
ZDB-PUB-970210-13	9007237	van Eeden, F.J., Granato, M., Schach, U., Brand, M., Furutani-Seiki-, M., Haffter, P., Hammerschmidt, M., Heisenberg, C.P., Jiang, Y.J., Kane, D.A., Kelsh, R.N., Mullins, M.C., Odenthal, J., Warga, R.M., Allende, M.L., Weinberg, E.S., and Nüsslein-Volhard, C.	Mutations affecting somite formation and patterning in the zebrafish, Danio rerio	Development (Cambridge, England)	1996	123	153-164
ZDB-PUB-970210-16	9007240	Heisenberg, C.P., Brand, M., Jiang, Y.J., Warga, R.M., Beuchle, D., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Hammerschmidt, M., Kane, D.A., Kelsh, R.N., Mullins, M.C., Odenthal, J., and Nüsslein-Volhard, C.	Genes involved in forebrain development in the zebrafish, Danio rerio	Development (Cambridge, England)	1996	123	191-203
ZDB-PUB-970210-2	9007226	Haffter, P., Granato, M., Brand, M., Mullins, M.C., Hammerschmidt, M., Kane, D.A., Odenthal, J., van Eeden, F.J., Jiang, Y.J., Heisenberg, C.P., Kelsh, R.N., Furutani-Seiki, M., Vogelsang, E., Beuchle, D., Schach, U., Fabian, C., and Nüsslein-Volhard, C.	The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio	Development (Cambridge, England)	1996	123	1-36
ZDB-PUB-970210-3	9007227	Driever, W., Solnica-Krezel, L., Schier, A.F., Neuhauss, S.C., Malicki, J., Stemple, D.L., Stainier, D.Y., Zwartkruis, F., Abdelilah, S., Rangini, Z., Belak, J., and Boggs, C.	A genetic screen for mutations affecting embryogenesis in zebrafish	Development (Cambridge, England)	1996	123	37-46
ZDB-PUB-970210-6	9007230	Solnica-Krezel, L., Stemple, D.L., Mountcastle-Shah, E., Rangini, Z., Neuhauss, S.C., Malicki, J., Schier, A.F., Stainier, D.Y., Zwartkruis, F., Abdelilah, S., and Driever, W.	Mutations affecting cell fates and cellular rearrangements during gastrulation in zebrafish	Development (Cambridge, England)	1996	123	67-80
ZDB-PUB-970210-7	9007231	Mullins, M.C., Hammerschmidt, M., Kane, D.A., Odenthal, J., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Heisenberg, C.P., Jiang, Y.J., Kelsh, R.N., and Nüsslein-Volhard, C.	Genes establishing dorsoventral pattern formation in the zebrafish embryo: the ventral specifying genes	Development (Cambridge, England)	1996	123	81-93
ZDB-PUB-970210-8	9007232	Hammerschmidt, M., Pelegri, F., Mullins, M.C., Kane, D.A., van Eeden, F.J., Granato, M., Brand, M., Furutani-Seiki, M., Haffter, P., Heisenberg, C.P., Jiang, Y.J., Kelsh, R.N., Odenthal, J., Warga, R.M., and Nüsslein-Volhard, C.	dino and mercedes, two genes regulating dorsal development in the zebrafish embryo	Development (Cambridge, England)	1996	123	95-102
ZDB-PUB-970210-9	9007233	Odenthal, J., Haffter, P., Vogelsang, E., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Hammerschmidt, M., Heisenberg, C.P., Jiang, Y.J., Kane, D.A., Kelsh, R.N., Mullins, M.C., Warga, R.M., Allende, M.L., Weinberg, E.S., and Nüsslein-Volhard, C.	Mutations affecting the formation of the notochord in the zebrafish, Danio rerio	Development (Cambridge, England)	1996	123	103-115
ZDB-PUB-970228-15	9053309	Schier, A.F., Neuhauss, S.C.F., Helde, K.A., Talbot, W.S., and Driever, W.	The one-eyed pinhead gene functions in mesoderm and endoderm formation in zebrafish and interacts with no tail	Development (Cambridge, England)	1997	124(2)	327-342
ZDB-PUB-970306-4	8946241	Strähle, U., Blader, P., and Ingham, P.W.	Expression of axial and sonic hedgehog in wildtype and midline defective zebrafish embryos	The International journal of developmental biology	1996	40(5)	929-940
ZDB-PUB-970326-2	9119115	Hug, B., Walter, V., and Grunwald, D.J.	tbx6, a brachyury-related gene expressed by ventral mesendodermal precursors in the zebrafish embryo	Developmental Biology	1997	183(1)	61-73
ZDB-PUB-970327-2	9076679	Nikaido, M., Tada, M., Saji, T., and Ueno, N.	Conservation of BMP signaling in zebrafish mesoderm patterning	Mechanisms of Development	1997	61(1-2)	75-88
ZDB-PUB-970327-4	9076689	Bruneau, S. and Rosa, F.M.	Dynamo, a new zebrafish DVR member of the TGF-b superfamily is expressed in the posterior neural tube and is up-regulated by Sonic hedgehog	Mechanisms of Development	1997	61(1-2)	199-212
ZDB-PUB-970429-63	9096349	Conway, G., Margoliath, A., Wong-Madden, S., Roberts, R.J., and Gilbert, W.	Jak1 kinase is required for cell migrations and anterior specification in zebrafish embryos	Proceedings of the National Academy of Sciences of the United States of America	1997	94(7)	3082-3087
ZDB-PUB-970602-1	9118801	Fisher, S., Amacher, S.L., and Halpern, M.E.	Loss of cerebum function ventralizes the zebrafish embryo	Development (Cambridge, England)	1997	124(7)	1301-1311
ZDB-PUB-970602-18	9142985	Abdelilah, S. and Driever, W.	Pattern formation in janus-mutant zebrafish embryos	Developmental Biology	1997	184(1)	70-84
ZDB-PUB-970602-19	9142986	Heisenberg, C.P. and Nüsslein-Volhard, C.	The function of silberblick in the positioning of the eye anlage in the zebrafish embryo	Developmental Biology	1997	184(1)	85-94
ZDB-PUB-970724-2	9186051	Melby, A.E., Kimelman, D., and Kimmel, C.B.	Spatial regulation of <em>floating head</em> expression in the developing notochord	Developmental Dynamics : an official publication of the American Association of Anatomists	1997	209(2)	156-165
ZDB-PUB-970724-6	9178253	Sumoy, L., Keasey, J.B., Dittman, T.D., and Kimelman, D.	A role for notochord in axial vascular development revealed by analysis of phenotype and the expression of VEGR-2 in zebrafish flh and ntl mutant embryos	Mechanisms of Development	1997	63(1)	15-27
ZDB-PUB-970812-2	9242414	Halpern, M.E., Hatta, K., Amacher, S.L., Talbot, W.S., Yan, Y.-L., Thisse, B., Thisse, C., Postlethwait, J.H., and Kimmel, C.B.	Genetic interactions in zebrafish midline development	Developmental Biology	1997	187(2)	154-170
ZDB-PUB-970917-4	9272956	Yoon, C., Kawakami, K., and N. Hopkins	Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells	Development (Cambridge, England)	1997	124(16)	3157-3165
ZDB-PUB-970918-14	9119113	Fouquet, B., Weinstein, B.M., Serluca, F.C., and Fishman, M.C.	Vessel patterning in the embryo of the zebrafish: guidance by notochord	Developmental Biology	1997	183(1)	37-48
ZDB-PUB-971103-2	9303533	Blagden, C.S., P.D. Currie, P.W. Ingham, and S.M. Hughes	Notochord induction of zebrafish slow muscle mediated by Sonic hedgehog	Genes & Development	1997	11(17)	2163-2175
ZDB-PUB-971203-9	9334285	Chen, J.-N., van Eeden, F.J.M., Warren, K.S., Chin, A., Nüsslein-Volhard, C., Haffter, P., and Fishman, M.C.	Left-right pattern of cardiac BMP4 may drive asymmetry of the heart in zebrafish	Development (Cambridge, England)	1997	124(21)	4373-4382
ZDB-PUB-971223-1	9391103	Xie, Y., Chen, X., and Wagner, T.E.	A ribozyme-mediated gene "knockdown" strategy for the identification of gene function in zebrafish	Proceedings of the National Academy of Sciences of the United States of America	1997	94	13777-13781
ZDB-PUB-980205-18	9441677	Glasgow, E., Karavanov, A.A., and Dawid, I.B.	Neuronal and neuroendocrine expression of lim3, a LIM class homeobox gene, is altered in mutant zebrafish with axial signaling defects	Developmental Biology	1997	192	405-419
ZDB-PUB-980205-19	9441687	Miller-Bertoglio, V.E., Fisher, S., Sanchez, A., Mullins, M.C., and Halpern, M.	Differential regulation of chordin expression domains in mutant zebrafish	Developmental Biology	1997	192	537-550
ZDB-PUB-980317-2	9537416	Postlethwait, J.H, Yan, Y.-L., Gates, M.A., Horne, S., Amores, A., Brownlie, A., Donovan, A., Egan, E.S., Force, A., Gong, Z., Goutel, C., Fritz, A., Kelsh, R., Knapik, E., Liao, E., Paw, B., Ransom, D., Singer, A., Thomson, M., Abduljabbar, T.S., Yelick, P., Beier, D., Joly, J.-S., Larhammar, D., Rosa, F., Westerfield, M., Zon, L.I., Johnson, S.L., and Talbot, W.S.	Vertebrate genome evolution and the zebrafish gene map	Nature Genetics	1998	18	345-349
ZDB-PUB-980415-7	9507106	Makita, R., Mizuno, T., Koshida, S., Kuroiwa, A., and Takeda, H.	Zebrafish wnt11: pattern and regulation of the expression by the yolk cell and no tail activity	Mechanisms of Development	1998	71	165-176
ZDB-PUB-980421-9	9463356	Serbedzija, G.N., Chen, J.-N., and Fishman, M.C.	Regulation in the heart field of zebrafish	Development (Cambridge, England)	1998	125	1095-1101
ZDB-PUB-980601-11	9550728	Koshida, S., Shinya, M., Mizuno, T., Kuroiwa, A., and Takeda, H.	Initial anteroposterior pattern of the zebrafish central nervous system is determined by differential competence of the epiblast	Development (Cambridge, England)	1998	125	1957-1966
ZDB-PUB-980601-13	9502721	Amacher, S.L. and Kimmel, C.B.	Promoting notochord fate and repressing muscle development in zebrafish axial mesoderm	Development (Cambridge, England)	1998	125	1397-1406
ZDB-PUB-980812-1	9694799	Yamanaka, Y., Mizuno, T., Sasai, Y., Kishi, M., Takeda, H., Kim, C.-H., Hibi, M., and Hirano, T.	A novel homeobox gene, dharma, can induce the organizer in a non-cell-autonomous manner	Genes & Development	1998	12	2345-2353
ZDB-PUB-980820-3	9693141	Griffin, K.J.P., Amacher, S.L., Kimmel, C.B., and Kimelman, D.	Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes	Development (Cambridge, England)	1998	125	3379-3388
ZDB-PUB-980902-1	9655819	Kobayashi, M., Toyama, R., Takeda, H., Dawid, I.B., and Kawakami, K.	Overexpression of the forebrain-specific homeobox gene six3 induces rostral forebrain enlargement in zebrafish	Development (Cambridge, England)	1998	125	2973-2982
ZDB-PUB-980903-5	9698446	Rebagliati, M.R., Toyama, R., Fricke, C., Haffter, P., and Dawid, I.B.	Zebrafish nodal-related genes are implicated in axial patterning and establishing left-right asymmetry	Developmental Biology	1998	199	261-272
ZDB-PUB-981006-5	9740662	Goldstein, A.M. and Fishman, M.C.	Notochord regulates cardiac lineage in zebrafish embryos	Developmental Biology	1998	201	247-252
ZDB-PUB-990105-8	9778500	Grinblat, Y., Gamse, J., Patel, M., and Sive, H.	Determination of the zebrafish forebrain: induction and patterning	Development (Cambridge, England)	1998	125	4403-4416
ZDB-PUB-990106-18	9858695	Shanmugalingam, S. and Wilson, S.W.	Isolation, expression and regulation of a zebrafish paraxis homologue	Mechanisms of Development	1998	78	85-89
ZDB-PUB-990106-23	9847237	Thisse, C. and Thisse, B.	Antivin, a novel and divergent member of the TGFß superfamily, negatively regulates mesoderm induction	Development (Cambridge, England)	1999	126	229-240
ZDB-PUB-990106-28	9834197	Nikaido, M., Tada, M., Takeda, H., Kuroiwa, A., and Ueno, N.	In vivo analysis using variants of zebrafish BMPR-IA: range of action and involvement of BMP in ectoderm patterning	Development (Cambridge, England)	1999	126	181-190
ZDB-PUB-990107-15	9727832	Read, E.M., Rodaway, A.R., Neave, B., Brandon, N., Holder, N., Patient, R.K., and Walmsley, M.E.	Evidence for non-axial A/P patterning in the nonneural ectoderm of Xenopus and zebrafish pregastrula embryos	The International journal of developmental biology	1998	42	763-774
ZDB-PUB-990107-20	9675051	Lauderdale, J.D., Pasquali, S.K., Fazel, R., van Eeden, F.J., Schauerte, H.E., Haffter, P., and Kuwada, J.Y.	Regulation of netrin-1a expression by hedgehog proteins	Molecular and cellular neurosciences	1998	11	194-205
ZDB-PUB-990119-19	9882476	Erter, C.E., Solnica-Krezel, L., and Wright, C.V.E.	Zebrafish nodal-related 2 encodes an early mesendodermal inducer signaling from the extraembryonic yolk syncytial layer	Developmental Biology	1998	204	361-372
ZDB-PUB-990119-20	9882485	Bauer, H., Meier, A., Hild, M., Stachel, S., Economides, A., Hazelett, D., Harland, R.M., and Hammerschmidt, M.	Follistatin and Noggin are excluded from the zebrafish organizer	Developmental Biology	1998	204	488-507
ZDB-PUB-990126-1	9918698	Mendonsa, E.S. and Riley, B.B.	Genetic analysis of tissue interactions required for otic placode induction in the zebrafish	Developmental Biology	1999	206	100-112
ZDB-PUB-990210-17	10349616	Joore, J., Van de Water, S., Betist, M., Van den Eijnden-van Raaij A., and Zivkovic, D.	Protein kinase A is involved in the induction of early mesodermal marker genes by activin	Mechanisms of Development	1998	79	5-15
ZDB-PUB-990218-5	9914418	Sumoy, L., Kiefer, J., and Kimelman, D.	Conservation of intracellular Wnt signaling components in dorsal-ventral axis formation in zebrafish	Development genes and evolution	1999	209	48-58
ZDB-PUB-990302-45	10074451	Appel, B., Fritz, A., Westerfield, M., Grunwald, D.J., Eisen, J.S., and Riley, B.B.	Delta-mediated specification of midline cell fates in zebrafish embryos	Current biology : CB	1999	9	247-256
ZDB-PUB-990302-47	9986732	Martin, C.C., Laforest, L., Akimenko, M.-A., and Ekker, M.	A role for DNA methylation in gastrulation and somite patterning	Developmental Biology	1999	206	189-205
ZDB-PUB-990416-1	9012495	Renucci, A., Lemarchandel, V., and Rosa, F.	An activated form of type I serine/threonine kinase receptor TARAM-A reveals a specific signalling pathway involved in fish head organiser formation	Development (Cambridge, England)	1996	122	3735-3743
ZDB-PUB-990507-1	10199408	Gritsman, K., Zhang, J., Cheng, S., Heckscher, E., Talbot, W.S., and Schier, A.F.	The EGF-CFC protein one-eyed pinhead is essential for nodal signaling	Cell	1999	97(1)	121-132
ZDB-PUB-990507-7	10207156	Gates, M.A., Kim, L., Egan, E.S., Cardozo, T., Sirotkin, H.I., Dougan, S.T., Lashkari, D., Abagyan, R., Schier, A.F., and Talbot, W.S.	A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences	Genome research	1999	9(4)	334-347
ZDB-PUB-990511-18	10068636	Fekany, K., Yamanaka, Y., Leung, T., Sirotkin, H.I., Topczewski, J., Gates, M.A., Hibi, M., Renucci, A., Stemple, D., Radbill, A., Schier, A.F., Driever, W., Hirano, T., Talbot, W.S., and Solnica-Krezel, L.	The zebrafish bozozok locus encodes Dharma, a homeodomain protein essential for induction of gastrula organizer and dorsoanterior embryonic structures	Development (Cambridge, England)	1999	126	1427-1438
ZDB-PUB-990525-5	10331981	Dheen, T., Sleptsova-Friedrich, I., Xu, Y., Clark, M., Lehrach, H., Gong, Z., and Korzh, V.	Zebrafish tbx-c functions during formation of midline structures	Development (Cambridge, England)	1999	126(12)	2703-2713
ZDB-PUB-990607-10	10357891	Schilling, T.F., Concordet, J.-P., and Ingham, P.W.	Regulation of left-right asymmetries in the zebrafish by Shh and BMP4	Developmental Biology	1999	210(2)	277-287
ZDB-PUB-990628-11	10375514	Bisgrove, B.W., Essner, J.J., and Yost, H.J.	Regulation of midline development by antagonism of lefty and nodal signaling	Development (Cambridge, England)	1999	126(14)	3253-3262
ZDB-PUB-990628-12	10375499	Rodaway, A., Takeda, H., Koshida, S., Broadbent, J., Price, B., Smith, J.C., Patient, R., and Holder, N.	Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-ß; family signals and discrimination of mesoderm and endoderm by FGF	Development (Cambridge, England)	1999	126(14)	3067-3078
ZDB-PUB-990628-19	10364427	Lele, Z., Hartson, S.D., Martin, C.C., Whitesell, L., Matts, R.L., and Krone, P.H.	Disruption of zebrafish somite development by pharmacologic inhibition of hsp90	Developmental Biology	1999	210(1)	56-70
ZDB-PUB-990628-29	10330484	Mizuno, T., Yamaha, E., Kuroiwa, A., and Takeda, H.	Removal of vegetal yolk causes dorsal deficencies and impairs dorsal-inducing ability of the yolk cell in zebrafish	Mechanisms of Development	1999	81(1-2)	51-63
ZDB-PUB-990628-7	10381569	Oates, A.C., Lackmann, M., Power, M.A., Brennan, C., Smith, F.M., Do, C., Evans, B., Holder, N., and Boyd, A.W.	An early developmental role for Eph-ephrin interaction during vertebrate gastrulation	Mechanisms of Development	1999	83(1-2)	77-94
ZDB-PUB-990824-13	10457007	Artinger, K.B., Chitnis, A.B., Mercola, M., and Driever, W.	Zebrafish narrowminded suggests a genetic link between formation of neural crest and primary sensory neurons	Development (Cambridge, England)	1999	126(18)	3969-3979
ZDB-PUB-990824-26	10415354	Vogel, A.M. and Gerster, T.	Promoter activity of the zebrafish bhikhari retroelement requires an intact activin signaling pathway	Mechanisms of Development	1999	85(1-2)	133-146
ZDB-PUB-990824-27	10415355	Rohr, K.B., Schulte-Merker, S., and Tautz, D.	Zebrafish zic1 expression in brain and somites is affected by BMP and hedgehog signalling	Mechanisms of Development	1999	85(1-2)	147-159
ZDB-PUB-990824-38	10446262	König, C., Yan, Y.L., Postlethwait, J., Wendler, S., and Campos-Ortega, J.A.	A recessive mutation leading to vertebral ankylosis in zebrafish is associated with amino acid alterations in the homologue of the human membrane-associated guanylate kinase DLG3	Mechanisms of Development	1999	86(1-2)	17-28
ZDB-PUB-991014-1	10486270	Wargelius, A., Ellingsen, S., and Fjose, A.	Double-stranded RNA induces specific developmental defects in zebrafish embryos	Biochemical and Biophysical Research Communications	1999	263(1)	156-161
ZDB-PUB-991102-11	10545242	Alexander, J., Rothenberg, M., Henry, G.L., and Stainier, D.Y.R.	casanova plays an early and essential role in endoderm formation in zebrafish	Developmental Biology	1999	215(2)	343-357
ZDB-PUB-991102-17	10529416	Barth, K.A., Kishimoto, Y., Rohr, K.B., Seydler, C., Schulte-Merker, S., and Wilson, S.W.	Bmp activity establishes a gradient of positional information throughout the entire neural plate	Development (Cambridge, England)	1999	126(22)	4977-4987