ZDB-PUB-030312-6	12617808	Blasiole, B., Canfield, V., Degrave, A., Thisse, C., Thisse, B., Rajarao, J., and Levenson, R.	RETRACTED. Cloning, mapping, and developmental expression of a sixth zebrafish Na,K-ATPase alpha1 subunit gene (atp1a1a.5)	Gene Expression Patterns	2002	2(3-4)	243-246	
ZDB-PUB-030312-3	12617801	Kawahara, A. and Dawid, I.B.	Developmental expression of zebrafish emx1 during early embryogenesis	Gene Expression Patterns	2002	2(3-4)	201-206	
ZDB-PUB-030716-15	12799084	Haftek, Z., Morvan-Dubois, G., Thisse, B., Thisse, C., Garrone, R., and Le Guellec, D.	Sequence and embryonic expression of collagen XVIII NC1 domain (endostatin) in the zebrafish	Gene Expression Patterns	2003	3(3)	351-354	
ZDB-PUB-030716-18	12799078	Delaunay, F., Thisse, C., Thisse, B., and Laudet, V.	Differential regulation of Period 2 and Period 3 expression during development of the zebrafish circadian clock	Gene Expression Patterns	2003	3(3)	319-324	
ZDB-PUB-030919-5	12972000	Kochilas, L.K., Potluri, V., Gitler, A., Balasubramanian, K., and Chin, A.J.	Cloning and characterization of zebrafish tbx1	Gene Expression Patterns	2003	3(5)	645-651	
ZDB-PUB-031008-1	12617810	Bellipanni, G., Rink, E., and Bally-Cuif, L.	RETRACTED. Cloning of two tryptophan hydroxylase genes expressed in the diencephalon of the developing zebrafish brain	Gene Expression Patterns	2002	2(3-4)	251-256	
ZDB-PUB-031204-12	14643683	Zirger, J.M., Beattie, C.E., McKay, D.B., and Thomas Boyd, R.	Cloning and expression of zebrafish neuronal nicotinic acetylcholine receptors	Gene Expression Patterns	2003	3(6)	747-754	
ZDB-PUB-040113-13	14678828	Dufourcq, P., Rastegar, S., Strähle, U., and Blader, P.	Parapineal specific expression of gfi1 in the zebrafish epithalamus	Gene Expression Patterns	2004	4(1)	53-57	
ZDB-PUB-040402-7	15053986	Toyama, R., Gomez, D.M., Mana, M.D., and Dawid, I.B.	Sequence relationships and expression patterns of zebrafish zic2 and zic5 genes	Gene Expression Patterns	2004	4(3)	345-350	
ZDB-PUB-040609-7	15183305	Bierie, B., Edwin, M., Joseph Melenhorst, J., and Hennighausen, L.	The proliferation associated nuclear element (PANE1) is conserved between mammals and fish and preferentially expressed in activated lymphoid cells	Gene Expression Patterns	2004	4(4)	389-395	
ZDB-PUB-040721-4	15261833	Elmasri, H., Liedtke, D., Lücking, G., Volff, J.N., Gessler, M., and Winkler, C.	her7 and hey1, but not lunatic fringe show dynamic expression during somitogenesis in medaka (Oryzias latipes)	Gene Expression Patterns	2004	4(5)	553-559	
ZDB-PUB-041111-18	15533813	Plouhinec, J.L., Granier, C., Le Mentec, C., Lawson, K.A., Saberan-Djoneidi, D., Aghion, J., Shi, D.L., Collignon, J., and Mazan, S.	Identification of the mammalian Not gene via a phylogenomic approach	Gene Expression Patterns	2004	5(1)	11-22	
ZDB-PUB-041111-20	15533823	Loeb-Hennard, C., Cousin, X., Prengel, I., and Kremmer, E.	Cloning and expression pattern of vat-1 homolog gene in zebrafish	Gene Expression Patterns	2004	5(1)	91-96	
ZDB-PUB-041130-13	15567725	Bateman, M.J., Cornell, R., d'Alencon, C., and Sandra, A.	Expression of the zebrafish Staufen gene in the embryo and adult	Gene Expression Patterns	2004	5(2)	273-278	
ZDB-PUB-050125-10	15661639	Loeb-Hennard, C., Kremmer, E., and Bally-Cuif, L.	Prominent transcription of zebrafish N-myc (nmyc1) in tectal and retinal growth zones during embryonic and early larval development	Gene Expression Patterns	2005	5(3)	341-347	
ZDB-PUB-050125-13	15661651	Hirano, M., Murata, T., Furushima, K., Kiyonari, H., Nakamura, M., Suda, Y., and Aizawa, S.	cfm is a novel gene uniquely expressed in developing forebrain and midbrain, but its null mutant exhibits no obvious phenotype	Gene Expression Patterns	2005	5(3)	439-444	
ZDB-PUB-050308-8	15749085	Kedinger, V., Alpy, F., Tomasetto, C., Thisse, C., Thisse, B., and Rio, M.C.	Spatial and temporal distribution of the traf4 genes during zebrafish development	Gene Expression Patterns	2005	5(4)	545-552	
ZDB-PUB-050603-11	15922676	Schweitzer, J., Becker, C.G., Schachner, M., and Becker, T.	Expression of collapsin response mediator proteins in the nervous system of embryonic zebrafish	Gene Expression Patterns	2005	5(6)	809-816	
ZDB-PUB-050610-2	15939377	Stevens, C.B., and Halloran, M.C.	Developmental expression of sema3G, a novel zebrafish semaphorin	Gene Expression Patterns	2005	5(5)	647-653	
ZDB-PUB-050920-9	16168718	Christie, T.L., Starovic-Subota, O., and Childs, S.	Zebrafish collapsin response mediator protein (CRMP)-2 is expressed in developing neurons	Gene Expression Patterns	2006	6(2)	193-200	
ZDB-PUB-060207-14	16455309	Hale, L.A., Tallafuss, A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H.	Characterization of the retinoic acid receptor genes raraa, rarab and rarg during zebrafish development	Gene Expression Patterns	2006	6(5)	546-555	
ZDB-PUB-060207-4	16446122	Wang, Y.H., Chen, Y.H., Lin, Y.J., and Tsai, H.J.	Spatiotemporal expression of zebrafish keratin 18 during early embryogenesis and the establishment of a keratin 18:RFP transgenic line	Gene Expression Patterns	2006	6(4)	335-339	
ZDB-PUB-060207-7	16448861	Colombo, A., Reig, G., Mione, M., and Concha, M.L.	Zebrafish BarH-like genes define discrete neural domains in the early embryo	Gene Expression Patterns	2006	6(4)	347-352	
ZDB-PUB-060210-8	16458084	Zhou, W., Shirabe, K., and Kuwada, J.Y.	Molecular cloning and expression of two small leucine-rich proteoglycan (SLRP) genes, dspg3l and optcl, in zebrafish	Gene Expression Patterns	2006	6(5)	482-488	
ZDB-PUB-060302-8	16487754	Lukowski, C.M., Ritzel, R.G., and Waskiewicz, A.J.	Expression of two insm1-like genes in the developing zebrafish nervous system	Gene Expression Patterns	2006	6(7)	711-718	
ZDB-PUB-060323-8	16531124	Nichane, M., Van Campenhout, C., Pendeville, H., Voz, M.L., and Bellefroid, E.J.	The Na(+)/PO(4) cotransporter SLC20A1 gene labels distinct restricted subdomains of the developing pronephros in Xenopus and zebrafish embryos	Gene Expression Patterns	2006	6(7)	667-672	
ZDB-PUB-060517-8	16678499	Yao, J., Wang, L., Chen, L., Zhang, S., Zhao, Q., Jia, W., and Xue, J.	Cloning and developmental expression of the DEC1 ortholog gene in zebrafish	Gene Expression Patterns	2006	6(8)	919-927	
ZDB-PUB-060616-45	16765104	Bernardos, R.L., and Raymond, P.A.	GFAP transgenic zebrafish	Gene Expression Patterns	2006	6(8)	1007-1013	
ZDB-PUB-060616-53	16774848	Krens, S.F., He, S., Spaink, H.P., and Snaar-Jagalska, B.E.	Characterization and expression patterns of the MAPK family in zebrafish	Gene Expression Patterns	2006	6(8)	1019-1026	
ZDB-PUB-060710-5	16815100	Yoong, S., O'connell, B., Soanes, A., Crowhurst, M.O., Lieschke, G.J., and Ward, A.C.	Characterization of the zebrafish matrix metalloproteinase 9 gene and its developmental expression pattern	Gene Expression Patterns	2007	7(1-2)	39-46	
ZDB-PUB-060825-13	16920036	Aihara, Y., Yasuoka, A., Yoshida, Y., Ohmoto, M., Shimizu-Ibuka, A., Misaka, T., Furutani-Seiki, M., Matsumoto, I., and Abe, K.	Transgenic labeling of taste receptor cells in model fish under the control of the 5'-upstream region of medaka phospholipase C-beta 2 gene	Gene Expression Patterns	2007	7(1-2)	149-157	
ZDB-PUB-061108-22	17085078	Tucker, B., Hepperle, C., Kortschak, D., Rainbird, B., Wells, S., Oates, A.C., and   Lardelli, M.	Zebrafish Angiotensin II Receptor-like 1a (agtrl1a) is expressed in migrating hypoblast, vasculature, and in multiple embryonic epithelia	Gene Expression Patterns	2007	7(3)	258-265	
ZDB-PUB-061227-4	17127101	Besser, J., Bagowski, C.P., Salas-Vidal, E., van Hemert, M.J., Bussmann, J., and Spaink, H.P.	Expression analysis of the family of 14-3-3 proteins in zebrafish development	Gene Expression Patterns	2007	7(4)	511-520	
ZDB-PUB-061227-5	17127102	Kitambi, S.S., and Hauptmann, G.	The zebrafish orphan nuclear receptor genes nr2e1 and nr2e3 are expressed in developing eye and forebrain	Gene Expression Patterns	2007	7(4)	521-528	
ZDB-PUB-070210-23	17239665	Epting, D., Vorwerk, S., Hageman, A., and Meyer, D.	Expression of rasgef1b in zebrafish	Gene Expression Patterns	2007	7(4)	389-395	
ZDB-PUB-070303-14	17300993	Ott, E.B., Te Velthuis, A.J., and Bagowski, C.P.	Comparative analysis of splice form-specific expression of LIM Kinases during zebrafish development	Gene Expression Patterns	2007	7(5)	620-629	
ZDB-PUB-070303-22	17306630	Chen, H., Leung, T., Giger, K.E., Stauffer, A.M., Humbert, J.E., Sinha, S., Horstick, E.J., Hansen, C.A., and Robishaw, J.D.	Expression of the G protein gammaT1 subunit during zebrafish development	Gene Expression Patterns	2007	7(5)	574-583	
ZDB-PUB-070726-14	17632043	Kiener, T.K., Sleptsova-Friedrich, I., and Hunziker, W.	Identification, tissue distribution and developmental expression of tjp1/zo-1, tjp2/zo-2 and tjp3/zo-3 in the zebrafish, Danio rerio	Gene Expression Patterns	2007	7(7)	767-776	
ZDB-PUB-070726-25	17638597	Hinits, Y., Osborn, D.P., Carvajal, J.J., Rigby, P.W., and Hughes, S.M.	Mrf4 (myf6) is dynamically expressed in differentiated zebrafish skeletal muscle	Gene Expression Patterns	2007	7(7)	738-745	
ZDB-PUB-071219-23	18078791	Sittaramane, V., and Chandrasekhar, A.	Expression of unconventional myosin genes during neuronal development in zebrafish	Gene Expression Patterns	2008	8(3)	161-170	
ZDB-PUB-080124-13	18178530	Pittlik, S., Domingues, S., Meyer, A., and Begemann, G.	Expression of zebrafish aldh1a3 (raldh3) and absence of aldh1a1 in teleosts	Gene Expression Patterns	2008	8(3)	141-147	
ZDB-PUB-080226-4	18243062	Liu, J., and Lessman, C.A.	Changes of gamma-tubulin expression and distribution in the zebrafish (Danio rerio) ovary, oocyte and embryo	Gene Expression Patterns	2008	8(4)	237-247	
ZDB-PUB-080915-14	18783736	Snow, C.J., and Henry, C.A.	Dynamic formation of microenvironments at the myotendinous junction correlates with muscle fiber morphogenesis in zebrafish	Gene Expression Patterns	2009	9(1)	37-42	
ZDB-PUB-081218-13	19070682	Boehmler, W., Petko, J., Woll, M., Frey, C., Thisse, B., Thisse, C., Canfield, V.A., and Levenson, R.	Identification of zebrafish A2 adenosine receptors and expression in developing embryos	Gene Expression Patterns	2009	9(3)	144-151	
ZDB-PUB-090204-13	19166982	Toro, S., Wegner, J., Muller, M., Westerfield, M., and Varga, Z.M.	Identification of differentially expressed genes in the zebrafish hypothalamic-pituitary axis	Gene Expression Patterns	2009	9(4)	200-208	
ZDB-PUB-090716-22	19595791	Sisson, B.E., and Topczewski, J.	Expression of five frizzleds during zebrafish craniofacial development	Gene Expression Patterns	2009	9(7)	520-527	
ZDB-PUB-091101-22	19861176	Gebauer, J.M., Karlsen, K.R., Neiss, W.F., Paulsson, M., and Wagener, R.	Expression of the AMACO (VWA2 protein) ortholog in zebrafish	Gene Expression Patterns	2010	10(1)	53-59	
ZDB-PUB-100126-3	20085825	McDermott, B.M., Asai, Y., Baucom, J.M., Jani, S.D., Castellanos, Y., Gomez, G., McClintock, J.M., and Hudspeth, A.J.	Transgenic Labeling of Hair Cells in the Zebrafish Acousticolateralis System	Gene Expression Patterns	2010	\ 	\ 	
ZDB-PUB-030221-1	12617811	Tan, C.-H., Chu, L.T., Weeraratne, S.D., Korzh, V., Lim, T.M., and Gong, Z.	RETRACTED. Ziwi, the zebrafish homologue of the Drosophila piwi: co-localization with vasa at the embryonic genital ridge and gonad-specific expression in the adults	Gene Expression Patterns	2002	2	257-260	
ZDB-PUB-030312-4	12617802	Lane, M.E., Runko, A.P., Roy, N.M., and Sagerström, C.G.	RETRACTED. Dynamic expression and regulation by Fgf8 and Pou2 of the zebrafish LIM-only gene, lmo4	Gene Expression Patterns	2002	2(3-4)	207-211	
ZDB-PUB-030312-7	12617825	Nagaya, M., Inohaya, K. Imai, Y., and Kudo, A.	RETRACTED. Expression of zisp, a DHHC zinc finger gene, in somites and lens during zebrafish embryogenesis	Gene Expression Patterns	2002	2(3-4)	355-358	
ZDB-PUB-030716-16	12799081	Novince, Z.M., Azodi, E., Marrs, J.A., Raymond, P.A., and Liu, Q.	Cadherin expression in the inner ear of developing zebrafish	Gene Expression Patterns	2003	3(3)	337-339	
ZDB-PUB-030826-18	12915322	Thisse, C., Degrave, A., Kryukov, G.V., Gladyshev, V.N., Obrecht-Pflumio, S., Krol, A., Thisse, B., and Lescure, A.	Spatial and temporal expression patterns of selenoprotein genes during embryogenesis in zebrafish	Gene Expression Patterns	2003	3(4)	525-532	
ZDB-PUB-030826-20	12915313	Poon, K.L., Richardson, M., Lam, C.S., Khoo, H.E., and Korzh, V.	Expression pattern of neuronal nitric oxide synthase in embryonic zebrafish	Gene Expression Patterns	2003	3(4)	463-466	
ZDB-PUB-030919-6	12972001	Liu, Q., Ensign, R.D., and Azodi, E.	Cadherin-1, -2 and -4 expression in the cranial ganglia and lateral line system of developing zebrafish	Gene Expression Patterns	2003	3(5)	653-658	
ZDB-PUB-040113-11	14678833	Pinheiro, P., Gering, M., and Patient, R.	The basic helix-loop-helix transcription factor, Tal2, marks the lateral floor plate of the spinal cord in zebrafish	Gene Expression Patterns	2004	4(1)	85-92	
ZDB-PUB-040609-5	15183316	Bae, Y.K., Shimizu, T., Muraoka, O., Yabe, T., Hirata, T., Nojima, H., Hirano, T., and Hibi, M.	Expression of sax1/nkx1.2 and sax2/nkx1.1 in zebrafish	Gene Expression Patterns	2004	4(4)	481-486	
ZDB-PUB-040609-8	15183304	Liu, R.Z., Denovan-Wright, E.M., Degrave, A., Thisse, C., Thisse, B., and Wright, J.M.	Differential expression of duplicated genes for brain-type fatty acid-binding proteins (fabp7a and fabp7b) during early development of the CNS in zebrafish (Danio rerio)	Gene Expression Patterns	2004	4(4)	379-387	
ZDB-PUB-040721-5	15261834	Tingaud-Sequeira, A., André, M., Forgue, J., Barthe, C., and Babin, P.J.	Expression patterns of three estrogen receptor genes during zebrafish (Danio rerio) development: evidence for high expression in neuromasts	Gene Expression Patterns	2004	4(5)	561-568	
ZDB-PUB-041111-19	15533816	Adolf, B., Bellipanni, G., Huber, V., and Bally-Cuif, L.	atoh1.2 and beta3.1 are two new bHLH-encoding genes expressed in selective precursor cells of the zebrafish anterior hindbrain	Gene Expression Patterns	2004	5(1)	35-41	
ZDB-PUB-041111-21	15533825	Cheesman, S.E., and Eisen, J.S.	gsh1 demarcates hypothalamus and intermediate spinal cord in zebrafish	Gene Expression Patterns	2004	5(1)	107-112	
ZDB-PUB-041130-14	15567728	Crotwell, P.L., Sommervold, A.R., and Mabee, P.M.	Expression of bmp2a and bmp2b in late-stage zebrafish median fin development	Gene Expression Patterns	2004	5(2)	291-296	
ZDB-PUB-050125-11	15661642	Zhao, Q., Dobbs-McAuliffe, B., and Linney, E.	Expression of cyp26b1 during zebrafish early development	Gene Expression Patterns	2005	5(3)	363-369	
ZDB-PUB-050308-6	15749076	Down, M., Power, M., Smith, S.I., Ralston, K., Spanevello, M., Burns, G.F., and Boyd, A.W.	Cloning and expression of the large zebrafish protocadherin gene, Fat	Gene Expression Patterns	2005	5(4)	483-490	
ZDB-PUB-050610-3	15939378	Rodríguez-Marí, A., Yan, Y.L., Bremiller, R.A., Wilson, C., Cañestro, C., and Postlethwait, J.H.	Characterization and expression pattern of zebrafish anti-Mullerian hormone (amh) relative to sox9a, sox9b, and cyp19a1a, during gonad development	Gene Expression Patterns	2005	5(5)	655-667	
ZDB-PUB-050701-8	15979416	Gu, X., Xu, F., Wang, X., Gao, X., and Zhao, Q.	Molecular cloning and expression of a novel CYP26 gene (cyp26d1) during zebrafish early development	Gene Expression Patterns	2005	5(6)	733-739	
ZDB-PUB-051214-8	16326145	Lopez, M., Nica, G., Motte, P., Martial, J.A., Hammerschmidt, M., and Muller, M.	Expression of the somatolactin beta gene during zebrafish embryonic development	Gene Expression Patterns	2006	6(2)	156-161	
ZDB-PUB-060105-15	16378757	Pendeville, H., Peers, B., Kas, K., and Voz, M.L.	Cloning and embryonic expression of zebrafish PLAG genes	Gene Expression Patterns	2006	6(3)	267-276	
ZDB-PUB-060207-8	16448862	Tallafuss, A., Hale, L.A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H.	Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development	Gene Expression Patterns	2006	6(5)	556-565	
ZDB-PUB-060302-9	16488669	Liu, Q., Duff, R.J., Liu, B., Wilson, A.L., Babb-Clendenon, S.G., Francl, J., and Marrs, J.A.	Expression of cadherin10, a type II classic cadherin gene, in the nervous system of the embryonic zebrafish	Gene Expression Patterns	2006	74(6)	1016-1025	
ZDB-PUB-060412-4	16581310	Scemama, J.L., Vernon, J.L., and Stellwag, E.J.	Differential expression of hoxa2a and hoxa2b genes during striped bass embryonic development	Gene Expression Patterns	2006	843-848		
ZDB-PUB-060616-54	16774849	Liu, B., Joel Duff, R., Londraville, R.L., Marrs, J.A., and Liu, Q.	Cloning and expression analysis of cadherin7 in the central nervous system of the embryonic zebrafish	Gene Expression Patterns	2007	7(1-2)	15-22	
ZDB-PUB-060825-14	16920404	Nath, K., and Elinson, R.P.	RNA of AmVegT, the axolotl orthologue of the Xenopus meso-endodermal determinant, is not localized in the oocyte	Gene Expression Patterns	2007	7(1-2)	197-201	
ZDB-PUB-060927-8	16997637	Rojas, D.A., Perez-Munizaga, D.A., Centanin, L., Antonelli, M., Wappner, P., Allende, M.L., and Reyes, A.E.	Cloning of hif-1alpha and hif-2alpha and mRNA expression pattern during development in zebrafish	Gene Expression Patterns	2007	7(3)	339-345	
ZDB-PUB-061020-50	17045851	McCormick, L.J., Hutt, J.A., Hazan, J., Houart, C., and Cohen, J.	The homeodomain transcription factor drg11 is expressed in primary sensory neurons and their putative CNS targets during embryonic development of the zebrafish	Gene Expression Patterns	2007	7(3)	289-296	
ZDB-PUB-061031-10	17064968	Ernest, S., Guadagnini, S., Prevost, M.C., and Soussi-Yanicostas, N.	Localization of anosmin-1a and anosmin-1b in the inner ear and neuromasts of zebrafish	Gene Expression Patterns	2007	7(3)	274-281	
ZDB-PUB-061108-23	17085079	Tsutsumi, M., and Itoh, M.	Novel transcript nort is a downstream target gene of the Notch signaling pathway in zebrafish	Gene Expression Patterns	2007	793)	227-232	
ZDB-PUB-061227-38	17161658	Mangos, S., Liu, Y., and Drummond, I.A.	Dynamic expression of the osmosensory channel trpv4 in multiple developing organs in zebrafish	Gene Expression Patterns	2007	7(4)	480-484	
ZDB-PUB-061229-9	17175205	Shih, L.J., Lu, Y.F., Chen, Y.H., Lin, C.C., Chen, J.A., and Hwang, S.P.	Characterization of the agr2 gene, a homologue of X. laevis anterior gradient 2, from the zebrafish, Danio rerio	Gene Expression Patterns	2007	7(4)	452-460	
ZDB-PUB-070513-15	17482883	Drerup, C.M., Ahlgren, S.C., and Morris, J.A.	Expression profiles of ndel1a and ndel1b, two orthologs of the NudE-Like gene, in the zebrafish	Gene Expression Patterns	2007	7(6)	672-679	
ZDB-PUB-071009-16	17916448	Mann, C.J., Osborn, D.P., and Hughes, S.M.	Vestigial-like-2b (VITO-1b) and Tead-3a (Tef-5a) expression in zebrafish skeletal muscle, brain and notochord	Gene Expression Patterns	2007	7(8)	827-836	
ZDB-PUB-080227-16	18262854	Liang, D., Zhang, M., Bao, J., Zhang, L., Xu, X., Gao, X., and Zhao, Q	Expressions of Raldh3 and Raldh4 during zebrafish early development	Gene Expression Patterns	2008	8(4)	248-253	
ZDB-PUB-080408-13	18378501	Möller, C.C., Mangos, S., Drummond, I.A., and Reiser, J.	Expression of trpC1 and trpC6 orthologs in zebrafish	Gene Expression Patterns	2008	8(5)	291-296	
ZDB-PUB-080722-4	18620079	Mungpakdee, S., Seo, H.C., and Chourrout, D.	Spatio-temporal expression patterns of anterior Hox genes in Atlantic salmon (Salmo salar)	Gene Expression Patterns	2008	8(7-8)	508-514	
ZDB-PUB-080902-4	18723125	Suhr, S.T., Ramachandran, R., Fuller, C.L., Veldman, M.B., Byrd, C.A., and Goldman, D.	Highly-restricted, cell-specific expression of the simian CMV-IE promoter in transgenic zebrafish with age and after heat shock	Gene Expression Patterns	2009	9(1)	54-64	
ZDB-PUB-090310-27	19233319	Deguchi, T., Fujimori, K.E., Kawasaki, T., Ohgushi, H., and Yuba, S.	Molecular cloning and gene expression of the prox1a and prox1b genes in the medaka, Oryzias latipes	Gene Expression Patterns	2009	9(5)	341-347	
ZDB-PUB-090318-2	19272335	Burzynski, G.M., Delalande, J.M., and Shepherd, I.	Characterization of spatial and temporal expression pattern of SCG10 during zebrafish development	Gene Expression Patterns	2009	9(4)	231-237	
ZDB-PUB-090424-15	19379839	Zhao, X.F., Suh, C.S., Prat, C.R., Ellingsen, S., and Fjose, A.	Distinct expression of two foxg1 paralogues in zebrafish	Gene Expression Patterns	2009	9(5)	266-272	
ZDB-PUB-090616-61	19524703	Berberoglu, M.A., Dong, Z., Mueller, T., and Guo, S.	fezf2 expression delineates cells with proliferative potential and expressing markers of neural stem cells in the adult zebrafish brain	Gene Expression Patterns	2009	9(6)	411-422	
ZDB-PUB-090617-4	16168719	Eroshkin, F.M., Ermakova, G.V., Bayramov, A.V., and Zaraisky, A.G.	Multiple noggins in vertebrate genome: cloning and expression of noggin2 and noggin4 in Xenopus laevis	Gene Expression Patterns	2006	6(2)	180-186	
ZDB-PUB-090629-13	19540935	Hammond, K.L., and Whitfield, T.T.	Expression of zebrafish hip: response to Hedgehog signalling, comparison with ptc1 expression, and possible role in otic patterning	Gene Expression Patterns	2009	9(6)	391-396	
ZDB-PUB-090716-26	19602390	Fu, C.Y., Lee, H.C., and Tsai, H.J.	The Molecular Structures and Expression Patterns of Zebrafish Troponin I Genes	Gene Expression Patterns	2009	9(5)	348-356	
ZDB-PUB-090727-5	19616130	Liu, Q., Chen, Y., Pan, J.J., and Murakami, T.	Expression of protocadherin-9 and protocadherin-17 in the nervous system of the embryonic zebrafish	Gene Expression Patterns	2009	9(7)	490-496	
ZDB-PUB-090914-18	19723591	Mönnich, M., Banks, S., Eccles, M., Dickinson, E., and Horsfield, J.	Expression of cohesin and condensin genes during zebrafish development supports a non-proliferative role for cohesin	Gene Expression Patterns	2009	9(8)	586-594	
ZDB-PUB-091204-11	19925885	Albalat, R., Baquero, M., and Minguillón, C.	Identification and characterisation of the developmental expression pattern of tbx5b, a novel tbx5 gene in zebrafish	Gene Expression Patterns	2010	10(1)	24-30	
ZDB-PUB-030128-1	12617856	Hsiao, C.-D., Tsai, W.-Y., and Tsai, H.-J.	RETRACTED. Isolation and expression of two zebrafish homologues of parvalbumin genes related to chicken CPV3 and mammalian oncomodulin	Gene Expression Patterns	2002	2	163-168	
ZDB-PUB-030304-2	12609611	Unger, J.L. and Glasgow, E.	Expression of isotocin-neurophysin mRNA in developing zebrafish	Gene Expression Patterns	2003	3(1)	105-108	
ZDB-PUB-030312-2	12617798	Tonou-Fujimori, N., Takahashi, M., Onodera, H., Kikuta, H., Koshida, S., Takeda, H., and Yamasu, K.	RETRACTED. Expression of the FGF receptor 2 gene (fgfr2) during embryogenesis in the zebrafish Danio rerio	Gene Expression Patterns	2002	2(3-4)	183-188	
ZDB-PUB-030312-5	12617804	Hsu, H.-J., Hsiao, P., Kuo, M.W., and Chung, B.-C.	Expression of zebrafish cyp11a1 as a maternal transcript and in yolk syncytial layer	Gene Expression Patterns	2002	2(3-4)	219-222	
ZDB-PUB-030514-4	12711545	Topczewska, J.M., Topczewski, J., Szostak, A., Solnica-Krezel, L., and Hogan, B.L.M.	Developmentally regulated expression of two members of the Nrarp family in zebrafish	Gene Expression Patterns	2003	3(2)	169-171	
ZDB-PUB-030716-17	12799080	Hirate, Y., Okamoto, H. and Yamasu, K.	Structure of the zebrafish fasciclin I-related extracellular matrix protein (betaig-h3) and its characteristic expression during embryogenesis	Gene Expression Patterns	2003	3(3)	331-336	
ZDB-PUB-030826-19	12915316	Ro, H., Kim, K.E., Huh, T.-L., Lee, S.K., and Rhee, M.	Expression pattern of Siaz gene during the zebrafish embryonic development	Gene Expression Patterns	2003	3(4)	483-488	
ZDB-PUB-040113-12	14678830	Gopinath, A., Tseng, L.A., and Whitlock, K.E.	Temporal and spatial expression of gonadotropin releasing hormone (GnRH) in the brain of developing zebrafish (Danio rerio)	Gene Expression Patterns	2004	4(1)	65-70	
ZDB-PUB-040405-2	15053985	Jessen, J.R., and Solnica-Krezel, L.	Identification and developmental expression pattern of van gogh-like 1, a second zebrafish strabismus homologue	Gene Expression Patterns	2004	4(3)	339-344	
ZDB-PUB-040601-7	15161099	Oehlmann, V.D., Berger, S., Sterner, C., and Korsching, S.I.	Zebrafish beta tubulin 1 expression is limited to the nervous system throughout development, and in the adult brain is restricted to a subset of proliferative regions	Gene Expression Patterns	2002	4(2)	191-198	
ZDB-PUB-040609-10	15183302	Bovenkamp, D.E., Goishi, K., Bahary, N., Davidson, A.J., Zhou, Y., Becker, T., Becker, C.G., Zon, L.I., and Klagsbrun, M.	Expression and mapping of duplicate neuropilin-1 and neuropilin-2 genes in developing zebrafish	Gene Expression Patterns	2004	4(4)	361-370	
ZDB-PUB-040609-6	15183311	Martinelli, C., and Spring, J.	Expression pattern of the homeobox gene Not in the basal metazoan Trichoplax adhaerens	Gene Expression Patterns	2004	4(4)	443-447	
ZDB-PUB-040609-9	15183303	Yu, H.H., Houart, C., and Moens, C.B.	Cloning and embryonic expression of zebrafish neuropilin genes	Gene Expression Patterns	2004	4(4)	371-378	
ZDB-PUB-040721-6	15261836	Flores, M.V., Tsang, V.W., Hu, W., Kalev-Zylinska, M., Postlethwait, J., Crosier, P., Crosier, K., and Fisher, S.	Duplicate zebrafish runx2 orthologues are expressed in developing skeletal elements	Gene Expression Patterns	2004	4(5)	573-581	
ZDB-PUB-041130-12	15567724	Pozzoli, O., Gilardelli, C.N., Sordino, P., Doniselli, S., Lamia, C.L., and Cotelli, F.	Identification and expression pattern of mago nashi during zebrafish development	Gene Expression Patterns	2004	5(2)	265-272	
ZDB-PUB-041207-1	15567712	Murata, T., Furushima, K., Hirano, M., Kiyonari, H., Nakamura, M., Suda, Y., and Aizawa, S.	ang is a novel gene expressed in early neuroectoderm, but its null mutant exhibits no obvious phenotype	Gene Expression Patterns	2004	5(2)	171-178	
ZDB-PUB-050125-12	15661643	Sharma, M.K., Saxena, V., Liu, R.Z., Thisse, C., Thisse, B., Denovan-Wright, E.M., and Wright, J.M.	Differential expression of the duplicated cellular retinoic acid-binding protein 2 genes (crabp2a and crabp2b) during zebrafish embryonic development	Gene Expression Patterns	2005	5(3)	371-379	
ZDB-PUB-050308-7	15749084	Nicoli, S., Gilardelli, C.N., Pozzoli, O., Presta, M., and Cotelli, F.	Regulated expression pattern of gremlin during zebrafish development	Gene Expression Patterns	2005	5(4)	539-544	
ZDB-PUB-050610-1	15939375	Ben, J., Jabs, E.W., and Chong, S.S.	Genomic, cDNA and embryonic expression analysis of zebrafish IRF6, the gene mutated in the human oral clefting disorders Van der Woude and popliteal pterygium syndromes	Gene Expression Patterns	2005	5(5)	629-638	
ZDB-PUB-050610-4	15939380	Kubota, Y., Oike, Y., Satoh, S., Tabata, Y., Niikura, Y., Morisada, T., Akao, M., Urano, T., Ito, Y., Miyamoto, T., Watanabe, S., and Suda, T.	Isolation and expression patterns of genes for three angiopoietin-like proteins, Angptl1, 2 and 6 in zebrafish	Gene Expression Patterns	2005	5(5)	679-685	
ZDB-PUB-050920-10	16168720	Hashimoto, Y., Suzuki, H., Kageyama, Y., Yasuda, K., and Inoue, K.	Bruno-like protein is localized to zebrafish germ plasm during the early cleavage stages	Gene Expression Patterns	2006	6(2)	201-205	
ZDB-PUB-051214-9	16326146	Mao, L., and Shelden, E.A.	Developmentally regulated gene expression of the small heat shock protein Hsp27 in zebrafish embryos	Gene Expression Patterns	2006	6(2)	127-133	
ZDB-PUB-060210-7	16458082	Gavaia, P.J., Simes, D.C., Ortiz-Delgado, J.B., Viegas, C.S., Pinto, J.P., Kelsh, R.N., Sarasquete, M.C., and Cancela, M.L.	Osteocalcin and matrix Gla protein in zebrafish (Danio rerio) and Senegal sole (Solea senegalensis): Comparative gene and protein expression during larval development through adulthood	Gene Expression Patterns	2006	6(6)	637-652	
ZDB-PUB-060313-6	16504595	Tendeng, C., and Houart, C.	Cloning and embryonic expression of five distinct sfrp genes in the zebrafish Danio rerio	Gene Expression Patterns	2006	6(8)	761-771	
ZDB-PUB-060315-1	16516559	Roussigne, M., and Blader, P.	Divergence in regulation of the PEA3 family of ETS transcription factors	Gene Expression Patterns	2006	6(8)	777-782	
ZDB-PUB-060323-26	16545988	Pezeron, G., Anselme, I., Laplante, M., Ellingsen, S., Becker, T.S., Rosa, F.M., Charnay, P., Schneider-Maunoury, S., Mourrain, P., and Ghislain, J.	Duplicate sfrp1 genes in zebrafish: sfrp1a is dynamically expressed in the developing central nervous system, gut and lateral line	Gene Expression Patterns	2006	6(8)	835-842	
ZDB-PUB-060616-25	16750657	Mann, C.J., Hinits, Y., and Hughes, S.M.	Comparison of neurolin (ALCAM) and neurolin-like cell adhesion molecule (NLCAM) expression in zebrafish	Gene Expression Patterns	2006	6(8)	952-963	
ZDB-PUB-060719-15	16831571	Soroldoni, D., Bajoghli, B., Aghaallaei, N., Czerny, T.	Dynamic expression pattern of Nodal-related genes during left-right development in medaka	Gene Expression Patterns	2007	7(1-2)	93-101	
ZDB-PUB-061020-37	17035100	Wang, H., Lee, E.M., Sperber, S.M., Lin, S., Ekker, M., and Long, Q.	Isolation and expression of zebrafish zinc-finger transcription factor gene tsh1	Gene Expression Patterns	2007	7(3)	318-322	
ZDB-PUB-061020-49	17045553	Te Velthuis, A.J., Ott, E.B., Marques, I.J., and Bagowski, C.P.	Gene expression patterns of the ALP family during zebrafish development	Gene Expression Patterns	2007	7(3)	297-305	
ZDB-PUB-061021-4	17049928	Kyuno, J.I., and Jones, E.A.	GDNF expression during Xenopus development	Gene Expression Patterns	2007	7(3)	313-317	
ZDB-PUB-070303-24	17307034	Guner, B., and Karlstrom, R.O.	Cloning of zebrafish nkx6.2 and a comprehensive analysis of the conserved transcriptional response to Hedgehog/Gli signaling in the zebrafish neural tube	Gene Expression Patterns	2007	7(5)	596-605	
ZDB-PUB-070330-29	17374568	Flores, M.V., Hall, C., Jury, A., Crosier, K., and Crosier, P.	The zebrafish retinoid-related orphan receptor (ror) gene family	Gene Expression Patterns	2007	7(5)	535-543	
ZDB-PUB-070427-15	17433792	Herpin, A., Lelong, C., Becker, T., Favrel, P., and Cunningham, C.	A tolloid homologue from the Pacific oyster Crassostrea gigas	Gene Expression Patterns	2007	7(6)	700-708	
ZDB-PUB-070614-7	17521969	Londin, E.R., Mentzer, L., Gates, K.P., and Sirotkin, H.I.	Expression and regulation of the zinc finger transcription factor Churchill during zebrafish development	Gene Expression Patterns	2007	7(6)	645-650	
ZDB-PUB-070813-13	17681890	Nakaya, N., and Tomarev, S.	Expression patterns of alternative transcripts of the zebrafish olfactomedin 1 genes	Gene Expression Patterns	2007	7(7)	723-729	
ZDB-PUB-071129-13	18042440	Böhm, S., Jin, H., Hughes, S.M., Roberts, R.G., and Hinits, Y.	Dystrobrevin and dystrophin family gene expression in zebrafish	Gene Expression Patterns	2008	8(2)	71-78	
ZDB-PUB-071219-4	18068546	Ouyang, M., Garnett, A.T., Han, T.M., Hama, K., Lee, A., Deng, Y., Lee, N., Liu, H.Y., Amacher, S.L., Farber, S.A., and Ho, S.Y.	A web based resource characterizing the zebrafish developmental profile of over 16,000 transcripts	Gene Expression Patterns	2008	8(3)	171-180	
ZDB-PUB-080622-16	18558518	Boisset, G., Polok, B.K., and Schorderet, D.F.	Characterization of pip5k3 fleck corneal dystrophy-linked gene in zebrafish	Gene Expression Patterns	2008	8(6)	404-410	
ZDB-PUB-080707-8	18599366	Udvadia, A.J.	3.6kb Genomic sequence from Takifugu capable of promoting axon growth-associated gene expression in developing and regenerating zebrafish neurons	Gene Expression Patterns	2008	8(6)	382-388	
ZDB-PUB-080714-3	18602348	Shawi, M., and Serluca, F.C.	Identification of a BMP7 homolog in zebrafish expressed in developing organ systems	Gene Expression Patterns	2008	8(6)	369-375	
ZDB-PUB-081121-5	19007914	Baxendale, S., Chen, C.K., Tang, H., Davison, C., Hateren, L.V., Croning, M.D., Humphray, S.J., Hubbard, S.J., and Ingham, P.W.	Expression screening and annotation of a zebrafish myoblast library	Gene Expression Patterns	2009	9(2)	73-82	
ZDB-PUB-090204-12	19166981	Lin, W.W., Chen, L.H., Chen, M.C., and Kao, H.W.	Differential expression of zebrafish gpia and gpib during development	Gene Expression Patterns	2009	9(4)	238-245	
ZDB-PUB-090407-2	19332147	Zhou, W., and Hildebrandt, F.	Molecular cloning and expression of phospholipase C epsilon 1 in zebrafish	Gene Expression Patterns	2009	9(5)	282-288	
ZDB-PUB-090714-5	19577665	Liu, L., Hong, N., Xu, H., Li, M., Yan, Y., Purwanti, Y., Yi, M., Li, Z., Wang, L., and Hong, Y.	Medaka dead end encodes a cytoplasmic protein and identifies embryonic and adult germ cells	Gene Expression Patterns	2009	9(7)	541-548	
ZDB-PUB-091023-34	19822223	Drerup, C.M., Wiora, H.M., and Morris, J.A.	Characterization of the overlapping expression patterns of the zebrafish LIS1 orthologs	Gene Expression Patterns	2010	10(1)	75-85	
ZDB-PUB-030602-5	12727446	Lam, C.S., Sleptsova-Friedrich, I., Munro, A.D., and Korzh, V.	SHH and FGF8 play distinct roles during development of noradrenergic neurons in the locus coeruleus of the zebrafish	Molecular and Cellular Neuroscience	2003	22(4)	501-515	
ZDB-PUB-070424-9	17425960	Schweitzer, J., Gimnopoulos, D., Lieberoth, B.C., Pogoda, H.M., Feldner, J., Ebert, A., Schachner, M., Becker, T., and Becker, C.G.	Contactin1a expression is associated with oligodendrocyte differentiation and axonal regeneration in the central nervous system of zebrafish	Molecular and Cellular Neuroscience	2007	35(2)	194-207	
ZDB-PUB-080408-12	18378465	Watson, S., Chambers, D., Hobbs, C., Doherty, P., and Graham, A.	The endocannabinoid receptor, CB1, is required for normal axonal growth and fasciculation	Molecular and Cellular Neuroscience	2008	38(1)	89-97	
ZDB-PUB-010219-6	11178876	Lang, D.M., Warren, J.T., Klisa, C., and Stürmer, C.A.	Topographic restriction of TAG-1 expression in the developing retinotectal pathway and target dependent reexpression during axon regeneration	Molecular and Cellular Neuroscience	2001	17(2)	398-414	
ZDB-PUB-031003-2	12727449	Deininger, S.O., Rajendran, L., Lottspeich, F., Przybylski, M., Illges, H., Stürmer, C.A., and Reuter, A.	Identification of teleost Thy-1 and association with the microdomain/lipid raft reggie proteins in regenerating CNS axons	Molecular and Cellular Neuroscience	2003		544-554	
ZDB-PUB-031103-21	14572460	Dethleffsen, K., Heinrich, G., Lauth, M., Knapik, E.W., and Meyer, M.	Insert-containing neurotrophins in teleost fish and their relationship to nerve growth factor	Molecular and Cellular Neuroscience	2003	24(2)	380-394	
ZDB-PUB-050818-8	16098761	Becker, T., Lieberoth, B.C., Becker, C.G., and Schachner, M.	Differences in the regenerative response of neuronal cell populations and indications for plasticity in intraspinal neurons after spinal cord transection in adult zebrafish	Molecular and Cellular Neuroscience	2005	30(2)	265-278	
ZDB-PUB-010807-25	11461158	Mizuno, T., Kawasaki, M., Nakahira, M., Kagamiyama, H., Kikuchi, Y., Okamoto, H., Mori, K., and Yoshihara, Y.	Molecular diversity in zebrafish ncam family: three members with different vase usage and distinct localization	Molecular and Cellular Neuroscience	2001	18(1)	119-130	
ZDB-PUB-030716-14	12799137	Becker, T., McLane, M.A., and Becker, C.G.	Integrin antagonists affect growth and pathfinding of ventral motor nerves in the trunk of embryonic zebrafish	Molecular and Cellular Neuroscience	2003	23(1)	54-68	
ZDB-PUB-051121-5	16289898	Schweitzer, J., Becker, T., Schachner, M., Nave, K.A., and Werner, H.	Evolution of myelin proteolipid proteins: Gene duplication in teleosts and expression pattern divergence	Molecular and Cellular Neuroscience	2006	31(1)	161-177	
ZDB-PUB-970724-3	9204481	Weiland, U.M., Ott, H., Bastmeyer, M., Schaden, H., Giordano, S. and Stürmer, C.A.O.	Expression of an L1-related cell adhesion molecule on developing CNS fiber tracts in zebrafish and its functional contribution to axon fasciculation	Molecular and Cellular Neuroscience	1997	9(1)	77-89	
ZDB-PUB-970917-7	9268507	Lauderdale, J.D., Davis, N.M., and Kuwada, J.Y.	Axon tracts correlate with Netrin-1a expression in the zebrafish embryo	Molecular and Cellular Neuroscience	1997	9(4)	293-313	
ZDB-PUB-990107-20	9675051	Lauderdale, J.D., Pasquali, S.K., Fazel, R., van Eeden, F.J., Schauerte, H.E., Haffter, P., and Kuwada, J.Y.	Regulation of netrin-1a expression by hedgehog proteins	Molecular and Cellular Neuroscience	1998	11	194-205	
ZDB-PUB-061221-2	15340074	Friedrich, E.B., Liu, E., Sinha, S., Cook, S., Milstone, D.S., MacRae, C.A., Mariotti, M., Kuhlencordt, P.J., Force, T., Rosenzweig, A., St-Arnaud, R., Dedhar, S., and Gerszten, R.E.	Integrin-linked kinase regulates endothelial cell survival and vascular development	Mol. Cell. Biol.	2004	24(18)	8134-8144	
ZDB-PUB-061222-1	10490647	Wang, J.M., Prefontaine, G.G., Lemieux, M.E., Pope, L., Akimenko, M.A., and Hache, R.J.	Developmental effects of ectopic expression of the glucocorticoid receptor DNA binding domain are alleviated by an amino acid substitution that interferes with homeodomain binding	Mol. Cell. Biol.	1999	19(10)	7106-7122	
ZDB-PUB-061222-15	16980626	Nakada, C., Satoh, S., Tabata, Y., Arai, K., and Watanabe, S.	Transcriptional repressor foxl1 regulates central nervous system development by suppressing shh expression in zebra fish	Mol. Cell. Biol.	2006	26(19)	7246-7257	
ZDB-PUB-080227-7	18250154	Woo, A.J., Moran, T.B., Schindler, Y., Choe, S.K., Langer, N.B., Sullivan, M.R., Fujiwara, Y., Paw, B.H., and Cantor, A.B.	Identification of ZBP-89 as a Novel GATA-1 Associated Transcription Factor Involved in Megakaryocytic and Erythroid Development	Mol. Cell. Biol.	2008	28(8)	2675-2689	
ZDB-PUB-080326-2	18332117	Kawamura, A., Koshida, S., and Takada, S.	Activator-to-repressor conversion of T-box transcription factors by the Ripply family of Groucho/TLE-associated mediators	Mol. Cell. Biol.	2008	28(10)	3236-3244	
ZDB-PUB-081114-15	19001094	Kobayashi, M., Li, L., Iwamoto, N., Nakajima-Takagi, Y., Kaneko, H., Nakayama, Y., Eguchi, M., Wada, Y., Kumagai, Y., and Yamamoto, M.	The Antioxidant Defense System Keap1-Nrf2 Comprises a Multiple Sensing Mechanism for Responding to a Wide Range of Chemical Compounds	Mol. Cell. Biol.	2009	29(2)	493-502	
ZDB-PUB-090217-21	19204083	Ghosh, T.K., Song, F.F., Packham, E.A., Buxton, S., Robinson, T.E., Ronksley, J., Self, T., Bonser, A.J., and Brook, J.D.	Physical Interaction between TBX5 and MEF2C Is Required for Early Heart Development	Mol. Cell. Biol.	2009	29(8)	2205-2218	
ZDB-PUB-090318-1	16382153	Egloff, S., Van Herreweghe, E., and Kiss, T.	Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding	Mol. Cell. Biol.	2006	26(2)	630-642	
ZDB-PUB-090813-1	14612400	Tzouanacou, E., Tweedie, S., and Wilson, V.	Identification of Jade1, a gene encoding a PHD zinc finger protein, in a gene trap mutagenesis screen for genes involved in anteroposterior axis development	Mol. Cell. Biol.	2003	23(23)	8553-8562	
ZDB-PUB-961014-1005	8474440	Schreiber-Agus, N., Horner, J., Torres, R., Chiu, F.C., and DePinho, R.A.	Zebrafish myc family and max genes: differential expression and oncogenic activity throughout vertebrate evolution	Mol. Cell. Biol.	1993	13(5)	2765-2775	
ZDB-PUB-970324-5	9001218	Minucci, S., Leid, M., Toyama, R., Saint-Jeannet, J.P., Peterson, V.J., Horn, V., Ishmael, J.E., Bhattacharyya, N., Dey, A., Dawid, I.B., and Ozato, K.	Retinoid X receptor (RXR) within the RXR-retinoic acid receptor heterodimer binds its ligand and enhances retinoid-dependent gene expression	Mol. Cell. Biol.	1997	17(2)	644-655	
ZDB-PUB-061222-9	16024803	Saito, R., Tabata, Y., Muto, A., Arai, K., and Watanabe, S.	Melk-like kinase plays a role in hematopoiesis in the zebra fish	Mol. Cell. Biol.	2005	25(15)	6682-6693	
ZDB-PUB-070629-19	17576815	Pfaff, K.L., Straub, C.T., Chiang, K., Bear, D.M., Zhou, Y., and Zon, L.I.	The zebrafish cassiopeia mutant reveals that SIL is required for mitotic spindle organization	Mol. Cell. Biol.	2007	27(16)	5887-5897	
ZDB-PUB-070726-20	17636028	Tian, Y., Kolb, R., Hong, J.H., Carroll, J., Li, D., You, J., Bronson, R., Yaffe, M.B., Zhou, J., and Benjamin, T.	TAZ promotes PC2 degradation through a SCF{beta}-Trcp E3 Ligase Complex	Mol. Cell. Biol.	2007	27(18)	6383-6395	
ZDB-PUB-080602-2	17000762	Stoytcheva, Z., Tujebajeva, R.M., Harney, J.W., and Berry, M.J.	Efficient incorporation of multiple selenocysteines involves an inefficient decoding step serving as a potential translational checkpoint and ribosome bottleneck	Mol. Cell. Biol.	2006	26(24)	9177-9184	
ZDB-PUB-090330-3	19307306	Kleinridders, A., Pogoda, H.M., Irlenbusch, S., Smyth, N., Koncz, C., Hammerschmidt, M., and Brüning, J.C.	PLRG1 is an Essential Regulator of Cell Proliferation and Apoptosis during Vertebrate Development and Tissue Homeostasis	Mol. Cell. Biol.	2009	29(11)	3173-3185	
ZDB-PUB-090828-20	19704007	Rhodes, J., Amsterdam, A., Sanda, T., Moreau, L.A., McKenna, K., Heinrichs, S., Ganem, N.J., Ho, K.W., Neuberg, D.S., Johnston, A., Ahn, Y., Kutok, J.L., Hromas, R., Wray, J., Lee, C., Murphy, C., Radke, I., Downing, J.R., Fleming, M.D., Macconaill, L.E., Amatruda, J.F., Gutierrez, A., Galinsky, I., Stone, R.M., Ross, E.A., Pellman, D.S., Kanki, J.P., and Look, A.T.	Emi1 Maintains Genomic Integrity during Zebrafish Embryogenesis and Cooperates with p53 in Tumor Suppression	Mol. Cell. Biol.	2009	29(21)	5911-5922	
ZDB-PUB-961104-2	8657147	Argenton, F., Arava, Y., Aronheim, A., and Walker, M.D.	An activation domain of the helix-loop-helix transcription factor E2A shows cell type preference in vivo in microinjected zebrafish embryos	Mol. Cell. Biol.	1996	16(4)	1714-1721	
ZDB-PUB-970324-6	9001205	Zamir, E., Kam, Z., and Yarden, A.	Transcription-dependent induction of G1 phase during the zebra fish midblastula transition	Mol. Cell. Biol.	1997	17(2)	529-536	
ZDB-PUB-020806-1	11046149	Wan, L., Dockendorff, T.C., Jongens, T.A., and Dreyfuss, G.	Characterization of dFMR1, a Drosophila melanogaster homolog of the fragile X mental retardation protein	Mol. Cell. Biol.	2000	20(22)	8536-8547	
ZDB-PUB-040211-4	14585986	Nishikawa, K., Kobayashi, M., Masumi, A., Lyons, S.E., Weinstein, B.M.,Liu, P.P., and Yamamoto, M.	Self-association of Gata1 enhances transcriptional activity in vivo in zebra fish embryos	Mol. Cell. Biol.	2003	23(22)	8295-8305	
ZDB-PUB-040520-1	11438666	Gangloff, Y.G., Pointud, J.C., Thuault, S., Carre, L., Romier, C., Muratoglu, S., Brand, M., Tora, L., Couderc, J.L., and Davidson, I.	The TFIID components human TAF(II)140 and Drosophila BIP2 (TAF(II)155) are novel metazoan homologues of yeast TAF(II)47 containing a histone fold and a PHD finger	Mol. Cell. Biol.	2001	21(15)	5109-5121	
ZDB-PUB-040624-2	15169890	Correa, R.G., Tergaonkar, V., Ng, J.K., Dubova, I., Izpisúa Belmonte, J.C., and Verma, I.M.	Characterization of NF-kappa B/I kappa B proteins in zebra fish and their involvement in notochord development	Mol. Cell. Biol.	2004	24(12)	5257-5268	
ZDB-PUB-041109-1	14517294	Liu, Y.W., Gao, W., Teh, H.L., Tan, J.H., and Chan, W.K.	Prox1 is a novel coregulator of Ff1b and is involved in the embryonic development of the zebra fish interrenal primordium	Mol. Cell. Biol.	2003	23(20)	7243-7255	
ZDB-PUB-060224-1	16428465	Kajimura, S., Aida, K., and Duan, C.	Understanding hypoxia-induced gene expression in early development: in vitro and in vivo analysis of hypoxia-inducible factor 1-regulated zebra fish insulin-like growth factor binding protein 1 gene expression	Mol. Cell. Biol.	2006	26 (3)	1142-1155	
ZDB-PUB-060921-7	16966376	Wang, Y., Shupenko, C.C., Melo, L.F., and Strauss, P.R.	DNA Repair Protein Involved in Heart and Blood Development	Mol. Cell. Biol.	2006	26(23)	9083-9093	
ZDB-PUB-061222-14	16980612	Rai, K., Nadauld, L.D., Chidester, S., Manos, E.J., James, S.R., Karpf, A.R., Cairns, B.R., and Jones, D.A.	Zebra fish Dnmt1 and Suv39h1 regulate organ-specific terminal differentiation during development	Mol. Cell. Biol.	2006	26(19)	7077-7085	
ZDB-PUB-070427-20	17438144	Zhang, S., Fei, T., Zhang, L., Zhang, R., Chen, F., Ning, Y., Han, Y., Feng, X.H., Meng, A., and Chen, Y.G.	Smad7 antagonizes TGF-{beta} signaling in the nucleus by interfering with functional Smad-DNA complex formation	Mol. Cell. Biol.	2007	27(12)	4488-4499	
ZDB-PUB-090424-16	19380487	Dovey, M., Patton, E.E., Bowman, T., North, T., Goessling, W., Zhou, Y., and Zon, L.I.	Topoisomerase II alpha is required for embryonic development and liver regeneration in zebrafish	Mol. Cell. Biol.	2009	29(13)	3746-3753	
ZDB-PUB-090511-1	19414594	Wittkopp, N., Huntzinger, E., Weiler, C., Saulière, J., Schmidt, S., Sonawane, M., and Izaurralde, E.	Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival	Mol. Cell. Biol.	2009	29(13)	3517-3528	
ZDB-PUB-961014-511	7565671	Jones, B.B., Ohno, C.K., Allenby, G., Boffa, M.B., Levin, A.A., Grippo, J.F., and Petkovich, M.	New retinoid X receptor subtypes in zebrafish (Danio rerio) differentially modulate transcription and do not bind 9-cis retinoic acid	Mol. Cell. Biol.	1995	15(10)	5226-5234	
ZDB-PUB-040402-5	15055544	Ro, H., Jang, Y., and Rhee, M.	The RING domain of Siaz, the zebrafish homologue of Drosophila seven in absentia, is essential for cellular growth arrest	Mol. Cells	2004	17(1)	160-165	
ZDB-PUB-040609-13	15179057	Ro, H., Soun, K., Kim, E.J., and Rhee, M.	Novel Vector Systems Optimized for Injecting in vitro-synthesized mRNA into Zebrafish Embryos	Mol. Cells	2004	17(2)	373-376	
ZDB-PUB-070806-8	17646703	Lee, Y.M., Rhee, J.S., Hwang, D.S., Kim, I.C., Raisuddin, S., and Lee, J.S.	Mining of biomarker genes from expressed sequence tags and differential display reverse transcriptase-polymerase chain reaction in the self-fertilizing fish, Kryptolebias marmoratus and their expression patterns in response to exposure to an endocrine-disrupting alkylphenol, bisphenol A	Mol. Cells	2007	23(3)	287-303	
ZDB-PUB-090330-18	19326086	Seo, J.S., Kim, M.S., Park, E.M., Ahn, S.J., Kim, N.Y., Jung, S.H., Kim, J.W., Lee, H.H., and Chung, J.K.	Cloning and characterization of muscarinic receptor genes from the nile tilapia (Oreochromis niloticus)	Mol. Cells	2009	27(3)	383-390	
ZDB-PUB-040109-33	14687934	Meijer, A.H., Gabby Krens, S.F., Medina Rodriguez, I.A., He, S., Bitter, W., Snaar-Jagalska, Ewa B., and Spaink, H.P.	Expression analysis of the Toll-like receptor and TIR domain adaptor families of zebrafish	Mol. Immunol.	2004	40(11)	773-783	
ZDB-PUB-050419-5	15829313	Danilova, N.	Analysis of recombination signal sequences in zebrafish	Mol. Immunol.	2005	42(10)	1243-1249	
ZDB-PUB-060315-5	16478632	Zheng, W., and Chen, X.	Cloning and expression analysis of interferon-gamma-inducible-lysosomal thiol reductase gene in large yellow croaker (Pseudosciaena crocea)	Mol. Immunol.	2006	43(13)	2135-2141	
ZDB-PUB-060927-7	16996591	Zhong, H., Li, Z., Lin, S., and Chang, Y.	Initiation of V(D)J recombination in zebrafish (Danio rerio) ovaries	Mol. Immunol.	2007	44(7)	1795-1803	
ZDB-PUB-061010-7	17005252	Li, Z., and Chang, Y.	V(D)J recombination in zebrafish: Normal joining products with accumulation of unresolved coding ends and deleted signal ends	Mol. Immunol.	2007	44(7)	1804-1813	
ZDB-PUB-070122-1	17194477	Takizawa, F., Araki, K., Ito, K., Moritomo, T., and Nakanishi, T.	Expression analysis of two Eomesodermin homologues in zebrafish lymphoid tissues and cells	Mol. Immunol.	2007	44(9)	2324-2331	
ZDB-PUB-070330-46	16620988	Jin, H.J., Shao, J.Z., and Xiang, L.X.	Identification and characterization of suppressor of cytokine signaling 3 (SOCS-3) homologues in teleost fish	Mol. Immunol.	2007	44(5)	1042-1051	
ZDB-PUB-081125-4	19022503	Liu, Y., Chang, M.X., Wu, S.G., and Nie, P.	Characterization of C-C chemokine receptor subfamily in teleost fish	Mol. Immunol.	2009	46(3)	498-504	
ZDB-PUB-090217-16	19200601	Jima, D.D., Shah, R.N., Orcutt, T.M., Joshi, D., Law, J.M., Litman, G.W., Trede, N.S., and Yoder, J.A.	Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity	Mol. Immunol.	2009	46(7)	1505-1516	
ZDB-PUB-090225-1	16460805	Huising, M.O., van Schijndel, J.E., Kruiswijk, C.P., Nabuurs, S.B., Savelkoul, H.F., Flik, G., and Verburg-van Kemenade, B.M.	The presence of multiple and differentially regulated interleukin-12p40 genes in bony fishes signifies an expansion of the vertebrate heterodimeric cytokine family	Mol. Immunol.	2006	43(10)	1519-1533	
ZDB-PUB-970326-9	8700167	Seeger, A., Mayer, W.E., and Klein, J.	A complement factor B-like cDNA clone from the zebrafish (Brachydanio rerio)	Mol. Immunol.	1996	33(6)	511-520	
ZDB-PUB-040109-34	14687933	Jault, C., Pichon, L., and Chluba, J.	Toll-like receptor gene family and TIR-domain adapters in Danio rerio	Mol. Immunol.	2004	40(11)	759-771	
ZDB-PUB-050419-3	15829296	Phelan, P.E., Mellon, M.T., and Kim, C.H.	Functional characterization of full-length TLR3, IRAK-4, and TRAF6 in zebrafish (Danio rerio)	Mol. Immunol.	2005	42(9)	1057-1071	
ZDB-PUB-050714-3	16005068	Igawa, D., Sakai, M., Savan, R.	An unexpected discovery of two interferon gamma-like genes along with interleukin (IL)-22 and -26 from teleost: IL-22 and -26 genes have been described for the first time outside mammals	Mol. Immunol.	2006	43(7)	999-1009	
ZDB-PUB-050818-18	16076494	Ohtani, M., Miyadai, T., and Hiroishi, S.	Molecular cloning of the BCL-6 gene, a transcriptional repressor for B-cell differentiation, in torafugu (Takifugu rubripes)	Mol. Immunol.	2005	43(7)	1047-1053	
ZDB-PUB-060724-2	16837047	Lopez-Castejon, G., Young, M.T., Meseguer, J., Surprenant, A., and Mulero, V.	Characterization of ATP-gated P2X(7) receptors in fish provides new insights into the mechanism of release of the leaderless cytokine interleukin-1beta	Mol. Immunol.	2007	44(6)	1286-1299	
ZDB-PUB-070726-7	17624433	Takizawa, F., Araki, K., Kobayashi, I., Moritomo, T., Ototake, M., and Nakanishi, T.	Molecular cloning and expression analysis of T-bet in ginbuna crucian carp (Carassius auratus langsdorfii)	Mol. Immunol.	2008	45(1)	127-136	
ZDB-PUB-070907-16	17727953	Lu, M.W., Chao, Y.M., Guo, T.C., Santi, N., Evensen, O., Kasani, S.K., Hong, J.R., and Wu, J.L.	The interferon response is involved in nervous necrosis virus acute and persistent infection in zebrafish infection model	Mol. Immunol.	2008	45(4)	1146-1152	
ZDB-PUB-080527-2	18485482	Padhi, A., Buchheim, M.A., and Verghese, B.	Dynamic evolutionary pattern of alpha(2)-macroglobulin in a model organism, the zebrafish (Danio rerio)	Mol. Immunol.	2008	45(11)	3312-3318	
ZDB-PUB-080718-1	18029016	Jin, H.J., Shao, J.Z., Xiang, L.X., Wang, H., and Sun, L.L.	Global identification and comparative analysis of SOCS genes in fish: insights into the molecular evolution of SOCS family	Mol. Immunol.	2008	45(5)	1258-1268	
ZDB-PUB-090225-13	16257447	Choi, W., Lee, E.Y., and Choi, T.J.	Cloning and sequence analysis of the beta2-microglobulin transcript from flounder, Paralichthys olivaceous	Mol. Immunol.	2006	43(10)	1565-1572	
ZDB-PUB-090225-2	15950731	Baoprasertkul, P., He, C., Peatman, E., Zhang, S., Li, P., and Liu, Z.	Constitutive expression of three novel catfish CXC chemokines: homeostatic chemokines in teleost fish	Mol. Immunol.	2005	42(11)	1355-1366	
ZDB-PUB-090225-3	15488938	Honda, T., Nishizawa, T., Uenobe, M., Kohchi, C., Kuroda, A., Ototake, M., Nakanishi, T., Yokomizo, Y., Takahashi, Y., Inagawa, H., and Soma, G.	Molecular cloning and expression analysis of a macrophage-colony stimulating factor receptor-like gene from rainbow trout, Oncorhynchus mykiss	Mol. Immunol.	2005	42(1)	1-8	
ZDB-PUB-090505-15	19409617	van der Sar, A.M., Spaink, H.P., Zakrzewska, A., Bitter, W., and Meijer, A.H.	Specificity of the zebrafish host transcriptome response to acute and chronic mycobacterial infection and the role of innate and adaptive immune components	Mol. Immunol.	2009	46(11-12)	2317-2332	
ZDB-PUB-090714-4	19577303	Grayfer, L., and Belosevic, M.	Molecular characterization of novel interferon gamma receptor 1 isoforms in zebrafish (Danio rerio) and goldfish (Carassius auratus L.)	Mol. Immunol.	2009	46(15)	3050-3059	
ZDB-PUB-090731-3	19631987	Hegedus, Z., Zakrzewska, A., Agoston, V.C., Ordas, A., Rácz, P., Mink, M., Spaink, H.P., and Meijer, A.H.	Deep sequencing of the zebrafish transcriptome response to mycobacterium infection	Mol. Immunol.	2009	46(15)	2918-2930	
ZDB-PUB-091120-68	19923001	Feng, C.Y., and Rise, M.L.	Characterization and expression analyses of anti-apoptotic Bcl-2-like genes NR-13, Mcl-1, Bcl-X1, and Bcl-X2 in Atlantic cod (Gadus morhua)	Mol. Immunol.	2010	47(4)	763-784	
ZDB-PUB-091216-1	19576635	Kumari, J., Bogwald, J., and Dalmo, R.A.	Transcription factor GATA-3 in Atlantic salmon (Salmo salar): molecular characterization, promoter activity and expression analysis	Mol. Immunol.	2009	46(15)	3099-3107	
ZDB-PUB-050419-4	15829308	Meijer, A.H., Verbeek, F.J., Salas-Vidal, E., Corredor-Adámez, M., Bussman, J., van der Sar, A.M., Otto, G.W., Geisler, R., and Spaink, H.P.	Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection	Mol. Immunol.	2005	42(10)	1185-1203	
ZDB-PUB-050804-1	16055191	Bei, J.X., Suetake, H., Araki, K., Kikuchi, K., Yoshiura, Y., Lin, H.R., and Suzuki, Y.	Two interleukin (IL)-15 homologues in fish from two distinct origins	Mol. Immunol.	2005	43(7)	860-869	
ZDB-PUB-051114-2	16271391	Wang, Q., Wang, Y., Xu, P., and Liu, Z.	NK-lysin of channel catfish: Gene triplication, sequence variation, and expression analysis	Mol. Immunol.	2006	43(10)	1676-1686	
ZDB-PUB-060323-20	16540171	Zou, J., Mercier, C., Koussounadis, A., and Secombes, C.	Discovery of multiple beta-defensin like homologues in teleost fish	Mol. Immunol.	2007	44(4)	638-647	
ZDB-PUB-060501-2	16630661	Lin, B., Chen, S., Cao, Z., Lin, Y., Mo, D., Zhang, H., Gu, J., Dong, M., Liu, Z., and Xu, A.	Acute phase response in zebrafish upon Aeromonas salmonicida and Staphylococcus aureus infection: Striking similarities and obvious differences with mammals	Mol. Immunol.	2007	44(4)	295-301	
ZDB-PUB-060816-23	16901544	Liu, G., Zheng, W., and Chen, X.	Molecular cloning of proteasome activator PA28-beta subunit of large yellow croaker (Pseudosciana crocea) and its coordinated up-regulation with MHC class I alpha-chain and beta(2)-microglobulin in poly I:C-treated fish	Mol. Immunol.	2007	44(6)	1190-1197	
ZDB-PUB-070303-10	17296228	Chang, M.X., Nie, P., and Wei, L.L.	Short and long peptidoglycan recognition proteins (PGRPs) in zebrafish, with findings of multiple PGRP homologs in teleost fish	Mol. Immunol.	2007	44(11)	3005-3023	
ZDB-PUB-090225-4	14597164	Kim, D.H., Lee, S.M., Hong, B.Y., Kim, Y.T., and Choi, T.J.	Cloning and sequence analysis of cDNA for the proteasome activator PA28-beta subunit of flounder (Paralichthys olivaceus)	Mol. Immunol.	2003	40(9)	611-616	
ZDB-PUB-091204-23	19931913	Hu, Y.L., Xiang, L.X., and Shao, J.Z.	Identification and characterization of a novel immunoglobulin Z isotype in zebrafish: Implications for a distinct B cell receptor in lower vertebrates	Mol. Immunol.	2010	47(4)	738-746	
ZDB-PUB-060531-10	16714409	Carney, S.A., Chen, J., Burns, C.G., Xiong, K.M., Peterson, R.E., and Heideman, W.	Aryl hydrocarbon receptor activation produces heart-specific transcriptional and toxic responses in developing zebrafish	Mol. Pharmacol.	2006	70(2)	549-561	
ZDB-PUB-080415-11	18403718	Shah, P.P., Myers, M.C., Beavers, M.P., Purvis, J.E., Jing, H., Grieser, H.J., Sharlow, E.R., Napper, A.D., Huryn, D.M., Cooperman, B.S., Smith, A.B., and Diamond, S.L.	Kinetic Characterization and Molecular Docking of a Novel, Potent, and Selective Slow-binding Inhibitor of Human Cathepsin L	Mol. Pharmacol.	2008	74(1)	34-41	
ZDB-PUB-080915-17	18784347	Xiong, K.M., Peterson, R.E., and Heideman, W.	Aryl hydrocarbon receptor-mediated down-regulation of sox9b causes jaw malformation in zebrafish embryos	Mol. Pharmacol.	2008	74(6)	1544-1553	
ZDB-PUB-020717-3	12130674	Andreasen, E.A., Hahn, M.E., Heideman, W., Peterson, R.E., and Tanguay, R.L.	The zebrafish (Danio rerio) aryl hydrocarbon receptor type 1 (zfAHR1) is a novel vertebrate receptor	Mol. Pharmacol.	2002	62(2)	234-249	
ZDB-PUB-050211-6	15703378	Belleri, M., Ribatti, D., Nicoli, S., Cotelli, F., Forti, L., Vannini, V., Stivala, L.A., and Presta, M.	Antiangiogenic and vascular targeting activity of the microtubule-destabilizing trans-resveratrol derivative 3,5,4'-trimethoxystilbene	Mol. Pharmacol.	2005	67(5)	1451-1459	
ZDB-PUB-051128-10	16306231	Prasch, A.L., Tanguay, R.L., Mehta, V., Heideman, W., and Peterson, R.E.	Identification of Zebrafish ARNT1 Homologs: 2,3,7,8-Tetrachlorodibenzo-p-dioxin Toxicity in the Developing Zebrafish Requires ARNT1	Mol. Pharmacol.	2006	69(3)	776-787	
ZDB-PUB-090407-1	18000031	Evans, B.R., Karchner, S.I., Allan, L.L., Pollenz, R.S., Tanguay, R.L., Jenny, M.J., Sherr, D.H., and Hahn, M.E.	Repression of aryl hydrocarbon receptor (AHR) signaling by AHR repressor: role of DNA binding and competition for AHR nuclear translocator	Mol. Pharmacol.	2008	73(2)	387-398	
ZDB-PUB-040826-1	15322242	Carney, S.A., Peterson, R.E., and Heideman, W.	2,3,7,8-Tetrachlorodibenzo-p-dioxin Activation of the Aryl Hydrocarbon Receptor/Aryl Hydrocarbon Receptor Nuclear Translocator Pathway Causes Developmental Toxicity through a CYP1A-Independent Mechanism in Zebrafish	Mol. Pharmacol.	2004	66(3)	512-521	
ZDB-PUB-051012-20	16214955	Mathew, L.K., Andreasen, E.A., and Tanguay, R.L.	AHR Activation Inhibits Regenerative Growth.	Mol. Pharmacol.	2006	69(1)	257-265	
ZDB-PUB-050420-1	15828683	Vande Broek, A., Gysegom, P., Ona, O., Hendrickx, N., Prinsen, E., Van Impe, J., and Vanderleyden, J.	Transcriptional analysis of the Azospirillum brasilense indole-3-pyruvate decarboxylase gene and identification of a cis-acting sequence involved in auxin responsive expression	Mol. Plant Microbe Interact.	2005	18(4)	311-323	
ZDB-PUB-010416-4	none	Thisse, B., Thisse, C., and Laudet, V.	Inherited circadian clock in zebrafish: the mother and her clock	Médecine Sciences	2001	17(3)	365-368	
ZDB-PUB-000201-17	10625393	Ananuma, K., Takeda, H., Amanuma, H., and Aoki, Y.	Transgenic zebrafish for detecting mutations caused by compounds in aquatic environments	Nat. Biotechnol.	2000	18(1)	62-65	
ZDB-PUB-030805-2	12894204	Pichler, F.B., Laurenson, S., Williams, L.C., Dodd, A., Copp, B.R., and Love, D.R.	Chemical discovery and global gene expression analysis in zebrafish	Nat. Biotechnol.	2003	21(8)	879-883	
ZDB-PUB-080527-24	18500334	Doyon, Y., McCammon, J.M., Miller, J.C., Faraji, F., Ngo, C., Katibah, G.E., Amora, R., Hocking, T.D., Zhang, L., Rebar, E.J., Gregory, P.D., Urnov, F.D., and Amacher, S.L.	Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases	Nat. Biotechnol.	2008	26(6)	702-708	
ZDB-PUB-080527-25	18500337	Meng, X., Noyes, M.B., Zhu, L.J., Lawson, N.D., and Wolfe, S.A.	Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases	Nat. Biotechnol.	2008	26(6)	695-701	
ZDB-PUB-020807-11	12134167	Lee, K-Y., Huang, H., Ju, B., Yang, Z., and Lin, S.	Cloned zebrafish by nuclear transfer from long-term-cultured cells	Nat. Biotechnol.	2002	20(8)	795-799	
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ZDB-PUB-040421-2	15097998	Peterson, R.T., Shaw, S.Y., Peterson, T.A., Milan, D.J., Zhong, T.P., Schreiber, S.L., MacRae, C.A., and Fishman, M.C.	Chemical suppression of a genetic mutation in a zebrafish model of aortic coarctation	Nat. Biotechnol.	2004	22(5)	595-599	
ZDB-PUB-051214-12	16327811	Lam, S.H., Wu, Y.L., Vega, V.B., Miller, L.D., Spitsbergen, J., Tong, Y., Zhan, H., Govindarajan, K.R., Lee, S., Mathavan, S., Krishna Murthy, K.R., Buhler, D.R., Liu, E.T., and Gong, Z.	Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression	Nat. Biotechnol.	2006	24(1)	73-75	
ZDB-PUB-060615-1	16680138	Aerts, S., Lambrechts, D., Maity, S., Van Loo, P., Coessens, B., De Smet, F., Tranchevent, L.C., De Moor, B., Marynen, P., Hassan, B., Carmeliet, P., and Moreau, Y.	Gene prioritization through genomic data fusion	Nat. Biotechnol.	2006	24(5)	537-544	
ZDB-PUB-031111-3	14608381	Traver, D., Paw, B.H., Poss, K.D., Penberthy, W.T., Lin, S., and Zon, L.I.	Transplantation and in vivo imaging of multilineage engraftment in zebrafish bloodless mutants	Nat. Immunol.	2003	4(12)	1238-1246	
ZDB-PUB-050203-3	15685175	Danilova, N., Bussmann, J., Jekosch, K., and Steiner, L.A.	The immunoglobulin heavy-chain locus in zebrafish: identification and expression of a previously unknown isotype, immunoglobulin Z	Nat. Immunol.	2005	6(3)	295-302	
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ZDB-PUB-050412-3	15806108	Thoma, N.H., Czyzewski, B.K., Alexeev, A.A., Mazin, A.V., Kowalczykowski, S.C., and Pavletich, N.P.	Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54	Nat. Struct. Mol. Biol.	2005	12(4)	350-356	
ZDB-PUB-090914-37	19734898	Buschbeck, M., Uribesalgo, I., Wibowo, I., Rué, P., Martin, D., Gutierrez, A., Morey, L., Guigó, R., López-Schier, H., and Di Croce, L.	The histone variant macroH2A is an epigenetic regulator of key developmental genes	Nat. Struct. Mol. Biol.	2009	16(10)	1074-1079	
ZDB-PUB-961219-20	8896553	Felsenfeld, A.L.	Defining the boundaries of zebrafish developmental genetics	Nature Genetics	1996	14(3)	258-263	
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ZDB-PUB-980317-2	9537416	Postlethwait, J.H, Yan, Y.-L., Gates, M.A., Horne, S., Amores, A., Brownlie, A., Donovan, A., Egan, E.S., Force, A., Gong, Z., Goutel, C., Fritz, A., Kelsh, R., Knapik, E., Liao, E., Paw, B., Ransom, D., Singer, A., Thomson, M., Abduljabbar, T.S., Yelick, P., Beier, D., Joly, J.-S., Larhammar, D., Rosa, F., Westerfield, M., Zon, L.I., Johnson, S.L., and Talbot, W.S.	Vertebrate genome evolution and the zebrafish gene map	Nature Genetics	1998	18	345-349	
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ZDB-PUB-961014-803	none	Mos, W. and VanderStelt, A.	Efficiency in relation to the design of the segmented body musculature in Brachydanio rerio	Neth. J. Zool.	1982	32	123-143	
ZDB-PUB-961014-1174		van-Raamsdonk, W., VanderStelt, A., Diegenbach, P.C., and Mijzen, P.	Form development of the somites in the teleost Branchydanio rerio	Neth. J. Zool.	1976	25	376	
ZDB-PUB-001206-5	10403627	Tohyama, Y., Kasama-Yoshida, H., Sakuma, M., Kobayashi, Y., Cao, Y., Hasegawa, M., Kojima, H., Tamai, Y., Tanokura, M., and Kurihara, T.	Gene structure and amino acid sequence of Latimeria chalumnae (coelacanth) myelin DM20: phylogenetic relation of the fish	Neurochem. Res.	1999	24(7)	867-873	
ZDB-PUB-961014-5	9139245	Adams, D.S., Kiyokawa, M., Getman, M.E., and Shashoua, V.E.	Genes encoding giant danio and golden shiner ependymin	Neurochem. Res.	1996	21	377-384	
ZDB-PUB-060906-29	16951904	Avila, R.L., Tevlin, B.R., Lees, J.P., Inouye, H., and Kirschner, D.A.	Myelin Structure and Composition in Zebrafish	Neurochem. Res.	2007	32(2)	197-209	
ZDB-PUB-061222-3	12716017	Levine, J., Panchalingam, K., McClure, R.J., Gershon, S., and Pettegrew, J.W.	Effects of acetyl-L-carnitine and myo-inositol on high-energy phosphate and membrane phospholipid metabolism in zebra fish: a 31P-NMR-spectroscopy study	Neurochem. Res.	2003	28(5)	687-690	
ZDB-PUB-961014-569	9182247	Kim, C.H., Taira, E., Kuo, C.H., Li, B.S., Okamoto, H., Nakahira, K., Ikenaka, K., Higuchi, H., and Miki, N.	Neuron-specific expression of a chicken gicerin cDNA transient transgenic zebrafish	Neurochem. Res.	1996	21	231-237	
ZDB-PUB-990628-8	10465682	David-Watine, B., Shorte, S.L., Fucile, S., de Saint Jan, D., Korn, H., and Bregestovski, P.	Functional integrity of green fluorescent protein conjugated glycine receptor channels	Neuropharmacology	1999	38(6)	785-792	
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ZDB-PUB-041104-3	15519756	Germanà, A., Montalbano, G., Laurà, R., Ciriaco, E., Del Valle, M.E., and Vega, J.A.	S100 protein-like immunoreactivity in the crypt olfactory neurons of the adult zebrafish	Neurosci. Lett.	2004	371(2-3)	196-198	
ZDB-PUB-060124-7	16406323	Germanà, A., Montalbano, G., de Carlos, F., Levanti, M.B., Abbate, F., Vega, J.A., and Ciriaco, E.	Epidermal growth factor (EGF) expression in lateral line system and in taste buds of adult zebrafish (Brachidanio rerio)	Neurosci. Lett.	2006	397(3)	210-213	
ZDB-PUB-061229-13	17178437	Kanungo, J., Li, B.S., Goswami, M., Zheng, Y.L., Ramchandran, R., and Pant, H.C.	Cloning and characterization of zebrafish (Danio rerio) cyclin-dependent kinase 5	Neurosci. Lett.	2007	412(3)	233-238	
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ZDB-PUB-961014-798	8592638	Morita, T., Nitta, H., Kiyama, Y., Mori, H., and Mishina, M.	Differential expression of two zebrafish emx homeoprotein mRNAs in the developing brain	Neurosci. Lett.	1995	198	131-134	
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ZDB-PUB-061031-20	17069980	Gonzalez-Nunez, V., Marron Fernandez de Velasco, E., Arsequell, G., Valencia, G.,and Rodriguez, R.E.	Identification of dynorphin a from zebrafish: a comparative study with mammalian dynorphin A	Neuroscience	2007	144(2)	675-684	
ZDB-PUB-071219-27	18082336	Macho Sanchez-Simon, F., and Rodriguez, R.E.	Developmental expression and distribution of opioid receptors in zebrafish	Neuroscience	2008	151(1)	129-137	
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ZDB-PUB-090929-10	19778592	Khan, S., Perry, C., Tetreault, M.L., Henry, D., Trimmer, J.S., Zimmerman, A.L., and Matthews, G.	A novel cyclic nucleotide-gated ion channel enriched in synaptic terminals of isotocin neurons in zebrafish brain and pituitary	Neuroscience	2010	165(1)	79-89	
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ZDB-PUB-010315-2	11246169	Hatta, K., Ankri, N., Faber, D.S., and Korn, H.	Slow inhibitory potentials in the teleost Mauthner cell	Neuroscience	2001	103(2)	561-579	
ZDB-PUB-010404-3	11274796	Imboden, M., Devignot, V., Korn, H., and Goblet, C.	Regional distribution of glycine receptor messenger RNA in the central nervous system of zebrafish	Neuroscience	2001	103(3)	811-830	
ZDB-PUB-010912-11	11530218	Byrd, C.A. and Brunjes, P.C.	Neurogenesis in the olfactory bulb of adult zebrafish	Neuroscience	2001	105(4)	793-801	
ZDB-PUB-020912-8	12204196	Brent, L. and Drapeau, P.	Targeted 'knockdown' of channel expression in vivo with an antisense morpholino oligonucleotide	Neuroscience	2002	114(2)	275-278	
ZDB-PUB-020920-1	1922785	van Asselt, E., deGraaf, F., Smit-Onel, M.J., and van Raamsdonk, W.	Spinal neurons in the zebrafish labeled with fluoro-gold and wheat-germ agglutinin	Neuroscience	1991	43(2-3)	611-622	
ZDB-PUB-031031-8	14580944	Kucenas, S., Li, Z., Cox, J.A., Egan, T.M., and Voigt, M.M.	Molecular characterization of the zebrafish P2X receptor subunit gene family	Neuroscience	2003	121(4)	935-945	
ZDB-PUB-031119-9	14614909	Devignot, V., Prado de Carvalho, L., Bregestovski, P., and Goblet, C.	A novel glycine receptor alphaZ1 subunit variant in the zebrafish brain	Neuroscience	2003	122(2)	449-457	
ZDB-PUB-060921-17	16973301	Rodger, J., King, C.E., Lukehurst, S., Chen, P.B., Dunlop, S.A., Beazley, L.D., and Ziman, M.R.	Changing Pax6 expression correlates with axon outgrowth and restoration of topography during optic nerve regeneration	Neuroscience	2006	142(4)	1043-1054	
ZDB-PUB-070409-8	17395385	Hinsch, K., and Zupanc, G.K.	Generation and long-term persistence of new neurons in the adult zebrafish brain: A quantitative analysis	Neuroscience	2007	146(2)	679-696	
ZDB-PUB-070427-11	17428610	Bretaud, S., Li, Q., Lockwood, B.L., Kobayashi, K., Lin, E., and Guo, S.	A choice behavior for morphine reveals experience-dependent drug preference and underlying neural substrates in developing larval zebrafish	Neuroscience	2007	146(3)	1109-1116	
ZDB-PUB-090413-7	19356698	Lamora, A., and Voigt, M.M.	Cranial sensory ganglia neurons require intrinsic N-cadherin function for guidance of afferent fibers to their final targets	Neuroscience	2009	159(3)	1175-1184	
ZDB-PUB-961014-801	3380296	Mos, W., Maslam, S., and Armée-Horvath, E.	Changes in the distribution of synapses during growth: a quantitative morphological study of the neuromuscular system of fishes	Neuroscience	1988	24	1061-1069	
ZDB-PUB-100119-9	20074619	Sankrithi, N.S., and O'Malley, D.M.	Activation of a Multisensory, Multifunctional Nucleus in the Zebrafish Midbrain during Diverse Locomotor Behaviors	Neuroscience	2010	\ 	\ 	
ZDB-PUB-010404-4	11274795	Imboden, M., De Saint Jan, D., Leulier, F., Korn, H., Goblet, C., and Bregestovski, P.	Isolation and characterization of an alpha 2-type zebrafish glycine receptor subunit	Neuroscience	2001	103(3)	799-810	
ZDB-PUB-031204-11	14643770	Edwards, J.G. and Michel, W.C.	Pharmacological characterization of ionotropic glutamate receptors in the zebrafish olfactory bulb	Neuroscience	2003	122(4)	1037-1047	
ZDB-PUB-050301-1	15730879	Baraban, S.C., Taylor, M.R., Castro, P.A., and Baier, H.	Pentylenetetrazole induced changes in zebrafish behavior, neural activity and c-fos expression	Neuroscience	2005	131(3)	759-768	
ZDB-PUB-060403-2	16564635	Rigo, J.M., and Legendre, P.	Frequency-dependent modulation of glycine receptor activation recorded from the zebrafish larvae hindbrain	Neuroscience	2006	140(2)	389-402	
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ZDB-PUB-970812-4	9252227	Triller, A., Rostaing, P., Korn, H., and Legendre, P.	Morphofunctional evidence for mature synaptic contacts on the Mauthner cell of 52-hour-old zebrafish larvae	Neuroscience	1997	80(1)	133-145	
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ZDB-PUB-080309-21	18300411	Schmidt, M., De Mazière, A., Smyczek, T., Gray, A., Parker, L., Filvaroff, E., French, D., van Dijk, S., Klumperman, J., and Ye, W.	The role of Egfl7 in vascular morphogenesis	Novartis Found Symp.	2007	283(1)	18-28	
ZDB-PUB-080309-22	18300419	Yaniv, K., Isogai, S., Castranova, D., Dye, L., Hitomi, J., and Weinstein, B.M.	Imaging the developing lymphatic system using the zebrafish	Novartis Found Symp.	2007	283(1)	139-148	
ZDB-PUB-030106-1	none	Wu, Y., Ye, Y., and Wu, Q.	Studies on the induction of allothiploid using heat shock in zebrafish, Brachydanio frankei and Brachydanio rerio	Oceanol. Limnol. Sin./Haiyang Yu Huzhao	2000	31(5)	465-470	
ZDB-PUB-020514-11	11969071	Author unknown	Gill system development (Russian article)	Ontogenez	2002	33(2)	118-123	
ZDB-PUB-020604-4	11605411	Kliachko, O.S. and Ozerniuk, N.D.	Different functional and structural properties of lactate dehydrogenase isozymes at different stages of Danio rerio ontogenesis	Ontogenez	2001	32(5)	374-376	
ZDB-PUB-020920-3	12174571	Minin, A.A., Ozerova, S.G., Khadarova, N.V., and Zaraskia, A.G.	A study of annexin family protein in early development of fish. II. Analysis of complete amino acid sequence	Ontogenez	2002	33(4)	264-267	
ZDB-PUB-071129-6	18038655	[No authors listed]	Development of the model of cell cycle synchronization in early embryos of Danio rerio (Teleostei)	Ontogenez	2007	38(5)	372-379	
ZDB-PUB-970807-1	none	Benyumov, A.O., Dubrovskaya, T.A., Barmintsev, V.A., and Litzuan, S.	Duration of the first mitotic cycles and staging of embryogenesis of Danio rerio	Ontogenez	1995	26(2)	132-138(In Russian)	
ZDB-PUB-080722-18	18634335	none listed	[A study of proteins of annexin group in early fish development. IV. Identification of calcium-binding proteins in zebrafish egg by mass spectrometry]	Ontogenez	2008	39(3)	222-226	
ZDB-PUB-080825-9	18669290	No authors listed	Search for tissue-specific regulatory elements using Tol2 transposon as an example of evolutionary synthesis of genomics and developmental biology	Ontogenez	2008	39(2)	94-99	
ZDB-PUB-000606-4	10805474	Drummond, I.A	The zebrafish pronephros: a genetic system for studies of kidney development	Pediatr. Nephrol.	2000	14(5)	428-435	
ZDB-PUB-080714-8	18604564	Tobin, J.L., and Beales, P.L.	Restoration of renal function in zebrafish models of ciliopathies	Pediatr. Nephrol.	2008	23(11)	2095-2099	
ZDB-PUB-961014-1196	none	Vittal, M., Deobhankar, R.B., and Hasan, M.M.	Experiments on feeding behaviour of some common mosquito larvivorous fish	Pestology	1984	8	19-22	
ZDB-PUB-961014-914	none	Rahmann, H. and Roesner, H.	Autoradiographische Untersuchungen zum Wirkungsmechanismus von Methamphetamin im ZNS von Teleosteern	Pflügers Archiv. / Eur. J. Physiol.	1970	314	86-96	
ZDB-PUB-001102-1	11057671	Kim, C.H., Oda, T., Itoh, M., Jiang, D., Artinger, K.B., Chandrasekharappa, S.C., Driever, W., and Chitnis, A.B.	Repressor activity of Headless/Tcf3 is essential for vertebrate head formation	Nature	2000	407(6806)	913-916	
ZDB-PUB-001205-1	11081511	Neyt, C., Jagla, K., Thisse, C., Thisse, B., Haines, L., and Currie, P.D.	Evolutionary origins of vertebrate appendicular muscle	Nature	2000	408(6808)	82-86	
ZDB-PUB-001205-5	11099044	Guo, S., Yamaguchi, Y., Schilbach, S., Wada, T., Lee, J., Goddard, A., French, D., Handa, H., and Rosenthal, A.	A regulator of transcriptional elongation controls vertebrate neuronal development	Nature	2000	408(6810)	366-369	
ZDB-PUB-010405-2	11260715	Scott, I.C., Blitz, I.L., Pappano, W.N., Maas, S.A., Cho, K.W., and Greenspan, D.S.	Homologues of Twisted gastrulation are extracellular cofactors in antagonism of BMP signalling	Nature	2001	410(6827)	475-478	
ZDB-PUB-011109-2	11700560	Zhong, T.P., Childs, S., Leu, J.P., and Fishman, M.C.	Gridlock signalling pathway fashions the first embryonic artery	Nature	2001	414(6860)	216-220	
ZDB-PUB-020624-8	12066188	Ahn, D.-G., Kourakis, M.J., Rohde, L.A., Silver, L.M., and Ho, R.K.	T-box gene tbx5 is essential for formation of the pectoral limb bud	Nature	2002	417(6890)	754-758	
ZDB-PUB-040402-1	15057246	Söllner, C., Rauch, G-J., Siemens, J., Geisler, R., Schuster, S.C., The Tübingen 2000 Screen Consortium, Müller, U., and Nicolson, T.	Mutations in cadherin 23 affect tip links in zebrafish sensory hair cells	Nature	2004	428(6986)	955-959	
ZDB-PUB-040510-3	15129296	Yamashita, S., Miyagi, C., Fukada, T., Kagara, N., Che, Y.S., and Hirano, T.	Zinc transporter LIVI controls epithelial-mesenchymal transition in zebrafish gastrula organizer	Nature	2004	429(6989)	298-302	
ZDB-PUB-040719-4	15254551	Gong, Y., Mo, C., and Fraser, S.E.	Planar cell polarity signalling controls cell division orientation during zebrafish gastrulation	Nature	2004	430(7000)	689-693	
ZDB-PUB-041018-3	15483558	Corey, D.P., García-Añoveros, J., Holt, J.R., Kwan, K.Y., Lin, S.Y., Vollrath, M.A., Amalfitano, A., Cheung, E.L., Derfler, B.H., Duggan, A., Géléoc, G.S., Gray, P.A., Hoffman, M.P., Rehm, H.L., Tamasauskas, D., Zhang, D.S.	TRPA1 is a candidate for the mechanosensitive transduction channel of vertebrate hair cells	Nature	2004	432(7018)	723-730	
ZDB-PUB-050513-14	15889082	Kawakami, Y., Raya, A., Raya, R.M., Rodriguez-Esteban, C., and Izpisúa Belmonte, J.C.	Retinoic acid signalling links left-right asymmetric patterning and bilaterally symmetric somitogenesis in the zebrafish embryo	Nature	2005	435(7039)	165-171	
ZDB-PUB-050907-11	16136078	Corbit, K.C., Aanstad, P., Singla, V., Norman, A.R., Stainier, D.Y., and Reiter, J.F.	Vertebrate Smoothened functions at the primary cilium	Nature	2005	437(7061)	1018-1021	
ZDB-PUB-060313-13	16511496	Shaw, G.C., Cope, J.J., Li, L., Corson, K., Hersey, C., Ackermann, G.E., Gwynn, B., Lambert, A.J., Wingert, R.A., Traver, D., Trede, N.S., Barut, B.A., Zhou, Y., Minet, E., Donovan, A., Brownlie, A., Balzan, R., Weiss, M.J., Peters, L.L., Kaplan, J., Zon, L.I., and Paw, B.H.	Mitoferrin is essential for erythroid iron assimilation	Nature	2006	440(7080)	96-100	
ZDB-PUB-060703-7	16799568	Ober, E.A., Verkade, H., Field, H.A., and Stainier, D.Y.	Mesodermal Wnt2b signalling positively regulates liver specification	Nature	2006	442(7103)	688-691	
ZDB-PUB-060927-4	16988712	Vogeli, K.M., Jin, S.W., Martin, G.R., and Stainier, D.Y.	A common progenitor for haematopoietic and endothelial lineages in the zebrafish gastrula	Nature	2006	443(7109)	337-339	
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ZDB-PUB-980916-1	9389482	Slusarski, D., V. Corces, and R. Moon	Interaction of a Wnt and a Frizzled homologue triggers G-protein-linked phosphatidylinositol signaling	Nature	1997	390	410-413	
ZDB-PUB-980929-2	9744278	Sampath, K., Rubinstein, A.L., Cheng, A.H.S., Liang, J.O., Fekany, K., Solnica-Krezel, L., Korzh, V., Halpern, M.E., and Wright, C.V.E.	Induction of the zebrafish ventral brain and floorplate requires cyclops/nodal signalling	Nature	1998	395	185-189	
ZDB-PUB-961014-774	none	Meyer, A., Ritchie, P., and Witte, K.E.	Predicting developmental processes from evolutionary patterns: a molecular phylogeny of the zebrafish (Danio rerio) and its relatives	Phil. Trans. Roy. Soc. Lond., Series B	1995	349	103-111	
ZDB-PUB-051005-8	16199068	Morris, A.C., and Fadool, J.M.	Studying rod photoreceptor development in zebrafish	Physiol. Behav.	2005	86(3)	306-313	
ZDB-PUB-061020-58	17049956	Levin, E.D., Bencan, Z., and Cerutti, D.T.	Anxiolytic effects of nicotine in zebrafish	Physiol. Behav.	2007	90(1)	54-58	
ZDB-PUB-071001-4	17889042	López-Patiño, M.A., Yu, L., Cabral, H., and Zhdanova, I.V.	Anxiogenic effects of cocaine withdrawal in zebrafish	Physiol. Behav.	2008	93(1-2)	160-171	
ZDB-PUB-071009-1	17905328	Weber, D.N., Connaughton, V.P., Dellinger, J.A., Klemer, D., Udvadia, A., and Carvan, MJ 3rd.	Selenomethionine reduces visual deficits due to developmental methylmercury exposures	Physiol. Behav.	2008	93(1-2)	250-260	
ZDB-PUB-080527-19	18499199	López Patiño, M.A., Yu, L., Yamamoto, B.K., and Zhdanova, I.V.	Gender differences in zebrafish responses to cocaine withdrawal	Physiol. Behav.	2008	95(1-2)	36-47	
ZDB-PUB-080825-12	18671990	Bencan, Z., and Levin, E.D.	The role of alpha7 and alpha4beta2 nicotinic receptors in the nicotine-induced anxiolytic effect in zebrafish	Physiol. Behav.	2008	95(3)	408-412	
ZDB-PUB-090616-11	19486906	Blanco-Vives, B., and Sánchez-Vázquez, F.J.	Synchronisation to light and feeding time of circadian rhythms of spawning and locomotor activity in zebrafish	Physiol. Behav.	2009	98(3)	268-275	
ZDB-PUB-990105-1	9877412	Hurd, M.W., Debruyne, J., Straume, M., and Cahill, G.M.	Circadian rhythms of locomotor activity in zebrafish	Physiol. Behav.	1998	65	465-472	
ZDB-PUB-971203-7	9402625	Miklosi, A.,  Andrew, R.J., and Savage, H.	Behavioural lateralisation of the tetrapod type in the zebrafish (Brachydanio rerio)	Physiol. Behav.	1997	63(1)	127-135	
ZDB-PUB-961014-128	none	Breder, C.M. and Halpern, F.	Innate and acquired behaviour affecting the aggregation of fishes	Physiol. Zool.	1946	19	154-190	
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ZDB-PUB-061108-14	17083488	Zou, J., Beermann, F., Wang, J., Kawakami, K., and Wei, X.	The Fugu tyrp1 promoter directs specific GFP expression in zebrafish: tools to study the RPE and the neural crest-derived melanophores	Pigment Cell Res.	2006	19(6)	615-627	
ZDB-PUB-070330-21	17371438	Choi, T.Y., Kim, J.H., Ko, D.H., Kim, C.H., Hwang, J.S., Ahn, S., Kim, S.Y., Kim, C.D., Lee, J.H., and Yoon, T.J.	Zebrafish as a new model for phenotype-based screening of melanogenic regulatory compounds	Pigment Cell Res.	2007	20(2)	120-127	
ZDB-PUB-020218-5	11837453	Le Guyader, S. and Jesuthasan, S.	Analysis of xanthophore and pterinosome biogenesis in zebrafish using methylene blue and pteridine autofluorescence	Pigment Cell Res.	2002	15(1)	27-31	
ZDB-PUB-060531-2	16704454	Logan, D.W., Burn, S.F., and Jackson, I.J.	Regulation of pigmentation in zebrafish melanophores	Pigment Cell Res.	2006	19(3)	206-213	
ZDB-PUB-030527-11	12753383	Ziegler, I.	The Pteridine pathway in zebrafish: regulation and specification during the determination of neural crest cell-fate	Pigment Cell Res.	2003	16(3)	172-182	
ZDB-PUB-050318-4	15760335	Lynn Lamoreux, M., Kelsh, R.N., Wakamatsu, Y., and Ozato, K.	Pigment pattern formation in the medaka embryo	Pigment Cell Res.	2005	18(2)	64-73	
ZDB-PUB-060531-3	16704457	Mellgren, E.M., and Johnson, S.L.	pyewacket, a new zebrafish fin pigment pattern mutant	Pigment Cell Res.	2006	19(3)	232-238	
ZDB-PUB-060719-7	16827750	Maldonado, E., Hernandez, F., Lozano, C., Castro, M.E., and Navarro, R.E.	The zebrafish mutant vps18 as a model for vesicle-traffic related hypopigmentation diseases	Pigment Cell Res.	2006	19(4)	315-326	
ZDB-PUB-051107-16	16260744	Castellano, S., Lobanov, A.V., Chapple, C., Novoselov, S.V., Albrecht, M., Hua, D., Lescure, A., Lengauer, T., Krol, A., Gladyshev, V.N., and Guigo, R.	Diversity and functional plasticity of eukaryotic selenoproteins: Identification and characterization of the SelJ family	Proc Natl Acad Sci U S A. 2002	2005	102(45)	16188-16193	
ZDB-PUB-961014-920	none	Ramanujam, S.K. and Ratha, B.K.	Glucose-6-phosphate dehydrogenase (G6PDH) and lactate dehydrogenase (LDH) activities in two air breathing and two gill breathing species of fish - A comparative study	Proc. Indian Natl. Sci. Acad. (B)	1980	46	168-171	
ZDB-PUB-961014-1180		VanRee, G.E.	Histological and enzyme-histochemical study of the ovary of zebrafish, Brachydanio rerio Ham. Buch., in vitro: I. Effects of duration of cultivation on the ovaries in organ culture	Proc. K. Ned. Akad. Wet. Ser. C. Biol. Med. Sci.	1977	80	313-322	
ZDB-PUB-961014-1183		VanRee, G.E., Lok, D., and Bosman, G.J.C.G.M.	In vitro induction of nuclear breakdown in oocytes of the zebrafish, Brachydanio rerio (Ham. Buch.): effects of the composition of the medium and of protein and steriod hormones	Proc. K. Ned. Akad. Wet. Ser. C. Biol. Med. Sci.	1977	80	353-371	
ZDB-PUB-961014-1181	none	VanRee, G.E.	Histological and enzyme-histochemical study of the ovary of zebrafish, Brachydanio rerio Ham. Buch., in vitro: II. Effects of ovine luteinizing hormone, carp gonad hormone and 11-deoxycorticosteron-acetate on ovarian fragments in short-term org	Proc. K. Ned. Akad. Wet. Ser. C. Biol. Med. Sci.	1977	80	323-340	
ZDB-PUB-961014-1195		Vishwanath, W. and Singh, H.T.	On a collection of some endemic fishes from Manipur India	Proc. Natl. Acad. Sci. India Sect. B (Biol. Sci)	1987	57	109-115	
ZDB-PUB-961014-1178		VanRee, G.E.	Effects of Methallibure (I.C.I. 33.828) and ovineleutinizing hormone on the ovary and the pituitary of the female zebrafish, Brachydanio rerio. I	Proc. Ned. Acad. Wet. Ser. C. Biol. Med. Sci.	1976	79	150-161	
ZDB-PUB-961014-1179	none	VanRee, G.E.	Effects of Methallibure (I.C.I. 33.828) and ovineleutinizing hormone on the ovary and the pituitary of the female zebrafish, Brachydanio rerio. II	Proc. Ned. Acad. Wet. Ser. C. Biol. Med. Sci.	1976	79	162-170	
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ZDB-PUB-961014-817	none	Nandi, J.	Interrenal morphology of some Indian cyprinid fishes	Proc. Zool. Soc. Calcutta	1965	18	1-9	
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ZDB-PUB-961014-572	7156394	Kimmel, C.B.	Reticulospinal and vestibulospinal neurons in the young larva of a teleost fish, Brachydanio rerio	Prog. Brain Res.	1982	57	1-23	
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ZDB-PUB-010705-18	11420970	Li, L.	Genetic and epigenetic analysis of visual system functions of zebrafish	Prog. Brain Res.	2001	131	555-563	
ZDB-PUB-961014-1188	1410415	Vigh-Teichmann, I., Ali, M.A., and Vigh, B.	Comparative ultrastructure and opsin immunocytochemistry of the retina and pineal organ in fish	Prog. Brain Res.	1992	91	307-313	
ZDB-PUB-000515-3	10727779	Hendricks, J.C., Sehgal, A., and Pack, A.I.	The need for a simple animal model to understand sleep	Prog. Neurobiol.	2000	61(4)	339-351	
ZDB-PUB-030728-11	12880634	Lewis, K.E. and Eisen, J.S.	From cells to circuits: development of the zebrafish spinal cord	Prog. Neurobiol.	2003	69(6)	419-449	
ZDB-PUB-030117-11	12450489	Drapeau, P., Saint-Amant, L., Buss, R.R., Chong, M., McDearmid, J.R., and Brustein E.	Development of the locomotor network in zebrafish	Prog. Neurobiol.	2002	68(2)	85-111	
ZDB-PUB-020906-2	11809925	McFadyen, I.J., Metzger, T.G., Paterlini, M.G. and Ferguson, D.M.	Exploring the unique pharmacology of a novel opioid receptor, ZFOR1, using molecular modeling and the 'message-address' concept	Protein Eng.	2001	14(12)	953-960	
ZDB-PUB-020605-2	12034864	Chang, C.-C., Tsai, C.-T., and Chang, C.-Y.	Structural restoration of inactive recombinant fish growth hormones by chemical chaperonin and solvent restraint approaches	Protein Eng.	2002	15(5)	437-441	
ZDB-PUB-031103-22	14569914	Satora, L. and Morawska, J.	In Process Citation (in Polish)	Przegl Lek.	2003	60(4)	311-313	
ZDB-PUB-981110-15	none	Larhammar, D., Berglund, M.M., and Lundell, I.	Multiplicity of NPY receptors - an evolutionary perspective	Reg. Pep.	1997	71	209	
ZDB-PUB-961014-1204	none	Wacker, S., Herrmann, K., and Berking, S.	The orientation of the dorsal/ventral axis of zebrafish is influenced by gravitation	Roux's Arch. Dev. Biol.	1994	203	281-283	
ZDB-PUB-961014-859	none	Papan, C. and Campos-Ortega, J.A.	On the formation of the neural keel and neural tube in the zebrafish Danio (Brachydanio rerio)	Roux's Arch. Dev. Biol.	1994	203	178-186	
ZDB-PUB-961219-16	none	Muller, M., Von, Weizsacker, E., and Campos-Ortega, J.A.	Transcription of a zebrafish gene of the hairy-Enhancer of split family delineates the midbrain anlage in the neural plate	Roux's Arch. Dev. Biol.	1996	206(2)	153-160	
ZDB-PUB-970327-7	none	Mizuno, T., Yamaha, E., and Yamazaki, F.	Localized axis determinant in the early cleavage embryo of the goldfish, Carassius auratus	Roux's Arch. Dev. Biol.	1997	206(6)	389-396	
ZDB-PUB-961014-1000	none	Schmitz, B. and Campos-Ortega, J.A.	Dorso-ventral polarity of the zebrafish embryo is distinguishable prior to the onset of gastrulation	Roux's Arch. Dev. Biol.	1994	203	374-380	
ZDB-PUB-961014-1001	none	Schmitz, B., Papan, C., and Campos-Ortega, J.A.	Neurulation in the anterior trunk region of the zebrafish Brachydanio rerio	Roux's Arch. Dev. Biol.	1993	202	250-259	
ZDB-PUB-961014-735	none	Marsh-Armstrong, N., McCaffery, P., Hyatt, G., Alonso, L., Dowling, J.E., Gilbert, W., and Dräger, U.C.	Retinoic acid in the anteroposterior patterning of the zebrafish trunk	Roux's Arch. Dev. Biol.	1995	205	103-113	
ZDB-PUB-961014-983		Schalkoff, M.E. and Hart, N.H.	Effects of A23187 upon cortical granule exocytosis in eggs of Brachydanio	Roux's Arch. Dev. Biol.	1986	195	39-48	
ZDB-PUB-961219-15	none	McCarthy, R.A., Sun, M., Taylor, J.C., and Smith, D.	Polar effects of lithium in the heart of the zebrafish Danio rerio	Roux's Arch. Dev. Biol.	1996	206(2)	102-109	
ZDB-PUB-961014-125	1307780	Braunbeck, T., Burkhardt-Holm, P., Gorge, G., Nagel, R., Negele, R.D., and Storch, V.	Rainbow trout and zebrafish, two models for continuous toxicity tests: relative sensitivity species and organ specificity in cytopathologic reaction of liver and intestines to atrazine	Schriftenr-Ver-Wasser-Boden-Lufthyg.	1992	89	109-145	
ZDB-PUB-010807-30	11453295	Carvan III, M.J., Sonntag, D.M., Cmar, C.B., Cook, R.S., Curran, M.A., and Miller, G.L.	Oxidative stress in zebrafish cells: potential utility of transgenic zebrafish as a deployable sentinel for site hazard ranking	Sci. Total Environ.	2001	274(1-3)	183-196	
ZDB-PUB-030716-23	12798098	van den Belt, K., Verheyen, R., and Witters, H.	Effects of 17alpha-ethynylestradiol in a partial life-cycle test with zebrafish (Danio rerio): effects on growth, gonads and female reproductive success	Sci. Total Environ.	2003	309(1-3)	127-137	
ZDB-PUB-060501-12	16643987	Tao, L., Shiwei, J., Yang, F.X., Yang, H., and Ying, X.	An enzyme-linked immunosorbent assay for rare minnow (Gobiocypris rarus) vitellogenin and comparison of vitellogenin responses in rare minnow and zebrafish (Danio rerio)	Sci. Total Environ.	2006	364(1-3)	284-294	
ZDB-PUB-961014-51	2467376	Ansari, B.A. and Kumar, K.	Diazinon toxicity effect on protein and nucleic acid metabolism in the liver of zebrafish Brachydanio-rerio cyrinidae	Sci. Total Environ.	1988	76	63-68	
ZDB-PUB-961014-541	7481748	Keizer, J., D'Agostino, G., Nagel, R., Volpe, T., Gnemi, P., and Vittozzi, L.	Enzymological differences of AchE and diazinon hepatic metabolism: correlation of in vitro data with the selective toxicity of diazinon in fish species	Sci. Total Environ.	1995	171(1-3)	213-220	
ZDB-PUB-961101-31	\ 	Ansari, B.A. and Kumar, K.	Diazinon toxicity: effect on protein and nucleic acid metabolism in the liver of the zebrafish, Brachydanio rerio (Cyprinidae)	Sci. Total Environ.	1988	76	63-68	
ZDB-PUB-981106-3	none	Gallo, D., Merendino, A., Keizer, J., and Vittozzi, L.	Acute toxicity of two carbamates to the Guppy (Poecilia reticulata) and the zebrafish (Brachydanio rerio)	Sci. Total Environ.	1995	171	131-136	
ZDB-PUB-961104-11	1815362	Zok, S., Gorge, G., Kalsch, W., and Nagel, R.	Bioconcentration, metabolism and toxicity of substituted anilines in the zebrafish (Brachydanio rerio)	Sci. Total Environ.	1991	110	411-421	
ZDB-PUB-010306-12	11187784	Kawakami, K.	Insertional mutagenesis in zebrafish and a proviral insertional mutation hagoromo (in Japanese)	Tanpakushitsu Kakusan Koso.	2000	(Suppl. 17) 45	2810-2819	
ZDB-PUB-020403-1	11840675	Ando, H., Okamoto, H., and Furuta, T.	Development of a new technology to manipulate gene activity by photo-illumination using a new DNA/RNA caging compound, Bhc-diazo	Tanpakushitsu Kakusan Koso.	2002	47(2)	125-132	
ZDB-PUB-010306-10	11187787	Shimoda, N.	Zebrafish gene mapping (in Japanese)	Tanpakushitsu Kakusan Koso.	2000	(Suppl. 17) 45	2838-2843	
ZDB-PUB-010306-13	11187783	Wada, H., Okamoto, H., and Higashijima, S.	Study of mechanisms for the axonal pathfinding of the trigeminal motor neurons by using transgenic zebrafish (in Japanese)	Tanpakushitsu Kakusan Koso.	2000	(Suppl. 17) 45	2803-2809	
ZDB-PUB-020130-1	11802411	Kawakami, K.	Functional analysis of zebrafish genes by insertional mutagenesis	Tanpakushitsu Kakusan Koso.	2001	(Suppl. 16) 46	2456-2460	
ZDB-PUB-030115-28	12486933	Takeda, H.	Wave and somite segmentation: a view from zebrafish genetic analyses	Tanpakushitsu Kakusan Koso.	2002	47(15)	2017-2023	
ZDB-PUB-041029-5	15508709	Kotani, T., and Kawakami K.	The transposon-mediated gene trap method in Zebrafish	Tanpakushitsu Kakusan Koso.	2004	49(13)	2111-2116	
ZDB-PUB-961014-31	8532883	Amanuma, K., Hamada, Y., and Takeda, H.	Transgene expression and integration in the zebrafish, Danio rerio	Tanpakushitsu Kakusan Koso.	1995	40	2257-2264	
ZDB-PUB-000309-20	10707624	Okamoto, H., Kikuchi, H., and Segawa, H.	Islet-1 family and neural differentiation: study using zebrafish embryos. (in Japanese)	Tanpakushitsu Kakusan Koso.	2000	(Suppl. 3) 45	233-240	
ZDB-PUB-010306-11	11187786	Ando, H. and Mishina, M.	Mutagenesis in zebrafish (in Japanese)	Tanpakushitsu Kakusan Koso.	2000	(Suppl. 17) 45	2829-2837	
ZDB-PUB-010306-8	11187789	Kawakami, A.	Zebrafish genetics and genomics (in Japanese)	Tanpakushitsu Kakusan Koso.	2000	(Suppl. 17) 45	2853-2863	
ZDB-PUB-961014-417	7754056	Hatta, K.	Genetic control of brain formation	Tanpakushitsu Kakusan Koso.	1995	40	709-714	
ZDB-PUB-961101-21	8284440	Hatta, K.	Genetic control of early zebrafish development	Tanpakushitsu Kakusan Koso.	1993	38	2433-2442	
ZDB-PUB-040326-10	15036969	Robles, V., Cabrita, E., De Paz, P., Cunado, S., Anel, L., and Herraez, M.P.	Effect of a vitrification protocol on the lactate dehydrogenase and glucose-6-phosphate dehydrogenase activities and the hatching rates of Zebrafish (Danio rerio) and Turbot (Scophthalmus maximus) embryos	Theriogenology	2004	61(7-8)	1367-1379	
ZDB-PUB-071009-12	17919716	Pei, D.S., Sun, Y.H., Chen, S.P., Wang, Y.P., Hu, W., and Zhu, Z.Y.	Identification of differentially expressed genes from the cross-subfamily cloned embryos derived from zebrafish nuclei and rare minnow enucleated eggs	Theriogenology	2007	68(9)	1282-1291	
ZDB-PUB-071108-4	17964638	Guan, M., Rawson, D.M., and Zhang, T.	Development of a new method for isolating zebrafish oocytes (Danio rerio) from ovary tissue masses	Theriogenology	2008	69(3)	269-275	
ZDB-PUB-071125-29	18031801	Lahnsteiner, F.	The effect of internal and external cryoprotectants on zebrafish (Danio rerio) embryos	Theriogenology	2008	69(3)	384-396	
ZDB-PUB-090309-7	19250661	Tsai, S., Rawson, D.M., and Zhang, T.	Development of cryopreservation protocols for early stage zebrafish (Danio rerio) ovarian follicles using controlled slow cooling	Theriogenology	2009	71(8)	1226-1233	
ZDB-PUB-090505-11	19406462	Lahnsteiner, F.	Factors affecting chilled storage of zebrafish (Danio rerio) embryos	Theriogenology	2009	72(3)	333-340	
ZDB-PUB-030211-8	12559459	Zhang, T., Liu, X.-H., and Rawson, D.M.	Effects of methanol and developmental arrest on chilling injury in zebrafish (Danio rerio) embryos	Theriogenology	2003	59(7)	1545-1546	
ZDB-PUB-060412-1	16580717	Zhang, T., Wang, R.Y., Bao, Q.Y., and Rawson, D.M.	Development of a new rapid measurement technique for fish embryo membrane permeability studies using impedance spectroscopy	Theriogenology	2006	66(4)	982-988	
ZDB-PUB-061227-16	17137620	Wilson-Leedy, J.G., and Ingermann, R.L.	Development of a novel CASA system based on open source software for characterization of zebrafish sperm motility parameters	Theriogenology	2007	67(3)	661-672	
ZDB-PUB-080826-5	18692889	Liu, J., Sun, Y.H., Wang, Y.W., Wang, N., Pei, D.S., Wang, Y.P., Hu, W., and Zhu, Z.Y.	Identification of differential transcript profiles between mutual crossbred embryos of zebrafish (Danio rerio) and Chinese rare minnow (Gobiocypris rarus) by cDNA-AFLP	Theriogenology	2008	70(9)	1525-1535	
ZDB-PUB-081001-12	18817964	Dai, L., Ma, W., Li, J., Xu, Y., Li, W., Zhao, Y., and Deng, F.	Cloning and characterization of a novel oocyte-specific gene zorg in zebrafish	Theriogenology	2009	71(3)	441-449	
ZDB-PUB-090217-17	19201018	Lin, C., Spikings, E., Zhang, T., and Rawson, D.	Housekeeping genes for cryopreservation studies on zebrafish embryos and blastomeres	Theriogenology	2009	71(7)	1147-1155	
ZDB-PUB-010705-6	11393222	Liu, X.H., Zhang, T., and Rawson, D.M.	Effect of cooling rate and partial removal of yolk on the chilling injury in zebrafish (Danio rerio) embryos	Theriogenology	2001	55(8)	1719-1731	
ZDB-PUB-050930-8	16182874	Adams, S.L., Zhang, T., and Rawson, D.M.	The effect of external medium composition on membrane water permeability of zebrafish (Danio rerio) embryos	Theriogenology	2005	64(7)	1591-1602	
ZDB-PUB-070625-6	17544099	Yang, H., Carmichael, C., Varga, Z.M., and Tiersch, T.R.	Development of a simplified and standardized protocol with potential for high-throughput for sperm cryopreservation in zebrafish Danio rerio	Theriogenology	2007	68(2)	128-136	
ZDB-PUB-090204-34	19185341	Wilson-Leedy, J.G., Kanuga, M.K., and Ingermann, R.L.	Influence of osmolality and ions on the activation and characteristics of zebrafish sperm motility	Theriogenology	2009	71(7)	1054-1062	
ZDB-PUB-090413-2	19349071	Zampolla, T., Zhang, T., Holt, W.V., and Rawson, D.M.	Distributional arrangement of mitochondria in the granulosa cells surrounding stage III zebrafish (Danio rerio) oocytes	Theriogenology	2009	72(1)	111-119	
ZDB-PUB-040415-6	15081266	Incardona, J.P., Collier, T.K., and Scholz, N.L.	Defects in cardiac function precede morphological abnormalities in fish embryos exposed to polycyclic aromatic hydrocarbons	Toxicol. Appl. Pharmacol.	2004			
ZDB-PUB-040702-1	14678746	Langheinrich, U., Vacun, G., and Wagner, T.	Zebrafish embryos express an orthologue of HERG and are sensitive toward a range of QT-prolonging drugs inducing severe arrhythmia	Toxicol. Appl. Pharmacol.	2003	193(3)	370-382	
ZDB-PUB-050711-1	15990136	Huuskonen, H.	New models and molecular markers in evaluation of developmental toxicity	Toxicol. Appl. Pharmacol.	2005	207(2 Suppl)	495-500	
ZDB-PUB-050803-8	16051294	Teraoka, H., Urakawa, S., Nanba, S., Nagai, Y., Dong, W., Imagawa, T., Tanguay, R.L., Svoboda, K., Handley-Goldstone, H.M., Stegeman, J.J., and Hiraga, T.	Muscular contractions in the zebrafish embryo are necessary to reveal thiuram-induced notochord distortions	Toxicol. Appl. Pharmacol.	2006	212(1)	24-34	
ZDB-PUB-060703-4	16797628	Tilton, F., La Du, J.K., Vue, M., Alzarban, N., and Tanguay, R.L.	Dithiocarbamates have a common toxic effect on zebrafish body axis formation	Toxicol. Appl. Pharmacol.	2006	216(1)	55-68	
ZDB-PUB-061205-5	17112560	Incardona, J.P., Day, H.L., Collier, T.K., and Scholz, N.L.	Developmental toxicity of 4-ring polycyclic aromatic hydrocarbons in zebrafish is differentially dependent on AH receptor isoforms and hepatic cytochrome P4501A metabolism	Toxicol. Appl. Pharmacol.	2006	217(3)	308-321	
ZDB-PUB-080327-11	18358510	Raldúa, D., André, M., and Babin P.J.	Clofibrate and gemfibrozil induce an embryonic malabsorption syndrome in zebrafish	Toxicol. Appl. Pharmacol.	2008	228(3)	301-314	
ZDB-PUB-090106-40	19121331	Thomas, L.T., Welsh, L., Galvez, F., and Svoboda, K.	Acute nicotine exposure and modulation of a spinal motor circuit in embryonic zebrafish	Toxicol. Appl. Pharmacol.	2009	239(1)	1-12	
ZDB-PUB-090112-24	19133284	Cheng, J., Chan, C.M., Veca, L.M., On, W.L., Chan, P.K., Qu, L., Sun, Y.P., and Cheng, S.H.	Acute and long-term effects after single loading of functionalized multi-walled carbon nanotubes into zebrafish (Danio rerio)	Toxicol. Appl. Pharmacol.	2009	235(2)	216-225	
ZDB-PUB-090310-12	19263520	Cordero, M.D., Moreno-Fernández, A.M., Gomez-Skarmeta, J.L., de Miguel, M., Garrido-Maraver, J., Oropesa-Avila, M., Rodríguez-Hernández, A., Navas, P., and Sánchez-Alcázar, J.A.	Coenzyme Q(10) and alpha-tocopherol protect against amitriptyline toxicity	Toxicol. Appl. Pharmacol.	2009	235(3)	329-337	
ZDB-PUB-961014-1126	1135874	Thomas, R.J.	The toxicologic and teratologic effects of d-9-tetra-hydrocannabinol in the zebrafish embryo	Toxicol. Appl. Pharmacol.	1975	32	184-190	
ZDB-PUB-091204-17	19931292	Deng, J., Liu, C., Yu, L., and Zhou, B.	Chronic exposure to environmental levels of tribromophenol impairs zebrafish reproduction	Toxicol. Appl. Pharmacol.	2010	243(1)	87-95	
ZDB-PUB-100105-41	20045017	van Boxtel, A.L., Kamstra, J.H., Fluitsma, D.M., and Legler, J.	Dithiocarbamates are teratogenic to developing zebrafish through inhibition of lysyl oxidase activity	Toxicol. Appl. Pharmacol.	2009	\ 	\ 	
ZDB-PUB-050603-8	15922010	Tseng, H.P., Hseu, T.H., Buhler, D.R., Wang, W.D., and Hu, C.H.	Constitutive and xenobiotics-induced expression of a novel CYP3A gene from zebrafish larva	Toxicol. Appl. Pharmacol.	2005	205(3)	247-258	
ZDB-PUB-070504-6	17445853	Jonsson, M.E., Orrego, R., Woodin, B.R., Goldstone, J.V., and Stegeman, J.J.	Basal and 3,3',4,4',5-pentachlorobiphenyl-induced expression of cytochrome P450 1A, 1B and 1C genes in zebrafish	Toxicol. Appl. Pharmacol.	2007	221(1)	29-41	
ZDB-PUB-070907-27	17764713	King Heiden, T.C., Dengler, E., Kao, W.J., Heideman, W., and Peterson, R.E.	Developmental toxicity of low generation PAMAM dendrimers in zebrafish	Toxicol. Appl. Pharmacol.	2007	225(1)	70-79	
ZDB-PUB-080306-24	18299140	Usenko, C.Y., Harper, S.L., and Tanguay, R.L.	Fullerene C(60) exposure elicits an oxidative stress response in embryonic zebrafish	Toxicol. Appl. Pharmacol.	2008	229(1)	44-55	
ZDB-PUB-080415-18	18407306	Shi, X., Du, Y., Lam, P.K., Wu, R.S., and Zhou, B.	Developmental toxicity and alteration of gene expression in zebrafish embryos exposed to PFOS.	Toxicol. Appl. Pharmacol.	2008	230(1)	23-32	
ZDB-PUB-090422-11	19371759	Yin, N., Jin, X., He, J., and Yin, Z.	Effects of Adrenergic Agents on the Expression of Zebrafish (Danio rerio) Vitellogenin Ao1	Toxicol. Appl. Pharmacol.	2009	238(1)	20-26	
ZDB-PUB-971103-4	9299598	Troxel, C.M., D.R. Buhler, J.D. Hendricks, and G.S. Bailey	CYP1A induction by beta-naphthoflavone, Aroclor 1254, and 2,3,7,8-tetrachlorodibenzo-p-dioxin and its influence on aflatoxin B1 metabolism and DNA adduction in zebrafish (Danio rerio)	Toxicol. Appl. Pharmacol.	1997	146(1)	69-78	
ZDB-PUB-070625-21	17559897	Lin, C.C., Hui, M.N., and Cheng, S.H.	Toxicity and cardiac effects of carbaryl in early developing zebrafish (Danio rerio) embryos	Toxicol. Appl. Pharmacol.	2007	222(2)	159-168	
ZDB-PUB-070827-7	17706735	Blechinger, S.R., Kusch, R.C., Haugo, K., Matz, C., Chivers, D.P., and Krone, P.H.	Brief embryonic cadmium exposure induces a stress response and cell death in the developing olfactory system followed by long-term olfactory deficits in juvenile zebrafish	Toxicol. Appl. Pharmacol.	2007	224(1)	72-80	
ZDB-PUB-071009-2	17905400	Seok, S.H., Baek, M.W., Lee, H.Y., Kim, D.J., Na, Y.R., Noh, K.J., Park, S.H., Lee, H.K., Lee, B.H., Ryu, D.Y., and Park, J.H.	Quantitative GFP fluorescence as an indicator of arsenite developmental toxicity in mosaic heat shock protein 70 transgenic zebrafish	Toxicol. Appl. Pharmacol.	2007	225(2)	154-161	
ZDB-PUB-080826-9	18694773	Welsh, L., Tanguay, R.L., and Svoboda, K.R.	Uncoupling nicotine mediated motoneuron axonal pathfinding errors and muscle degeneration in zebrafish	Toxicol. Appl. Pharmacol.	2009	237(1)	29-40	
ZDB-PUB-080902-8	18725242	Thorsteinson, N., Ban, F., Santos-Filho, O., Tabaei, S.M., Miguel-Queralt, S., Underhill, C., Cherkasov, A., and Hammond, G.L.	In silico identification of anthropogenic chemicals as ligands of zebrafish sex hormone binding globulin	Toxicol. Appl. Pharmacol.	2009	234(1)	47-57	
ZDB-PUB-081029-23	18952116	Teraoka, H., Kubota, A., Dong, W., Kawai, Y., Yamazaki, K., Mori, C., Harada, Y., Peterson, R.E., and Hiraga, T.	Role of the cyclooxygenase 2-thromboxane pathway in 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced decrease in mesencephalic vein blood flow in the zebrafish embryo	Toxicol. Appl. Pharmacol.	2009	234(1)	33-40	
ZDB-PUB-090106-9	19100278	Chow, E.S., Hui, M.N., Cheng, C.W., and Cheng, S.H.	Cadmium affects retinogenesis during zebrafish embryonic development	Toxicol. Appl. Pharmacol.	2009	235(1)	68-76	
ZDB-PUB-961014-139	8236256	Buchmann, A., Wannemacher, R., Kulzer, E., Buhler, D.R., and Bock, K.W.	Immunohistochemical localization of the cytochrome P450 isozymes LMC2 and LM4B (P4501A1) in 2,3,7,8-tetrachlorodibenzo-p-dioxin-treated zebrafish (Brachydanio rerio)	Toxicol. Appl. Pharmacol.	1993	123	160-169	
ZDB-PUB-970403-6	9073610	Troxel, C.M., Reddy, A.P., O'Neal, P.E., Hendricks, J.D., and Bailey, G.S.	In vivo aflatoxin B1 metabolism and hepatic DNA adduction in zebrafish (Danio rerio)	Toxicol. Appl. Pharmacol.	1997	143(1)	213-220	
ZDB-PUB-990824-35	10448124	Abnet, C.C., Tanguay, R.L., Heideman, W., and Peterson, R.E.	Transactivation activity of human, zebrafish, and rainbow trout aryl hydrocarbon receptors expressed in COS-7 cells: greater insight into species differences in toxic potency of polychlorinated dibenzo-p-dioxin, dibenzofuran, and biphenyl conge	Toxicol. Appl. Pharmacol.	1999	159(1)	41-51	
ZDB-PUB-001018-5	11026607	Spitsbergen, J.M., Tsai, H.W., Reddy, A., Miller, T., Arbogast, D., Hendricks, J.D., and Bailey, G.S.	Neoplasia in zebrafish (Danio rerio) treated with 7,12-dimethylbenz[a]anthracene by two exposure routes at different developmental stages	Toxicol. Pathol.	2000	28(5)	705-715	
ZDB-PUB-041228-5	15603536	Mizgireuv, I.V., Majorova, I.G., Gorodinskaya, V.M., Khudoley, V.V., and Revskoy, S.Y.	Carcinogenic effect of N-nitrosodimethylamine on diploid and triploid zebrafish (Danio rerio)	Toxicol. Pathol.	2004	32(5)	514-518	
ZDB-PUB-001018-4	11026608	Spitsbergen, J.M., Tsai, H.W., Reddy, A., Miller, T., Arbogast, D., Hendricks, J.D., and Bailey, G.S.	Neoplasia in zebrafish (Danio rerio) treated with N-methyl-N'-nitro-N-nitrosoguanidine by three exposure routes at different developmental stages	Toxicol. Pathol.	2000	28(5)	716-725	
ZDB-PUB-040621-6	12597434	Spitsbergen, J.M., and Kent, M.L.	The State of the Art of the Zebrafish Model for Toxicology and Toxicologic Pathology Research--Advantages and Current Limitations	Toxicol. Pathol.	2003	(Suppl.) 31	62-87	
ZDB-PUB-040920-2	15371195	Mizgireuv, I., Majorova, I., Gorodinskaya, V., Khudoley, V., and Revskoy, S.	Carcinogenic Effect of N-Nitrosodimethylamine on Diploid and Triploid Zebrafish (Danio rerio)	Toxicol. Pathol.	2004	32(5)	514-518	
ZDB-PUB-050203-2	15683868	Wang, P.J., Chien, M.S., Wu, F.J., Chou, H.N., and Lee, S.J.	Inhibition of embryonic development by microcystin-LR in zebrafish, Danio Rerio	Toxicon.	2005	45(3)	303-308	
ZDB-PUB-090731-12	19638282	Suyama, T.L., Cao, Z., Murray, T.F., and Gerwick, W.H.	Ichthyotoxic Brominated Diphenyl Ethers from a Mixed Assemblage of a Red Alga and Cyanobacterium: Structure Clarification and Biological Properties	Toxicon.	2010	55(2-3)	204-210	
ZDB-PUB-061226-8	15990144	Mebs, D., and Kauferstein, S.	Ichthyotoxicity caused by marine cone snail venoms?	Toxicon.	2005	46(3)	355-356	
ZDB-PUB-081218-38	19087885	Berry, J.P., Gibbs, P.D., Schmale, M.C., and Saker, M.L.	Toxicity of cylindrospermopsin, and other apparent metabolites from Cylindrospermopsis raciborskii and Aphanizomenon ovalisporum, to the zebrafish (Danio rerio) embryo	Toxicon.	2009	53(2)	289-299	
ZDB-PUB-961014-166	none	Cherdantseva, E.M. and Cherdantsev, V.G.	Determination of dorso-vertical polarity in embryos of Brachydanio rerio (Teleostei). Ontogenz 16:270-280	Translated in Soviet J. Dev. Biol.	1985	16	165-173	
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ZDB-PUB-041004-3	15381194	van der Sar, A.M., Appelmelk, B.J., Vandenbroucke-Grauls, C.M., and Bitter, W.	A star with stripes: zebrafish as an infection model	Trends Microbiol.	2004	12(10)	451-457	
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ZDB-PUB-020130-4	11809482	Ren, J.Q., McCarthy, W.R., Zhang, H., Adolph, A.R., and Li, L.	Behavioral visual responses of wild-type and hypopigmented zebrafish	Vision Research	2002	42(3)	293-299	
ZDB-PUB-020227-2	11853770	Vihtelic, T.S. and Hyde, D.R.	Zebrafish mutagenesis yields eye morphological mutants with retinal and lens defects	Vision Research	2002	42(4)	535-540	
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ZDB-PUB-090116-17	19136023	Sukumaran, S., and Perkins, B.D.	Early defects in photoreceptor outer segment morphogenesis in zebrafish ift57, ift88 and ift172 Intraflagellar Transport mutants	Vision Research	2009	49(4)	479-489	
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ZDB-PUB-980210-47	9667001	Brockerhoff, S.E., Dowling, J.E., and Hurley, J.B.	Zebrafish retinal mutants	Vision Research	1998	38	1335-1339	
ZDB-PUB-990405-9	10343824	Saszik, S. and Bilotta, J.	The effects of temperature on the dark-adapted spectral sensitivity function of the adult zebrafish	Vision Research	1999	39	1051-1058	
ZDB-PUB-030115-22	12505601	Maaswinkel, H. and Li, L.	Spatio-temporal frequency characteristics of the optomotor response in zebrafish	Vision Research	2003	43(1)	21-30	
ZDB-PUB-961014-820	3832580	Nawrocki, L., BreMiller, R., Streisinger, G., and Kaplan, M.	Larval and adult visual pigments of the zebrafish, Brachydanio rerio	Vision Research	1985	25	1569-1576	
ZDB-PUB-020227-1	11853769	Malicki, J.J., Pujic, Z., Thisse, C., Thisse, B., and Wei, X.	Forward and reverse genetic approaches to the analysis of eye development in zebrafish	Vision Research	2002	42(4)	527-533	
ZDB-PUB-030408-13	12668059	Russell, C.	The roles of Hedgehogs and Fibroblast Growth Factors in eye development and retinal cell rescue	Vision Research	2003	43(8)	899-912	
ZDB-PUB-030602-7	12726833	Krauss, A. and Neumeyer, C.	Wavelength dependence of the optomotor response in zebrafish (Danio rerio)	Vision Research	2003	43(11)	1275-1284	
ZDB-PUB-050209-11	15695184	Yurco, P., and Cameron, D.A.	Responses of Muller glia to retinal injury in adult zebrafish	Vision Research	2005	45(8)	991-1002	
ZDB-PUB-060403-1	16564068	Risner, M.L., Lemerise, E., Vukmanic, E.V., and Moore, A.	Behavioral spectral sensitivity of the zebrafish (Danio rerio)	Vision Research	2006	46(17)	2625-2635	
ZDB-PUB-961014-1012		Schwanzara, S.A.	The visual pigments of freshwater fishes	Vision Research	1967	14	545-550	
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ZDB-PUB-961014-8		Dasqupta, J.D. and Singh, U.N.	Spatio-temporal distribution of gap junctions in zebra fish embryo	W. Roux's Arch. Dev. Biol.	1982	191	378-380	
ZDB-PUB-961014-611		Kirschbaum, F.	Investigations on the colour pattern of the zebrafish Brachydanio rerio (Cyprindae, Teleostei)	W. Roux's Arch. Dev. Biol.	1975	177	129-152	
ZDB-PUB-041130-1	15552045	Guo, Y.Q., Cheng, H.H., Gao, S., and Zhou, R.J.	Phylogenetic tree and synteny of DMRT genes family of vertebrates	Yi Chuan Xue Bao	2004	31(10)	1103-1108	
ZDB-PUB-060207-17	16450586	Shang, X., He, Y., Zhang, L., Chen, B., He, C.J., Cheng, H.H., and Zhou, R.J.	Molecular cloning of the rice field eel Nup93 with predominant expression in gonad and kidney	Yi Chuan Xue Bao	2006	33(1)	41-48	
ZDB-PUB-041012-3	15473329	Qi, F., Lin, S., and Fan, Q.C.	Development of retrovirus-mediated insertional mutagenesis in zebrafish and its application in saturation mutagenesis and gene screening	Yi Chuan Xue Bao	2004	31(7)	750-757	
ZDB-PUB-041014-3	15478607	Zhou, F., Zhao, G., Liu, J.D., Chen, J., Zhang, X.Y., Yu, Q.X.	Advanced methods of preparing pachytene bivalents and high resolution multiple bands of zebrafish (Danio rerio)	Yi Chuan Xue Bao	2004	31(5)	474-479	
ZDB-PUB-041130-2	15552054	Wu, Y.P., Xiong, Q., Zhang, G.X., and Xu, A.L.	The research progress of zebrafish gene engineering	Yi Chuan Xue Bao	2004	31(10)	1167-1174	
ZDB-PUB-011011-3	11582742	Xue, L.Y. and Qian, K.X.	Cloning and sequence analysis of 5' fragment of Hoxa-11 gene in Latimeria chalumnae	Yi Chuan Xue Bao	2001	28(9)	832-839	
ZDB-PUB-041008-7	15468917	Teng, P., Cao, Y., Wang, W.X., Zhu, S.X., Meng, A.M., and Zhang, J.P.	The shh promoter of zebrafish directs the expression of GFP in notochord	Yi Chuan Xue Bao	2004	31(1)	39-42	
ZDB-PUB-060315-20	16529297	Feng, H., Cheng, J., Luo, J., Liu, S.J., and Liu, Y.	Cloning of black carp beta-actin gene and primarily detecting the function of its promoter region	Yi Chuan Xue Bao	2006	33(2)	133-140	
ZDB-PUB-961014-1173	4460778	van Raamsdonk, W., VanderStelt, A., Diegenbach, P.C., VanderBerg, W., DeBruyn, H., van-Dijk, J., and Mijzen, P.	Differentiation of the musculature of the teleost Brachydanio rerio. I. Myotome shape and movements in the embryo	Z. Anat. Entwickl. Gesch.	1974	145(3)	321-342	
ZDB-PUB-961014-1230		Wellens, H.	Comparison of the sensitivity of Brachydanio rerio and Leuciscus idus in the study of the toxicity to fish of chemical compounds and wastewaters	Z. Wasser Abwasser Forsch.	1982	15	49-52	
ZDB-PUB-100210-1	\ 	ZF-MODELS Consortium	ZF-MODELS Consortium Mutagenesis Screen, Freiburg branch	ZFIN Direct Data Submission	2010	\ 	\ 	
ZDB-PUB-100216-1	none	Johnson, S.	Transgenic Line Submissions	ZFIN Direct Data Submission	2010	\ 	\ 	
ZDB-PUB-961014-815	none	Nagel, R.	Untersuchungen zur eiproduktion beim zebrabarbling (Brachydanio rerio, Ham. Buch.) (Egg Production and spawning cycle of zebrafish Brachydanio rerio)	Zeitschrift Angew. Ichthyol. (J. Appl. Ichtyol.)	1986	2	173-181	
ZDB-PUB-961014-534	none	Kasumyan, A.O. and Ponomarev, V.Y.	Biochemical peculiarities of alarm pheromone in Cyprinoid fishes (Cypriniformes)	Zh. Evol. Biokhim. Fisziol.	1987	(Translation expected in J. Evol. Biochem. Physiol. 23)	26-31	
ZDB-PUB-000322-2	none	Burggren, W.W.	Developmental physiology, animal models, and the August Krogh principle	Zool. Anal. Complex Syst.	2000	102(2-3)	148-156	
ZDB-PUB-990427-11		Brand, M.	Genetic analysis of early development of a vertebrate nervous system in the zebrafish, Danio rerio	Zool. Anal. Complex Syst.	1998	101(4)	345-364	
ZDB-PUB-961014-912		Rahmann, H. and Korfsmeier, K.H.	Autoradiographische Untersuchungen uber den Eiweisstransport in Zentralnervensystem von Brachydanio rerio Ham. Buch	Zool. Jb. Abt. Allg. Zool. Physiol.	1965	71	475-488	
ZDB-PUB-961014-475	none	Ilg, L.	Uber larvale Haftorgane bei Teleostreern	Zool. Yb. (Anat.)	1952	72	577-600	
ZDB-PUB-961014-428		Hebig, W.	Weitere bemerkungen zu neubeschreibungen von fischen in der zeitschrift 'Aquarien Terrarien' (Pisces, Osteichthyes). (Further remarks on descriptions of fish taxa osteichthyes pisces new for science in the journal Aquarien-Terrarien.)	Zoologische Abh. St. Mus. Tierk. Dresden	1982	38	293-302	
ZDB-PUB-050621-4	none	Hill, A., Howard, V., Müller, F. and Cossins, A.	Effect of 2,3,7,8-tetrachlorodibenzo-p dioxin on early development and the neurogenesis pathway in the zebrafish (Danio rerio)	Organohalogen Compounds	2001	53	207-210	
ZDB-PUB-961014-157	none	Cairns, J., Scheier, A., and Loos, J.J.	A comparison of the sensitivity to certain chemicals of adult zebra danios, Brachydanio rerio (Hamilton-Buchanan) and zebra danio eggs with that of adult bluegill sunfish, Lepomis macrochinus	Acad. Nat. Sci. Philadelphia, Notulae. Nature	1965	381	1-9	
ZDB-PUB-961014-1146	8279233	van Asselt, E., de Graaf, F., and van Raamsdonk, W.	Ultrastructural characteristics of zebrafish spinal motoneurons innervating glycolytic white, and oxidative red and intermediate muscle fibers	Acta Histochem.	1993	95	31-44	
ZDB-PUB-961014-1167	8739299	van-Raamsdonk, W., Smit-Onel, M.J., and Diegenbach, P.C.	Quantitative enzyme- and immunohistochemistry of hexokinase and cytochrome c oxidase of spinal neurons in the zebrafish	Acta Histochem.	1996	98	143-155	
ZDB-PUB-961014-1172	8030381	van-Raamsdonk, W., vandenBogert, C., Smit-Onel, M.J., Muijsers, A.O., and Diegenbach, P.C.	Combined quantitative immuno- and enzyme cytochemistry of cytochrome c oxidase in sections of neural tissue and cultured cells	Acta Histochem.	1994	96	19-32	
ZDB-PUB-980514-1	9587624	van Raamsdonk, W., Maslam, S., De Jong, D.H., Smit-Onel, M.J., and Velzing, E.	Long term effects of spinal cord transection in zebrafish: swimming performances, and metabolic properties of the neuromuscular system	Acta Histochem.	1998	100	117-131	
ZDB-PUB-980514-2	9587625	van Raamsdonk, W., Smit-Onel, M.J., Maslam, S., Velzing, E., and De Heus, R.	Changes in the synaptology of spinal motoneurons in zebrafish following spinal cord transection	Acta Histochem.	1998	100	133-148	
ZDB-PUB-961014-1165	8135085	van Raamsdonk, W., Smit-Onel, M.J., and Diegenbach, P.C.	Metabolic profiles of white and red intermediate spinal motoneurons in the zebrafish	Acta Histochem.	1993	95	129-138	
ZDB-PUB-961014-1168	3037838	van-Raamsdonk, W., Smit-Onel, M., Donselaar, Y., and Diegenbach, P.	Quantitative cytochemical analysis of cytochrome oxidase and succinate dehydrogenase activity in spinal neurons	Acta Histochem.	1987	81	129-141	
ZDB-PUB-961014-1170	6452016	van-Raamsdonk, W., teKronnie, G., Pool, C.W., and van-de-Laarse, W.	An immune histochemical and enzymatic characterization of the muscle fibers in myotomal muscle of the teleost Brachydanio rerio, Hamilton Buchanan	Acta Histochem.	1980	67	200-216	
ZDB-PUB-020514-5	11993853	Korfsmeier, K.H.	PCNA in the ovary of zebrafish (Brachydanio rerio, Ham.-Buch.)	Acta Histochem.	2002	104(1)	73-76	
ZDB-PUB-961014-802	6410655	Mos, W., Maslam, S., Van-Raamsdonk, W., Kilarski, W., and DeJager, S.	Acetylcholinesterase and acetylcholine receptor histochemistry on end plate regions, myotendinous junctions, and sarcolemma in the axial musculature of three teleost fish species	Acta Histochem.	1983	72	39-53	
ZDB-PUB-961014-318	none	Frank, S.	A contribution to the knowledge of the pharyngeal filter of some species of fishes of the suborder Characinoidei and Cyprinoidei	Acta Soc. Zool. Bohemoslov.	1965	29	146-155	
ZDB-PUB-050513-2	15880261	Kuang, Y.M., Li, W.S., and Lin, H.R.	Molecular Cloning and mRNA Profile of Insulin-like Growth Factor Type 1 Receptor in Orange-spotted Grouper, Epinephelus coioides	Acta. Biochim. Biophys. Sin (Shanghai)	2005	37(5)	327-334	
ZDB-PUB-080616-6	18535746	Lv, W., Zhang, Y., Wu, Z., Chu, L., Koide, S.S., Chen, Y., Yan, Y., and Li, Y.	Identification of WSB1 gene as an important regulator in the development of zebrafish embryo during midblastula transition	Acta. Biochim. Biophys. Sin (Shanghai)	2008	40(6)	478-488	
ZDB-PUB-090807-21	19657569	Sun, C., Xu, M., Xing, Z., Wu, Z., Li, Y., Li, T., and Zhao, M.	Expression and function on embryonic development of lissencephaly-1 genes in zebrafish	Acta. Biochim. Biophys. Sin (Shanghai)	2009	41(8)	677-688	
ZDB-PUB-070513-25	17492136	Tang, R., Dodd, A., Lai, D., McNabb, W.C., and Love, D.R.	Validation of Zebrafish (Danio rerio) Reference Genes for Quantitative Real-time RT-PCR Normalization	Acta. Biochim. Biophys. Sin (Shanghai)	2007	39(5)	384-390	
ZDB-PUB-090112-15	19129954	Sun, S., Gui, Y., Wang, Y., Qian, L., Liu, X., Jiang, Q., and Song, H.	Effects of methotrexate on the developments of heart and vessel in zebrafish	Acta. Biochim. Biophys. Sin (Shanghai)	2009	41(1)	86-96	
ZDB-PUB-070330-33	17376146	Tsai, S.B., Tucci, V., Uchiyama, J., Fabian, N.J., Lin, M.C., Bayliss, P.E., Neuberg, D.S., Zhdanova, I.V., and Kishi, S.	Differential effects of genotoxic stress on both concurrent body growth and gradual senescence in the adult zebrafish	Aging Cell	2007	6(2)	209-224	
ZDB-PUB-080728-13	18652595	Gerlai, R., Ahmad, F., and Prajapati, S.	Differences in Acute Alcohol-Induced Behavioral Responses Among Zebrafish Populations	Alcoholism Clin. Exp. Res.	2008	32(10)	1763-1773	
ZDB-PUB-090204-30	19183139	Fernandes, Y., and Gerlai, R.	Long-Term Behavioral Changes in Response to Early Developmental Exposure to Ethanol in Zebrafish	Alcoholism Clin. Exp. Res.	2009	33(4)	601-609	
ZDB-PUB-970102-8	7765427	Singer, V.L., Paragas, V.B., Larison, K.D., Wells, K.S., Fox, C.J., and Haugland, R.P.	Fluorescence-based signal amplification technology	Am. Biotechnol. Lab.	1994	12(11)	55-6	
ZDB-PUB-010522-6	11376436	Lohr, J.L. and Yost, J.	Vertebrate model systems in the study of early heart development: Xenopus and zebrafish	Am. J. Med. Genet.	2000	97(4)	248-257	
ZDB-PUB-010725-1	11471153	Bisgrove, B.W. and Yost, H.J.	Classification of left-right patterning defects in zebrafish, mice, and humans	Am. J. Med. Genet.	2001	101(4)	315-323	
ZDB-PUB-060302-12	16489111	Milan, D.J., Jones, I.L., Ellinor, P.T., and MacRae, C.A.	In Vivo Recording of the Adult Zebrafish Electrocardiogram and Assessment of Drug Induced QT Prolongation	Am. J. Physiol. Heart Circ. Physiol.	2006	291(1)	269-273	
ZDB-PUB-010918-6	11557562	Warren, K.S., Baker, K., and Fishman, M.C.	The slow mo mutation reduces pacemaker current and heart rate in adult zebrafish	Am. J. Physiol. Heart Circ. Physiol.	2001	281(4)	H1711-H1719	
ZDB-PUB-030117-8	12456393	Sedmera, D., Reckova, M., DeAlmeida, A., Sedmerova, M., Biermann, M., Volejnik, J., Sarre, A., Raddatz, E., McCarthy, R.A., Gourdie, R.G., and Thompson, R.P.	Functional and morphological evidence for a ventricular conduction system in the zebrafish and Xenopus hearts	Am. J. Physiol. Heart Circ. Physiol.	2003	284(4)	H1152-H1160	
ZDB-PUB-040109-15	14704230	Christie, T.L., Mui, R., White, T.W., and Valdimarsson, G.	Molecular cloning, functional analysis, and rna expression analysis of connexin45.6: a zebrafish cardiovascular connexin	Am. J. Physiol. Heart Circ. Physiol.	2004	286(5)	H1623-1632	
ZDB-PUB-961014-827	none	Newton, J.C., Blevins, W.T., Wilt, G.R., and Wolfe, L.G.	Outer membrane protein profile of Edwardsiella-ictaluri from fish	Am. J. Vet. Res.	1990	51	211-215	
ZDB-PUB-041015-1	none	Mojsov, S.	Glucagon-like Peptide-1 (GLP-1) and the Control of Glucose Metabolism in Mammals and Teleost Fish	Am. Zool.	2000	40(2)	246-258	
ZDB-PUB-010814-1	none	Málaga-Trillo, E. and Meyer, A.	Genome duplications and accelerated evolution of Hox genes and cluster architecture in teleost fishes	Am. Zool.	2001	41(3)	676-686	
ZDB-PUB-961014-697	none	Lewis, W.H.	Superficial gel layers of cells and eggs and their role in development	Anales. Inst. Biol. Univ. Nacional (Mexico)	1949	20	441-454	
ZDB-PUB-000201-27	10645962	Daly, F.J. and Sandell, J.H.	Inherited retinal degeneration and apoptosis in mutant zebrafish	Anat. Rec.	2000	258(2)	145-155	
ZDB-PUB-001026-2	10993952	Hu, N., Sedmera, D., Yost, H.J., and Clark, E.B.	Structure and function of the developing zebrafish heart	Anat. Rec.	2000	260(2)	148-157	
ZDB-PUB-010912-30	11505366	Hu, N., Yost, H.J., and Clark, E.B.	Cardiac morphology and blood pressure in the adult zebrafish	Anat. Rec.	2001	264(1)	1-12	
ZDB-PUB-070310-13	17345574	Dezfuli, B.S., Capuano, S., Simoni, E., Previati, M., and Giari, L.	Rodlet cells and the sensory systems in zebrafish (Danio rerio)	Anat. Rec.	2007	290(4)	367-374	
ZDB-PUB-080327-17	18361450	Mobley, A.S., Lucero, M.T., and Michel, W.C.	Cross-Species Comparison of Metabolite Profiles in Chemosensory Epithelia: An Indication of Metabolite Roles in Chemosensory Cells	Anat. Rec.	2008	291(4)	410-432	
ZDB-PUB-080408-15	18383276	Arnold, W.H., Naumova, K.I., Naumova, E.A., and Gaengler, P.	Comparative qualitative and quantitative assessment of biomineralization of tooth development in man and zebrafish (Danio rerio)	Anat. Rec.	2008	291(5)	571-576	
ZDB-PUB-090428-1	18286615	Vasquez, S.X., Hansen, M.S., Bahadur, A.N., Hockin, M.F., Kindlmann, G.L., Nevell, L., Wu, I.Q., Grunwald, D.J., Weinstein, D.M., Jones, G.M., Johnson, C.R., Vandeberg, J.L., Capecchi, M.R., and Keller, C.	Optimization of volumetric computed tomography for skeletal analysis of model genetic organisms	Anat. Rec.	2008	291(5)	475-487	
ZDB-PUB-001026-1	10993948	Rongish, B.J. and Kinsey, W.H.	Transient nuclear localization of Fyn kinase during development in zebrafish	Anat. Rec.	2000	260(2)	115-123	
ZDB-PUB-061221-3	13521360	Hisaoka, K.K., and Hopper, A.F.	Some effects of barbituric and diethylbarbituric acid on the development of the zebra fish, Brachydanio rerio	Anat. Rec.	1957	129(3)	297-307	
ZDB-PUB-081217-2	19051268	Lowery, L.A., De Rienzo, G., Gutzman, J.H., and Sive, H.	Characterization and Classification of Zebrafish Brain Morphology Mutants	Anat. Rec.	2009	292(1)	94-106	
ZDB-PUB-961014-26	none	Aleström, P., Husebye, H., Kavumpurath, S., and Kisen, G.	Zebrafish, a vertebrate model for transgene expression and biological function	Anim. Biotech.	1995	5	147-154	
ZDB-PUB-050422-1	15835399	Lee, E., Chang, B.S., Mun, G.H., Chung, Y.H., Kim, J., and Shin, D.H.	An ultramicroscopic study on the distribution of Muller cell processes in the outer retinal layers of the zebrafish	Ann. Anat.	2005	187(1)	43-50	
ZDB-PUB-030716-3	12851300	Schiöth, H.B., Lagerström, M.C., Watanobe, H., Jonsson, L., Vergoni, A.V., Ringholm, A., Skarphedinsson, J.O., Skuladottir, G.V., Klovins, J., and Fredriksson, R.	Functional role, structure, and evolution of the melanocortin-4 receptor	Ann. N.Y. Acad. Sci.	2003	994	74-83	
ZDB-PUB-050518-11	15891094	Sundström, G., Larsson, T.A., Brenner, S., Venkatesh, B., and Larhammar, D.	Ray-Fin Fish Tetraploidization Gave Rise to Pufferfish Duplicates of NPY and PYY, but Zebrafish NPY Duplicate Was Lost	Ann. N.Y. Acad. Sci.	2005	1040	476-478	
ZDB-PUB-050518-5	15891031	Bjarnadóttir, T.K., Schiöth, H.B., and Fredriksson, R.	The phylogenetic relationship of the glutamate and pheromone g-protein-coupled receptors in different vertebrate species	Ann. N.Y. Acad. Sci.	2005	1040	230-233	
ZDB-PUB-050518-8	15891063	Klovins, J., and Schiöth, H.B.	Agouti-Related Proteins (AGRPs) and Agouti-Signaling Peptide (ASIP) in Fish and Chicken	Ann. N.Y. Acad. Sci.	2005	1040	363-367	
ZDB-PUB-090819-15	19686150	Friedrich, R.W., Yaksi, E., Judkewitz, B., and Wiechert, M.T.	Processing of odor representations by neuronal circuits in the olfactory bulb	Ann. N.Y. Acad. Sci.	2009	1170	293-297	
ZDB-PUB-990224-10	9929621	Byrd, C.A. and Brunjes, P.C.	Addition of new cells to the olfactory bulb of adult zebrafish	Ann. N.Y. Acad. Sci.	1998	855	274-276	
ZDB-PUB-010516-1	11083105	Carvan III, M.J., Dalton, T.P., Stuart, G.W., and Nebert, D.W.	Transgenic zebrafish as sentinels for aquatic pollution	Ann. N.Y. Acad. Sci.	2000	919	133-147	
ZDB-PUB-040713-9	15247079	Kishi, S.	Functional Aging and Gradual Senescence in Zebrafish	Ann. N.Y. Acad. Sci.	2004	1019	521-526	
ZDB-PUB-050518-12	15891097	Tostivint, H., Joly, L., Lihrmann, I., Conlon, J.M., Ekker, M., and Vaudry, H.	Linkage mapping of the [pro2]somatostatin-14 gene in zebrafish: evolutionary perspectives	Ann. N.Y. Acad. Sci.	2005	1040	486-489	
ZDB-PUB-050518-6	15891034	Bromée, T., Conlon, J.M., and Larhammar, D.	Bradykinin Receptors in the Zebrafish (Danio rerio)	Ann. N.Y. Acad. Sci.	2005	1040	246-248	
ZDB-PUB-050518-9	15891066	Larsson, T.A., Olsson, F., Sundström, G., Brenner, S., Venkatesh, B., and Larhammar, D.	Pufferfish and Zebrafish Have Five Distinct NPY Receptor Subtypes, but Have Lost Appetite Receptors Y1 and Y5	Ann. N.Y. Acad. Sci.	2005	1040	375-377	
ZDB-PUB-060816-2	16888233	Wu, S., Adams, B.A., Fradinger, E.A., and Sherwood, N.M.	Role of Two Genes Encoding PACAP in Early Brain Development in Zebrafish	Ann. N.Y. Acad. Sci.	2006	1070	602-621	
ZDB-PUB-990218-4	9927995	Wei, Y., Martin, S.C., Heinrich, G., and Mojsov, S.	Cloning and functional characterization of PACAP-specific receptors in zebrafish	Ann. N.Y. Acad. Sci.	1998	865	45-48	
ZDB-PUB-030716-4	12851332	Logan, D.W., Bryson-Richardson, R.J., Taylor, M.S., Currie, P., and Jackson, I.J.	Sequence characterization of teleost fish melanocortin receptors	Ann. N.Y. Acad. Sci.	2003	994	319-330	
ZDB-PUB-050518-10	15891072	Mathieu, M., Trombino, S., Argenton, F., Larhammar, D., and Vallarino, M.	Developmental Expression of NPY/PYY Receptors zYb and zYc in Zebrafish	Ann. N.Y. Acad. Sci.	2005	1040	399-401	
ZDB-PUB-050518-4	15891003	Khalap, A., Bagrosky, B., Lecaude, S., Youson, J., Danielson, P., and Dores, R.M.	Trends in the evolution of the proenkephalin and prodynorphin genes in gnathostomes	Ann. N.Y. Acad. Sci.	2005	1040	22-37	
ZDB-PUB-050518-7	15891052	Gloriam, D.E., Bjarnadóttir, T.K., Schiöth, H.B., and Fredriksson, R.	High Species Variation within the Repertoire of Trace Amine Receptors	Ann. N.Y. Acad. Sci.	2005	1040	323-327	
ZDB-PUB-060210-22	15891088	Salaneck, E., Larson, E.T., Larsson, T.A., and Larhammar, D.	Effects of a teleost tetraploidization on neuropeptide y receptor gene repertoire in ray-finned fishes	Ann. N.Y. Acad. Sci.	2005	1040	457-459	
ZDB-PUB-090511-4	19416157	Yegorov, S., Good-Avila, S.V., Parry, L., and Wilson, B.C.	Relaxin family genes in humans and teleosts	Ann. N.Y. Acad. Sci.	2009	1160	42-44	
ZDB-PUB-091016-3	19456396	Ocampo Daza, D., Sundström, G., Larsson, T.A., and Larhammar, D.	Evolution of the growth hormone-prolactin-somatolactin system in relation to vertebrate tetraploidizations	Ann. N.Y. Acad. Sci.	2009	1163	491-493	
ZDB-PUB-021203-1	none	Byers, K.B. and Matthews, J.L.	Use of zebrafish and zoonoses	Appl. Biosaf.	2002	7(3)	117-119	
ZDB-PUB-961014-892		Preusker, G.	Der zebrabarbling Brachydanio rerio (Brillant Langflossenform)	Aqua. Terra. Z.	1982	35	291-292	
ZDB-PUB-961014-1199	none	Vogt, D.	Danio (Brachydanio) Nigrofasciatus, ein gesuchter	Aqua. Terra. Z.	1981	34	128	
ZDB-PUB-961014-1256		Wickerling, K.	Die Brachydanio-Arten - nur fur anfanger?	Aqua. Terra. Z.	1982	35	406-409	
ZDB-PUB-961014-286		Elias, J.	Brachydanio frankei	Aqua. Terra. Z.	1982	35	60-63	
ZDB-PUB-961014-882	none	Pinter, H.	Brachydanio-arten	Aqua. Terra. Z.	1958	11	289-291	
ZDB-PUB-010822-5	none	Rawson, D.W., Zhang, T., Kalicharan, D., and Jongebloed, W.J.	Field emission scanning electron microscopy and transmission electron microscopy studies of the chorion, plasma membrane and syncytial layers of the gastrula-stage embryo of the zebrafish Brachydanio rerio: a consideration of the structural and	Aquacult. Res.	2000	31(3)	325-337	
ZDB-PUB-010718-18	none	Meinelt, T., Playle, R., Schreckenbach, K., and Pietrock, M.	The toxicity of the antiparasitic mixture FMC is changed by humic substances and calcium	Aquacult. Res.	2001	32(5)	405-410	
ZDB-PUB-961014-485	none	Jaeger, F.	Eine xanthoristische farbvariante des zebrabarblings, Brachydanio rerio	Aquar. Aqua Terra	1983	17	636-638	
ZDB-PUB-961014-669	none	Lahoda, V.	Der bewimpelte Zebrabarbling	Aquarien Mag.	1983	1983	263-265	
ZDB-PUB-961014-995		Schmidt.H..	Speciesbastard-zwischen Brachydanio rerio und Brachydanio albolineatus	Aquarium	1930	4	50-61	
ZDB-PUB-010417-9	10686337	Samson, J.C. and Shenker, J.	The teratogenic effects of methylmercury on early development of the zebrafish, Danio rerio	Aquat. Toxicol.	2000	48(2)	343-354	
ZDB-PUB-021106-2	12200087	Best, J.H., Pflugmacher, S., Wiegand, C., Eddy, F.B., Metcalf, J.S., and Codd, G.A.	Effects of enteric bacterial and cyanobacterial lipopolysaccharides, and of microcystin-LR, on glutathione S-transferase activities in zebra fish (Danio rerio)	Aquat. Toxicol.	2002	60(3-4)	223-231	
ZDB-PUB-030527-8	12758006	Hill, R.L. and Janz, D.M.	Developmental estrogenic exposure in zebrafish (Danio rerio): I. Effects on sex ratio and breeding success	Aquat. Toxicol.	2003	63(4)	417-429	
ZDB-PUB-030728-14	12878415	Roex, E.W., Keijzers, R., and van Gestel, C.A.	Acetylcholinesterase inhibition and increased food consumption rate in the zebrafish, Danio rerio, after chronic exposure to parathion	Aquat. Toxicol.	2003	64(4)	451-460	
ZDB-PUB-030825-1	12932697	van der Ven, L.T.M., Holbech, H., Fenske, M., van den Brandhof, E.J., Gielis-Proper, F.K., and Wester, P.W.	Vitellogenin expression in zebrafish Danio rerio: evaluation by histochemistry, immunohistochemistry, and in situ mRNA hybridisation	Aquat. Toxicol.	2003	65(1)	1-11	
ZDB-PUB-031022-2	14568354	Orn, S., Holbech, H., Madsen, T.H., Norrgren, L., and Petersen, G.I.	Gonad development and vitellogenin production in zebrafish (Danio rerio) exposed to ethinylestradiol and methyltestosterone	Aquat. Toxicol.	2003	65(4)	397-411	
ZDB-PUB-040429-5	15110466	Diekmann, M., Hultsch, V., and Nagel, R.	On the relevance of genotoxicity for fish populations I: effects of a model genotoxicant on zebrafish (Danio rerio) in a complete life-cycle test	Aquat. Toxicol.	2004	68(1)	13-26	
ZDB-PUB-040526-4	15159048	Brion, F., Tyler, C.R., Palazzi, X., Laillet, B., Porcher, J.M., Garric, J., and Flammarion, P.	Impacts of 17beta-estradiol, including environmentally relevant concentrations, on reproduction after exposure during embryo-larval-, juvenile- and adult-life stages in zebrafish (Danio rerio)	Aquat. Toxicol.	2004	68(3)	193-217	
ZDB-PUB-050825-6	16112210	Kuster, E.	Cholin- and carboxylesterase activities in developing zebrafish embryos (Danio rerio) and their potential use for insecticide hazard assessment	Aquat. Toxicol.	2005	75(1)	76-85	
ZDB-PUB-060227-1	16478635	Paris-Palacios, S., and Biagianti-Risbourg, S.	Hepatocyte nuclear structure and subcellular distribution of copper in zebrafish Brachydanio rerio and roach Rutilus rutilus (Teleostei, Cyprinidae) exposed to copper sulphate	Aquat. Toxicol.	2006	77(3)	306-313	
ZDB-PUB-060616-48	16765461	Hoffmann, J.L., and Oris, J.T.	Altered gene expression: A mechanism for reproductive toxicity in zebrafish exposed to benzo[a]pyrene	Aquat. Toxicol.	2006	78(4)	332-340	
ZDB-PUB-060724-13	16844240	Cooper, C.A., Handy, R.D., and Bury, N.R.	The effects of dietary iron concentration on gastrointestinal and branchial assimilation of both iron and cadmium in zebrafish (Danio rerio)	Aquat. Toxicol.	2006	79(2)	167-175	
ZDB-PUB-060724-24	16854477	Burnison, B.K., Meinelt, T., Playle, R., Pietrock, M., Wienke, A., and Steinberg, C.E.	Cadmium accumulation in zebrafish (Danio rerio) eggs is modulated by dissolved organic matter (DOM)	Aquat. Toxicol.	2006	79(2)	185-191	
ZDB-PUB-070711-27	17606305	Martyniuk, C.J., Gerrie, E.R., Popesku, J.T., Ekker, M., and Trudeau, V.L.	Microarray analysis in the zebrafish (Danio rerio) liver and telencephalon after exposure to low concentration of 17alpha-ethinylestradiol	Aquat. Toxicol.	2007	84(1)	38-49	
ZDB-PUB-070806-23	17662478	Notch, E.G., Miniutti, D.M., and Mayer, G.D.	17alpha-Ethinylestradiol decreases expression of multiple hepatic nucleotide excision repair genes in zebrafish (Danio rerio)	Aquat. Toxicol.	2007	84(3)	301-309	
ZDB-PUB-070813-22	17686537	Leaver, M.J., Wright, J., Hodgson, P., Boukouvala, E., and George, S.G.	Piscine UDP-glucuronosyltransferase 1B	Aquat. Toxicol.	2007	84(3)	356-365	
ZDB-PUB-070827-22	17714802	Johnson, A., Carew, E., and Sloman, K.A.	The effects of copper on the morphological and functional development of zebrafish embryos	Aquat. Toxicol.	2007	84(4)	431-438	
ZDB-PUB-080306-34	18308405	Paull, G.C., Van Look, K.J., Santos, E.M., Filby, A.L., Gray, D.M., Nash, J.P., and Tyler, C.R.	Variability in measures of reproductive success in laboratory-kept colonies of zebrafish and implications for studies addressing population-level effects of environmental chemicals	Aquat. Toxicol.	2008	87(2)	115-126	
ZDB-PUB-080326-14	18339436	Hoffmann, J.L., Thomason, R.G., Lee, D.M., Brill, J.L., Price, B.B., Carr, G.J.,  and Versteeg, D.J.	Hepatic gene expression profiling using GeneChips in zebrafish exposed to 17alpha-methyldihydrotestosterone	Aquat. Toxicol.	2008	87(2)	69-80	
ZDB-PUB-080506-10	18455246	Li, G., Xie, P., Fu, J., Hao, L., Xiong, Q., and Li, H.	Microcystin-induced variations in transcription of GSTs in an omnivorous freshwater fish, goldfish	Aquat. Toxicol.	2008	88(1)	75-80	
ZDB-PUB-080506-7	18453010	Xu, H., Yang, J., Wang, Y., Jiang, Q., Chen, H., and Song, H.	Exposure to 17alpha-ethynylestradiol impairs reproductive functions of both male and female zebrafish (Danio rerio)	Aquat. Toxicol.	2008	88(1)	1-8	
ZDB-PUB-080922-19	18801584	Bourrachot, S., Simon, O., and Gilbin, R.	The effects of waterborne uranium on the hatching success, development, and survival of early life stages of zebrafish (Danio rerio)	Aquat. Toxicol.	2008	90(1)	29-36	
ZDB-PUB-081001-17	18823668	Tilton, F., La Du, J.K., and Tanguay, R.L.	Sulfhydryl systems are a critical factor in the zebrafish developmental toxicity of the dithiocarbamate sodium metam (NaM)	Aquat. Toxicol.	2008	90(2)	121-127	
ZDB-PUB-081031-6	18963085	Holth, T.F., Nourizadeh-Lillabadi, R., Blaesbjerg, M., Grung, M., Holbech, H., Petersen, G.I., Aleström, P., and Hylland, K.	Differential gene expression and biomarkers in zebrafish (Danio rerio) following exposure to produced water components	Aquat. Toxicol.	2008	90(4)	277-291	
ZDB-PUB-081121-24	19019466	Wan, G., Cheuk, W.K., and Chan, K.M.	Differential regulation of zebrafish metallothionein-II (zMT-II) gene transcription in ZFL and SJD cell lines by metal ions	Aquat. Toxicol.	2009	91(1)	33-43	
ZDB-PUB-090123-15	19157579	Colman, J.R., Baldwin, D., Johnson, L.L., and Scholz, N.L.	Effects of the synthetic estrogen, 17alpha-ethinylestradiol, on aggression and courtship behavior in male zebrafish (Danio rerio)	Aquat. Toxicol.	2009	91(4)	346-354	
ZDB-PUB-090424-29	19386370	Fushimi, S., Wada, N., Nohno, T., Tomita, M., Saijoh, K., Sunami, S., and Katsuyama, H.	17beta-Estradiol inhibits chondrogenesis in the skull development of zebrafish embryos	Aquat. Toxicol.	2009	95(4)	292-298	
ZDB-PUB-090505-7	19403181	Bugiak, B., and Weber, L.P.	Hepatic and vascular mRNA expression in adult zebrafish (Danio rerio) following exposure to benzo-a-pyrene and 2,3,7,8-tetrachlorodibenzo-p-dioxin	Aquat. Toxicol.	2009	95(4)	299-306	
ZDB-PUB-090921-5	19747739	Soares, J., Coimbra, A.M., Reis-Henriques, M.A., Monteiro, N.M., Vieira, M.N., Oliveira, J.M., Guedes-Dias, P., Fontaínhas-Fernandes, A., Parra, S.S., Carvalho, A.P., Castro, L.F., and Santos, M.M.	Disruption of zebrafish (Danio rerio) embryonic development after full life-cycle parental exposure to low levels of ethinylestradiol	Aquat. Toxicol.	2009	95(4)	330-338	
ZDB-PUB-961014-1041		Slooff, W., Canton, J.H., and Hermens, J.L.H.	Comparison of the susceptibility of 22 freshwater species to 15 chemical compounds. I. Subacute toxicity tests	Aquat. Toxicol.	1983	4	113-128	
ZDB-PUB-961014-1154		VanLeeuwen, C.J., Adema, D.M.M., and Hermens, J.	Quantitative structure-activity relationships for fish early life stage toxicity	Aquat. Toxicol.	1990	16	321-334	
ZDB-PUB-961014-1197	none	Vittozzi, L. and DeAngelis, G.	A critical review of comparative acute toxicity data on freshwater fish	Aquat. Toxicol.	1991	19	167-204	
ZDB-PUB-091120-14	19883947	Khan, F.R., Bury, N.R., and Hogstrand, C.	Cadmium bound to metal rich granules and exoskeleton from Gammarus pulex causes increased gut lipid peroxidation in zebrafish following single dietary exposure	Aquat. Toxicol.	2010	96(2)	124-129	
ZDB-PUB-100105-34	20042243	Belanger, S.E., Balon, E.K., and Rawlings, J.M.	Saltatory ontogeny of fishes and sensitive early life stages for ecotoxicology tests	Aquat. Toxicol.	2010	97(2)	88-95	
ZDB-PUB-100302-21	20189255	Behrendt, L., Jönsson, M.E., Goldstone, J.V., and Stegeman, J.J.	Induction of cytochrome P450 1 genes and stress response genes in developing zebrafish exposed to ultraviolet radiation	Aquat. Toxicol.	2010	\ 	\ 	
ZDB-PUB-010718-47	11163431	Cheng, S.H., Chan, P.K., and Wu, R.S.S.	The use of microangiography in detecting aberrant vasculature in zebrafish embryos exposed to cadmium	Aquat. Toxicol.	2001	52(1)	61-71	
ZDB-PUB-010807-31	11451430	Willey, J.B. and Krone, P.H.	Effects of endosulfan and nonylphenol on the primordial germ cell population in pre-larval zebrafish embryos	Aquat. Toxicol.	2001	54(1-2)	113-123	
ZDB-PUB-010814-9	11489307	Meinelt, T., Playle, R.C., Pietrock, M., Burnison, B.K., Wienke, A., and Steinberg, C.E.	Interaction of cadmium toxicity in embryos and larvae of zebrafish (Danio rerio) with calcium and humic substances	Aquat. Toxicol.	2001	54(3-4)	205-215	
ZDB-PUB-040326-11	15036873	Van Den Belt, K., Berckmans, P., Vangenechten, C., Verheyen, R., and Witters, H.	Comparative study on the in vitro/in vivo estrogenic potencies of 17beta-estradiol, estrone, 17alpha-ethynylestradiol and nonylphenol	Aquat. Toxicol.	2004	66(2)	183-195	
ZDB-PUB-040329-3	15036871	Lefebvre, K.A., Trainer, V.L., and Scholz, N.L.	Morphological abnormalities and sensorimotor deficits in larval fish exposed to dissolved saxitoxin	Aquat. Toxicol.	2004	66(2)	159-170	
ZDB-PUB-040625-9	15210295	Kazeto, Y., Place, A.R., and Trant, J.M.	Effects of endocrine disrupting chemicals on the expression of CYP19 genes in zebrafish (Danio rerio) juveniles	Aquat. Toxicol.	2004	69(1)	25-34	
ZDB-PUB-060724-14	16844241	Linderoth, M., Ledesma, M., Zebuhr, Y., and Balk, L.	Sex steroids in the female zebrafish (Danio rerio) Effects of cyproterone acetate and leachate-contaminated sediment extract	Aquat. Toxicol.	2006	79(2)	192-200	
ZDB-PUB-060825-11	16919340	Kuiper, R.V., Murk, A.J., Leonards, P.E., Grinwis, G.C., van den Berg, M., and Vos, J.G.	In vivo and in vitro Ah-receptor activation by commercial and fractionated pentabromodiphenylether using zebrafish (Danio rerio) and the DR-CALUX assay	Aquat. Toxicol.	2006	79(4)	366-375	
ZDB-PUB-060921-3	16963132	Miranda, C.L., Chung, W.G., Wang-Buhler, J.L., Musafia-Jeknic, T., Baird, W.M., and Buhler, D.R.	Comparative in vitro metabolism of benzo[a]pyrene by recombinant zebrafish CYP1A and liver microsomes from beta-naphthoflavone-treated rainbow trout	Aquat. Toxicol.	2006	80(2)	101-108	
ZDB-PUB-070409-23	17412433	Lema, S.C., Schultz, I.R., Scholz, N.L., Incardona, J.P., and Swanson, P.	Neural defects and cardiac arrhythmia in fish larvae following embryonic exposure to 2,2',4,4'-tetrabromodiphenyl ether (PBDE 47)	Aquat. Toxicol.	2007	82(4)	296-307	
ZDB-PUB-070427-14	17433458	Alsop, D., Brown, S., and Van Der Kraak, G.	The effects of copper and benzo[a]pyrene on retinoids and reproduction in zebrafish	Aquat. Toxicol.	2007	82(4)	281-295	
ZDB-PUB-071108-5	17964672	Timme-Laragy, A.R., Cockman, C.J., Matson, C.W, and Di Giulio, R.T.	Synergistic induction of AHR regulated genes in developmental toxicity from co-exposure to two model PAHs in zebrafish	Aquat. Toxicol.	2007	85(4)	241-250	
ZDB-PUB-071210-4	18045703	Voelker, D., Stetefeld, N., Schirmer, K., and Scholz, S.	The role of cyp1a and heme oxygenase 1 gene expression for the toxicity of 3,4-dichloroaniline in zebrafish (Danio rerio) embryos	Aquat. Toxicol.	2008	86(1)	112-120	
ZDB-PUB-080218-17	18207254	Christianson-Heiska, I.L., Haavisto, T., Paranko, J., Bergelin, E., and Isomaa, B.	Effects of the wood extractives dehydroabietic acid and betulinol on reproductive physiology of zebrafish (Danio rerio)-A two-generation study	Aquat. Toxicol.	2008	86(3)	388-396	
ZDB-PUB-080519-3	18479765	Carls, M.G., Holland, L., Larsen, M., Collier, T.K., Scholz, N.L., and Incardona, J.P.	Fish embryos are damaged by dissolved PAHs, not oil particles	Aquat. Toxicol.	2008	88(2)	121-127	
ZDB-PUB-080722-14	18632167	Liu, T.A., Bhuiyan, S., Snow, R., Yasuda, S., Yasuda, T., Yang, Y.S., Williams, F.E., Liu, M.Y., Suiko, M., Carter, G., and Liu, M.C.	Identification and characterization of two novel cytosolic sulfotransferases, SULT1 ST7 and SULT1 ST8, from zebrafish	Aquat. Toxicol.	2008	89(2)	94-102	
ZDB-PUB-081029-17	18950874	Béchard, K.M., Gillis, P.L., and Wood, C.M.	Trophic transfer of Cd from larval chironomids (Chironomus riparius) exposed via sediment or waterborne routes, to zebrafish (Danio rerio): Tissue-specific and subcellular comparisons	Aquat. Toxicol.	2008	90(4)	310-321	
ZDB-PUB-081105-12	18977541	Martinovic, D., Villeneuve, D.L., Kahl, M.D., Blake, L.S., Brodin, J.D., and Ankley, G.T.	Hypoxia alters gene expression in the gonads of zebrafish (Danio rerio)	Aquat. Toxicol.	2009	95(4)	258-272	
ZDB-PUB-090106-30	19110324	Li, D., Lu, C., Wang, J., Hu, W., Cao, Z., Sun, D., Xia, H., and Ma, X.	Developmental mechanisms of arsenite toxicity in zebrafish (Danio rerio) embryos	Aquat. Toxicol.	2009	91(3)	229-237	
ZDB-PUB-090227-8	19223081	Jin, Y., Chen, R., Sun, L., Liu, W., and Fu, Z.	Photoperiod and temperature influence endocrine disruptive chemical-mediated effects in male adult zebrafish	Aquat. Toxicol.	2009	92(1)	38-43	
ZDB-PUB-090302-19	19237207	Notch, E.G., and Mayer, G.D.	17alpha-Ethinylestradiol hinders nucleotide excision repair in zebrafish liver cells	Aquat. Toxicol.	2009	95(4)	273-278	
ZDB-PUB-091120-15	19883949	Stanley, K.A., Curtis, L.R., Massey Simonich, S.L., and Tanguay, R.L.	Endosulfan I and endosulfan sulfate disrupts zebrafish embryonic development	Aquat. Toxicol.	2009	95(4)	355-361	
ZDB-PUB-091120-69	19923012	Zhou, S., Dong, Q., Li, S., Guo, J., Wang, X., and Zhu, G.	Developmental toxicity of cartap on zebrafish embryos	Aquat. Toxicol.	2009	95(4)	339-346	
ZDB-PUB-091215-17	19945756	Yu, L., Deng, J., Shi, X., Liu, C., Yu, K., and Zhou, B.	Exposure to DE-71 alters thyroid hormone levels and gene transcription in the hypothalamic-pituitary-thyroid axis of zebrafish larvae	Aquat. Toxicol.	2009	\ 	\ 	
ZDB-PUB-100112-26	20060176	Choi, J.E., Kim, S., Ahn, J.H., Youn, P., Kang, J.S., Park, K., Yi, J., and Ryu, D.Y.	Induction of oxidative stress and apoptosis by silver nanoparticles in the liver of adult zebrafish	Aquat. Toxicol.	2009	\ 	\ 	
ZDB-PUB-010417-2	11090896	Samson, J.C., Goodridge, R., Olobatuyi, F., and Weis, J.S.	Delayed effects of embryonic exposure of zebrafish (Danio rerio) to methylmercury (MeHg)	Aquat. Toxicol.	2001	51(4)	369-376	
ZDB-PUB-010822-2	none	Wicklund Glynn, A., Norrgren, L., and Müssener, Å.	Differences in uptake of inorganic mercury and cadmium in the gills of the zebrafish, Brachydanio rerio	Aquat. Toxicol.	1994	30(1)	13-26	
ZDB-PUB-030115-23	12505378	Islinger, M., Willimski, D., Volkl, A., and Braunbeck, T.	Effects of 17a-ethinylestradiol on the expression of three estrogen-responsive genes and cellular ultrastructure of liver and testes in male zebrafish	Aquat. Toxicol.	2003	62(2)	85-103	
ZDB-PUB-030307-6	12615422	Chan, P.K. and Cheng, S.H.	Fractal analysis of vascular complexity in cadmium-treated zebrafish embryos	Aquat. Toxicol.	2003	63(1)	83-87	
ZDB-PUB-030514-1	12711416	Cao, Z., Tanguay, R.L., McKenzie, D., Peterson, R.E., and Aiken, J.M.	Identification of a putative calcium-binding protein as a dioxin-responsive gene in zebrafish and rainbow trout	Aquat. Toxicol.	2003	63(3)	271-282	
ZDB-PUB-030527-7	12758007	Weber, L.P., Hill, R.L., and Janz, D.M.	Developmental estrogenic exposure in zebrafish (Danio rerio): II. Histological evaluation of gametogenesis and organ toxicity	Aquat. Toxicol.	2003	63(4)	431-446	
ZDB-PUB-030924-1	13678849	McAllister, B.G. and Kime, D.E.	Early life exposure to environmental levels of the aromatase inhibitor tributyltin causes masculinisation and irreversible sperm damage in zebrafish (Danio rerio)	Aquat. Toxicol.	2003	65(3)	309-316	
ZDB-PUB-040109-32	14687977	Zodrow, J.M., Stegeman, J.J., and Tanguay, R.L.	Histological analysis of acute toxicity of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in zebrafish	Aquat. Toxicol.	2004	66(1)	25-38	
ZDB-PUB-040429-4	15110467	Diekmann, M., Waldmann, P,, Schnurstein, A., Grummt, T., Braunbeck, T., and Nagel, R.	On the relevance of genotoxicity for fish populations II: genotoxic effects in zebrafish (Danio rerio) exposed to 4-nitroquinoline-1-oxide in a complete life-cycle test	Aquat. Toxicol.	2004	68(1)	27-37	
ZDB-PUB-040803-4	15276328	Chen, W.Y., John, J.A., Lin, C.H., Lin, H.F., Wu, S.C., Lin, C.H., and Chang, C.Y.	Expression of metallothionein gene during embryonic and early larval development in zebrafish	Aquat. Toxicol.	2004	69(3)	215-227	
ZDB-PUB-041104-8	15522429	Chung, W.G., Sen, A., Wang-Buhler, J.L., Yang, Y.H., Lopez, N., Merrill, G.F., Miranda, C.L., Hu, C.H., and Buhler, D.R.	cDNA-directed expression of a functional zebrafish CYP1A in yeast	Aquat. Toxicol.	2004	70(2)	111-121	
ZDB-PUB-051219-2	16352352	Andersen, L., Goto-Kazeto, R., Trant, J.M., Nash, J.P., Korsgaard, B., and Bjerregaard, P.	Short-term exposure to low concentrations of the synthetic androgen methyltestosterone affects vitellogenin and steroid levels in adult male zebrafish (Danio rerio)	Aquat. Toxicol.	2006	76(3-4)	343-352	
ZDB-PUB-060412-2	16580747	Teraoka, H., Dong, W., Okuhara, Y., Iwasa, H., Shindo, A., Hill, A.J., Kawakami, A., and Hiraga, T.	Impairment of lower jaw growth in developing zebrafish exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin and reduced hedgehog expression	Aquat. Toxicol.	2006	78(2)	103-113	
ZDB-PUB-060731-18	16872691	Hoffmann, J.L., Torontali, S.P., Thomason, R.G., Lee, D.M., Brill, J.L., Price, B.B., Carr, G.J., Versteeg, D.J.	Hepatic gene expression profiling using Genechips in zebrafish exposed to 17alpha-ethynylestradiol	Aquat. Toxicol.	2006	79(3)	233-246	
ZDB-PUB-061205-7	17113166	Lin, L.L., and Janz, D.M.	Effects of binary mixtures of xenoestrogens on gonadal development and reproduction in zebrafish	Aquat. Toxicol.	2006	80(4)	382-395	
ZDB-PUB-070303-3	17292976	Voelker, D., Vess, C., Tillmann, M., Nagel, R., Otto, G.W., Geisler, R., Schirmer, K., and Scholz, S.	Differential gene expression as a toxicant-sensitive endpoint in zebrafish embryos and larvae	Aquat. Toxicol.	2007	81(4)	355-364	
ZDB-PUB-070513-7	17475347	Santos, E.M., Paull, G.C., Van Look, K.J., Workman, V.L., Holt, W.V., van Aerle, R., Kille, P., and Tyler, C.R.	Gonadal transcriptome responses and physiological consequences of exposure to oestrogen in breeding zebrafish (Danio rerio)	Aquat. Toxicol.	2007	83(2)	134-142	
ZDB-PUB-080306-4	18281107	Osterauer, R., and Köhler, H.R.	Temperature-dependent effects of the pesticides thiacloprid and diazinon on the embryonic development of zebrafish (Danio rerio)	Aquat. Toxicol.	2008	86(4)	485-494	
ZDB-PUB-080326-21	18342959	Chow, E.S., Hui, M.N., Lin, C.C., and Cheng, S.H.	Cadmium inhibits neurogenesis in zebrafish embryonic brain development	Aquat. Toxicol.	2008	87(3)	157-169	
ZDB-PUB-080327-16	18359522	Larsen, M.G., Hansen, K.B., Henriksen, P.G., and Baatrup, E.	Male zebrafish (Danio rerio) courtship behaviour resists the feminising effects of 17alpha-ethinyloestradiol-morphological sexual characteristics do not	Aquat. Toxicol.	2008	87(4)	234-244	
ZDB-PUB-080408-11	18378331	Matson, C.W., Clark, B.W., Jenny, M.J., Fleming, C.R., Hahn, M.E., and Di Giulio, R.T.	Development of the morpholino gene knockdown technique in Fundulus heteroclitus: A tool for studying molecular mechanisms in an established environmental model	Aquat. Toxicol.	2008	87(4)	289-295	
ZDB-PUB-080527-20	18499281	Jin, Y., Wang, W., Xu, C., Fu, Z., and Liu, W.	Induction of hepatic estrogen-responsive gene transcription by permethrin enantiomers in male adult zebrafish	Aquat. Toxicol.	2008	88(2)	146-152	
ZDB-PUB-080722-26	18639347	Cheuk, W.K., Chan, P.C., and Chan, K.M.	Cytotoxicities and induction of metallothionein (MT) and metal regulatory element (MRE)-binding transcription factor-1 (MTF-1) messenger RNA levels in the zebrafish (Danio rerio) ZFL and SJD cell lines after exposure to various metal ions	Aquat. Toxicol.	2008	89(2)	103-112	
ZDB-PUB-080902-31	18760846	Liu, Y., Wang, J., Wei, Y., Zhang, H., Xu, M., and Dai, J.	Induction of time-dependent oxidative stress and related transcriptional effects of perfluorododecanoic acid in zebrafish liver	Aquat. Toxicol.	2008	89(4)	242-250	
ZDB-PUB-081008-2	18829120	Schirmer, K., Tanneberger, K., Kramer, N.I., Völker, D., Scholz, S., Hafner, C., Lee, L.E., Bols, N.C., and Hermens, J.L.	Developing a list of reference chemicals for testing alternatives to whole fish toxicity tests	Aquat. Toxicol.	2008	90(2)	128-137	
ZDB-PUB-081217-7	19056132	Jönsson, M.E., Brunström, B., and Brandt, I.	The zebrafish gill model: Induction of CYP1A, EROD and PAH adduct formation	Aquat. Toxicol.	2009	91(1)	62-70	
ZDB-PUB-090324-1	19297033	Purdie, E.L., Samsudin, S., Eddy, F.B., and Codd, G.A.	Effects of the cyanobacterial neurotoxin beta-N-methylamino-L-alanine on the early-life stage development of zebrafish (Danio rerio)	Aquat. Toxicol.	2009	95(4)	279-284	
ZDB-PUB-090406-4	19328561	Sandrini, J.Z., Bianchini, A., Trindade, G.S., Nery, L.E., and Marins, L.F.	Reactive oxygen species generation and expression of DNA repair-related genes after copper exposure in zebrafish (Danio rerio) ZFL cells	Aquat. Toxicol.	2009	95(4)	285-291	
ZDB-PUB-090413-8	19356805	Deng, J., Yu, L., Liu, C., Yu, K., Shi, X., Yeung, L.W., Lam, P.K., Wu, R.S., and Zhou, B.	Hexabromocyclododecane-induced developmental toxicity and apoptosis in zebrafish embryos	Aquat. Toxicol.	2009	93(1)	29-36	
ZDB-PUB-090518-23	19443055	Liu, C., Yu, L., Deng, J., Lam, P.K., Wu, R.S., and Zhou, B.	Waterborne exposure to fluorotelomer alcohol 6:2 FTOH alters plasma sex hormone and gene transcription in the hypothalamic-pituitary-gonadal (HPG) axis of zebrafish	Aquat. Toxicol.	2009	93(2-3)	131-137	
ZDB-PUB-090616-19	19493577	Lister, A., Regan, C., Van Zwol, J., and Van Der Kraak, G.	Inhibition of egg production in zebrafish by fluoxetine and municipal effluents: A mechanistic evaluation	Aquat. Toxicol.	2009	95(4)	320-329	
ZDB-PUB-961014-542	none	Keizer, J., D'Agostino, G., and Vittozzi, L.	The importance of biotransformation in the toxicity of xenobiotics to fish. I. Toxicity and bioaccumulation of diazinon in guppy Poecilia reticulata and zebra fish Brachydanio rerio	Aquat. Toxicol.	1991	21	239-254	
ZDB-PUB-091101-4	19850364	Chen, H., Hu, J., Yang, J., Wang, Y., Xu, H., Jiang, Q., Gong, Y., Gu, Y., and Song, H.	Generation of a fluorescent transgenic zebrafish for detection of environmental estrogens	Aquat. Toxicol.	2010	96(1)	53-61	
ZDB-PUB-091120-5	19879662	Liu, C., Deng, J., Yu, L., Ramesh, M., and Zhou, B.	Endocrine disruption and reproductive impairment in zebrafish by exposure to 8:2 fluorotelomer alcohol	Aquat. Toxicol.	2010	96(1)	70-76	
ZDB-PUB-091120-7	19880199	Jin, M., Zhang, X., Wang, L., Huang, C., Zhang, Y., and Zhao, M.	Developmental toxicity of bifenthrin in embryo-larval stages of zebrafish	Aquat. Toxicol.	2009	95(4)	347-354	
ZDB-PUB-100223-54	20171748	Huang, H., Huang, C., Wang, L., Ye, X., Bai, C., Simonich, M.T., Tanguay, R.L., and Dong, Q.	Toxicity, uptake kinetics and behavior assessment in zebrafish embryos following exposure to perfluorooctanesulphonicacid (PFOS)	Aquat. Toxicol.	2010	\ 	\ 	
ZDB-PUB-010213-1	11163597	Wautier, K., van der Heyden, C., and Huysseune, A.	A quantitative analysis of pharyngeal tooth shape in the zebrafish (Danio rerio, Teleostei, Cyprinidae)	Arch. Oral Biol.	2001	46(1)	67-75	
ZDB-PUB-010905-1	11543712	van der Heyden, C., Wautier, K., and Huysseune, A.	Tooth succession in the zebrafish (Danio rerio)	Arch. Oral Biol.	2001	46(11)	1051-1058	
ZDB-PUB-041206-2	15576635	Pini, B., Grosser, T., Lawson, J.A., Price, T.S., Pack, M.A., and Fitzgerald, G.A.	Prostaglandin E Synthases in Zebrafish	Arterioscler. Thromb. Vasc. Biol.	2005	25(2)	315-320	
ZDB-PUB-090629-15	19542019	Mariappan, D., Niemann, R., Gajewski, M., Winkler, J., Chen, S., Choorapoikayil, S., Bitzer, M., Schulz, H., Hescheler, J., and Sachinidis, A.	Somitovasculin, a Novel Endothelial-Specific Transcript Involved in the Vasculature Development	Arterioscler. Thromb. Vasc. Biol.	2009	29(11)	1823-1829	
ZDB-PUB-070806-19	17656667	Gray, C., Packham, I.M., Wurmser, F., Eastley, N.C., Hellewell, P.G., Ingham, P.W., Crossman, D.C., and Chico, T.J.	Ischemia Is Not Required for Arteriogenesis in Zebrafish Embryos	Arterioscler. Thromb. Vasc. Biol.	2007	27(10)	2135-2141	
ZDB-PUB-090204-9	19164804	Stone, O.A., Richer, C., Emanueli, C., van Weel, V., Quax, P.H., Katare, R., Kraenkel, N., Campagnolo, P., Barcelos, L.S., Siragusa, M., Sala-Newby, G.B., Baldessari, D., Mione, M., Vincent, M.P., Benest, A.V., Al Haj Zen, A., Gonzalez, J., Bates, D.O., Alhenc-Gelas, F., and Madeddu, P.	Critical Role of Tissue Kallikrein in Vessel Formation and Maturation. Implications for Therapeutic Revascularization	Arterioscler. Thromb. Vasc. Biol.	2009	29(5)	657-664	
ZDB-PUB-040421-6	15090155	Parng, C., Seng, W.L., Semino, C., and McGrath, P.	Zebrafish: a preclinical model for drug screening	Assay Drug Dev. Technol.	2002			
ZDB-PUB-961014-334		Gandolfi, G.	Varriabilita individuale nella reazione di paura degli Ostariofisi	Ball. Zool.	1968	35	354-355	
ZDB-PUB-081022-18	18848866	Gumm, J.M., Snekser, J.L., and Iovine, M.K.	Fin-mutant female zebrafish (Danio rerio) exhibit differences in association preferences for male fin length	Behav. Processes	2009	80(1)	35-38	
ZDB-PUB-020730-11	12044689	Williams, F.E., White, D., and Messer Jr., W.S.	A simple spatial alternation task for assessing memory function in zebrafish	Behav. Processes	2002	58(3)	125-132	
ZDB-PUB-030106-4	none	Heuts, B.A.	Lateralization of trunk muscle volume, and lateralization of swimming turns of fish responding to external stimuli	Behav. Processes	1999	47(2)	113-124	
ZDB-PUB-050623-7	15967284	Colwill, R.M., Raymond, M.P., Ferreira, L., and Escudero, H.	Visual discrimination learning in zebrafish (Danio rerio)	Behav. Processes	2005	70(1)	19-31	
ZDB-PUB-000623-13	10833454	Matsumoto, M., Saito, T., Takasaki, J., Kamohara, M., Sugimoto, T., Kobayashi, M., Tadokoro, M., Matsumoto, S.-I., Ohishi, T., and Furuichi, K.	An evolutionarily conserved G-protein coupled receptor family, SREB, expressed in the central nervous system	Biochemical and Biophysical Research Communications	2000	272(2)	576-582	
ZDB-PUB-010424-3	11401485	Hsu, H.J., Wang, W.D., and Hu, C.-H.	Ectopic expression of negative ARNT2 factor disrupts fish development	Biochemical and Biophysical Research Communications	2001	282(2)	487-492	
ZDB-PUB-010807-1	11437379	Chen, J.-Y., Chang, B.-E., Chen, Y.-H., Lin, C.J.F., Wu, J.-L., and Kuo, C.-M.	Molecular cloning, developmental expression, and hormonal regulation of zebrafish (Danio rerio) b crystallin B1, a member of the superfamily of b crystallin proteins	Biochemical and Biophysical Research Communications	2001	285(1)	105-110	
ZDB-PUB-010912-28	11511083	Chambers, S.P., Dodd, A., Overall, R., Sirey, T., Lam, L.T., Morris, G.E., and Love, D.R.	Dystrophin in adult zebrafish muscle	Biochemical and Biophysical Research Communications	2001	286(3)	478-483	
ZDB-PUB-010918-8	11554744	Awenius, C., Hankeln, T., and Burmester, T.	Neuroglobins from the zebrafish Danio rerio and the pufferfish Tetraodon nigroviridis	Biochemical and Biophysical Research Communications	2001	287(2)	418-421	
ZDB-PUB-020220-9	11846397	Kawamura, A., Yamada, K., Fujimori, K., and Higashinakagawa, T.	Alternative transcripts of a polyhomeotic gene homolog are expressed in distinct regions of somites during segmentation of zebrafish embryos	Biochemical and Biophysical Research Communications	2002	291(2)	245-254	
ZDB-PUB-020306-3	11866436	Chen, W.-Y., John, A.C.J., Lin, C.-H., and Chang, C.-Y.	Molecular cloning and developmental expression of zinc finger transcription factor MTF-1 gene in zebrafish, Danio rerio	Biochemical and Biophysical Research Communications	2002	291(4)	798-805	
ZDB-PUB-020618-8	12051733	Kawamura, A., Yokota, S., Yamada, K., Inoue, H., Inohaya, K., Yamazaki, K., Yasumasu, I., and Higashinakagawa, T.	pc1 and psc1, zebrafish homologs of Drosophila Polycomb and Posterior sex combs, encode nuclear proteins capable of complex interactions.	Biochemical and Biophysical Research Communications	2002	294(2)	456-463	
ZDB-PUB-020912-12	12207891	Ton, C., Stamatiou, D., Dzau, V., and Liew, C.	Construction of a zebrafish cDNA microarray: gene expression profiling of the zebrafish during development	Biochemical and Biophysical Research Communications	2002	296(5)	1134-1142	
ZDB-PUB-030115-19	12507510	Sugahara, T., Liu, C.-C., Govind Pai, T., and Liu, M.-C.	Molecular cloning, expression, and functional characterization of a novel zebrafish cytosolic sulfotransferase	Biochemical and Biophysical Research Communications	2003	300(3)	725-730	
ZDB-PUB-030425-2	12684052	Hansen, I.A., To, T.T., Wortmann, S., Burmester, T., Winkler, C., Meyer, S.R., Neurner, C., Fassnacht, and Allolio, B.	The pro-opiomelanocortin gene of the zebrafish (Danio rerio)	Biochemical and Biophysical Research Communications	2003	303(4)	1121-1128	
ZDB-PUB-030527-5	12763013	Choi, D.-K., Yoo, K.-W., Hong, S.-K., Rhee, M., Sakaki, Y., and Kim, C.-H.	Isolation and expression of Napor/CUG-BP2 in embryo development	Biochemical and Biophysical Research Communications	2003	305(3)	448-454	
ZDB-PUB-030602-10	12711302	Teraoka, H., Dong, W., Tsujimoto, Y., Iwasa, H., Endoh, D., Ueno, N., Stegeman, J.J., Peterson, R.E., and Hiraga, T.	Induction of cytochrome P450 1A is required for circulation failure and edema by 2,3,7,8-tetrachlorodibenzo-p-dioxin in zebrafish	Biochemical and Biophysical Research Communications	2003	304(2)	223-228	
ZDB-PUB-030715-7	12804607	Yamakoshi, K. and Shimoda, N.	PCR-based cloning of an intronless zebrafish no tail gene	Biochemical and Biophysical Research Communications	2003	306(2)	598-602	
ZDB-PUB-030805-5	12890479	Gong, Z., Wan, H., Tay, T.-L., Wang, H., Chen, M., and Yan, T.	Development of transgenic fish for ornamental and bioreactor by strong expression of fluorescent proteins in the skeletal muscle	Biochemical and Biophysical Research Communications	2003	308(1)	58-63	
ZDB-PUB-040109-14	14706655	Kurita, R., Tabata, Y., Sagara, H., Arai, K., and Watanabe, S.	A novel smoothelin-like, actin-binding protein required for choroidal fissure closure in zebrafish	Biochemical and Biophysical Research Communications	2004	313(4)	1092-1100	
ZDB-PUB-040205-9	10049693	Morgan, M.J. and Madgwick, A.J.	The LIM proteins FHL1 and FHL3 are expressed differently in skeletal muscle	Biochemical and Biophysical Research Communications	1999	255(2)	245-250	
ZDB-PUB-040914-3	15358204	Chang, M.H., Huang, C.J., Hwang, S.P., Lu, I.C., Lin, C.M., Kuo, T.F., and Chou, C.M.	Zebrafish heparin-binding neurotrophic factor enhances neurite outgrowth during its development	Biochemical and Biophysical Research Communications	2004	321(2)	502-509	
ZDB-PUB-041217-1	12061794	Suzuki, T., Kurokawa, T., Hashimoto, H., and Sugiyama, M.	cDNA sequence and tissue expression of Fugu rubripes prion protein-like: a candidate for the teleost orthologue of tetrapod PrPs	Biochemical and Biophysical Research Communications	2002	294(4)	912-917	
ZDB-PUB-050303-1	15737632	Lv, D., Song, P., Chen, Y., Gong, W., and Mo, S.	Cloning and characterization of full length of a novel zebrafish gene Zsrg abundantly expressed in the germline stem cells	Biochemical and Biophysical Research Communications	2005	329(2)	632-637	
ZDB-PUB-050623-2	15963466	Nakamoto, M., Suzuki, A., Matsuda, M., Nagahama, Y., and Shibata, N.	Testicular type Sox9 is not involved in sex determination but might be in the development of testicular structures in the medaka, Oryzias latipes	Biochemical and Biophysical Research Communications	2005	333(3)	729-736	
ZDB-PUB-051128-12	16307728	Lopes, C., Delezoide, A.L., Delabar, J.M., and Rachidi, M.	BARHL1 homeogene, the human ortholog of the mouse Barhl1 involved in cerebellum development, shows regional and cellular specificities in restricted domains of developing human central nervous system	Biochemical and Biophysical Research Communications	2006	339(1)	296-304	
ZDB-PUB-060216-5	16472769	Zhao, C., He, X., Tian, C., and Meng, A.	Two GC-rich boxes in huC promoter play distinct roles in controlling its neuronal specific expression in zebrafish embryos	Biochemical and Biophysical Research Communications	2006	342(1)	214-220	
ZDB-PUB-060517-27	16696945	Sun, Z., Jin, P., Tian, T., Gu, Y., Chen, Y.G., and Meng, A.	Activation and roles of ALK4/ALK7-mediated maternal TGFbeta signals in zebrafish embryo	Biochemical and Biophysical Research Communications	2006	345(2)	694-703	
ZDB-PUB-061116-9	17097613	Abe, T., Ishikawa, T., Masuda, T., Mizusawa, K., Tsukamoto, T., Mitani, H., Yanagisawa, T., Todo, T., and Iigo, M.	Molecular analysis of Dec1 and Dec2 in the peripheral circadian clock of zebrafish photosensitive cells	Biochemical and Biophysical Research Communications	2006	351(4)	1072-1077	
ZDB-PUB-070504-21	17466267	Song, M., Yang, H., Yao, S., Ma, F., Li, Z., Deng, Y., Deng, H., Zhou, Q., Shuo, L., and Wei, Y.	A critical role of vascular endothelial growth factor D in zebrafish embryonic vasculogenesis and angiogenesis	Biochemical and Biophysical Research Communications	2007	357(4)	924-930	
ZDB-PUB-071001-12	17897628	Kimura, M., Taniguchi, M., Mikami, Y., Masuda, T., Yoshida, T., Mishina, M., and Shimizu, T.	Identification and characterization of zebrafish semaphorin 6D	Biochemical and Biophysical Research Communications	2007	363(3)	762-768	
ZDB-PUB-080102-9	18164260	Moriarty, M.A., Martin, E.D., Byrnes, L., and Grealy, M.	Molecular cloning and developmental expression of plakophilin 2 in zebrafish	Biochemical and Biophysical Research Communications	2008	367(1)	124-129	
ZDB-PUB-080428-1	15381070	Grundt, K., Haga, I.V., Aleporou-Marinou, V., Drosos, Y., Wanvik, B., and Østvold, A.C.	Characterisation of the NUCKS gene on human chromosome 1q32.1 and the presence of a homologous gene in different species	Biochemical and Biophysical Research Communications	2004	323(3)	796-801	
ZDB-PUB-090302-6	19232322	Scholz, E.P., Niemer, N., Hassel, D., Zitron, E., Bürgers, H.F., Bloehs, R., Seyler, C., Scherer, D., Thomas, D., Kathöfer, S., Katus, H.A., Rottbauer, W.A., and Karle, C.A.	Biophysical properties of zebrafish ether-à-go-go related gene potassium channels	Biochemical and Biophysical Research Communications	2009	381(2)	159-164	
ZDB-PUB-090407-8	19338760	Zheng, P.P., Severijnen, L.A., Willemsen, R., and Kros, J.M.	Haemoglobin staining for in vivo portraying of functional vasculature in experimental zebrafish embryos	Biochemical and Biophysical Research Communications	2009	380(4)	823-824	
ZDB-PUB-090417-3	19364469	Jang, G.H., Park, I.S., Lee, S.H., Huh, T.L., and Lee, Y.M.	Malachite green induces cardiovascular defects in developing zebrafish (Danio rerio) embryos by blocking VEGFR-2 signaling	Biochemical and Biophysical Research Communications	2009	382(3)	486-491	
ZDB-PUB-090429-7	19393221	Jiang, Q., Liu, D., Gong, Y., Wang, Y., Sun, S., Gui, Y., and Song, H.	yap is required for the development of brain, eyes, and neural crest in zebrafish	Biochemical and Biophysical Research Communications	2009	384(1)	114-119	
ZDB-PUB-090616-60	19523926	Kanungo, J., Zheng, Y.L., Amin, N.D., Kaur, S., Ramchandran, R., and Pant, H.C.	Specific Inhibition of Cyclin-dependent Kinase 5 Activity Induces Motor Neuron Development in vivo	Biochemical and Biophysical Research Communications	2009	386(1)	263-267	
ZDB-PUB-961014-1032	8602850	Shimoda, N., Chevrette, M., Ekker, M., Kikuchi, Y., Hotta, Y., and Okamoto, H.	Mermaid, a family of short interspersed repetitive elements, is useful for zebrafish genome mapping	Biochemical and Biophysical Research Communications	1996	220	233-237	
ZDB-PUB-961014-35	7575578	Amirthalingam, K., Lorens, J.B., Sætre, B.O., Salaneck, E., and Fjose, A.	Embryonic expression and DNA-binding properties of zebrafish pax-6	Biochemical and Biophysical Research Communications	1995	215	122-128	
ZDB-PUB-961014-642	7794255	Kuo, C.H., Uetsuki, T., Kim, C.H., Tanaka, H., Li, B.S., Taira, E., Higuchi, H., Okamoto, H., Yoshikawa, K., and Miki, N.	Determination of a necdin cis-acting element required for neuron specific expression by using zebra fish	Biochemical and Biophysical Research Communications	1995	211(2)	438-446	
ZDB-PUB-961014-675	1930167	Lanfear, J., Jowett, T., and Holland, P.W.H.	Cloning of fish zinc-finger genes related to Krox-20 and Krox-24	Biochemical and Biophysical Research Communications	1991	179	1220-1224	
ZDB-PUB-970903-7	9266834	Chang, H. and Gilbert, W.	A novel zebrafish gene expressed specifically in the photoreceptor cells of the retina	Biochemical and Biophysical Research Communications	1997	237(1)	84-89	
ZDB-PUB-980123-1	9434780	Ringvall, M., Berglund, M.M., and Larhammar, D.	Multiplicity of neruopeptide Y receptors: cloning of a third distinct subtype in the zebrafish	Biochemical and Biophysical Research Communications	1997	241	749-755	
ZDB-PUB-990628-9	10381345	Kurosawa, G., Yamada, K., Ishiguro, H., and Hori, H.	Hox gene complexity in medaka fish may be similar to that in pufferfish rather than zebrafish	Biochemical and Biophysical Research Communications	1999	260(1)	66-70	
ZDB-PUB-091113-2	19857465	Miyake, A., Takahashi, Y., Miwa, H., Shimada, A., Konishi, M., and Itoh, N.	Neucrin is a novel neural-specific secreted antagonist to canonical Wnt signaling	Biochemical and Biophysical Research Communications	2009	390(3)	1051-1055	
ZDB-PUB-100105-9	20026059	Wang, L., Zhou, J.Y., Yao, J.H., Lu, D.R., Qiao, X.J., and Jia, W.	U6 promoter-driven siRNA injection has nonspecific effects in zebrafish	Biochemical and Biophysical Research Communications	2010	391(3)	1363-1368	
ZDB-PUB-001221-12	11112429	Im, D.S., Ungar, A.R., and Lynch, K.R.	Characterization of a zebrafish (Danio rerio) sphingosine 1-phosphate receptor expressed in the embryonic brain	Biochemical and Biophysical Research Communications	2000	279(1)	139-143	
ZDB-PUB-001221-5	11118352	Chen, M.C., Gong, H.Y., Cheng, C.Y., Wang, J.P., Hong, J.R., and Wu, J.L.	Cloning and characterization of a novel nuclear Bcl-2 family protein, zfMcl-1a, in zebrafish embryo	Biochemical and Biophysical Research Communications	2000	279(2)	725-731	
ZDB-PUB-011031-7	11676471	Kazeto, Y., Ijiri, S., Place, A.R., Zohar, Y., and Trant, J.M.	The 5'-flanking regions of CYP19A1 and CYP19A2 in zebrafish	Biochemical and Biophysical Research Communications	2001	288(3)	503-508	
ZDB-PUB-011205-1	11688983	Huang, W.T., Gong, H.Y., Lin, C.J., Weng, C.F., Chen, M.H., and Wu, J.L.	Hepatocyte nuclear factors-1alpha, -1beta, and -3beta expressed in the gonad of tilapia (Oreochromis mossambicus)	Biochemical and Biophysical Research Communications	2001	288(4)	833-840	
ZDB-PUB-020912-20	12127972	Diaz-Hernandez, M., Cox, J.A., Migita, K., Haines, W., Egan, T.M., and Voigt, M.M	Cloning and characterization of two novel zebrafish P2X receptor subunits	Biochemical and Biophysical Research Communications	2002	295(4)	849-853	
ZDB-PUB-030602-6	12727206	Hsieh, Y.C., Chang, M.S., Chen, J.Y., Jong-Young Yen, J., Lu, I.C., Chou, C.M., and Huang, C.-J.	Cloning of zebrafish BAD, a BH3-only proapoptotic protein, whose overexpression leads to apoptosis in COS-1 cells and zebrafish embryos	Biochemical and Biophysical Research Communications	2003	304(4)	667-675	
ZDB-PUB-040819-2	15313188	Mikami, Y., Yoshida, T., Matsuda, N., and Mishina, M.	Expression of zebrafish glutamate receptor delta2 in neurons with cerebellum-like wiring	Biochemical and Biophysical Research Communications	2004	322(1)	168-176	
ZDB-PUB-041116-1	15541366	Satoh, S., Arai, K., and Watanabe, S.	Identification of a novel splicing form of zebrafish p73 having a strong transcriptional activity	Biochemical and Biophysical Research Communications	2004	325(3)	835-842	
ZDB-PUB-050324-1	15781253	Yasuda, S., Liu, C.C., Takahashi, S., Suiko, M., Chen, L., Snow, R., and Liu, M.C.	Identification of a novel estrogen-sulfating cytosolic SULT from zebrafish: Molecular cloning, expression, characterization, and ontogeny study	Biochemical and Biophysical Research Communications	2005	330(1)	219-225	
ZDB-PUB-050404-1	15796924	Wakasugi, K., and Morishima, I.	Preparation and characterization of a chimeric zebrafish-human neuroglobin engineered by module substitution	Biochemical and Biophysical Research Communications	2005	330(2)	591-597	
ZDB-PUB-050413-5	15809088	Guo, Y., Cheng, H., Huang, X., Gao, S., Yu, H., and Zhou, R.	Gene structure, multiple alternative splicing, and expression in gonads of zebrafish Dmrt1	Biochemical and Biophysical Research Communications	2005	330(3)	950-957	
ZDB-PUB-050427-3	15845393	Wang, Y., Zhong, T., Qian, L., Dong, Y., Jiang, Q., Tan, L., and Song, H.	Wortmannin induces zebrafish cardia bifida through a mechanism independent of phosphoinositide 3-kinase and myosin light chain kinase	Biochemical and Biophysical Research Communications	2005	331(1)	303-308	
ZDB-PUB-050513-5	15882979	Godard, C.A., Goldstone, J.V., Said, M.R., Dickerson, R.L., Woodin, B.R., and Stegeman, J.J.	The new vertebrate CYP1C family: Cloning of new subfamily members and phylogenetic analysis	Biochemical and Biophysical Research Communications	2005	331(4)	1016-1024	
ZDB-PUB-050718-8	16018965	Ying, S.Y., and Lin, S.L.	MicroRNA: Fine-tunes the function of genes in zebrafish	Biochemical and Biophysical Research Communications	2005	335(1)	1-4	
ZDB-PUB-050930-10	16188232	Sohn, K.C., and Do, S.I.	Transcriptional regulation and O-GlcNAcylation activity of zebrafish OGT during embryogenesis	Biochemical and Biophysical Research Communications	2005	337(1)	256-263	
ZDB-PUB-060124-5	16403448	Chou, C.M., Chen, Y.C., Lee, M.T., Chen, G.D., Lu, I.C., Chen, S.T., and Huang, C.J.	Expression and characterization of a brain-specific protein kinase BSK146 from zebrafish	Biochemical and Biophysical Research Communications	2006	340(3)	767-775	
ZDB-PUB-060710-6	16815307	Nomura, R., Kamei, E., Hotta, Y., Konishi, M., Miyake, A., and Itoh, N.	Fgf16 is essential for pectoral fin bud formation in zebrafish	Biochemical and Biophysical Research Communications	2006	347(1)	340-346	
ZDB-PUB-060906-26	16950203	Chiou, M.J., Chao, T.T., Wu, J.L., Kuo, C.M., and Chen, J.Y.	The physiological role of CTGF/CCN2 in zebrafish notochond development and biological analysis of the proximal promoter region	Biochemical and Biophysical Research Communications	2006	349(2)	750-758	
ZDB-PUB-061227-32	17157820	Wang, L., Yao, J., Chen, L., Chen, J., Xue, J., and Jia, W.	Expression and possible functional roles of cytochromes P450 2J1 (zfCyp 2J1) in zebrafish	Biochemical and Biophysical Research Communications	2007	352(4)	850-855	
ZDB-PUB-070409-11	17400187	Wang, Z., Zheng, L., Yang, S., Niu, R., Chu, E., and Lin, X.	N-Acetylchitooligosaccharide is a potent angiogenic inhibitor both in vivo and in vitro	Biochemical and Biophysical Research Communications	2007	357(1)	26-31	
ZDB-PUB-070513-24	17490614	O'boyle, S., Bree, R.T., McLoughlin, S., Grealy, M., and Byrnes, L.	Identification of zygotic genes expressed at the midblastula transition in zebrafish	Biochemical and Biophysical Research Communications	2007	358(2)	462-468	
ZDB-PUB-070614-6	17521608	Harada, Y., Yokota, C., Habas, R., Slusarski, D.C., and He, X.	Retinoic acid-inducible G protein-coupled receptors bind to frizzled receptors and may activate non-canonical Wnt signaling	Biochemical and Biophysical Research Communications	2007	358(4)	968-975	
ZDB-PUB-070822-1	16199220	Fuchs, C., Luckhardt, A., Gerlach, F., Burmester, T., and Hankeln, T.	Duplicated cytoglobin genes in teleost fishes	Biochemical and Biophysical Research Communications	2005	337(1)	216-223	
ZDB-PUB-080102-14	18166148	Wang, D., Jiao, B., Hu, C., Huang, X., Liu, Z., and Cheng, C.H.	Discovery of a gonad-specific IGF subtype in teleost	Biochemical and Biophysical Research Communications	2008	367(2)	336-341	
ZDB-PUB-080306-27	18302932	Watanabe, S., and Wakasugi, K.	Neuroprotective function of human neuroglobin is correlated with its guanine nucleotide dissociation inhibitor activity	Biochemical and Biophysical Research Communications	2008	369(2)	695-700	
ZDB-PUB-080506-2	18448074	Ahmed, H., and Vasta, G.R.	Unlike mammalian GRIFIN, the zebrafish homologue (DrGRIFIN) represents a functional carbohydrate-binding galectin	Biochemical and Biophysical Research Communications	2008	371(3)	350-355	
ZDB-PUB-080714-5	18602892	Brette, F., Luxan, G., Cros, C., Dixey, H., Wilson, C., and Shiels, H.A.	Characterization of isolated ventricular myocytes from adult zebrafish (Danio rerio)	Biochemical and Biophysical Research Communications	2008	374(1)	143-146	
ZDB-PUB-080801-2	18656453	Minehata, K.I., Kawahara, A., and Suzuki, T.	meis1 regulates the development of endothelial cells in zebrafish	Biochemical and Biophysical Research Communications	2008	374(4)	647-652	
ZDB-PUB-080902-7	18725198	Weiser, D.C., Julien, K.R., Lang, J.S., and Kimelman, D.	Cell shape regulation by Gravin requires N-terminal membrane effector domains	Biochemical and Biophysical Research Communications	2008	375(4)	512-516	
ZDB-PUB-081218-11	19068208	Raghunath, M., Sy, W.Y., Farooq, M., and Ruowen, G.	Pharmacologically induced angiogenesis in transgenic zebrafish	Biochemical and Biophysical Research Communications	2009	378(4)	766-771	
ZDB-PUB-081218-29	19084503	So, J.H., Chun, H.S., Bae, Y.K., Kim, H.S., Park, Y.M., Huh, T.L., Chitnis, A.B., Kim, C.H., and Yeo, S.Y.	Her4 is necessary for establishing peripheral projections of the trigeminal ganglia in zebrafish	Biochemical and Biophysical Research Communications	2009	379(1)	22-26	
ZDB-PUB-090310-5	19258008	Kim, J.D., Chun, H.S., Kim, S.H., Kim, H.S., Kim, Y.S., Kim, M.J., Shin, J., Rhee, M., Yeo, S.Y., and Huh, T.L.	Normal forebrain development may require continual Wnt antagonism until mid-somitogenesis in zebrafish	Biochemical and Biophysical Research Communications	2009	381(4)	717-721	
ZDB-PUB-090731-9	19635460	Lee, C.Y., Hu, S.Y., Gong, H.Y., Chen, M.H., Lu, J.K., and Wu, J.L.	Suppression of myostatin with vector-based RNA interference causes a double-muscle effect in transgenic zebrafish	Biochemical and Biophysical Research Communications	2009	387(4)	766-771	
ZDB-PUB-961014-263	2892487	Eiken, H.G., Njolstad, P.R., Molven, A., and Fjose, A.	A zebrafish homeobox-containing gene with embryonic transcription	Biochemical and Biophysical Research Communications	1987	149	1165-1171	
ZDB-PUB-961014-834	2904810	Njolstad, P.R. and Fjose, A.	In situ hybridization patterns of zebrafish homeobox genes homologous to Hox-2.1 and En-2 of mouse	Biochemical and Biophysical Research Communications	1988	157	426-432	
ZDB-PUB-980514-3	9571192	Barrallo, A., González Sarmiento, R., Porteros, A., García Isidoro, M., and Rodriguez, R.E.	Cloning, molecular characterization, and distribution of a gene homologous to delta opioid receptor from zebrafish (Danio rerio)	Biochemical and Biophysical Research Communications	1998	245	544-548	
ZDB-PUB-990108-11	9535784	Le Jossic, C. and Michel, D.	Striking evolutionary conservation of a cis-element related to nuclear receptor target sites and present in TR2 orphan receptor genes	Biochemical and Biophysical Research Communications	1998	245	64-69	
ZDB-PUB-991014-1	10486270	Wargelius, A., Ellingsen, S., and Fjose, A.	Double-stranded RNA induces specific developmental defects in zebrafish embryos	Biochemical and Biophysical Research Communications	1999	263(1)	156-161	
ZDB-PUB-991102-18	10529376	Khodaei, S., O'Brien, K.P., Dumanski, J., Wong, F.K., and Weber, G.	Characterization of the MEN1 ortholog in zebrafish	Biochemical and Biophysical Research Communications	1999	264(2)	404-408	
ZDB-PUB-100202-2	20100463	Kulkeaw, K., Ishitani, T., Kanemaru, T., Fucharoen, S., and Sugiyama, D.	Cold exposure down-regulates zebrafish hematopoiesis	Biochemical and Biophysical Research Communications	2010	\ 	\ 	
ZDB-PUB-100211-19	20138842	Tan, S.H., Chung, H.H., and Shu-Chien, A.C.	Distinct developmental expression of 2 elongase family members in zebrafish	Biochemical and Biophysical Research Communications	2010	\ 	\ 	
ZDB-PUB-000616-1	10814508	Hirata, T., Yamanaka, Y., Ryu, S.L., Shimizu, T., Yabe, T., Hibi, M., and Hirano, T.	Novel mix-family homeobox genes in zebrafish and their differential regulation	Biochemical and Biophysical Research Communications	2000	271(3)	603-609	
ZDB-PUB-010912-12	11527411	Dasmahapatra, A.K., Doucet, H.L., Bhattacharyya, C., Carvan III, M.J.	Developmental expression of alcohol dehydrogenase (ADH3) in zebrafish (Danio rerio)	Biochemical and Biophysical Research Communications	2001	286(5)	1082-1086	
ZDB-PUB-010918-7	11554746	Deltour, S., Pinte, S., Guerardel, C., and Leprince, D.	Characterization of hrg22, a human homologue of the putative tumor suppressor gene hic1	Biochemical and Biophysical Research Communications	2001	287(2)	427-434	
ZDB-PUB-030408-16	12659844	Chambers, S.P., Anderson, L.V., Maguire, G.M., Dodd, A., and Love, D.R.	Sarcoglycans of the zebrafish: orthology and localization to the sarcolemma and myosepta of muscle	Biochemical and Biophysical Research Communications	2003	303(2)	488-495	
ZDB-PUB-030728-5	12859970	Pan, H., Dung, H.-N., Hsu, H.-M., Hsiao, K.-M., and Chen, L.-Y.	Cloning and developmental expression of p73 cDNA in zebrafish	Biochemical and Biophysical Research Communications	2003	307(2)	395-400	
ZDB-PUB-030805-4	12890499	Park, S.-H., Yeo, S.-Y., Yoo, K.-W., Hong, S.-K., Lee, S., Rhee, M., Chitnis, A.B., and Kim, C.-H.	Zath3, a neural basic helix-loop-helix gene, regulates early neurogenesis in the zebrafish	Biochemical and Biophysical Research Communications	2003	308(1)	184-190	
ZDB-PUB-030902-14	12943655	Ohkimoto, K., Sugahara, T., Sakakibara, Y., Suiko, M., Liu, M.Y., Carter, G., and Liu, M.C.	Sulfonation of environmental estrogens by zebrafish cytosolic sulfotransferases	Biochemical and Biophysical Research Communications	2003	309(1)	7-11	
ZDB-PUB-030908-12	12951074	Wargelius, A., Seo, H.-C., Austobo, L., and Fjose, A.	Retinal expression of zebrafish six3.1 and its regulation by Pax6	Biochemical and Biophysical Research Communications	2003	309(2)	475-481	
ZDB-PUB-040623-3	15207702	Takagi, Y., Kobayashi, M., Li, L., Suzuki, T., Nishikawa, K, and Yamamoto, M.	MafT, a new member of the small Maf protein family in zebrafish	Biochemical and Biophysical Research Communications	2004	320(1)	62-69	
ZDB-PUB-040908-4	15336959	Palczewski, K., Sokal, I., and Baehr, W.	Guanylate cyclase-activating proteins: structure, function, and diversity	Biochemical and Biophysical Research Communications	2004	322(4)	1123-1130	
ZDB-PUB-041012-4	15474464	Guo, Y., Li, Q., Gao, S., Zhou, X., He, Y., Shang, X., Cheng, H., and Zhou, R.	Molecular cloning, characterization, and expression in brain and gonad of Dmrt5 of zebrafish	Biochemical and Biophysical Research Communications	2004	324(2)	569-575	
ZDB-PUB-050215-4	15707958	Komoike, Y., Kawamura, A., Shindo, N., Sato, C., Satoh, J., Shiurba, R., and Higashinakagawa, T.	Zebrafish Polycomb group gene ph2alpha is required for epiboly and tailbud formation acting downstream of FGF signaling	Biochemical and Biophysical Research Communications	2005	328(4)	858-866	
ZDB-PUB-050225-3	15721310	He, C., and Chen, X.	Transcription regulation of the vegf gene by the BMP/Smad pathway in the angioblast of zebrafish embryos	Biochemical and Biophysical Research Communications	2005	329(1)	324-330	
ZDB-PUB-050513-6	15883028	Choe, S.K., and Sagerström, C.G.	Variable Meis-dependence among paralog group-1 Hox proteins	Biochemical and Biophysical Research Communications	2005	331(4)	1384-1391	
ZDB-PUB-050603-9	15922293	Ro, H., Won, M., Lee, S.U., Kim, K.E., Huh, T.L., Kim, C.H., and Rhee, M.	Sinup, a novel Siaz-interacting nuclear protein, modulates neural plate formation in the zebrafish embryos	Biochemical and Biophysical Research Communications	2005	332(4)	993-1003	
ZDB-PUB-050623-1	15961062	Bree, R.T., McLoughlin, S., Jin, S.W., McMeel, O.M., Stainier, D.Y., Grealy, M., and Byrnes, L.	nanor, a novel zygotic gene, is expressed initially at the midblastula transition in zebrafish	Biochemical and Biophysical Research Communications	2005	333(3)	722-728	
ZDB-PUB-050831-8	16125671	Chen, L., Yao, J.H., Zhang, S.H., Wang, L., Song, H.D., and Xue, J.L.	Slit-like 2, a novel zebrafish slit homologue that might involve in zebrafish central neural and vascular morphogenesis	Biochemical and Biophysical Research Communications	2005	336(1)	364-371	
ZDB-PUB-060124-19	16414019	Miesbauer, M., Bamme, T., Riemer, C., Oidtmann, B., Winklhofer, K.F., Baier, M., and Tatzelt, J.	Prion protein-related proteins from zebrafish are complex glycosylated and contain a glycosylphosphatidylinositol anchor	Biochemical and Biophysical Research Communications	2006	341(1)	218-224	
ZDB-PUB-060124-21	16414346	Corley-Smith, G.E., Su, H.T., Wang-Buhler, J.L., Tseng, H.P., Hu, C.H., Hoang, T., Chung, W.G., and Buhler, D.R.	CYP3C1, the first member of a new cytochrome P450 subfamily found in zebrafish (Danio rerio)	Biochemical and Biophysical Research Communications	2006			
ZDB-PUB-060419-7	16616005	Chen, G.D., Chou, C.M., Hwang, S.P., Wang, F.F., Chen, Y.C., Hung, C.C., Chen, J.Y., and Huang, C.J.	Requirement of nuclear localization and transcriptional activity of p53 for its targeting to the yolk syncytial layer (YSL) nuclei in zebrafish embryo and its use for apoptosis assay	Biochemical and Biophysical Research Communications	2006	344(1)	272-282	
ZDB-PUB-060508-5	16650823	Cheng, L., Guo, X.F., Yang, X.Y., Chong, M., Cheng, J., Li, G., Gui, Y.H., and Lu, D.R.	delta-sarcoglycan is necessary for early heart and muscle development in zebrafish	Biochemical and Biophysical Research Communications	2006	344(4)	1290-1299	
ZDB-PUB-060710-4	16814745	Wang, X., Zheng, L., Zeng, Z., Zhou, G., Chien, J., Qian, C., Vasmatzis, G., Shridhar, V., Chen, L., and Liu, W.	DIXDC1 isoform, l-DIXDC1, is a novel filamentous actin-binding protein	Biochemical and Biophysical Research Communications	2006	347(1)	22-30	
ZDB-PUB-060724-23	16854375	Wang, W.D., Huang, C.J., Lu, Y.F., Hsin, J.P., Prabhakar, V.R., Cheng, C.F., and Hwang, S.P.	Heart-targeted overexpression of Nip3a in zebrafish embryos causes abnormal heart development and cardiac dysfunction	Biochemical and Biophysical Research Communications	2006	347(4)	979-987	
ZDB-PUB-060807-10	16887101	Tetreault, M.L., Henry, D., Horrigan, D.M., Matthews, G., and Zimmerman, A.L.	Characterization of a novel cyclic nucleotide-gated channel from zebrafish brain	Biochemical and Biophysical Research Communications	2006	348(2)	441-449	
ZDB-PUB-061205-4	17112475	Ishikawa, T.O., Griffin, K.J., Banerjee, U., and Herschman, H.R.	The zebrafish genome contains two inducible, functional cyclooxygenase-2 genes	Biochemical and Biophysical Research Communications	2007	352(1)	181-187	
ZDB-PUB-070614-16	17531198	Guo, X., Cheng, L., Liu, Y., Fan, W., and Lu, D.	Cloning, expression, and functional characterization of zebrafish Mist1	Biochemical and Biophysical Research Communications	2007	359(1)	20-26	
ZDB-PUB-070625-24	17560942	Hu, M.C., Gong, H.Y., Lin, G.H., Hu, S.Y., Chen, M.H., Huang, S.J., Liao, C.F., and Wu, J.L.	XBP-1, a key regulator of unfolded protein response, activates transcription of IGF1 and Akt phosphorylation in zebrafish embryonic cell line	Biochemical and Biophysical Research Communications	2007	359(3)	778-783	
ZDB-PUB-070726-32	17643392	Valencia, C.A., Bailey, C., and Liu, R.	Novel zebrafish caspase-3 substrates	Biochemical and Biophysical Research Communications	2007	361(2)	311-316	
ZDB-PUB-081114-14	19000902	Zheng, P.P., Severijnen, L.A., Willemsen, R., and Kros, J.M.	Caldesmon is essential for cardiac morphogenesis and function: In vivo study using a zebrafish model	Biochemical and Biophysical Research Communications	2009	378(1)	37-40	
ZDB-PUB-081217-15	19059211	Sung, J.J., Jeon, J., Lee, J.J., and Kim, C.G.	Zebrafish Jak2a plays a crucial role in definitive hematopoiesis and blood vessel formation	Biochemical and Biophysical Research Communications	2009	378(3)	629-633	
ZDB-PUB-090310-2	19254693	Du, T.T., Fu, Y.F., Dong, M., Wang, L., Fan, H.B., Chen, Y., Jin, Y., Chen, S.J., Chen, Z., Deng, M., Huang, Q.H., and Liu, T.X.	Experimental validation and complexity of miRNA-mRNA target interaction during zebrafish primitive erythropoiesis	Biochemical and Biophysical Research Communications	2009	381(4)	688-693	
ZDB-PUB-090319-5	19284996	Tian, T., Zhao, L., Zhang, M., Zhao, X., and Meng, A.	Both foxj1a and foxj1b are implicated in left-right asymmetric development in zebrafish embryos	Biochemical and Biophysical Research Communications	2009	380(3)	537-542	
ZDB-PUB-961014-639	7980538	Krone, P.H. and Sass, J.B.	hsp 90 alpha and hsp 90 beta genes are present in the zebrafish and are differentially regulated in developing embryos	Biochemical and Biophysical Research Communications	1994	204	746-752	
ZDB-PUB-961014-740	1417821	Matsuzaki, T., Amanuma, H., and Takeda, H.	A POU-domain gene of zebrafish, ZFPOU1, specifically expressed in the developing neural tissues	Biochemical and Biophysical Research Communications	1992	187	1446-1453	
ZDB-PUB-961014-971	8605028	Sampath, K. and Stuart, G.W.	Developmental expression of class III and IV POU domain genes in the zebrafish	Biochemical and Biophysical Research Communications	1996	219	565-571	
ZDB-PUB-971103-5	9299390	Verri, T., F. Argenton, M. Scarpa, C. Storelli, R. Costa, L. Colombo, and M. Bortolussi	The bacteriophage T7 binary system activates transient transgene expression in zebrafish (Danio rerio) embryos	Biochemical and Biophysical Research Communications	1997	237(3)	492-495	
ZDB-PUB-091023-12	19800866	Vogel, B., Meder, B., Just, S., Laufer, C., Berger, I., Weber, S., Katus, H.A., and Rottbauer, W.	In-vivo Characterization of Human Dilated Cardiomyopathy Genes in Zebrafish	Biochemical and Biophysical Research Communications	2009	390(3)	516-522	
ZDB-PUB-091023-48	19833091	Friedrich, M., Nozadze, R., Gan, Q., Zelman-Femiak, M., Ermolayev, V., Wagner, T., and Harms, G.S.	Detection of single quantum dots in model organisms with sheet illumination microscopy	Biochemical and Biophysical Research Communications	2009	390(3)	722-727	
ZDB-PUB-961014-862	7549939	Patil, J.G. and Khoo, H.W.	Ultrastructural in situ hybridization and autoradiographic detection of foreign DNA in zebrafish spermatozoa	Biochem. Mol. Biol. Int.	1995	35	965-969	
ZDB-PUB-041022-3	15494018	Martin, E.D., and Grealy, M.	Plakoglobin expression and localization in zebrafish embryo development.	Biochem. Soc. Trans.	2004		797-798	
ZDB-PUB-081125-1	19021535	Hogstrand, C., Zheng, D., Feeney, G., Cunningham, P., and Kille, P.	Zinc-controlled gene expression by metal-regulatory transcription factor 1 (MTF1) in a model vertebrate, the zebrafish	Biochem. Soc. Trans.	2008	36(6)	1252-1257	
ZDB-PUB-090727-1	19614603	Martin, J.S., and Renshaw, S.A.	Using in vivo zebrafish models to understand the biochemical basis of neutrophilic respiratory disease	Biochem. Soc. Trans.	2009	37(Pt 4)	830-837	
ZDB-PUB-060531-6	16709184	Stringer, S.E.	The role of heparan sulphate proteoglycans in angiogenesis	Biochem. Soc. Trans.	2006	34(3)	451-453	
ZDB-PUB-991014-8	10524261	Stuart, J.A., Harper, J.A., Brindle, K.M., and Brand, M.D.	Uncoupling protein 2 from carp and zebrafish, ectothermic vertebrates	Biochim. Biophys. Acta Bio-Energetics	1999	1413(1)	50-54	
ZDB-PUB-990316-6	10076054	Jin, E.-J., and Thibaudeau, G.	Effects of lithium on pigmentation in the embryonic zebrafish (Brachydanio rerio)	Biochim. Biophys. Acta. Mol. Cell	1999	1449	93-99	
ZDB-PUB-000726-1	10899777	Skauli, K.S., Reitan, J.B., and Walther, B.T.	Hatching in zebrafish (Danio rerio) embryos exposed to a 50 Hz magnetic field	Bioelectromagnetics	2000	21(5)	407-410	
ZDB-PUB-031031-4	14583542	Turnell, E.R., Mann, K.D., Rosenthal, G.G., and Gerlach, G.	Mate choice in zebrafish (Danio rerio) analyzed with video-stimulus techniques	Biol. Bull.	2003	205(2)	225-226	
ZDB-PUB-961014-504		Lewis, W.H.	The superficial gel layer and its role in development	Biol. Bull.	1944	87	154	
ZDB-PUB-961014-950		Roosen-Runge, E.	Karyokinesis during cleavage of the zebrafish, Brachydanio rerio	Biol. Bull.	1939	77	79-91	
ZDB-PUB-961219-23	none	Mizell, M., Romig, E., Stegeman, J., Smolowitz, R., and Katayani-R	Zebrafish embryo monitoring of the aquatic environment: dose-response synergism revealed in combinations of pollutant chemical mixtures	Biol. Bull.	1996	191(2)	292-294	
ZDB-PUB-031031-5	14583541	Mann, K.D., Turnell, E.R., Atema, J., and Gerlach, G.	Kin recognition in juvenile zebrafish (Danio rerio) based on olfactory cues	Biol. Bull.	2003	205(2)	224-225	
ZDB-PUB-961014-1028		Shephard, D.C.	A cytological study of the origin of melanophores in the teleosts	Biol. Bull.	1961	120	206-220	
ZDB-PUB-961014-949		Roosen-Runge, E.	On the early development - bipolar differentiation and cleavage - of the zebra fish, Brachydanio rerio	Biol. Bull.	1938	75	119-133	
ZDB-PUB-961219-21	none	Suwa, H., Gilland, E., and Baker, R.	Segmental organization of vestibular and reticular projections to spinal and oculomotor nuclei in the zebrafish and goldfish	Biol. Bull.	1996	191(2)	257-259	
ZDB-PUB-961219-24	none	Mizell, M., Stegeman, J.J., Romig, E., Smolowitz, R., Schlezinger, J., Katayani, R., Woodin, B., and Mortensen, M.	Chemically induced cardiovascular defects in developmental states of vertebrates: dose-response and phenotypic comparisons in medaka and zebrafish exposed to aryl hydrocarbon receptor agonists	Biol. Bull.	1996	191(2)	294-295	
ZDB-PUB-031031-6	14583515	Gilland, E., Baker, R., and Denk, W.	Long duration three-dimensional imaging of calcium waves in zebrafish using multiphoton fluorescence microscopy	Biol. Bull.	2003	205(2)	176-177	
ZDB-PUB-961219-22	none	Lee, K.W., Baker, R., Galione, A., Gilland, E.H., Hanlon, R.T., and Miller, A.L.	Ionophore-induced calcium waves activate unfertilized zebrafish (Danio rerio) eggs	Biol. Bull.	1996	191(2)	265-267	
ZDB-PUB-970102-4	7811793	Meng, C.L. and Chang, D.C.	Study of calcium signaling in cell cleavage using confocal microscopy	Biol. Bull.	1994	187(2)	234-5	
ZDB-PUB-980729-34	9687016	Hagmann, M., Bruggmann, R., Xue, L., Georgiev, O., Schaffner, W., Rungger, D., Spaniol, P., and Gerster, T.	Homologous recombination and DNA-end joining reactions in zygotes and early embryos of zebrafish (Danio rerio) and Drosophila melanogaster	Biol. Chem. Hoppe Seyler	1998	379	673-681	
ZDB-PUB-961014-1078		Sterrer, S. and Hoffmann, W.	Molecular characterization of an ependymin precursor from zebrafish brain	Biol. Chem. Hoppe Seyler	1988	369	1212	
ZDB-PUB-071210-44	18064361	Albornoz, A., Yáñez, J.M., Foerster, C., Aguirre, C., Pereiro, L., Burzio, V., Moraga, M., Reyes, A.E., and Antonelli, M.	The CK1 gene family: expression patterning in zebrafish development	Biol. Res.	2007	40(2)	251-266	
ZDB-PUB-081114-26	16874410	Quezada, C., Navarro, C., San Martín, R., Alvarez, M., Molina, A., and Vera, M.I.	Genomic organization of nucleolin gene in carp fish: evidence for several genes	Biol. Res.	2006			
ZDB-PUB-990302-50	10050924	Rowe, R.I., Bouzan, C., Nabili, S., and Eckhert, C.D.	The response of trout and zebrafish embryos to low and high boron concentrations is U-shaped	Biol. Trace Elem. Res.	1998	66	261-270	
ZDB-PUB-051019-2	16221312	Rambabu, K.M., Rao, H.S., and Rao, N.M.	Efficient expression of transgenes in adult zebrafish by electroporation	BMC Biotechnology	2005	5(1)	29	
ZDB-PUB-070726-6	17623073	Malone, M.H., Sciaky, N., Stalheim, L., Hahn, K.M., Linney, E., and Johnson, G.L.	Laser-scanning velocimetry: A confocal microscopy method for quantitative measurement of cardiovascular performance in zebrafish embryos and larvae	BMC Biotechnology	2007	7(1)	40	
ZDB-PUB-080226-12	18230185	Kohli, V., and Elezzabi, A.Y.	Laser surgery of zebrafish (Danio rerio) embryos using femtosecond laser pulses: Optimal parameters for exogenous material delivery, and the laser's effect on short- and long-term development	BMC Biotechnology	2008	8	7	
ZDB-PUB-041018-4	15485583	Vancha, A.R., Govindaraju, S., Parsa, K.V., Jasti, M., Gonzalez-Garcia, M., and Ballestero, R.P.	Use of polyethyleneimine polymer in cell culture as attachment factor and lipofection enhancer	BMC Biotechnology	2004	4(1)	23	
ZDB-PUB-090302-3	19228382	Chan, P.K., Lin, C.C., and Cheng, S.H.	Noninvasive technique for measurement of heartbeat regularity in zebrafish (Danio rerio) embryos	BMC Biotechnology	2009	9	11	
ZDB-PUB-080306-28	18304347	Denvir, M.A., Tucker, C.S., and Mullins, J.J.	Systolic and diastolic ventricular function in zebrafish embryos: influence of norepenephrine, MS-222 and temperature	BMC Biotechnology	2008	8	21	
ZDB-PUB-081029-26	18954456	Alcaraz-Perez, F., Mulero, V., and Cayuela, M.L.	Application of the dual-luciferase reporter assay to the analysis of promoter activity in zebrafish embryos	BMC Biotechnology	2008	8	81	
ZDB-PUB-091204-5	15507134	Grabher, C., and Wittbrodt, J.	Efficient activation of gene expression using a heat-shock inducible Gal4/Vp16-UAS system in medaka	BMC Biotechnology	2004	4	26	
ZDB-PUB-010912-26	11514165	Gee, K.R., Weinberg, E.S., and Kozlowski, D.J.	Caged Q-rhodamine dextran: a new photoactivated fluorescent tracer	Bioorg. Med. Chem. Lett.	2001	11(16)	2181-2183	
ZDB-PUB-000505-2	10803959	Yeh, F.L. and Hsu, T.	Detection of a spontaneous high expression of heat shock protein 70 in developing zebrafish (Danio rerio)	Biosci. Biotechnol. Biochem.	2000	64(3)	592-595	
ZDB-PUB-060703-3	16794310	Lee, J.W., Na, D.S., Kang, J.Y., Lee, S.H., and Ju, B.K.	Differentiation of mouse p19 embryonic carcinoma stem cells injected into an empty zebrafish egg chorion in a microfluidic device	Biosci. Biotechnol. Biochem.	2006	70(6)	1325-1330	
ZDB-PUB-011031-1	11680725	Tamme, R., Mills, K., Rainbird, B., Nornes, S., and Lardelli, M.	Simple, directional cDNA cloning for in situ transcript hybridization screens	Biotechniques	2001	31(4)	938-942	
ZDB-PUB-020219-17	11848405	Moore, J.L., Aros, M., Steudel, K.G., and Cheng, K.C.	Fixation and decalcification of adult zebrafish for histological, immunocytochemical, and genotypic analysis	Biotechniques	2002	32(2)	296-298	
ZDB-PUB-020724-3	11911652	Long, S. and Rebagliati, M.R.	Sensitive two-color whole-mount in situ hybridizations using digoxygenin- and dinitrophenol-labeled RNA probes	Biotechniques	2002	32(3)	494	
ZDB-PUB-031204-20	14628669	Morris IV, J.P., Berghmans, S., Zahrieh, D., Neuberg, D.S., Kanki, J.P., and Look, A.T.	Zebrafish sperm cryopreservation with N,N-dimethylacetamide	Biotechniques	2003	35(5)	956-958	
ZDB-PUB-050825-9	16116796	Berghmans, S., Jette, C., Langenau, D., Hsu, K., Stewart, R., Look, T., and Kanki, J.P.	Making waves in cancer research: new models in the zebrafish	Biotechniques	2005	39(2)	227-237	
ZDB-PUB-970918-13	9105621	Corley-Smith, G.E., Lim, C.J., Kalmar, G.B., and Brandhorst, B.P.	Efficient detection of DNA polymorphisms by fluorescent RAPD analysis	Biotechniques	1997	22(4)	690-692	
ZDB-PUB-001102-2	11056813	Wang, X., Wan, H., Korzh, V., and Gong, Z.	Use of an IRES bicistronic construct to trace expression of exogenously introduced mRNA in zebrafish embryos	Biotechniques	2000	29(4)	814-8	
ZDB-PUB-031204-21	14628668	Teh, C., Chong, S.W., and Korzh, V.	DNA delivery into anterior neural tube of zebrafish embryos by electroporation	Biotechniques	2003	35(5)	950-954	
ZDB-PUB-060403-7	16568816	Burns, C.G., and MacRae, C.A.	Purification of hearts from zebrafish embryos	Biotechniques	2006	40(3)	274, 276, 278	
ZDB-PUB-061229-30	17191618	Tonelli Dde, P., Calegari, F., Fei, J.F., Nomura, T., Osumi, N., Heisenberg, C.P., and Huttner, W.B.	Single-cell detection of microRNAs in developing vertebrate embryos after acute administration of a dual-fluorescence reporter/sensor plasmid	Biotechniques	2006	41(6)	727-732	
ZDB-PUB-071009-6	17907574	Villava, C.E., Arellano-Torres, A., Navarro, R.E., and Maldonado, E.	Freeze-crack technique to study epidermal development in zebrafish using differential interference contrast microscopy and fluorescent markers	Biotechniques	2007	43(3)	313-314	
ZDB-PUB-071219-9	18072590	Meeker, N.D., Hutchinson, S.A., Ho, L., and Trede, N.S.	Method for isolation of PCR-ready genomic DNA from zebrafish tissues	Biotechniques	2007	43(5)	610-614	
ZDB-PUB-080915-5	18778258	Jung Kim, M., Ho Kang, K., Kim, C.H., and Choi, S.Y.	Real-time imaging of mitochondria in transgenic zebrafish expressing mitochondrially targeted GFP	Biotechniques	2008	45(3)	331-334	
ZDB-PUB-990107-5	9793642	Tsao-Wu, G.S., Weber, C.H., Budgeon, L.R., and Cheng, K.C.	Agarose-embedded tissue arrays for histologic and genetic analysis	Biotechniques	1998	25	614-618	
ZDB-PUB-010807-2	11464522	Finley, K.R., Davidson, A.E., and Ekker, S.C.	Three-color imaging using fluorescent proteins in living zebrafish embryos	Biotechniques	2001	31(1)	66-68	
ZDB-PUB-010912-24	11515363	McGowan, R.A., Bjornsson, C., and Abrahams, M.V.	De-chorionation of fixed zebrafish embryos	Biotechniques	2001	31(2)	288-290	
ZDB-PUB-040205-8	10818695	Tamme, R., Camp, E., Kortschak, R.D., and Lardelli, M.	Nonspecific, nested suppression PCR method for isolation of unknown flanking DNA	Biotechniques	2000	28(5)	895-899	
ZDB-PUB-050718-6	16018551	Teh, C., Parinov, S., and Korzh, V.	New ways to admire zebrafish: progress in functional genomics research methodology	Biotechniques	2005	38(6)	897-906	
ZDB-PUB-060207-13	16454037	Havis, E., Anselme, I., and Schneider-Maunoury, S.	Whole embryo chromatin immunoprecipitation protocol for the in vivo study of zebrafish development	Biotechniques	2006	40(1)	34, 36, 38	
ZDB-PUB-070711-35	17612299	J�kely, G., and Arendt, D.	Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy	Biotechniques	2007	42(6)	751-755	
ZDB-PUB-070912-5	17824383	Dmochowski, I.J., and Tang, X.	Taking control of gene expression with light-activated oligonucleotides	Biotechniques	2007	43(2)	161-171	
ZDB-PUB-090330-7	19317655	Fink, M., Callol-Massot, C., Chu, A., Ruiz-Lozano, P., Belmonte, J.C., Giles, W., Bodmer, R., and Ocorr, K.	A new method for detection and quantification of heartbeat parameters in Drosophila, zebrafish, and embryonic mouse hearts	Biotechniques	2009	46(2)	101-113	
ZDB-PUB-090526-15	19450235	Santi, P.A., Johnson, S.B., Hillenbrand, M., GrandPre, P.Z., Glass, T.J., and Leger, J.R.	Thin-sheet laser imaging microscopy for optical sectioning of thick tissues	Biotechniques	2009	46(4)	287-294	
ZDB-PUB-070711-19	17600782	Sparrow, D.B., Chapman, G., Turnpenny, P.D., and Dunwoodie, S.L.	Disruption of the somitic molecular clock causes abnormal vertebral segmentation	Birth Defects Res. C Embryo Today	2007	81(2)	93-110	
ZDB-PUB-061031-8	17061292	Little, S.C., and Mullins, M.C.	Extracellular modulation of BMP activity in patterning the dorsoventral axis	Birth Defects Res. C Embryo Today	2006	78(3)	224-242	
ZDB-PUB-060724-20	16847891	Song, L., and Tuan, R.S.	MicroRNAs and cell differentiation in mammalian development	Birth Defects Res. C Embryo Today	2006	78(2)	140-149	
ZDB-PUB-030310-1	12393445	Donovan, A., Brownlie, A., Dorschner, M., Zhou, Y., Pratt, S.J., Paw, B.H., Thisse, C., Thisse, B., and Zon, L.I.	The zebrafish mutant gene chardonnay (cdy) encodes divalent metal transporter 1 (DMT1)	Blood.	2002	100	4655-4659	
ZDB-PUB-050318-18	15769888	Thattliyath, B., Cykowski, M., and Jagadeeswaran, P.	Young thrombocytes initiate the formation of arterial thrombi in zebrafish	Blood.	2005	106(1)	118-124	
ZDB-PUB-050419-2	15827125	Weber, G.J., Choe, S.E., Dooley, K.A., Paffett-Lugassy, N.N., Zhou, Y., and Zon, L.I.	Mutant-specific gene programs in the zebrafish	Blood.	2005	106(2)	521-530	
ZDB-PUB-050818-11	16099879	Lin, H.F., Traver, D., Zhu, H., Dooley, K., Paw, B.H., Zon, L.I., and Handin, R.I.	Analysis of thrombocyte development in CD41-GFP transgenic zebrafish	Blood.	2005	106(12)	3803-3810	
ZDB-PUB-051114-12	16282348	Gu, Y., Jin, P., Zhang, L., Zhao, X., Gao, X., Ning, Y., Meng, A., and Chen, Y.G.	Functional analysis of mutations in the kinase domain of the TGF-{beta} receptor ALK1 reveals different mechanisms for induction of hereditary hemorrhagic telangiectasia	Blood.	2006	107(5)	1951-1954	
ZDB-PUB-060323-16	16537812	Leung, T., Chen, H., Stauffer, A.M., Giger, K.E., Sinha, S., Horstick, E.J., Humbert, J.E., Hansen, C.A., and Robishaw, J.D.	Zebrafish G protein {gamma}2 is required for VEGF signaling during angiogenesis	Blood.	2006	108(1)	160-166	
ZDB-PUB-060825-19	16926288	Renshaw, S.A., Loynes, C.A., Trushell, D.M., Elworthy, S., Ingham, P.W., and Whyte, M.K.	A transgenic zebrafish model of neutrophilic inflammation	Blood.	2006	108(13)	3976-3978	
ZDB-PUB-070625-7	17545503	Ma, A.C., Ward, A.C., Liang, R., and Leung, A.Y.	The role of jak2a in zebrafish hematopoiesis	Blood.	2007	110(6)	1824-1830	
ZDB-PUB-070820-9	17698971	Bahary, N., Goishi, K., Stuckenholz, C., Weber, G., Leblanc, J., Schafer, C.A., Berman, S.S., Klagsbrun, M., and Zon, L.I.	Duplicate VegfA genes and orthologues of the KDR receptor tyrosine kinase family mediate vascular development in the zebrafish	Blood.	2007	110(10)	3627-3636	
ZDB-PUB-070907-14	17726163	De Domenico, I., Vaughn, M.B., Yoon, D., Kushner, J.P., Ward, D.M., and Kaplan, J.	Zebrafish as a model for defining the functional impact of mammalian ferroportin mutations	Blood.	2007	110(10)	3780-3783	
ZDB-PUB-070920-25	17875807	Le Guyader, D., Redd, M.J., Colucci-Guyon, E., Murayama, E., Kissa, K., Briolat, V., Mordelet, E., Zapata, A., Shinomiya, H., and Herbomel, P.	Origins and unconventional behavior of neutrophils in developing zebrafish	Blood.	2008	111(1)	132-141	
ZDB-PUB-080610-9	18515656	Danilova, N., Sakamoto, K.M., and Lin, S.	Ribosomal protein S19 deficiency in zebrafish leads to developmental abnormalities and defective erythropoiesis through activation of p53 protein family	Blood.	2008	112(13)	5228-5237	
ZDB-PUB-080722-21	18635811	Dobson, J.T., Seibert, J., Teh, E.M., Daas, S., Fraser, R.B., Paw, B.H., Lin, T.J., and Berman, J.N.	Carboxypeptidase A5 identifies a novel mast cell lineage in the zebrafish providing new insight into mast cell fate determination	Blood.	2008	112(7)	2969-2972	
ZDB-PUB-080801-13	18664627	Kawamura, H., Li, X., Goishi, K., van Meeteren, L.A., Jakobsson, L., Cebe-Suarez, S., Shimizu, A., Edholm, D., Ballmer-Hofer, K., Kjellen, L., Klagsbrun, M., and Claesson-Welsh, L.	Neuropilin-1 in regulation of VEGF-induced activation of p38MAPK and endothelial cell organization	Blood.	2008	112(9)	3638-3649	
ZDB-PUB-081028-10	18941117	Fu, Y.F., Du, T.T., Dong, M., Zhu, K.Y., Jing, C.B., Zhang, Y., Wang, L., Fan, H.B., Chen, Y., Jin, Y., Yue, G.P., Chen, S.J., Chen, Z., Huang, Q.H., Jing, Q., Deng, M., and Liu, T.X.	Mir-144 selectively regulates embryonic {alpha}-hemoglobin synthesis during primitive erythropoiesis	Blood.	2009	113(6)	1340-1349	
ZDB-PUB-081203-35	19047682	Fraenkel, P.G., Gibert, Y., Holzheimer, J.L., Lattanzi, V.J., Burnett, S.F., Dooley, K.A., Wingert, R.A., and Zon, L.I.	Transferrin-a modulates hepcidin expression in zebrafish embryos	Blood.	2009	113(12)	2843-2850	
ZDB-PUB-090518-8	19433857	Stachura, D.L., Reyes, J.R., Bartunek, P., Paw, B.H., Zon, L.I., and Traver, D.	Zebrafish kidney stromal cell lines support multilineage hematopoiesis	Blood.	2009	114(2)	279-289	
ZDB-PUB-091120-21	19890097	Kobayashi, I., Ono, H., Moritomo, T., Kano, K., Nakanishi, T., and Suda, T.	Comparative gene expression analysis of zebrafish and mammals identifies common regulators in hematopoietic stem cells	Blood.	2010	115(2)	e1-e9	
ZDB-PUB-100112-24	20056790	Smith, A.C., Raimondi, A.R., Salthouse, C.D., Ignatius, M.S., Blackburn, J.S., Mizgirev, I.V., Storer, N.Y., de Jong, J.L., Chen, A.T., Zhou, Y., Revskoy, S., Zon, L.I., and Langenau, D.M.	High-throughput cell transplantation establishes that tumor-initiating cells are abundant in zebrafish T-cell acute lymphoblastic leukemia	Blood.	2010	\ 	\ 	
ZDB-PUB-100223-24	20154212	Sood, R., English, M.A., Belele, C.L., Jin, H., Bishop, K., Haskins, R., McKinney, M.C., Chahal, J., Weinstein, B.M., Wen, Z., and Liu, P.P.	Development of multi-lineage adult hematopoiesis in the zebrafish with a runx1 truncation mutation	Blood.	2010	\ 	\ 	
ZDB-PUB-100302-14	20185582	Ren, X., Gomez, G.A., Zhang, B., and Lin, S.	Scl isoforms act downstream of etsrp to specify angioblasts and definitive hematopoietic stem cells	Blood.	2010	\ 	\ 	
ZDB-PUB-010423-4	11313249	Lyons, S.E., Shue, B.C., Oates, A.C., Zon, L.I., and Liu, P.P.	A novel myeloid-restricted zebrafish CCAAT/enhancer-binding protein with a potent transcriptional activation domain	Blood.	2001	97(9)	2611-2617	
ZDB-PUB-010807-19	11468162	Bennett, C.M., Kanki, J.P., Rhodes, J., Liu, T.X., Paw, B.H., Kieran, M.W., Langenau, D.M., Delahaye-Brown, A., Zon, L.I., Fleming, M.D., and Look, A.T.	Myelopoiesis in the zebrafish, Danio rerio	Blood.	2001	98(3)	643-651	
ZDB-PUB-010912-8	11535513	Oates, A.C., Pratt, S.J., Vail, B., Yan, Y.-L., Ho, R.K., Johnson, S.L., Postlethwait, J.H., and Zon, L.I.	The zebrafish klf gene family	Blood.	2001	98(6)	1792-1801	
ZDB-PUB-040308-2	14996705	Hsu, K., Traver, D., Kutok, J.L., Hagen, A., Liu, T.X., Paw, B.H., Rhodes, J., Berman, J., Zon, L.I., Kanki, J.P., and Look, A.T.	The pu.1 promoter drives myeloid gene expression in zebrafish	Blood.	2004	104(5)	1291-1297	
ZDB-PUB-040518-4	15142873	Traver, D., Winzeler, A., Stern, H.M., Mayhall, E.A., Langenau, D.M., Kutok, J.L., Look, A.T., and Zon, L.I.	Effects of lethal irradiation in zebrafish and rescue by hematopoietic cell transplantation	Blood.	2004	104(5)	1298-1305	
ZDB-PUB-050113-4	15644413	Patterson, L.J., Gering, M., and Patient, R.	Scl is required for dorsal aorta as well as blood formation in zebrafish embryos	Blood.	2005	105(9)	3502-3511	
ZDB-PUB-050404-8	15802528	Sumanas, S., Jorniak, T., and Lin, S.	Identification of novel vascular endothelial-specific genes by the microarray analysis of the zebrafish cloche mutants	Blood.	2005	106(2)	534-541	
ZDB-PUB-060216-3	16469878	Chen, E., Larson, J.D., and Ekker, S.C.	Functional analysis of zebrafish Microfibril-Associated Glycoprotein-1 (MAGP-1) in vivo reveals roles for microfibrils in both vascular development and function	Blood.	2006	107(11)	4364-4374	
ZDB-PUB-070303-37	17327398	Jin, H., Xu, J., and Wen, Z.	Migratory path of definitive hematopoietic stem/progenitor cells during zebrafish development	Blood.	2007	109(12)	5208-5214	
ZDB-PUB-070513-18	17485548	Camaschella, C., Campanella, A., De Falco, L., Boschetto, L., Merlini, R., Silvestri, L., Levi, S., and Iolascon, A.	The human counterpart of zebrafish shiraz shows sideroblastic-like microcytic anemia and iron overload	Blood.	2007	110(4)	1353-1358	
ZDB-PUB-070907-21	17761518	McReynolds, L.J., Gupta, S., Figueroa, M.E., Mullins, M.C., and Evans, T.	Smad1 and Smad5 differentially regulate embryonic hematopoiesis	Blood.	2007	110(12)	3881-3890	
ZDB-PUB-071227-7	18094332	Cermenati, S., Moleri, S., Cimbro, S., Corti, P., Del Giacco, L., Amodeo, R., Dejana, E., Koopman, P., Cotelli, F., and Beltrame, M.	Sox18 and Sox7 play redundant roles in vascular development	Blood.	2008	111(5)	2657-2666	
ZDB-PUB-080227-13	18258796	Dayyani, F., Wang, J., Yeh, J.R., Ahn, E.Y., Tobey, E., Zhang, D.E., Bernstein, I.D., Peterson, R.T., and Sweetser, D.A.	Loss of TLE1 and TLE4 from the del(9q) commonly deleted region in AML cooperate with AML1-ETO to affect myeloid cell proliferation and survival	Blood.	2008	111(8)	4338-4347	
ZDB-PUB-081022-20	18849488	Pase, L., Layton, J.E., Kloosterman, W.P., Carradice, D., Waterhouse, P.M., and Lieschke, G.J.	miR-451 regulates zebrafish erythroid maturation in vivo via its target gata2	Blood.	2009	113(8)	1794-1804	
ZDB-PUB-081022-37	18927441	Lam, E.Y., Chau, J.Y., Kalev-Zylinska, M.L., Fountaine, T.M., Mead, R.S., Hall, C.J., Crosier, P.S., Crosier, K.E., and Flores, M.V.	Zebrafish runx1 promoter-EGFP transgenics mark discrete sites of definitive blood progenitors	Blood.	2009	113(6)	1241-1249	
ZDB-PUB-090112-17	19131555	Bukrinsky, A., Griffin, K.J., Zhao, Y., Lin, S., and Banerjee, U.	Essential role of spi-1-like (spi-1l) in zebrafish myeloid cell differentiation	Blood.	2009	113(9)	2038-2046	
ZDB-PUB-090311-3	18927432	Pramanik, K., Chun, C.Z., Garnaas, M.K., Samant, G.V., Li, K., Horswill, M.A., North, P.E., and Ramchandran, R.	Dusp-5 and Snrk-1 coordinately function during vascular development and disease	Blood.	2009	113(5)	1184-1191	
ZDB-PUB-090407-3	19332767	Burns, C.E., Galloway, J.L., Smith, A.C., Keefe, M.D., Cashman, T.J., Paik, E.J., Mayhall, E.A., Amsterdam, A.H., and Zon, L.I.	A genetic screen in zebrafish defines a hierarchical network of pathways required for hematopoietic stem cell emergence	Blood.	2009	113(23)	5776-5782	
ZDB-PUB-090814-2	19661268	Urbinati, C., Nicoli, S., Giacca, M., David, G., Fiorentini, S., Caruso, A., Alfano, M., Cassetta, L., Presta, M., and Rusnati, M.	HIV-1 Tat and heparan sulfate proteoglycan interaction: a novel mechanism of lymphocyte adhesion and migration across the endothelium	Blood.	2009	114(15)	3335-3342	
ZDB-PUB-090914-26	19729519	Amigo, J.D., Ackermann, G.E., Cope, J.J., Yu, M., Cooney, J.D., Ma, D., Langer, N.B., Shafizadeh, E., Shaw, G.C., Horsley, W., Trede, N.S., Davidson, A.J., Barut, B.A., Zhou, Y., Wojiski, S.A., Traver, D., Moran, T.B., Kourkoulis, G., Hsu, K., Kanki, J.P., Shah, D.I., Lin, H.F., Handin, R.I., Cantor, A.B., and Paw, B.H.	The role and regulation of friend of GATA-1 (FOG-1) during blood development in the zebrafish	Blood.	2009	114(21)	4654-4663	
ZDB-PUB-990119-23	9885211	Meng, A., Tang, H., Yuan, B.Z., Ong, B.A., Long, Q.M., and Lin, S.	Positive and negative Cis-acting elements are required from hematopoietic expression of zebrafish GATA-1	Blood.	1999	93	500-508	
ZDB-PUB-991102-12	10515866	Oates, A.C., Brownlie, A., Pratt, S.J., Irvine, D.V., Liao, E.C., Paw, B.H., Dorian, K.J., Johnson, S.L., Postlethwait, J.H., Zon, L.I., and Wilks, A.F.	Gene duplication of zebrafish JAK2 homologs is accompanied by divergent embryonic expresssion patterns: only jak2a is expressed during erythropoiesis	Blood.	1999	94(8)	2622-2636	
ZDB-PUB-091023-68	19843882	Belele, C.L., English, M.A., Chahal, J., Burnetti, A., Finckbeiner, S.M., Gibney, G., Kirby, M., Sood, R., and Liu, P.	Differential requirement for Gata1 DNA binding and transactivation between primitive and definitive stages of hematopoiesis in zebrafish	Blood.	2009	12/10/2009	5162-5172	
ZDB-PUB-091101-28	19864643	Li, X., Jia, S., Wang, S., Wang, Y., and Meng, A.	Mta3-NuRD complex is a master regulator for initiation of primitive hematopoiesis in vertebrate embryos	Blood.	2009	114(27)	5464-5472	
ZDB-PUB-091120-8	19880500	Li, K., Blum, Y., Verma, A., Liu, Z., Pramanik, K., Leigh, N.R., Chun, C.Z., Samant, G.V., Zhao, B., Garnaas, M.K., Horswill, M.A., Stanhope, S.A., North, P.E., Miao, R.Q., Wilkinson, G.A., Affolter, M., and Ramchandran, R.	A non-coding antisense RNA in tie-1 locus regulates tie-1 function in vivo	Blood.	2010	115(1)	133-139	
ZDB-PUB-100126-5	20086248	Verma, A., Bhattacharya, R., Remadevi, I., Li, K., Pramanik, K., Samant, G.V., Horswill, M., Chun, C.Z., Zhao, B., Wang, E., Miao, R.Q., Mukhopadhyay, D., Ramchandran, R., and Wilkinson, G.A.	Endothelial cell-specific chemotaxis receptor (ecscr) promotes angioblast migration during vasculogenesis and enhances VEGF receptor sensitivity	Blood.	2010	\ 	\ 	
ZDB-PUB-001221-16	11110689	Blake, T., Adya, N., Kim, C.H., Oates, A.C., Zon, L., Chitnis, A., Weinstein, B.M., and Liu, P.P.	Zebrafish homolog of the leukemia gene CBFB: its expression during embryogenesis and its relationship to scl and gata-1 in hematopoiesis	Blood.	2000	96(13)	4178-4184	
ZDB-PUB-011109-4	11698295	Lieschke, G.J., Oates, A.C., Crowhurst, M.O., Ward, A.C., and Layton, J.E.	Morphologic and functional characterization of granulocytes and macrophages in embryonic and adult zebrafish	Blood.	2001	98(10)	3087-3096	
ZDB-PUB-030721-4	12869502	Ward, A.C., McPhee, D.O., Condron, M.M., Varma, S., Cody, S.H., Onnebo, S.M., Paw, B.H., Zon, L.I., and Lieschke, G.J.	The zebrafish spi1 promoter drives myeloid-specific expression in stable transgenic fish	Blood.	2003	102(9)	3238-3240	
ZDB-PUB-031103-3	14592839	Chen, E., Hermanson, S., and Ekker, S.C.	Syndecan-2 is essential for angiogenic sprouting during zebrafish development	Blood.	2004	103(5)	1710-1719	
ZDB-PUB-041228-25	15618471	Langenau, D.M., Jette, C., Berghmans, S., Palomero, T., Kanki, J.P., Kutok, J.L., and Look, A.T.	Suppression of apoptosis by bcl-2-overexpression in lymphoid cells of transgenic zebrafish	Blood.	2005	105(8)	3278-3285	
ZDB-PUB-050120-2	15650063	Craven, S.E., French, D., Ye, W., de Sauvage, F., and Rosenthal, A.	Loss of hspa9b in zebrafish recapitulates the ineffective hematopoiesis of the myelodysplastic syndromes	Blood.	2005	105(9)	3528-3534	
ZDB-PUB-050308-1	15741222	Yabu, T., Tomimoto, H., Taguchi, Y., Yamaoka, S., Igarashi, Y., and Okazaki, T.	Thalidomide-induced anti-angiogenic action is mediated by ceramide through depletion of VEGF receptors, and antagonized by sphingosine-1-phosphate	Blood.	2005	106(1)	125-134	
ZDB-PUB-051031-5	16254142	Macdonald, B.A., Sund, M., Grant, M.A., Pfaff, K.L., Holthaus, K., Zon, L.I., Kalluri, R.	Zebrafish to humans: evolution of the alpha3-chain of type IV collagen and emergence of the autoimmune epitopes associated with Goodpasture syndrome	Blood.	2006	107(5)	1908-1915	
ZDB-PUB-061116-2	17090656	Patterson, L.J., Gering, M., Eckfeldt, C.E., Green, A.R., Verfaillie, C.M., Ekker, S.C., and Patient, R.	The transcription factors, Scl and Lmo2, act together during development of the haemangioblast in zebrafish	Blood.	2007	109(6)	2389-2398	
ZDB-PUB-070330-17	17369489	Liu, Y., Du, L., Osato, M., Teo, E.H., Qian, F., Jin, H., Zhen, F., Xu, J., Guo, L., Huang, H., Chen, J., Geisler, R., Jiang, Y.J., Peng, J., and Wen, Z.	The zebrafish udu gene encodes a novel nuclear factor and is essential for primitive erythroid cell development	Blood.	2007	110(1)	99-106	
ZDB-PUB-070629-22	17579187	Paffett-Lugassy, N., Hsia, N., Fraenkel, P.G., Paw, B., Leschinsky, I., Barut, B., Bahary, N., Caro, J., Handin, R., and Zon, L.I.	Functional conservation of erythropoietin signaling in zebrafish	Blood.	2007	110(7)	2718-2726	
ZDB-PUB-070813-32	17675553	Wang, C., Faloon, P.W., Tan, Z., Lv, Y., Zhang, P., Ge, Y., Deng, H., and Xiong, J.W.	Mouse lycat controls the development of hematopoietic and endothelial lineages during in vitro ES cell differentiation	Blood.	2007	110(10)	3601-3609	
ZDB-PUB-071016-14	17932252	Kobayashi, I., Saito, K., Moritomo, T., Araki, K., Takizawa, F., and Nakanishi, T.	Characterization and localization of side population (SP) cells in zebrafish kidney hematopoietic tissue	Blood.	2008	111(3)	1131-1137	
ZDB-PUB-071016-7	17934068	Kissa, K., Murayama, E., Zapata, A., Cortes, A., Perret, E., Machu, C., and Herbomel, P.	Live imaging of emerging hematopoietic stem cells and early thymus colonization	Blood.	2008	111(3)	1147-1156	
ZDB-PUB-080228-6	18270322	Sumanas, S., Gomez, G., Zhao, Y., Park, C., Choi, K., and Lin, S.	Interplay between Etsrp/ER71, scl and alk8 signaling controls endothelial and myeloid cell formation	Blood.	2008	111(9)	4500-4510	
ZDB-PUB-080311-8	18326814	Nicoli, S., Tobia, C., Gualandi, L., De Sena, G., and Presta, M.	Calcitonin receptor-like receptor guides arterial differentiation in Zebrafish	Blood.	2008	111(10)	4965-4972	
ZDB-PUB-080902-5	18723694	Chun, C.Z., Kaur, S., Samant, G.V., Wang, L., Pramanik, K., Garnaas, M.K., Li, K., Field, L., Mukhopadhyay, D., and Ramchandran, R.	Snrk-1 is involved in multiple steps of angioblast development and acts via notch signaling pathway in artery-vein specification in vertebrates	Blood.	2009	113(5)	1192-1199	
ZDB-PUB-081001-19	18824598	Ernkvist, M., Luna Persson, N., Audebert, S., Lecine, P., Sinha, I., Liu, M., Schlueter, M., Horowitz, A., Aase, K., Weide, T., Borg, J.P., Majumdar, A., and Holmgren, L.	The Amot/Patj/Syx signalling complex spatially controls RhoA GTPase activity in migrating endothelial cells	Blood.	2009	113(1)	244-253	
ZDB-PUB-090106-23	19109564	O'Connor, M.N., Salles, I.I., Cvejic, A., Watkins, N.A., Walker, A., Garner, S.F., Jones, C.I., Macaulay, I.C., Steward, M., Zwaginga, J.J., Bray, S.L., Dudbridge, F., de Bono, B., Goodall, A.H., Deckmyn, H., Stemple, D.L., and Ouwehand, W.H.	Functional genomics in zebrafish permits rapid characterization of novel platelet membrane proteins	Blood.	2009	113(19)	4754-4762	
ZDB-PUB-090116-21	19139076	Liongue, C., Hall, C.J., O'Connell, B.A., Crosier, P., and Ward, A.C.	Zebrafish granulocyte colony-stimulating factor receptor signaling promotes myelopoiesis and myeloid cell migration	Blood.	2009	113(11)	2535-2546	
ZDB-PUB-090324-15	19304954	van Rooijen, E., Voest, E.E., Logister, I., Korving, J., Schwerte, T., Schulte-Merker, S., Giles, R.H., and van Eeden, F.J.	Zebrafish mutants in the von Hippel-Lindau (VHL) tumor suppressor display a hypoxic response and recapitulate key aspects of Chuvash polycythemia	Blood.	2009	113(25)	6449-6460	
ZDB-PUB-970210-1	9002973	Chan, F.Y., Robinson, J., Brownlie, A., Shivdasani, R.A., Donovan, A., Brugnara, C., Kim, J., Lau, B.C., Witkowska, H.E., and Zon, L.I.	Characterization of adult alpha- and beta-globin genes in the zebrafish	Blood.	1997	89(2)	688-700	
ZDB-PUB-980112-3	7579378	Zon, L.I.	Developmental biology of hematopoiesis	Blood.	1995	86	2876-2891	
ZDB-PUB-100202-8	20107232	Bertrand, J.Y., Cisson, J.L., Stachura, D.L., and Traver, D.	Notch signaling distinguishes two waves of definitive hematopoiesis in the zebrafish embryo	Blood.	2010	\ 	\ 	
ZDB-PUB-100309-12	20197555	Bolli, N., Payne, E.M., Grabher, C., Lee, J.S., Johnston, A.B., Falini, B., Kanki, J.P., and Look, A.T.	Expression of the cytoplasmic NPM1 mutant (NPMc+) causes the expansion of hematopoietic cells in zebrafish	Blood.	2010	\ 	\ 	
ZDB-PUB-030115-3	12411408	Hsieh, D.J.Y. and Liao, C.F.	Zebrafish M2 muscarinic acetylcholine receptor: cloning, pharmacological characterization, expression patterns and roles in embryonic bradycardia	Br. J. Pharmacol.	2002	137(6)	782-792	
ZDB-PUB-041208-13	15644864	Bromee, T., Kukkonen, J.P., Andersson, P., Conlon, J.M., and Larhammar, D.	Pharmacological characterization of ligand-receptor interactions at the zebrafish bradykinin receptor	Br. J. Pharmacol.	2005	144(1)	11-16	
ZDB-PUB-050120-13	15655522	Ruuskanen, J.O., Laurila, J., Xhaard, H., Rantanen, V.V., Vuoriluoto, K., Wurster, S., Marjamaki, A., Vainio, M., Johnson, M.S., and Scheinin, M.	Conserved structural, pharmacological and functional properties among the three human and five zebrafish alpha(2)-adrenoceptors	Br. J. Pharmacol.	2005	144(2)	165-177	
ZDB-PUB-070330-2	17351657	Isenberg, J.S., Jia, Y., Field, L., Ridnour, L.A., Sparatore, A., Del Soldato, P., Sowers, A.L., Yeh, G.C., Moody, T.W., Wink, D.A., Ramchandran, R., and Roberts, D.D.	Modulation of angiogenesis by dithiolethione-modified NSAIDs and valproic acid	Br. J. Pharmacol.	2007	151(1)	63-72	
ZDB-PUB-000309-39	10677620	Poling, K.R. and Brunjes, P.C.	Sensory deafferentation and olfactory bulb morphology in the zebrafish and related species	Brain Res.	2000	856(1-2)	135-141	
ZDB-PUB-000621-1	10825484	Byrd, C.A.	Deafferentation-induced changes in the olfactory bulb of adult zebrafish	Brain Res.	2000	866(1-2)	92-100	
ZDB-PUB-010131-30	11150480	Mathieu, M., Tagliafierro, G., Angelini, C., and Vallarino, M.	Organization of vasoactive intestinal peptide-like immunoreactive system in the brain, olfactory organ and retina of the zebrafish, Danio rerio, during development	Brain Res.	2001	888(2)	235-247	
ZDB-PUB-010601-11	11368958	Tomizawa, K., Katayama, H., and Nakayasu, H.	A novel monoclonal antibody recognizes a previously unknown subdivision of the habenulo-interpeduncular system in zebrafish	Brain Res.	2001	901(1-2)	117-127	
ZDB-PUB-010601-2	11382414	Zhdanova, I.V., Wang, S.Y., Leclair, O.U., and Danilova, N.P.	Melatonin promotes sleep-like state in zebrafish(1)	Brain Res.	2001	903(1-2)	263-268	
ZDB-PUB-030326-1	12650987	Ma, P.M. and Lopez, M.	Consistency in the number of dopaminergic paraventricular organ-accompanying neurons in the posterior tuberculum of the zebrafish brain	Brain Res.	2003	967(1-2)	267-272	
ZDB-PUB-040526-7	15157802	Mueller, T., Vernier, P., and Wullimann, M.F.	The adult central nervous cholinergic system of a neurogenetic model animal, the zebrafish Danio rerio	Brain Res.	2004	1011(2)	156-169	
ZDB-PUB-050513-7	15885223	Fuller, C.L., Villanueva, R., and Byrd, C.A. 	Changes in glutamate receptor subunit 4 expression in the deafferented olfactory bulb of zebrafish	Brain Res.	2005	1044(2)	251-261	
ZDB-PUB-060130-3	16430873	Conway, G., Torrejon, M., Lin, S., and Reinsch, S.	Fluorescent tagged analysis of neural gene function using mosaics in zebrafish and Xenopus laevis	Brain Res.	2006	1070(1)	150-159	
ZDB-PUB-060315-21	16529728	Hughes, I., Thalmann, I., Thalmann, R., and Ornitz, D.M.	Mixing model systems: Using zebrafish and mouse inner ear mutants and other organ systems to unravel the mystery of otoconial development	Brain Res.	2006	1091(1)	58-74	
ZDB-PUB-060807-11	16887104	Lin, W.H., Wu, C.H., Chen, Y.C., and Chow, W.Y.	Embryonic expression of zebrafish AMPA receptor genes: Zygotic gria2alpha expression initiates at the midblastula transition	Brain Res.	2006	1110(1)	46-54	
ZDB-PUB-061227-26	17150198	Kanai, T., Imai, K., and Nakayasu, H.	Distribution of a brain-specific extracellular matrix protein in developing and adult zebrafish	Brain Res.	2007	1129(1)	53-62	
ZDB-PUB-080701-4	18586226	Nelson, B.P., Henriet, R.P., Holt, A.W., Bopp, K.C., Houser, A.P., Allgood, O.E. Jr, and Turner, J.E.	The role of estrogen in the developmental appearance of sensory-motor behaviors in the zebrafish (Danio rerio): The characterization of the "listless" model	Brain Res.	2008	1222	118-128	
ZDB-PUB-081022-17	18848822	Olivari, F.A., Hernández, P.P., and Allende, M.L.	Acute copper exposure induces oxidative stress and cell death in lateral line hair cells of zebrafish larvae	Brain Res.	2008	1244	1-12	
ZDB-PUB-090921-8	19748496	Nagashima, M., Mawatari, K., Tanaka, M., Higashi, T., Saito, H., Muramoto, K., Matsukawa, T., Koriyama, Y., Sugitani, K., and Kato, S.	Purpurin is a key molecule for cell differentiation during the early development of zebrafish retina	Brain Res.	2009	1302	54-63	
ZDB-PUB-961014-747	8773769	McMahon, D.G. and Mattson, M.P.	Horizontal cell electrical coupling in the giant danio: synaptic modulation by dopamine and synaptic maintenance by calcium	Brain Res.	1996	718	89-96	
ZDB-PUB-970918-4	9295208	Michel, W.C. and Derbidge, D.S.	Evidence of distinct amino acid and bile salt receptors in the olfactory system of the zebrafish, Danio rerio	Brain Res.	1997	764(1-2)	179-187	
ZDB-PUB-100202-17	20114034	Kuroyanagi, Y., Okuyama, T., Suehiro, Y., Imada, H., Shimada, A., Naruse, K., Takeda, H., Kubo, T., and Takeuchi, H.	Proliferation zones in adult medaka (Oryzias latipes) brain	Brain Res.	2010	\ 	\ 	
ZDB-PUB-060130-1	16427617	Zilberman-Peled, B., Ron, B., Gross, A., Finberg, J.P., and Gothilf, Y.	A possible new role for fish retinal serotonin-N-acetyltransferase-1 (AANAT1): Dopamine metabolism	Brain Res.	2006	1073-1074	220-228	
ZDB-PUB-060616-46	16765331	Challa, M., Chapa, G.R., Govindaraju, S., Gonzalez-Garcia, M., and Ballestero, R.P.	Characterization of the domains of zRICH, a protein induced during optic nerve regeneration in zebrafish	Brain Res.	2006	1100(1)	42-54	
ZDB-PUB-060816-25	16904081	Weston, M.D., Pierce, M.L., Rocha-Sanchez, S., Beisel, K.W., and Soukup, G.A.	MicroRNA gene expression in the mouse inner ear	Brain Res.	2006	1111(1)	95-104	
ZDB-PUB-070504-22	17466280	Tanaka, M., Murayama, D., Nagashima, M., Higashi, T., Mawatari, K., Matsukawa, T., and Kato, S.	Purpurin expression in the zebrafish retina during early development and after optic nerve lesion in adults	Brain Res.	2007	1153(1)	34-42	
ZDB-PUB-070711-42	17618610	Germanà, A., Paruta, S., Germanà, G.P., Ochoa-Erena, F.J., Montalbano, G., Cobo, J., and Vega, J.A.	Differential distribution of S100 protein and calretinin in mechanosensory and chemosensory cells of adult zebrafish (Danio rerio)	Brain Res.	2007	1162(1)	48-55	
ZDB-PUB-080124-11	18178176	Candal, E., Ferreiro-Galve, S., Anadón, R., and Rodríguez-Moldes, I.	Morphogenesis in the retina of a slow-developing teleost: Emergence of the GABAergic system in relation to cell proliferation and differentiation	Brain Res.	2008	1194(1)	21-27	
ZDB-PUB-080707-7	18597743	Pierce, L.X., Noche, R.R., Ponomareva, O., Chang, C., and Liang, J.O.	Novel functions for Period 3 and Exo-rhodopsin in rhythmic transcription and melatonin biosynthesis within the zebrafish pineal organ	Brain Res.	2008	1223	11-24	
ZDB-PUB-090210-11	12531485	Arata, N., and Nakayasu, H.	A periaxonal net in the zebrafish central nervous system	Brain Res.	2003	961(2)	179-189	
ZDB-PUB-001220-2	11166725	Rink, E. and Wullimann, M.F.	The teleostean (zebrafish) dopaminergic system ascending to the subpallium (striatum) is located in the basal diencephalon (posterior tuberculum)	Brain Res.	2001	889	316-330	
ZDB-PUB-040526-6	15157807	Rink, E., and Wullimann, M.F.	Connections of the ventral telencephalon (subpallium) in the zebrafish (Danio rerio)	Brain Res.	2004	1011(2)	206-220	
ZDB-PUB-060906-15	16942755	Bai, Q., Mullett, S.J., Garver, J.A., Hinkle, D.A., and Burton, E.A.	Zebrafish DJ-1 is evolutionarily conserved and expressed in dopaminergic neurons	Brain Res.	2006	1113(1)	33-44	
ZDB-PUB-070330-11	17362888	Martyniuk, C.J., Awad, R., Hurley, R., Finger, T.E., and Trudeau, V.L.	Glutamic acid decarboxylase 65, 67, and GABA-transaminase mRNA expression and total enzyme activity in the goldfish (Carassius auratus) brain	Brain Res.	2007	1147(1)	154-166	
ZDB-PUB-070920-16	17868657	Appelbaum, L., Skariah, G., Mourrain, P., and Mignot, E.	Comparative expression of p2x receptors and ecto-nucleoside triphosphate diphosphohydrolase 3 in hypocretin and sensory neurons in zebrafish	Brain Res.	2007	1174(1)	66-75	
ZDB-PUB-071016-4	17919464	Clark, A.M., Yun, S., Veien, E.S., Wu, Y.Y., Chow, R.L., Dorsky, R.I., and Levine, E.M.	Negative regulation of Vsx1 by its paralog Chx10/Vsx2 is conserved in the vertebrate retina	Brain Res.	2008	1192(1)	99-113	
ZDB-PUB-090324-12	19302984	Villanueva, R., and Byrd-Jacobs, C.A.	Peripheral sensory deafferentation affects olfactory bulb neurogenesis in zebrafish	Brain Res.	2009	1269	31-39	
ZDB-PUB-961014-1148	2289125	van Asselt, E., van Raamsdonk, W., DeGraaf, F., Smit-Onel, M.J., Diegenbach, P.C., and Heuts, B.	Enzyme histochemical profiles of fish spinal motoneurons after cordotomy and axotomy of motor nerves	Brain Res.	1990	531	25-35	
ZDB-PUB-961014-155	8720875	Cahill, G.M.	Circadian regulation of melatonin production in cultured zebrafish pineal and retina	Brain Res.	1996	708	177-181	
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ZDB-PUB-030319-7	12638130	Wullimann, M.F. and Mueller, T.	Expression of Zash-1a in the postembryonic zebrafish brain allows comparison to mouse Mash1 domains	Brain Res. Gene Expr. Patterns	2002	1(3-4)	187-192	
ZDB-PUB-040709-4	15239899	Fan, L., and Collodi, P.	Progress towards cell-mediated gene transfer in zebrafish	Brief Funct. Genomic Proteomic.	2002	1(2)	131-138	
ZDB-PUB-060616-51	16769673	Amsterdam, A.	Insertional mutagenesis in zebrafish: genes for development, genes for disease	Brief Funct. Genomic Proteomic.	2006	5(1)	19-23	
ZDB-PUB-040709-3	15239891	Sumanas, S., and Larson, J.D.	Morpholino phosphorodiamidate oligonucleotides in zebrafish: A recipe for functional genomics?	Brief Funct. Genomic Proteomic.	2002	1(3)	239-256	
ZDB-PUB-961014-894		Puryear, K. and Hart, N.H.	Acid phosphatase in the ovary of the freshwater teleost, Brachydanio rerio	Bull. N.J. Acad. Sci.	1974	19	26	
ZDB-PUB-961014-1026		Shaw, S.	Lens induction in the zebrafish	Bull. N.J. Acad. Sci.	1967	12	43	
ZDB-PUB-961014-1039		Skidmore, J.F.	Oxygen uptake by zebrafish (Brachydanio rerio) of different ages in relation to zinc sulphate resistance	Can. Fish. Res. Bd. J.	1967	24	1253-1267	
ZDB-PUB-961014-1038		Skidmore, J.F.	Resistance to zinc sulphate of zebrafish (Brachydanio rerio) embryos after removal or rupture of the outer egg membrane	Can. Fish. Res. Bd. J.	1966	23	1037-1041	
ZDB-PUB-010131-32	11149384	Ge, W.	Roles of the activin regulatory system in fish reproduction	Can. J. Physiol. Pharmacol.	2000	78(12)	1077-1085	
ZDB-PUB-961014-1	13472606	Huffman, N.N., Jones, R.W., and Katzberg, A.A.	Antimitotic steriodal estrogens	Cancer	1957	10(4)	707-710	
ZDB-PUB-061221-5	14116213	Jones, R.W., Stout, M.G., Reich, H., and Huffman, M.N.	Cytotoxic activities of certain flavonoids against zebra-fish embryos	Cancer Chemother. Rep.	1964	34	19-20	
ZDB-PUB-961014-514		Jones, R.W., Stout, M.G., Reich, H., and Huffman, M.N.	Cytostatic activities of certain flavonoids against zebra fish embryos	Cancer Chemother. Rep.	1964	34	19-20	
ZDB-PUB-021202-2	12464177	Doitsidou, M., Reichman-Fried, M., Stebler, J., Köprunner, M., Dörries, J., Meyer, D., Esguerra, C.V., Leung, T., and Raz, E.	Guidance of primordial germ cell migration by the chemokine SDF-1	Cell	2002	111(5)	647-659	
ZDB-PUB-060616-26	16751101	Lin, X., Duan, X., Liang, Y.Y., Su, Y., Wrighton, K.H., Long, J., Hu, M., Davis, C.M., Wang, J., Brunicardi, F.C., Shi, Y., Chen, Y.G., Meng, A., and Feng, X.H.	PPM1A functions as a Smad phosphatase to terminate TGFbeta signaling	Cell	2006	125(5)	915-928	
ZDB-PUB-061031-1	17055441	Rawls, J.F., Mahowald, M.A., Ley, R.E., and Gordon, J.I.	Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection	Cell	2006	127(20	423-433	
ZDB-PUB-061108-11	17081969	Curado, S., and Stainier, D.Y.	The HeArt of Regeneration	Cell	2006	127(3)	462-464	
ZDB-PUB-071125-18	18022366	König, H., Matter, N., Bader, R., Thiele, W., and Müller, F.	Splicing Segregation: The Minor Spliceosome Acts outside the Nucleus and Controls Cell Proliferation	Cell	2007	131(4)	718-729	
ZDB-PUB-080209-9	18191225	Hill, M.M., Bastiani, M., Luetterforst, R., Kirkham, M., Kirkham, A., Nixon, S.J., Walser, P., Abankwa, D., Oorschot, V.M., Martin, S., Hancock, J.F., and Parton, R.G.	PTRF-Cavin, a Conserved Cytoplasmic Protein Required for Caveola Formation and Function	Cell	2008	132(1)	113-124	
ZDB-PUB-080309-7	18267065	Knaut, H., and Schier, A.F.	Clearing the path for germ cells	Cell	2008	132(3)	337-339	
ZDB-PUB-080506-13	18455989	Schenck, A., Goto-Silva, L., Collinet, C., Rhinn, M., Giner, A., Habermann, B., Brand, M., and Zerial, M.	The endosomal protein Appl1 mediates Akt substrate specificity and cell survival in vertebrate development	Cell	2008	133(3)	486-497	
ZDB-PUB-080602-17	18510934	Peri, F., and Nüsslein-Volhard, C.	Live Imaging of Neuronal Degradation by Microglia Reveals a Role for v0-ATPase a1 in Phagosomal Fusion In Vivo	Cell	2008	133(5)	916-927	
ZDB-PUB-080924-4	18805097	Del Bene, F., Wehman, A.M., Link, B.A., and Baier, H.	Regulation of neurogenesis by interkinetic nuclear migration through an apical-basal notch gradient	Cell	2008	134(6)	1055-1065	
ZDB-PUB-090324-13	19303855	Goessling, W., North, T.E., Loewer, S., Lord, A.M., Lee, S., Stoick-Cooper, C.L., Weidinger, G., Puder, M., Daley, G.Q., Moon, R.T., and Zon, L.I.	Genetic interaction of PGE2 and Wnt signaling regulates developmental specification of stem cells and regeneration	Cell	2009	136(6)	1136-1147	
ZDB-PUB-090706-12	15260989	Sampath, S.C., Ohi, R., Leismann, O., Salic, A., Pozniakovski, A., and Funabiki, H.	The chromosomal passenger complex is required for chromatin-induced microtubule stabilization and spindle assembly	Cell	2004	118(2)	187-202	
ZDB-PUB-090914-41	19737518	Calarco, J.A., Superina, S., O'Hanlon, D., Gabut, M., Raj, B., Pan, Q., Skalska, U., Clarke, L., Gelinas, D., van der Kooy, D., Zhen, M., Ciruna, B., and Blencowe, B.J.	Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein	Cell	2009	138(5)	898-910	
ZDB-PUB-961014-861	2570637	Patel, N.H., Martin-Blanco, E., Coleman, K.G., Poole, S.J., Ellis, M.C., Kornberg, T.B., and Goodman, C.S.	Expression of engrailed proteins in arthropods annelids and chordates	Cell	1989	58	955-968	
ZDB-PUB-961014-945	8124714	Roelink, H., Augsburger, A., Heemskerk, J., Korzh, V., Norlin, S., Ruiz-i-Altaba, A., Tanabe, Y., Placzek, M., Edlund, T., Jessell, T.M., and Dodd, J.	Floor plate and motor neuron induction by vhh-1, a vertebrate homolog of hedgehog expressed by the notochord	Cell	1994	76	761-775	
ZDB-PUB-980209-1	9458048	Zhang, J., Talbot, W.S., and Schier, A.F.	Positional cloning identifies zebrafish one-eyed pinhead as a permissive EGF-related ligand required during gastrulation	Cell	1998	92	241-251	
ZDB-PUB-980317-4	7600572	Pöpperl, H., Bienz, M., Studer, M., Chan, S., Aparicio, S., Brenner, S., Mann, R., and Krumlauf, R.	Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx	Cell	1995	81	1031-1042	
ZDB-PUB-051004-1	15680328	Yamamoto, A., Nagano, T., Takehara, S., Hibi, M., and Aizawa, S.	Shisa promotes head formation through the inhibition of receptor protein maturation for the caudalizing factors, Wnt and FGF	Cell	2005	120(2)	223-35	
ZDB-PUB-061108-12	17081981	Lepilina, A., Coon, A.N., Kikuchi, K., Holdway, J.E., Roberts, R.W., Burns, C.G., and Poss, K.D.	A Dynamic Epicardial Injury Response Supports Progenitor Cell Activity during Zebrafish Heart Regeneration	Cell	2006	127(3)	607-619	
ZDB-PUB-070424-3	17418787	Houwing, S., Kamminga, L.M., Berezikov, E., Cronembold, D., Girard, A., van den Elst, H., Filippov, D.V., Blaser, H., Raz, E., Moens, C.B., Plasterk, R.H., Hannon, G.J., Draper, B.W., and Ketting, R.F.	A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish	Cell	2007	129(1)	69-82	
ZDB-PUB-070629-10	17574030	Nachury, M.V., Loktev, A.V., Zhang, Q., Westlake, C.J., Peränen, J., Merdes, A., Slusarski, D.C., Scheller, R.H., Bazan, J.F., Sheffield, V.C., and Jackson, P.K.	A Core Complex of BBS Proteins Cooperates with the GTPase Rab8 to Promote Ciliary Membrane Biogenesis	Cell	2007			
ZDB-PUB-070711-25	17604726	Tessmar-Raible, K., Raible, F., Christodoulou, F., Guy, K., Rembold, M., Hausen, H., and Arendt, D.	Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution	Cell	2007	129(7)	1389-1400	
ZDB-PUB-071227-14	18155131	Kedde, M., Strasser, M.J., Boldajipour, B., Oude Vrielink, J.A., Slanchev, K., le Sage, C., Nagel, R., Voorhoeve, P.M., van Duijse, J., Andersson Ørom, U., Lund, A.H., Perrakis, A., Raz, E., and Agami, R.	RNA-Binding Protein Dnd1 Inhibits MicroRNA Access to Target mRNA	Cell	2007	131(7)	1273-1286	
ZDB-PUB-080309-8	18267076	Boldajipour, B., Mahabaleshwar, H., Kardash, E., Reichman-Fried, M., Blaser, H., Minina, S., Wilson, D., Xu, Q., and Raz, E.	Control of chemokine-guided cell migration by ligand sequestration	Cell	2008	132(3)	463-473	
ZDB-PUB-090106-28	19109892	Rai, K., Huggins, I.J., James, S.R., Karpf, A.R., Jones, D.A., and Cairns, B.R.	DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45	Cell	2008	135(7)	1201-1212	
ZDB-PUB-090116-15	19135887	Davis, J.M., and Ramakrishnan, L.	The role of the granuloma in expansion and dissemination of early tuberculous infection	Cell	2009	136(1)	37-49	
ZDB-PUB-090526-17	19450512	Phelps, R.A., Chidester, S., Dehghanizadeh, S., Phelps, J., Sandoval, I.T., Rai, K., Broadbent, T., Sarkar, S., Burt, R.W., and Jones, D.A.	A two-step model for colon adenoma initiation and progression caused by APC loss	Cell	2009	137(4)	623-634	
ZDB-PUB-961014-632	8269519	Krauss, S., Concordet, J.P., and Ingham, P.W.	A functionally conserved homolog of the Drosophila segment polarity gene hh is expressed in tissues with polarizing activity in zebrafish embryos	Cell	1993	75(7)	1431-1444	
ZDB-PUB-970116-2	8978602	Eisen, J.S.	Zebrafish make a big splash	Cell	1996	87(6)	969-977	
ZDB-PUB-020904-1	12150924	Chien, K.R. and Olson, E.N.	Converging pathways and principles in heart development and disease: CV@CSH	Cell	2002	110(2)	153-162	
ZDB-PUB-021015-3	12297045	Chen, F., Kook, H., Milewski, R., Gitler, A., Lu, M., Li, J., Nazarian, R., Schnepp, R., Jen, K., Biben, C., Runke, G., Mackay, J., Novotny, J., Schwartz, R., Harvey, R., Mullins, M., and Epstein, J.	Hop is an unusual homeobox gene that modulates cardiac development	Cell	2002	110(6)	713-723	
ZDB-PUB-021204-1	12464178	Rottbauer, W., Saurin, A.J., Lickert, H., Shen, X., Burns, C.G., Wo, Z.G., Kemler, R., Kingston, R., Wu, C., and Fishman, M.	Reptin and pontin antagonistically regulate heart growth in zebrafish embryos	Cell	2002	111(5)	661-672	
ZDB-PUB-040908-7	15339668	Chang, C.P., Neilson, J.R., Bayle, J.H., Gestwicki, J.E., Kuo, A., Stankunas, K., Graef, I.A., and Crabtree, G.R.	A field of myocardial-endocardial NFAT signaling underlies heart valve morphogenesis	Cell	2004	118(5)	649-663	
ZDB-PUB-080602-16	18510930	Sidi, S., Sanda, T., Kennedy, R.D., Hagen, A.T., Jette, C.A., Hoffmans, R., Pascual, J., Imamura, S., Kishi, S., Amatruda, J.F., Kanki, J.P., Green, D.R., D'Andrea, A.A., and Look, A.T.	Chk1 Suppresses a Caspase-2 Apoptotic Response to DNA Damage that Bypasses p53, Bcl-2, and Caspase-3	Cell	2008	133(5)	864-877	
ZDB-PUB-080714-13	18614017	Palamidessi, A., Frittoli, E., Garré, M., Faretta, M., Mione, M., Testa, I., Diaspro, A., Lanzetti, L., Scita, G., and Di Fiore, P.P.	Endocytic trafficking of rac is required for the spatial restriction of signaling in cell migration	Cell	2008	134(1)	135-147	
ZDB-PUB-081218-12	19070576	De Val, S., Chi, N.C., Meadows, S.M., Minovitsky, S., Anderson, J.P., Harris, I.S., Ehlers, M.L., Agarwal, P., Visel, A., Xu, S.M., Pennacchio, L.A., Dubchak, I., Krieg, P.A., Stainier, D.Y., and Black, B.L.	Combinatorial regulation of endothelial gene expression by ets and forkhead transcription factors	Cell	2008	135(6)	1053-1064	
ZDB-PUB-090526-18	19450519	North, T.E., Goessling, W., Peeters, M., Li, P., Ceol, C., Lord, A.M., Weber, G.J., Harris, J., Cutting, C.C., Huang, P., Dzierzak, E., and Zon, L.I.	Hematopoietic stem cell development is dependent on blood flow	Cell	2009	137(4)	736-748	
ZDB-PUB-090928-4	19766571	Norden, C., Young, S., Link, B.A., and Harris, W.A.	Actomyosin is the main driver of interkinetic nuclear migration in the retina	Cell	2009	138(6)	1195-1208	
ZDB-PUB-961014-388	8402905	Halpern, M.E., Ho, R.K., Walker, C., and Kimmel, C.B.	Induction of muscle pioneers and floor plate is distinguished by the zebrafish no tail mutation	Cell	1993	75	99-111	
ZDB-PUB-990507-1	10199408	Gritsman, K., Zhang, J., Cheng, S., Heckscher, E., Talbot, W.S., and Schier, A.F.	The EGF-CFC protein one-eyed pinhead is essential for nodal signaling	Cell	1999	97(1)	121-132	
ZDB-PUB-091120-6	19879840	Yue, R., Kang, J., Zhao, C., Hu, W., Tang, Y., Liu, X., and Pei, G.	Beta-arrestin1 regulates zebrafish hematopoiesis through binding to YY1 and relieving polycomb group repression	Cell	2009	139(3)	535-546	
ZDB-PUB-080728-11	18649188	Zoidl, G., Kremer, M., Zoidl, C., Bunse, S., and Dermietzel, R.	Molecular diversity of connexin and pannexin genes in the retina of the zebrafish Danio rerio	Cell Commun. Adhes.	2008	15(1)	169-183	
ZDB-PUB-030826-15	12925130	van der Sar, A.M., Musters, R.J., van Eeden, F.J., Appelmelk, B.J., Vandenbroucke-Grauls, C.M., and Bitter, W.	Zebrafish embryos as a model host for the real time analysis of Salmonella typhimurium infections	Cell Microbiol.	2003	5(9)	601-611	
ZDB-PUB-050714-9	16008581	Voth, D.E., Hamm, E.E., Nguyen, L.G., Tucker, A.E., Salles, I.I., Ortiz-Leduc, W., and Ballard, J.D.	Bacillus anthracis oedema toxin as a cause of tissue necrosis and cell type-specific cytotoxicity	Cell Microbiol.	2005	7(8)	1139-1149	
ZDB-PUB-080826-33	18715285	Prajsnar, T.K., Cunliffe, V.T., Foster, S.J., and Renshaw, S.A.	A novel vertebrate model of Staphylococcus aureus infection reveals phagocyte-dependent resistance of zebrafish to non-host specialized pathogens	Cell Microbiol.	2008	10(11)	2312-2325	
ZDB-PUB-090217-28	19207728	Brannon, M.K., Davis, J.M., Mathias, J.R., Hall, C.J., Emerson, J.C., Crosier, P.S., Huttenlocher, A., Ramakrishnan, L., and Moskowitz, S.M.	Pseudomonas aeruginosa Type III secretion system interacts with phagocytes to modulate systemic infection of zebrafish embryos	Cell Microbiol.	2009			
ZDB-PUB-030721-7	12864812	Tucker, A.E., Salles, I.I., Voth, D.E., Ortiz-Leduc, W., Wang, H., Dozmorov, I., Centola, M., and Ballard, J.D.	Decreased glycogen synthase kinase 3-beta levels and related physiological changes in Bacillus anthracis lethal toxin-treated macrophages	Cell Microbiol.	2003	5(8)	523-532	
ZDB-PUB-080825-20	18680203	Costa, M.L., Escaleira, R.C., Jazenko, F., and Mermelstein, C.S.	Cell adhesion in zebrafish myogenesis: Distribution of intermediate filaments, microfilaments, intracellular adhesion structures and extracellular matrix	Cell Motility and Cytoskeleton	2008	65(10)	801-815	
ZDB-PUB-991112-5	10542364	Tomasiewicz, H.G. and Wood, J.G.	Characterization of microtubule-associated proteins in teleosts	Cell Motility and Cytoskeleton	1999	44(3)	155-167	
ZDB-PUB-060508-10	16671106	Redd, M.J., Kelly, G., Dunn, G., Way, M., and Martin, P.	Imaging macrophage chemotaxis in vivo: Studies of microtubule function in zebrafish wound inflammation	Cell Motility and Cytoskeleton	2006	63(7)	415-422	
ZDB-PUB-090424-21	19382198	Sanger, J.W., Wang, J., Holloway, B., Du, A., and Sanger, J.M.	Myofibrillogenesis in skeletal muscle cells in zebrafish	Cell Motility and Cytoskeleton	2009	66(8)	556-566	
ZDB-PUB-010912-2	11512663	Fernández-Llebrez, P., Hernández, S., and Andrades, J.A.	Immunocytochemical detection of Reissner's fiber-like glycoproteins in the subcommissural organ and the floor plate of wildtype and cyclops mutant zebrafish larvae	Cell Tissue Res.	2001	305(1)	115-120	
ZDB-PUB-021105-9	12397371	Pisam, M., Jammet, C., and Laurent, D.	First steps of otolith formation of the zebrafish: role of glycogen?	Cell Tissue Res.	2002	310(2)	163-168	
ZDB-PUB-050623-10	15968550	Van der Heyden, C., Allizard, F., Sire, J.Y., and Huysseune, A.	Tooth development in vitro in two teleost fish, the cichlid Hemichromis bimaculatus and the cyprinid Danio rerio	Cell Tissue Res.	2005	321(3)	375-389	
ZDB-PUB-050920-6	16163489	Saltys, H.A., Jonz, M.G., and Nurse, C.A.	Comparative study of gill neuroepithelial cells and their innervation in teleosts and Xenopus tadpoles	Cell Tissue Res.	2006	323(1)	1-10	
ZDB-PUB-061020-40	17036230	Palevitch, O., Kight, K., Abraham, E., Wray, S., Zohar, Y., and Gothilf, Y.	Ontogeny of the GnRH systems in zebrafish brain: in situ hybridization and promoter-reporter expression analyses in intact animals	Cell Tissue Res.	2007	327(2)	313-322	
ZDB-PUB-080801-16	18665394	Liu, Q., Marrs, J.A., Londraville, R.L., and Wilson, A.L.	Cadherin-7 function in zebrafish development	Cell Tissue Res.	2008	334(1)	37-45	
ZDB-PUB-961014-401	1934030	Hart, N.H. and Collins, G.C.	An electron microscope and freeze-fracture study of the egg cortex of Brachydanio rerio	Cell Tissue Res.	1991	265	317-328	
ZDB-PUB-961014-549	6540624	Kessel, R.G., Beams, H.W., and Tung, H.N.	Relationships between annulate lamellae and filament bundles in oocytes of the zebrafish, Brachydanio rerio	Cell Tissue Res.	1984	236	725-728	
ZDB-PUB-980824-2	9662643	Conrad, M., Lemb, K., Schubert, T., and Markl, J.	Biochemical identification and tissue-specific expression patterns of keratins in the zebrafish Danio rerio	Cell Tissue Res.	1998	293	195-205	
ZDB-PUB-010927-1	11572083	Miyamura, Y. and Nakayasu, H.	Zonal distribution of Purkinje cells in the zebrafish cerebellum: analysis by means of a specific monoclonal antibody	Cell Tissue Res.	2001	305(3)	299-305	
ZDB-PUB-011221-3	11735035	Antonsson, B.C.	Bax and other pro-apoptotic Bcl-2 family "killer-proteins" and their victim the mitochondrion	Cell Tissue Res.	2001	306(3)	347-361	
ZDB-PUB-050803-11	16059702	Garcia, D.M., Bauer, H., Dietz, T., Schubert, T., Markl, J., and Schaffeld, M.	Identification of keratins and analysis of their expression in carp and goldfish: comparison with the zebrafish and trout keratin catalog	Cell Tissue Res.	2005	322(2)	245-256	
ZDB-PUB-060323-30	16550358	Parmentier, C., Taxi, J., Balment, R., Nicolas, G., and Calas, A.	Caudal neurosecretory system of the zebrafish: ultrastructural organization and immunocytochemical detection of urotensins	Cell Tissue Res.	2006	325(1)	111-124	
ZDB-PUB-080227-5	18247060	Leal, M.C., Feitsma, H., Cuppen, E., França, L.R., and Schulz, R.W..	Completion of meiosis in male zebrafish (Danio rerio) despite lack of DNA mismatch repair gene mlh1	Cell Tissue Res.	2008	332(1)	133-139	
ZDB-PUB-080326-7	18335243	Kustermann, S., Schmid, S., Biehlmaier, O., and Kohler, K.	Survival, excitability, and transfection of retinal neurons in an organotypic culture of mature zebrafish retina	Cell Tissue Res.	2008	332(2)	195-209	
ZDB-PUB-090518-17	19440736	Senut, M.C., Azher, S., Margolis, F.L., Patel, K., Mousa, A., and Majid, A.	Distribution of carnosine-like peptides in the nervous system of developing and adult zebrafish (Danio rerio) and embryonic effects of chronic carnosine exposure	Cell Tissue Res.	2009	337(1)	45-61	
ZDB-PUB-971114-3	9321680	Alvarez-Bolado, G., M. Schwarz, and P. Gruss	Pax-2 in chiasm	Cell Tissue Res.	1997	290(2)	197-200	
ZDB-PUB-000629-1	10867821	Poupard, G., Andre, M., Durliat, M., Ballagny, C., Boeuf, G., and Babin, P.J.	Apolipoprotein E gene expression correlates with endogenous lipid nutrition and yolk syncytial layer lipoprotein synthesis during fish development	Cell Tissue Res.	2000	300(2)	251-261	
ZDB-PUB-001208-4	11131132	van der Heyden, C., Huysseune, A., and Sire, J.-Y.	Development and fine structure of pharyngeal replacement teeth in juvenile zebrafish (Danio rerio)(Teleostei, Cyprinidae)	Cell Tissue Res.	2000	302	205-219	
ZDB-PUB-011018-1	11702231	Biehlmaier, O., Neuhauss, S.C.F., and Kohler, K.	Onset and time course of apoptosis in the developing zebrafish retina	Cell Tissue Res.	2001	306	199-207	
ZDB-PUB-020521-6	12012205	Cid, E., Velasco, A., Ciudad, J., Orfao, A., Aijon, J., and Lara, J.M.	Quantitative evaluation of the distribution of proliferating cells in the adult retina in three cyprinid species	Cell Tissue Res.	2002	308(1)	47-59	
ZDB-PUB-030304-10	12596043	Radaelli, G., Rowlerson, A., Mascarello, F., Patruno, M., and Funkenstein, B.	Myostatin precursor is present in several tissues in teleost fish: a comparative immunolocalization study	Cell Tissue Res.	2003	3119(2)	239-250	
ZDB-PUB-031031-1	14586692	Huysseune, A. and Sire, J.-Y.	The role of epithelial remodelling in tooth eruption in larval zebrafish	Cell Tissue Res.	2003	315(1)	85-95	
ZDB-PUB-961014-553	none	Kessel, R.G., Tung, H.N., Beams, H.W., and Roberts, R.	Freeze-fracture studies of annulate lamellae in zebrafish oocytes	Cell Tissue Res.	1985	240	293-301	
ZDB-PUB-961014-866	627021	Pente, J., VanderGaag, M.A., and Lambert, J.G.D.	Ultrastructure and lipid content of the liver of the zebrafish, Brachydanio rerio, related to vitellogenin synthesis	Cell Tissue Res.	1978	186	297-308	
ZDB-PUB-961014-874	none	Peute, J., Huiskamp, R., and VanOordt, P.G.W.J.	Quantitative analysis of estradiol-17.beta.-induced changes in the ultrastructure of the liver of the male zebrafish, Brachydanio rerio	Cell Tissue Res.	1985	242	377-382	
ZDB-PUB-970812-1	9211834	Rowlerson, A., Radaelli, G., Mascarello, F., and Veggetti, A.	Regeneration of skeletal muscle in two teleost fish: Sparus aurata and Brachydanio rerio	Cell Tissue Res.	1997	289(2)	311-322	
ZDB-PUB-011221-4	11734534	Stuhmer, T., Puelles, L., Ekker, M., and Rubenstein, J.L.	Expression from a Dlx gene enhancer marks adult mouse cortical GABAergic neurons	Cereb. Cortex	2002	12(1)	75-85	
ZDB-PUB-020403-16	11923189	Lipschitz, D.L. and Michel, W.C.	Amino acid odorants stimulate microvillar sensory neurons	Chem. Senses	2002	27(3)	277-286	
ZDB-PUB-040225-2	14977805	Lindsay, S.M., and Vogt, R.G.	Behavioral Responses of Newly Hatched Zebrafish (Danio rerio) to Amino Acid Chemostimulants	Chem. Senses	2004	29(2)	93-100	
ZDB-PUB-970917-6	9279469	Wellerdieck, C., Oles, M., Pott, L., Korsching, S., Gisselmann, G., and Hatt, H.	Functional expression of odorant receptors of the zebrafish Danio rerio and of the nematode C. elegans in HEK293 cells	Chem. Senses	1997	22(4)	467-476	
ZDB-PUB-970602-16	9146900	Kotrschal, K., Krautgartner, W.D., and Hansen, A.	Ontogeny of the solitary chemosensory cells in the zebrafish, Danio rerio	Chem. Senses	1997	22(2)	111-118	
ZDB-PUB-980319-1	9530968	Hansen, A. and Zeiske, E.	The peripheral olfactory organ of the zebrafish, Danio rerio: an ultrastructural study	Chem. Senses	1998	23	39-48	
ZDB-PUB-091215-47	19965901	Belanger, R.M., Pachkowski, M.D., and Stacey, N.E.	Methyltestosterone-Induced Changes in Electro-olfactogram Responses and Courtship Behaviors of Cyprinids	Chem. Senses	2010	35(1)	65-74	
ZDB-PUB-060707-1	none	Jin, P., Tian, T., Sun, Z. H., and Meng, A. M.	Generation of mutants with developmental defects in zebrafish by ENU mutagenesis	Chin. Sci. Bull.	2004	49(20)	2154-2158	
ZDB-PUB-021017-72	none	Hu, W., Wang, Y.P., Chen, S.P., and Zhu, Z.Y.	Nuclear transplantation in different strains of zebrafish	Chin. Sci. Bull.	2002	47(15)	1277-1280	
ZDB-PUB-021018-8	none	Li, M., Su, Y., and Meng, A.M.	Induction of cranial and posterior trunk neural crest by exogenous retinoic acid in zebrafish	Chin. Sci. Bull.	2002	47(13)	1105-1108	
ZDB-PUB-030916-1	none	Li, M., Cao, Y., Zhao, Z.X., Lin, S., and Meng, A.M.	Characterization and expression pattern of pouII1, a novel class II POU gene in zebrafish	Chin. Sci. Bull.	2001	46(18)	1523-1527	
ZDB-PUB-990309-414	none	Li, S., Guo, S., and Sun, F.	Expression pattern of a beta2 tubulin gene in zebrafish embryos identified by whole mount in situ hybridization	Chin. Sci. Bull.	1998	43	1894-1898	
ZDB-PUB-030916-2	none	Zhao, C.T., Zhang, Y., Su, Y., and Meng, A.M.	Somite-specific expression of a novel fibronectin variant FN3 is negatively regulated by SHH	Chin. Sci. Bull.	2002	47(21)	1807-1811	
ZDB-PUB-981027-1	none	Li, S., Guo, S., and Sun, F.	Novel gene expressed during early embryogenesis of zebrafish identified by mRNA differential display	Chin. Sci. Bull.	1998	43	936-941	
ZDB-PUB-000824-20	10919729	Gornung, E., De Innocentiis, S., Annesi, F., and Sola, L.	Zebrafish 5S rRNA genes map to the long arms of chromosome 3	Chromosome Res.	2000	8(4)	362	
ZDB-PUB-011217-16	11778689	Traut, W. and Winking, H.	Meiotic chromosomes and stages of sex chromosome evolution in fish: zebrafish, platyfish and guppy	Chromosome Res.	2001	9(8)	659-672	
ZDB-PUB-970702-1	9088642	Gornung, E., Gabrielli, I., Cataudella, S., and Sola, L.	CMA3-banding pattern and fluorescence in situ hybridzation with 18S rRNA genes in zebrafish chromosomes	Chromosome Res.	1997	5(1)	40-46	
ZDB-PUB-000330-1	10730586	Phillips, R.B. and Reed, K.M.	Localization of repetitive DNAs to zebrafish (Danio rerio) chromosomes by fluorescence in situ hybridization (FISH)	Chromosome Res.	2000	8(1)	27-35	
ZDB-PUB-961101-35	8653265	Daga, R.R., Thode, G., and Amores, A.	Chromosome complement, C-banding, Ag-NOR and replication banding in the zebrafish Danio rerio	Chromosome Res.	1996	4	29-32	
ZDB-PUB-040810-8	15298547	Bassett, D., and Currie, P.D.	Identification of a zebrafish model of muscular dystrophy	Clin. Exp. Pharmacol. Physiol.	2004	31(8)	537-540	
ZDB-PUB-100114-2	17381297	Schier, A.F., and Giraldez, A.J.	MicroRNA function and mechanism: insights from zebra fish	Cold Spring Harb. Symp. Quant. Biol.	2006	71	195-203	
ZDB-PUB-961014-824	7791891	Nelson, C.E. and Tabin, C.	Footnote on limb evolution. Nature 375:630-631	Comment on Nature	1995	375	678-681	
ZDB-PUB-040905-1	18629171	Li, Y., Chia, J.M., Bartfai, R., Christoffels, A., Ding, K., Yue, G.H., Ho,M.Y.,  Hill, J.A., Stupka, E. and  Orban, L	Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools	Comp. Func. Genomics	2004	5(5)	403-418	
ZDB-PUB-011031-16	18628903	Chen, J.-N., van Bebber, F., Goldstein, A.M., Serluca, F.C., Jackson, D., Childs, S., Serbedzija, G., Warren, K.S., Mably, J.D., Lindahl, P., Mayer, A., Haffter, P., and Fishman, M.C.	Genetic steps to organ laterality in zebrafish	Comp. Func. Genomics	2001	2(2)	60-68	
ZDB-PUB-011031-17	18628921	Feldman, B.	The Second European Conference on Zebrafish Genetics and Development	Comp. Func. Genomics	2001	2(4)	252-256	
ZDB-PUB-050211-7	15680582	Akindahunsi, A.A., Bandiera, A., and Manzini, G.	Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences	Comput. Biol. Chem.	2005	29(1)	13-23	
ZDB-PUB-030805-3	12893971	Teraoka, H., Dong, W., and Hiraga, T.	Zebrafish as a novel experimental model for developmental toxicology	Congenit. Anom. Kyoto	2003	43(2)	123-132	
ZDB-PUB-050617-9	none	Fang, F.	Phylogenetic Analysis of the Asian Cyprinid Genus Danio (Teleostei, Cyprinidae)	Copeia	2003	4	714-728	
ZDB-PUB-961014-254		Eaton, R. and Farley, R.D.	Growth and reduction of depensation of zebrafish, Brachydanio rerio, reared in the laboratory	Copeia	1974	1	204-209	
ZDB-PUB-961014-407		Hart, N.H. and Messina, M.	Artificial insemination of ripe eggs in the zebrafish, Brachydanio rerio	Copeia	1972	2	302-305	
ZDB-PUB-961014-1205		Waldman, B.	Quantitative and developmental analyses of the alarm reaction in the zebra Danio, Brachydanio rerio	Copeia	1982	1982	1-9	
ZDB-PUB-961014-162		Carr, M.G. and Carr, J.E.	Characterization of an aggression suppression pheromone in the juvenile brown bullhead Ictalurus-nebulosus	Copeia	1986	1986	540-544	
ZDB-PUB-961014-252	none	Eaton, R. and Farley, R.D.	Development of the Mauthner neurons in embryos and larvae of the zebrafish, Brachydanio rerio	Copeia	1973	4	673-682	
ZDB-PUB-961014-468	none	Howell, W.M. and Butts, D.E.	Silver staining of spermatozoa from living and preserved museum fishes a new taxonomic approach	Copeia	1983	1983	974-978	
ZDB-PUB-961014-129		Breder, C.M. and Roemhild, J.	Comparative behavior of various fishes under differing conditions of aggregation	Copeia	1947	1	29-40	
ZDB-PUB-961014-190	none	Creaser, C.W.	The technic of handling the zebra fish (Brachydanio rerio) for the production of eggs which are favorable for embryological research and are available at any specified time throughout the year	Copeia	1934	4	159-161	
ZDB-PUB-961014-253		Eaton, R. and Farley, R.D.	Spawning cycle and egg production of zebrafish, Brachydanio rerio, in the laboratory	Copeia	1974	1	195-204	
ZDB-PUB-961014-452	none	Hisaoka, K.K. and Firlit, C.F.	Ovarian cycle and egg production in the zebrafish, Brachydanio rerio	Copeia	1962	4	788-792	
ZDB-PUB-961014-54		Armstrong, J.G.	Squamation chronology of the zebrafish (Cyprinidae), Brachydanio rerio	Copeia	1973	4	823-824	
ZDB-PUB-961014-688		Legault, R.	A technique for controlling the time of daily spawning and collecting of eggs of the zebra fish, Brachydanio rerio (Hamilton-Buchanan)	Copeia	1958	4	328-330	
ZDB-PUB-961014-699	none	Lewis, W.H.	Morphological adaptations of cyprinodontoids for inhabiting oxygen deficient waters	Copeia	1970	2	319-326	
ZDB-PUB-000927-2	10985389	Childs, S., Weinstein, B.M., Mohideen, M.A.P.K., Donohue, S., Bonkovsky, H., and Fishman, M.C.	Zebrafish dracula encodes ferrochelatase and its mutation provides a model for erythropoietic protoporphyria	Current biology : CB	2000	10(16)	1001-1004	
ZDB-PUB-001003-3	10996075	Henry, C.A., Hall, L.A., Hille, M.B., Solnica-Krezel, L., and Cooper, M.S.	Somites in zebrafish doubly mutant for knypek and trilobite form without internal mesenchymal cells or compaction	Current biology : CB	2000	10(17)	1063-1066	
ZDB-PUB-010525-1	11413000	Roehl, H. and Nüsslein-Volhard, C.	Zebrafish pea3 and erm are general targets of FGF8 signaling	Current biology : CB	2001	11	503-507	
ZDB-PUB-010905-2	11553329	Kawahara, A. and Dawid, I.B.	Critical role of biklf in erythroid cell differentiation in zebrafish	Current biology : CB	2001	11(17)	1353-1357	
ZDB-PUB-010924-1	11566102	Barresi, M.J.F., D'Angelo, J.A., Hernández, L.P., and Devoto, S.H.	Distinct mechanisms regulate slow-muscle development	Current biology : CB	2001	11(18)	1432-1438	
ZDB-PUB-020305-1	11864568	Wolke, U., Weidinger, G., Köprunner, M., and Raz, E.	Multiple levels of post-transcriptional control lead to germ line specific gene expression in the zebrafish	Current biology : CB	2002	12(4)	289-294	
ZDB-PUB-020402-11	11909536	Serluca, F.C., Drummond, I.A., and Fishman, M.C.	Endothelial signaling in kidney morphogenesis. A role for hemodynamic forces	Current biology : CB	2002	12(6)	492-497	
ZDB-PUB-020521-4	12015122	Cermakian, N., Pando, M.P., Thompson, C.L., Pinchak, A.B., Selby, C.P., Gutierrez, L., Wells, D.E., Cahill, G.M., Sancar, A., Sassone-Corsi, P.	Light induction of a vertebrate clock gene involves signaling through blue-light receptors and MAP kinases	Current biology : CB	2002	12(10)	844-888	
ZDB-PUB-020624-2	12062050	Marlow, F., Topczewski, J., Sepich, D., and Solnica-Krezel, L.	Zebrafish rho kinase 2 acts downstream of wnt11 to mediate cell polarity and effective convergence and extension movements	Current biology : CB	2002	12(11)	876-884	
ZDB-PUB-020730-1	12176331	Stafford, D. and Prince, V.E.	Retinoic acid signaling is required for a critical early step in zebrafish pancreatic development	Current biology : CB	2002	12(14)	1215-1220	
ZDB-PUB-020730-2	12121619	Walshe, J., Maroon, H., McGonnell, I.M., Dickson, C., and Mason, I.	Establishment of hindbrain segmental identity requires signaling by FGF3 and FGF8	Current biology : CB	2002	12(13)	1117-1123	
ZDB-PUB-030114-1	12526749	Shiomi, K., Uchida, H., Keino-Masu, K., and Masu, M.	Ccd1, a novel protein with a DIX domain, is a positive regulator in the Wnt signaling during zebrafish neural patterning	Current biology : CB	2003	13(1)	73-77	
ZDB-PUB-030128-2	11591315	Peterson, R.T., Mably, J.D., Chen, J.-N., and Fishman, M.C.	Convergence of distinct pathways to heart patterning reveals by the small molecule concentramide and the mutation heart-and-soul	Current biology : CB	2001	11	1481-1491	
ZDB-PUB-030826-4	12932328	Weidinger, G., Stebler, J., Slanchev, K., Dumstrei, K., Wise, C., Lovell-Badge, R., Thisse, C., Thisse, B., and Raz, E.	dead end, a novel vertebrate germ plasm component, is required for zebrafish primordial germ cell migration and survival	Current biology : CB	2003	13(16)	1429-1434	
ZDB-PUB-031217-1	14680629	Mably, J.D., Mohideen, M.A.P.K., Burns, C.G., Chen, J.-N., and Fishman, M.C.	heart of glass regulates the concentric growth of the heart in zebrafish	Current biology : CB	2003	13(24)	2138-2147	
ZDB-PUB-040319-3	15027466	Auman, H.J., and Yelon, D.	Vertebrate organogenesis: getting the heart into shape	Current biology : CB	2004	14(4)	R152-153	
ZDB-PUB-041216-12	12007417	Lagos-Quintana, M., Rauhut, R., Yalcin, A., Meyer, J., Lendeckel, W., Tuschl, T.	Identification of tissue-specific microRNAs from mouse	Current biology : CB	2002	12(9)	735-9	
ZDB-PUB-050119-7	15649361	Le Good, J.A., Joubin, K., Giraldez, A.J., Ben-Haim, N., Beck, S., Chen, Y., Schier, A.F., and Constam, D.B.	Nodal stability determines signaling range	Current biology : CB	2005	15(1)	31-36	
ZDB-PUB-050404-4	15797022	Cooke, J.E., Kemp, H.A., and Moens, C.B.	EphA4 Is Required for Cell Adhesion and Rhombomere-Boundary Formation in the Zebrafish	Current biology : CB	2005	15(6)	536-542	
ZDB-PUB-050413-15	15823540	Elizondo, M.R., Arduini, B.L., Paulsen, J., MacDonald, E.L., Sabel, J.L., Henion, P.D., Cornell, R.A., Parichy, D.M.	Defective Skeletogenesis with Kidney Stone Formation in Dwarf Zebrafish Mutant for trpm7	Current biology : CB	2005	15(7)	667-671	
ZDB-PUB-050513-11	15886097	Sagasti, A., Guido, M.R., Raible, D.W., and Schier, A.F.	Repulsive interactions shape the morphologies and functional arrangement of zebrafish peripheral sensory arbors	Current biology : CB	2005	15(9)	804-814	
ZDB-PUB-051128-7	16303569	Venkatesh, B., Lu, S.Q., Dandona, N., See, S.L., Brenner, S., and Soong, T.W.	Genetic basis of tetrodotoxin resistance in pufferfishes	Current biology : CB	2005	15(22)	2069-2072	
ZDB-PUB-060522-10	14986634	Tamai, T.K., Vardhanabhuti, V., Foulkes, N.S., and Whitmore, D.	Early embryonic light detection improves survival	Current biology : CB	2004	14(3)	R104-105	
ZDB-PUB-060906-25	16950093	Burke, Z.D., Thowfeequ, S., and Tosh, D.	Liver specification: a new role for wnts in liver development	Current biology : CB	2006	16(17)	R688-690	
ZDB-PUB-070303-41	17331724	von der Hardt, S., Bakkers, J., Inbal, A., Carvalho, L., Solnica-Krezel, L., Heisenberg, C.P., and Hammerschmidt, M.	The Bmp Gradient of the Zebrafish Gastrula Guides Migrating Lateral Cells by Regulating Cell-Cell Adhesion	Current biology : CB	2007	17(6)	475-487	
ZDB-PUB-070303-44	17331725	Voas, M.G., Lyons, D.A., Naylor, S.G., Arana, N., Rasband, M.N., and Talbot, W.S.	alphaII-Spectrin Is Essential for Assembly of the Nodes of Ranvier in Myelinated Axons	Current biology : CB	2007	17(6)	562-568	
ZDB-PUB-070513-14	17481897	Ryu, S., Mahler, J., Acampora, D., Holzschuh, J., Erhardt, S., Omodei, D., Simeone, A., and Driever, W.	Orthopedia Homeodomain Protein Is Essential for Diencephalic Dopaminergic Neuron Development	Current biology : CB	2007	17(10)	873-880	
ZDB-PUB-071118-7	11250163	Martinon, F., Hofmann, K., and Tschopp, J.	The pyrin domain: a possible member of the death domain-fold family implicated in apoptosis and inflammation	Current biology : CB	2001	11(4)	R118-R120	
ZDB-PUB-071125-26	18029256	Martin, B.L., and Kimelman, D.	Developmental Biology: Micro(RNA)-Managing Nodal	Current biology : CB	2007	17(22)	R975--R977	
ZDB-PUB-080825-23	18682213	Douglass, A.D., Kraves, S., Deisseroth, K., Schier, A.F., and Engert, F.	Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons	Current biology : CB	2008	18(15)	1133-1137	
ZDB-PUB-080826-40	18718762	Liu, F., Walmsley, M., Rodaway, A., and Patient, R.	Fli1 Acts at the Top of the Transcriptional Network Driving Blood and Endothelial Development	Current biology : CB	2008	18(16)	1234-1240	
ZDB-PUB-090204-35	19185493	Fischer, R.S., Gardel, M., Ma, X., Adelstein, R.S., and Waterman, C.M.	Local Cortical Tension by Myosin II Guides 3D Endothelial Cell Branching	Current biology : CB	2009	19(3)	260-265	
ZDB-PUB-090526-32	19464179	Zhao, X., Sirbu, I.O., Mic, F.A., Molotkova, N., Molotkov, A., Kumar, S., and Duester, G.	Retinoic Acid Promotes Limb Induction through Effects on Body Axis Extension but Is Unnecessary for Limb Patterning	Current biology : CB	2009	19(12)	1050-1057	
ZDB-PUB-990302-45	10074451	Appel, B., Fritz, A., Westerfield, M., Grunwald, D.J., Eisen, J.S., and Riley, B.B.	Delta-mediated specification of midline cell fates in zebrafish embryos	Current biology : CB	1999	9	247-256	
ZDB-PUB-991102-7	10531010	Ho, C.Y., Houart, C., Wilson, S.W., and Stainier, D.Y.	A role for the extraembryonic yolk syncytial layer in patterning the zebrafish embryo suggested by properties of the hex gene	Current biology : CB	1999	9(19)	1131-1134	
ZDB-PUB-091204-18	19931456	Sobral, D., Tassy, O., and Lemaire, P.	Highly Divergent Gene Expression Programs Can Lead to Similar Chordate Larval Body Plans	Current biology : CB	2009	19(23)	2014-2019	
ZDB-PUB-000510-4	10801442	Feldman, B., Dougan, S.T., Schier, A.F., and Talbot, W.S.	Nodal-related signals establish mesendodermal fate and trunk neural identity in zebrafish	Current biology : CB	2000	10(9)	531-534	
ZDB-PUB-001003-1	10996071	Pogoda, H.M., Solnica-Krezel, L., Driever, W., and Meyer, D.	The zebrafish forkhead transcription factor FoxH1/Fast1 is a modulator of Nodal signaling required for organizer formation	Current biology : CB	2000	10(17)	1041-1049	
ZDB-PUB-010905-3	11553330	Roy, S., Qiao, T., Wolff, C., and Ingham, P.W.	Hedgehog signaling pathway is essential for pancreas specification in the zebrafish embryo	Current biology : CB	2001	11(17)	1358-1363	
ZDB-PUB-011002-3	11591316	Horne-Badovinac, S., Lin, D., Waldron, S., Schwarz, M, Mbamalu, G., Pawson, T., Jan, Y.-N., Stainier, D.Y.R., and Abdelilah-Seyfried, S.	Positional cloning of heart and soul reveals multiple roles for PKCl in zebrafish organogenesis	Current biology : CB	2001	11(19)	1492-1502	
ZDB-PUB-011203-4	11728308	Köster, R.W. and Fraser, S.E.	Direct imaging of in vivo neuronal migration in the developing cerebellum	Current biology : CB	2001	11(23)	1858-1863	
ZDB-PUB-020820-7	12194822	Habeck, H., Odenthal, J., Walderich, B., Maischein, H.-M., Tübingen 2000 screen consortium, and Schulte-Merker, S.	Analysis of a zebrafish VEGF receptor mutant reveals specific disruption of angiogenesis	Current biology : CB	2002	12(16)	1405-1412	
ZDB-PUB-021212-2	12477391	Langheinrich, U., Hennen, E., Stott, G., and Vacun, G.	Zebrafish as a model organism for the identification and characterization of drugs and genes affecting p53 signaling	Current biology : CB	2002	12(23)	2023-2028	
ZDB-PUB-030716-31	12699625	Takeuchi, M., Nakabayashi, J., Sakaguchi, T., Yamamoto, T.S., Takahashi, H., Takeda, H., and Ueno, N.	The prickle-related gene in vertebrates is essential for gastrulation cell movements	Current biology : CB	2003	13(8)	674-679	
ZDB-PUB-030826-5	12932323	Lewis, J.	Autoinhibition with transcriptional delay. A simple mechanism for the zebrafish somitogenesis oscillator	Current biology : CB	2003	13(16)	1398-1408	
ZDB-PUB-040408-5	15062104	Chen, C., and Shen, M.M.	Two Modes by which Lefty Proteins Inhibit Nodal Signaling	Current biology : CB	2004	14(7)	618-624	
ZDB-PUB-040416-3	15084287	Jensen, A.M., and Westerfield, M.	Zebrafish Mosaic Eyes Is a Novel FERM Protein Required for Retinal Lamination and Retinal Pigmented Epithelial Tight Junction Formation	Current biology : CB	2004	14(8)	711-717	
ZDB-PUB-040611-3	15186744	Engeszer, R.E., Ryan, M.J., and Parichy, D.M.	Learned social preference in zebrafish	Current biology : CB	2004	14(10)	881-884	
ZDB-PUB-041004-2	15380064	Daggett, D.F., Boyd, C.A,. Gautier, P., Bryson-Richardson, R.J., Thisse, C., Thisse, B., Amacher, S.L., and Currie, P.D.	Developmentally restricted actin-regulatory molecules control morphogenetic cell movements in the zebrafish gastrula	Current biology : CB	2004	14(18)	632-638	
ZDB-PUB-041006-6	15458650	Roy, S., and Ng, T.	Blimp-1 specifies neural crest and sensory neuron progenitors in the zebrafish embryo	Current biology : CB	2004	14(19)	1772-1777	
ZDB-PUB-050209-10	15694309	Patton, E.E., Widlund, H.R., Kutok, J.L., Kopani, K.R., Amatruda, J.F., Murphey, R.D., Berghmans, S., Mayhall, E.A., Traver, D., Fletcher, C.D., Aster, J.C., Granter, S.R., Look, A.T., Lee, C., Fisher, D.E., and Zon, L.I.	BRAF Mutations Are Sufficient to Promote Nevi Formation and Cooperate with p53 in the Genesis of Melanoma	Current biology : CB	2005	15(3)	249-254	
ZDB-PUB-050209-9	15694307	Aizawa, H., Bianco, I.H., Hamaoka, T., Miyashita, T., Uemura, O., Concha, M.L., Russell, C., Wilson, S.W., and Okamoto, H.	Laterotopic Representation of Left-Right Information onto the Dorso-Ventral Axis of a Zebrafish Midbrain Target Nucleus	Current biology : CB	2005	15(3)	238-243	
ZDB-PUB-050404-2	15797017	Weidinger, G., Thorpe, C.J., Wuennenberg-Stapleton, K., Ngai, J., and Moon, R.T.	The Sp1-Related Transcription Factors sp5 and sp5-like Act Downstream of Wnt/beta-Catenin Signaling in Mesoderm and Neuroectoderm Patterning	Current biology : CB	2005	15(6)	489-500	
ZDB-PUB-050513-12	15886103	Barth, K.A., Miklosi, A., Watkins, J., Bianco, I.H., Wilson, S.W., and Andrew, R.J.	fsi Zebrafish Show Concordant Reversal of Laterality of Viscera, Neuroanatomy, and a Subset of Behavioral Responses	Current biology : CB	2005	15(9)	844-850	
ZDB-PUB-070212-31	17276918	D'Amico, L., Scott, I.C., Jungblut, B., and Stainier, D.Y.	A Mutation in Zebrafish hmgcr1b Reveals a Role for Isoprenoids in Vertebrate Heart-Tube Formation	Current biology : CB	2007	17(3)	252-259	
ZDB-PUB-070330-22	17371758	Wallingford, J.B., and Harland, R.M.	Vertebrate Gastrulation: The BMP Sticker Shock	Current biology : CB	2007	17(6)	R206-209	
ZDB-PUB-070813-15	17683938	Jazwinska, A., Badakov, R., and Keating, M.T.	Activin-betaA Signaling Is Required for Zebrafish Fin Regeneration	Current biology : CB	2007	17(16)	1390-1395	
ZDB-PUB-080218-33	14680649	Parichy, D.M.	Pigment patterns: fish in stripes and spots	Current biology : CB	2003	13(24)	R947-950	
ZDB-PUB-081217-22	19062281	Osborne, N., Brand-Arzamendi, K., Ober, E.A., Jin, S.W., Verkade, H., Holtzman, N.G., Yelon, D., and Stainier, D.Y.	The spinster homolog, two of hearts, is required for sphingosine 1-phosphate signaling in zebrafish	Current biology : CB	2008	18(23)	1882-1888	
ZDB-PUB-090309-1	19249209	Bontems, F., Stein, A., Marlow, F., Lyautey, J., Gupta, T., Mullins, M.C., and Dosch, R.	Bucky Ball Organizes Germ Plasm Assembly in Zebrafish	Current biology : CB	2009	19(5)	414-422	
ZDB-PUB-090921-6	19747827	Lee, C.Y., Vogeli, K.M., Kim, S.H., Chong, S.W., Jiang, Y.J., Stainier, D.Y., and Jin, S.W.	Notch Signaling Functions as a Cell-Fate Switch between the Endothelial and Hematopoietic Lineages	Current biology : CB	2009	19(19)	1616-1622	
ZDB-PUB-000111-2	10607587	Pelegri, F., Knaut, H., Maischein, H.M., Schulte-Merker, S., and Nüsslein-Volhard, C.	A mutation in the zebrafish maternal-effect gene nebel affects furrow formation and vasa RNA localization	Current biology : CB	1999	9(24)	1431-1440	
ZDB-PUB-000510-5	10801422	Kawakami, K., Amsterdam, A., Shimoda, N., Becker, T., Mugg, J., Shima, A., and Hopkins, N.	Proviral insertions in the zebrafish hagoromo gene, encoding an F-box/WD40-repeat protein, cause stripe pattern anomalies	Current biology : CB	2000	10(8)	463-466	
ZDB-PUB-000623-6	10837226	Rick, J.M., Horschke, I., and Neuhauss, S.C.	Optokinetic behavior is reversed in achiasmatic mutant zebrafish larvae	Current biology : CB	2000	10(10)	595-598	
ZDB-PUB-001003-2	10996072	Sirotkin, H.I., Gates, M.A., Kelly, P.D., Schier, A.F., and Talbot, W.S.	fast1 is required for the development of dorsal axial structures in zebrafish	Current biology : CB	2000	10(17)	1051-1054	
ZDB-PUB-010404-14	11250159	Müller, F., Lakatos, L., Dantonel, J., Strähle, U., and Tora, L.	TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish	Current biology : CB	2001	11(4)	282-287	
ZDB-PUB-010905-4	11525740	Carmany-Rampey, A. and Schier, A.F.	Single-cell internalization during zebrafish gastrulation	Current biology : CB	2001	11(16)	1261-1265	
ZDB-PUB-020402-10	11909530	Knaut, H., Steinbeisser, H., Schwarz, H., and Nüsslein-Volhard, C.	An evolutionary conserved region in the vasa 3'UTR targets RNA translation to the germ cells in the zebrafish	Current biology : CB	2002	12(6)	454-466	
ZDB-PUB-030430-2	12699626	Veeman, M.T., Slusarski, D.C., Kaykas, A., Louie, S.H., and Moon, R.T.	Zebrafish prickle, a modulator of noncanonical wnt/fz signaling, regulates gastrulation movements	Current biology : CB	2003	13(8)	680-685	
ZDB-PUB-030714-4	12867027	Wolff, C., Roy, S., and Ingham, P.W.	Multiple muscle cell identities induced by distinct levels and timing of hedgehog activity in the zebrafish embryo	Current biology : CB	2003	13(14)	1169-1181	
ZDB-PUB-030812-4	12906787	Montero, J.-A., Killan, B., Chan, J., Bayliss, P.E., and Heisenberg, C.-P.	Phosphoinositide 3-kinase is required for process outgrowth and cell polarization of gastrulating mesendodermal cells	Current biology : CB	2003	13(15)	1279-1289	
ZDB-PUB-031203-1	14653994	Dekens, M.P.S., Santoriello, C., Vallone, D., Grassi, G., Whitmore, D., and Foulkes, N.S.	Light regulates the cell cycle in zebrafish	Current biology : CB	2003	13(23)	2051-2057	
ZDB-PUB-040319-2	15027468	Hughes, S.M.	Muscle differentiation: a gene for slow muscle?	Current biology : CB	2004	14(4)	156-157	
ZDB-PUB-040109-3	14711414	Lunde, K., Belting, H.G., and Driever, W.	Zebrafish pou5f1/pou2, homolog of mammalian Oct4, functions in the endoderm specification cascade	Current biology : CB	2004	14(1)	48-55	
ZDB-PUB-040408-6	15062100	Bartfai, R., Balduf, C., Hilton, T., Rathmann, Y., Hadzhiev, Y., Tora, L., Orbán, L., and Muller, F.	TBP2, a Vertebrate-Specific Member of the TBP Family, Is Required in Embryonic Development of Zebrafish	Current biology : CB	2004	14(7)	593-598	
ZDB-PUB-040416-4	15084283	Amack, J.D., and Yost, H.J.	The T box transcription factor no tail in ciliated cells controls zebrafish left-right asymmetry	Current biology : CB	2004	14(8)	685-690	
ZDB-PUB-041026-1	15498491	Scholpp, S., and Brand, M.	Endocytosis controls spreading and effective signaling range of fgf8 protein	Current biology : CB	2004	14(20)	1834-1841	
ZDB-PUB-050309-4	15753045	Kawakami, A., Nojima, Y., Toyoda, A., Takahoko, M., Satoh, M., Tanaka, H., Wada, H., Masai, I., Terasaki, H., Sakaki, Y., Takeda, H., and Okamoto, H.	The zebrafish-secreted matrix protein you/scube2 is implicated in long-range regulation of hedgehog signaling	Current biology : CB	2005	15(5)	480-488	
ZDB-PUB-050404-3	15797019	Lyons, D.A., Pogoda, H.M., Voas, M.G., Woods, I.G., Diamond, B., Nix, R., Arana, N., Jacobs, J., and Talbot, W.S.	erbb3 and erbb2 Are Essential for Schwann Cell Migration and Myelination in Zebrafish	Current biology : CB	2005	15(6)	513-524	
ZDB-PUB-050803-7	16051172	Correa, R.G., Matsui, T., Tergaonkar, V., Rodriguez-Esteban, C., Izpisua-Belmonte, J.C., and Verma, I.M.	Zebrafish IkappaB Kinase 1 Negatively Regulates NF-kappaB Activity	Current biology : CB	2005	15(14)	1291-1295	
ZDB-PUB-060302-11	16488878	Hirate, Y., and Okamoto, H.	Canopy1, a Novel Regulator of FGF Signaling around the Midbrain-Hindbrain Boundary in Zebrafish	Current biology : CB	2006	16(4)	421-427	
ZDB-PUB-060315-18	16527746	Hogan, B.M., Layton, J.E., Pyati, U.J., Nutt, S.L., Hayman, J.W., Varma, S., Heath, J.K., Kimelman, D., and Lieschke, G.J.	Specification of the Primitive Myeloid Precursor Pool Requires Signaling through Alk8 in Zebrafish	Current biology : CB	2006	16(5)	506-511	
ZDB-PUB-060412-5	16581508	Woods, I.G., Lyons, D.A., Voas, M.G., Pogoda, H.M., and Talbot, W.S.	nsf Is Essential for Organization of Myelinated Axons in Zebrafish	Current biology : CB	2006	16(7)	636-648	
ZDB-PUB-060517-17	15786591	Trinh, L.A., Yelon, D., and Stainier, D.Y.	Hand2 regulates epithelial formation during myocardial diferentiation	Current biology : CB	2005	15(5)	441-446	
ZDB-PUB-060531-9	16713951	Omori, Y., and Malicki, J.	oko meduzy and Related crumbs Genes Are Determinants of Apical Cell Features in the Vertebrate Embryo	Current biology : CB	2006	16(10)	945-957	
ZDB-PUB-060623-8	16782017	Kuchler, A.M., Gjini, E., Peterson-Maduro, J., Cancilla, B., Wolburg, H., and Schulte-Merker, S.	Development of the zebrafish lymphatic system requires vegfc signaling	Current biology : CB	2006	16(12)	1244-1248	
ZDB-PUB-061031-14	16824925	Hong, C.C., Peterson, Q.P., Hong, J.Y., and Peterson, R.T.	Artery/vein specification is governed by opposing phosphatidylinositol-3 kinase and MAP kinase/ERK signaling	Current biology : CB	2006	16(13)	1366-1372	
ZDB-PUB-061108-19	17084698	Mishima, Y., Giraldez, A.J., Takeda, Y., Fujiwara, T., Sakamoto, H., Schier, A.F., and Inoue, K.	Differential Regulation of Germline mRNAs in Soma and Germ Cells by Zebrafish miR-430	Current biology : CB	2006	16(21)	2135-2142	
ZDB-PUB-070711-18	17600713	Minina, S., Reichman-Fried, M., and Raz, E.	Control of receptor internalization, signaling level, and precise arrival at the target in guided cell migration	Current biology : CB	2007	17(13)	1164-1172	
ZDB-PUB-071009-11	17919909	Sheets, L., Ransom, D.G., Mellgren, E.M., Johnson, S.L., and Schnapp, B.J.	Zebrafish Melanophilin Facilitates Melanosome Dispersion by Regulating Dynein	Current biology : CB	2007	17(20)	1721-1734	
ZDB-PUB-071210-19	18054764	Hammer, J.A., and Wu, X.S.	Organelle Motility: Running on Unleadened	Current biology : CB	2007	17(23)	1017-R1019	
ZDB-PUB-080309-18	18291651	Pézeron, G., Mourrain, P., Courty, S., Ghislain, J., Becker, T.S., Rosa, F.M., and David, N.B.	Live analysis of endodermal layer formation identifies random walk as a novel gastrulation movement	Current biology : CB	2008	18(4)	276-281	
ZDB-PUB-081029-18	18951027	Sakaguchi, T.F., Sadler, K.C., Crosnier, C., and Stainier, D.Y.	Endothelial Signals Modulate Hepatocyte Apicobasal Polarization in Zebrafish	Current biology : CB	2008	18(20)	1565-1571	
ZDB-PUB-090407-17	19345098	Abraham, S., Yeo, M., Montero-Balaguer, M., Paterson, H., Dejana, E., Marshall, C.J., and Mavria, G.	VE-Cadherin-Mediated Cell-Cell Interaction Suppresses Sprouting via Signaling to MLC2 Phosphorylation	Current biology : CB	2009	19(8)	668-674	
ZDB-PUB-090526-31	19464178	Aanstad, P., Santos, N., Corbit, K.C., Scherz, P.J., Trinh, L.A., Salvenmoser, W., Huisken, J., Reiter, J.F., and Stainier, D.Y.	The Extracellular Domain of Smoothened Regulates Ciliary Localization and Is Required for High-Level Hh Signaling	Current biology : CB	2009	19(12)	1034-1039	
ZDB-PUB-090914-35	19733072	Rohner, N., Bercsényi, M., Orbán, L., Kolanczyk, M.E., Linke, D., Brand, M., Nüsslein-Volhard, C., and Harris, M.P.	Duplication of fgfr1 Permits Fgf Signaling to Serve as a Target for Selection during Domestication	Current biology : CB	2009	19(19)	1642-1647	
ZDB-PUB-961014-1084	none	Strähle, U. and Ingham, P.W.	Flight of fancy or a major new school?	Current biology : CB	1992	2	135-138	
ZDB-PUB-980715-1	9651684	Peyriéras, N., Strähle, U., and Rosa, F.	Conversion of zebrafish blastomeres to an endodermal fate by TGF-ß-related signaling	Current biology : CB	1998	8	783-786	
ZDB-PUB-990830-4	10395542	Sheldahl, L.C., Park, M., Malbon, C.C., and Moon, R.T.	Protein kinase C is differentially stimulated by wnt and frizzled homologs in aG-protein-dependent manner	Current biology : CB	1999	9(13)	695-698	
ZDB-PUB-991102-6	10531029	Alexander, J. and Stainier, D.Y.	A molecular pathway leading to endoderm formation in zebrafish	Current biology : CB	1999	9(20)	1147-1157	
ZDB-PUB-091215-44	19962310	O'Brien, G.S., Martin, S.M., Söllner, C., Wright, G.J., Becker, C.G., Portera-Cailliau, C., and Sagasti, A.	Developmentally Regulated Impediments to Skin Reinnervation by Injured Peripheral Sensory Axon Terminals	Current biology : CB	2009	19(24)	2086-2090	
ZDB-PUB-100119-17	20079641	Arboleda-Estudillo, Y., Krieg, M., Stühmer, J., Licata, N.A., Muller, D.J., and Heisenberg, C.P.	Movement Directionality in Collective Migration of Germ Layer Progenitors	Current biology : CB	2010	20(2)	161-169	
ZDB-PUB-100223-18	20153194	Burgess, H.A., Schoch, H., and Granato, M.	Distinct Retinal Pathways Drive Spatial Orientation Behaviors in Zebrafish Navigation	Current biology : CB	2010	20(4)	381-386	
ZDB-PUB-010912-10	11532397	Huelsken, J. and Birchmeier, W.	New aspects of Wnt signaling pathways in higher vertebrates	Curr. Opin. Genet. Dev.	2001	11(5)	547-553	
ZDB-PUB-050818-9	16099643	Miska, E.A.	How microRNAs control cell division, differentiation and death	Curr. Opin. Genet. Dev.	2005	15(5)	563-568	
ZDB-PUB-041122-1	15544488	Chen, E., and Ekker, S.C.	Zebrafish as a genomics research model	Curr. Pharm. Biotechnol.	2004	5(5)	409-413	
ZDB-PUB-030103-10	none	Pandian, T.J. and Marian, L.A.	Problems and prospects of transgenic fish production	Curr. Sci. Bangalore	1994	66(9)	635-649	
ZDB-PUB-030103-11	none	Roy, S.	Development of the zebrafish nervous system: Mechanisms of cellfate specification and axonal pathfinding in the central nervous system and periphery	Curr. Sci. Bangalore	1994	66(9)	629-633	
ZDB-PUB-050215-2	15707501	Wilkinson, T.N., Speed, T.P., Tregear, G.W., and Bathgate, R.A.	Evolution of the relaxin-like peptide family	BMC Evolutionary Biology	2005	5(1)	14	
ZDB-PUB-061020-13	17014738	Hashiguchi, Y., and Nishida, M.	Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes	BMC Evolutionary Biology	2006	6	76	
ZDB-PUB-070614-29	17475008	Li, C., and Wu, Q.	Adaptive evolution of multiple-variable exons and structural diversity of drug-metabolizing enzymes	BMC Evolutionary Biology	2007	7(1)	69	
ZDB-PUB-080414-3	18384689	Ekins, S., Reschly, E.J., Hagey, L.R., and Krasowski, M.D.	Evolution of pharmacologic specificity in the pregnane X receptor	BMC Evolutionary Biology	2008	8(1)	103	
ZDB-PUB-080622-23	18565225	Desai, S., Heffelfinger, A.K., Orcutt, T.M., Litman, G.W., and Yoder, J.A.	The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains	BMC Evolutionary Biology	2008	8	177	
ZDB-PUB-080716-1	18541024	Wotton, K.R., Weierud, F.K., Dietrich, S., and Lewis, K.E.	Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates	BMC Evolutionary Biology	2008	8	171	
ZDB-PUB-080924-1	18803835	Sundstrom, G., Larsson, T.A., and Larhammar, D.	Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters	BMC Evolutionary Biology	2008	8(1)	254	
ZDB-PUB-090112-3	19123940	Finn, R.N., Kolarevic, J., Kongshaug, H., and Nilsen, F.	Evolution and differential expression of a vertebrate vitellogenin gene cluster	BMC Evolutionary Biology	2009	9	2	
ZDB-PUB-090727-7	19619322	Hillwig, M.S., Rizhsky, L., Wang, Y., Umanskaya, A., Essner, J.J., and Macintosh, G.C.	Zebrafish RNase T2 genes and the evolution of secretory ribonucleases in animals	BMC Evolutionary Biology	2009	9	170	
ZDB-PUB-090914-22	19725974	Karanth, S., Lall, S.P., Denovan-Wright, E.M., and Wright, J.M.	Differential transcriptional modulation of duplicated fatty acid-binding protein genes by dietary fatty acids in zebrafish (Danio rerio): evidence for subfunctionalization and neofunctionalization of duplicated genes	BMC Evolutionary Biology	2009	9	219	
ZDB-PUB-091101-7	19852809	Desvignes, T., Pontarotti, P., Fauvel, C., and Bobe, J.	Nme protein family evolutionary history, a vertebrate perspective	BMC Evolutionary Biology	2009	9	256	
ZDB-PUB-091120-2	17900370	Kawahara, T., and Lambeth, J.D.	Molecular evolution of Phox-related regulatory subunits for NADPH oxidase enzymes	BMC Evolutionary Biology	2007	7	178	
ZDB-PUB-091130-2	18811928	Harduin-Lepers, A., Petit, D., Mollicone, R., Delannoy, P., Petit, J.M., and Oriol, R.	Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes	BMC Evolutionary Biology	2008	8	258	
ZDB-PUB-100112-20	20053275	Albertson, R.C., Yan, Y.L., Titus, T.A., Pisano, E., Vacchi, M., Yelick, P.C., Detrich, H.W. 3rd, and Postlethwait, J.H.	Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes	BMC Evolutionary Biology	2010	10	4	
ZDB-PUB-100223-9	20149227	Tingaud-Sequeira, A., Calusinska, M., Finn, R.N., Chauvigne, F., Lozano, J., and Cerda, J.	The zebrafish genome encodes the largest vertebrate repertoire of functional aquaporins with dual paralogy and substrate specificities similar to mammals	BMC Evolutionary Biology	2010	10	38	
ZDB-PUB-070427-22	17439641	Huxley-Jones, J., Clarke, T.K., Beck, C., Toubaris, G., Robertson, D.L., and Boot-Handford, R.P.	The evolution of the vertebrate metzincins; insights from Ciona intestinalis and Danio rerio	BMC Evolutionary Biology	2007	7(1)	63	
ZDB-PUB-070726-26	17640376	Liongue, C., and Ward, A.C.	Evolution of Class I cytokine receptors	BMC Evolutionary Biology	2007	7(1)	120	
ZDB-PUB-070820-20	17601340	Pan, F., Malmberg, R.L., and Momany, M.	Analysis of septins across kingdoms reveals orthology and new motifs	BMC Evolutionary Biology	2007	7(1)	103	
ZDB-PUB-080227-10	18254971	Laing, K.J., Purcell, M.K., Winton, J.R., and Hansen, J.D.	A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish	BMC Evolutionary Biology	2008	8	42	
ZDB-PUB-080825-13	18673550	Sardiello, M., Cairo, S., Fontanella, B., Ballabio, A., and Meroni, G.	Genomic analysis of the TRIM family reveals two groups of genes with distinct evolutionary properties	BMC Evolutionary Biology	2008	8	225	
ZDB-PUB-090105-9	19094205	Douard, V., Brunet, F., Boussau, B., Ahrens, I., Vlaeminck-Guillem, V., Haendler, B., Laudet, V., and Guiguen, Y.	The fate of the duplicated androgen receptor in fishes: a late neofunctionalization event?	BMC Evolutionary Biology	2008	8	336	
ZDB-PUB-090508-2	18664266	Alvarez, C.E.	On the origins of arrestin and rhodopsin	BMC Evolutionary Biology	2008	8	222	
ZDB-PUB-090616-26	19500364	Sato, Y., Hashiguchi, Y., and Nishida, M.	Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication	BMC Evolutionary Biology	2009	9	127	
ZDB-PUB-091120-1	17612411	Kawahara, T., Quinn, M.T., and Lambeth, J.D.	Molecular evolution of the reactive oxygen-generating NADPH oxidase (Nox/Duox) family of enzymes	BMC Evolutionary Biology	2007	7	109	
ZDB-PUB-091215-23	19951429	Feiner, N., Begemann, G., Renz, A.J., Meyer, A., and Kuraku, S.	The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes	BMC Evolutionary Biology	2009	9	277	
ZDB-PUB-100202-6	20105326	Laisney, J.A., Braasch, I., Walter, R.B., Meierjohann, S., and Schartl, M.	Lineage-specific co-evolution of the Egf receptor/ligand signaling system	BMC Evolutionary Biology	2010	\ 	\ 	
ZDB-PUB-050225-7	15725362	Copeland, C.S., Mann, V.H., Morales, M.E., Kalinna, B.H., and Brindley, P.J.	The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements	BMC Evolutionary Biology	2005	5(1)	20	
ZDB-PUB-050714-11	15207008	Still, I.H., Vettaikkorumakankauv, A.K., DiMatteo, A., and Liang, P.	Structure-function evolution of the Transforming acidic coiled coil genes revealed by analysis of phylogenetically diverse organisms	BMC Evolutionary Biology	2004	4(1)	1635-1648	
ZDB-PUB-060424-1	16620379	McKenzie, P., Chadalavada, S.C., Bohrer, J., and Adams, J.C.	Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation	BMC Evolutionary Biology	2006	6(1)	33	
ZDB-PUB-070409-27	17394664	Yu, W.P., Yew, K., Rajasegaran, V., and Venkatesh, B.	Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts	BMC Evolutionary Biology	2007	7(1)	49	
ZDB-PUB-070614-30	17498288	Braasch, I., Schartl, M., and Volff, J.N.	Evolution of pigment synthesis pathways by gene and genome duplication in fish	BMC Evolutionary Biology	2007	7(1)	74	
ZDB-PUB-070726-5	17623065	Chopra, S.S., Watanabe, H., Zhong, T.P., and Roden, D.M.	Molecular cloning and analysis of zebrafish voltage-gated sodium channel beta subunit genes: Implications for the evolution of electrical signaling in vertebrates	BMC Evolutionary Biology	2007	7(1)	113	
ZDB-PUB-071118-47	17997857	Reschly, E.J., Bainy, A.C., Mattos, J.J., Hagey, L.R., Bahary, N., Mada, S.R., Ou, J., Venkataramanan, R., and Krasowski, M.D.	Functional evolution of the vitamin D and pregnane X receptors	BMC Evolutionary Biology	2007	7	222	
ZDB-PUB-080228-9	18275604	Kraemer, A.M., Saraiva, L.R., and Korsching, S.I.	Structural and functional diversification in the teleost S100 family of calcium-binding proteins	BMC Evolutionary Biology	2008	8	48	
ZDB-PUB-080908-1	17603878	Haitina, T., Klovins, J., Takahashi, A., Löwgren, M., Ringholm, A., Enberg, J., Kawauchi, H., Larson, E.T., Fredriksson, R., and Schiöth, H.B.	Functional characterization of two melanocortin (MC) receptors in lamprey showing orthology to the MC1 and MC4 receptor subtypes	BMC Evolutionary Biology	2007	7	101	
ZDB-PUB-090605-1	15476560	Brown, J.R., Koretke, K.K., Birkeland, M.L., Sanseau, P., and Patrick, D.R.	Evolutionary relationships of Aurora kinases: implications for model organism studies and the development of anti-cancer drugs	BMC Evolutionary Biology	2004	4(1)	39	
ZDB-PUB-091130-3	19695090	Gillis, W.Q., St John, J., Bowerman, B., and Schneider, S.Q.	Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family	BMC Evolutionary Biology	2009	9	207	
ZDB-PUB-091221-26	20015397	Good-Avila, S.V., Yegorov, S., Harron, S., Bogerd, J., Glen, P., Ozon, J., and Wilson, B.C.	Relaxin gene family in teleosts: phylogeny, syntenic mapping, selective constraint, and expression analysis	BMC Evolutionary Biology	2009	9	293	
ZDB-PUB-991102-2	10536231	Kazimi, N. and Cahill, G.M.	Development of a circadian melatonin rhythm in embryonic zebrafish	Dev. Brain Res.	1999	117(1)	47-52	
ZDB-PUB-961014-973	7813042	Sandell, J.H., Martin, S.C., and Heinrich, G.	The development of neurotrophin receptor Trk immunoreactivity in the retina of the zebrafish (Brachydanio rerio)	Dev. Brain Res.	1994	81	192-200	
ZDB-PUB-000309-17	10675769	Pinelli, C., D'Aniello, B., Sordino, P., Mayer, D.L., Fiorentino, M., and Rastogi, R.K.	Comparative immunocytochemical study of FMRFamide neuronal system in the brain of Danio rerio and Acipenser ruthenus during development	Dev. Brain Res.	2000	119(2)	195-208	
ZDB-PUB-040216-19	14757516	Roy, N.M., and Sagerström, C.G.	An early Fgf signal required for gene expression in the zebrafish hindbrain primordium	Dev. Brain Res.	2004	148(1)	27-42	
ZDB-PUB-041008-1	15464224	Danilova, N., Visel, A., Willett, C.E., and Steiner, L.A.	Expression of the winged helix/forkhead gene, foxn4, during zebrafish development	Dev. Brain Res.	2004	153(1)	115-119	
ZDB-PUB-980910-1	9729330	Passini, M.A., Raymond, P.A., Schechter, N.	Vsx-2, a gene encoding a paired-type homeodomain, is expressed in the retina, hindbrain, and spinal cord during goldfish embryogenesis	Dev. Brain Res.	1998	109	129-135	
ZDB-PUB-980105-6	9397538	Santacruz, H., Vriz, S., and Angelier, N.	Molecular characterization of a heat shock cognate cDNA of zebrafish, hsc70, and developmental expression of the corresponding transcripts	Dev. Gen.	1997	21(3)	223-233	
ZDB-PUB-990507-3	10223708	Nagaso, H., Suzuki, A., Tada, M., and Ueno, N.	Dual specificity of activin type II receptor ActRIIb in dorso-ventral patterning during zebrafish embryogenesis	Dev. Growth Diff.	1999	41(2)	119-133	
ZDB-PUB-000201-25	10646794	Tamura, K., Yonei-Tamura, S., and Belmonte, J.C.	Molecular basis of left-right asymmetry	Dev. Growth Diff.	1999	41(6)	645-656	
ZDB-PUB-961014-1241		Wolenski, J.S. and Hart, N.H.	Sperm incorporation independent of fertilization cone formation in the danio egg	Dev. Growth Diff.	1988	30	619-628	
ZDB-PUB-961014-536		Katow, H.	Obstruction of blastodisk formation by cytochalasin B in the zebrafish, Brachydanio rerio	Dev. Growth Diff.	1983	25	477-484	
ZDB-PUB-981215-11	9865967	de Graaf, M., Jongejan-Zivkovic, D., and Joore, J.	Hormone-inducible expression of secreted factors in zebrafish embryos	Dev. Growth Diff.	1998	40	577-582	
ZDB-PUB-000322-1	10831041	Leung, C.F., Webb, S.E., and Miller, A.L.	On the mechanism of ooplasmic segregation in single-cell zebrafish embryos	Dev. Growth Diff.	2000	42(1)	29-40	
ZDB-PUB-961014-1259	none	Willemse, M.T.M. and Denuce, J.M.	Hatching glands in the teleosts, Brachydanio rerio, Danio malabaricus, Moenkhausia oligolepis and Barbus schuberti	Dev. Growth Diff.	1973	15	169-177	
ZDB-PUB-961014-24		Al-Adhami, M.A. and Kunz, Y.W.	Ontogenesis of haematopoietic sites in Brachydanio rerio (Hamilton-Buchanan) (Teleostei)	Dev. Growth Diff.	1977	19	171-179	
ZDB-PUB-970812-12	9108332	Inohaya, K., Yasumasu, S., Araki, K., Naruse, K., Yamazaki, K., Yasumasu, I., Iuchi, I., and Yamagami, K.	Species-dependent migration of fish hatching gland cells that express astacin-like proteases in common [corrected]	Dev. Growth Diff.	1997	39(2)	191-197	
ZDB-PUB-971111-3	9639359	Leung, C.F., S.E. Webb, and A.L. Miller	Calcium transients accompany ooplasmic segregation in zebrafish embryos	Dev. Growth Diff.	1998	40	313-326	
ZDB-PUB-980624-9	9639354	Yamaha, E., Mizuno, T., Hasebe, Y., Takeda, H., Yamazaki, F.	Dorsal specification in blastoderm at the blastula stage in goldfish, Carassius auratus	Dev. Growth Diff.	1998	40	267-275	
ZDB-PUB-990507-2	10223709	Shinya, M., Furutani-Seiki, M., Kuroiwa, A., and Takeda, H.	Mosaic analysis with oep mutant reveals a repressive interaction between floor-plate and non-floor-plate mutant cells in the zebrafish neural tube	Dev. Growth Diff.	1999	41(2)	135-142	
ZDB-PUB-971216-1	9413674	Easter, S.S., Jr. and G.N. Nicola	The development of eye movements in the zebrafish (Danio rerio)	Dev. Psychobiol.	1997	31(4)	267-276	
ZDB-PUB-961014-742	7054017	McCann, L.I. and Carlson, C.C.	Effect of cross-rearing on species identification in zebra fish and pearl danios	Dev. Psychobiol.	1982	15(1)	71-74	
ZDB-PUB-961014-590	4812270	Kimmel, C.B., Patterson, J., and Kimmel, R.J.	The development and behavioral characteristics of the startle response in the zebra fish	Dev. Psychobiol.	1974	7(1)	47-60	
ZDB-PUB-961014-743	4822848	McCann, L.I. and Matthews, J.J.	The effects of lifelong isolation on species identification in zebra fish (Brachydanio rerio)	Dev. Psychobiol.	1974	7(2)	159-163	
ZDB-PUB-000201-24	10648131	Wiegand, C., Pflugmacher, S., Giese, M., Frank, H., and Steinberg, C.	Uptake, toxicity, and effects on detoxication enzymes of atrazine and trifluoroacetate in embryos of zebrafish	Ecotoxicol. Environ. Saf.	2000	45(2)	122-131	
ZDB-PUB-010220-3	11161695	Roex, E.W., Giovannangelo, M., and van Gestel, C.A.	Reproductive impairment in the zebrafish, Danio rerio, upon chronic exposure to 1,2,3-trichlorobenzene	Ecotoxicol. Environ. Saf.	2001	48(2)	196-201	
ZDB-PUB-010709-1	11440472	Wiegand, C., Krause, E., Steinberg, C., and Pflugmacher, S.	Toxicokinetics of atrazine in embryos of the zebrafish (Danio rerio)	Ecotoxicol. Environ. Saf.	2001	49(3)	199-205	
ZDB-PUB-040421-9	15087169	Zhiyi, R., and Haowen, Y.	A method for genotoxicity detection using random amplified polymorphism DNA with Danio rerio	Ecotoxicol. Environ. Saf.	2004	58(1)	96-103	
ZDB-PUB-060517-5	16677909	Fraysse, B., Mons, R., and Garric, J.	Development of a zebrafish 4-day embryo-larval bioassay to assess toxicity of chemicals	Ecotoxicol. Environ. Saf.	2006	63(2)	253-267	
ZDB-PUB-061221-17	7525213	Iannelli, M.A., Marcucci, I., and Vittozzi, L.	Xenobiotic-metabolizing enzyme systems in test fish. V. Comparative studies of liver microsomal glucuronyltransferases	Ecotoxicol. Environ. Saf.	1994	28(2)	172-180	
ZDB-PUB-080227-12	18258299	Kling, P., Norman, A., Andersson, P.L., Norrgren, L., and Förlin, L.	Gender-specific proteomic responses in zebrafish liver following exposure to a selected mixture of brominated flame retardants(,)	Ecotoxicol. Environ. Saf.	2008	71(2)	319-327	
ZDB-PUB-090601-15	19477011	Kienle, C., Köhler, H.R., and Gerhardt, A.	Behavioural and developmental toxicity of chlorpyrifos and nickel chloride to zebrafish (Danio rerio) embryos and larvae	Ecotoxicol. Environ. Saf.	2009	72(6)	1740-1747	
ZDB-PUB-961014-126	1694756	Braunbeck, T., Gorge, G., Storch, V., and Nagel, R.	Hepatic steatosis in zebrafish (Brachydanio rerio) induced by long-term exposure to gamma-hexachlorocyclohexane	Ecotoxicol. Environ. Saf.	1990	19(3)	355-374	
ZDB-PUB-961014-161		Canton, J.H. and Slooff, W.	Toxicity and accumulation studies of cadmium(24) with freshwater organisms of different trophic levels	Ecotoxicol. Environ. Saf.	1982	6	113-128	
ZDB-PUB-961014-202	4085384	Dave, G.	The influence of pH on the toxicity of aluminum, cadmium, and iron to eggs and larvae of the zebrafish, Brachydanio rerio	Ecotoxicol. Environ. Saf.	1985	10	253-267	
ZDB-PUB-961014-232	3234293	Donnarumma, L., DeAngelis, G., Gramenzi, F., and Vittozzi, L.	Xenobiotic metabolizing enzyme systems in test fish. III. Comparative studies of liver cytosolic glutathione S-transferases	Ecotoxicol. Environ. Saf.	1988	16(2)	180-186	
ZDB-PUB-961014-292	7539369	Ensenbach, U. and Nagel, R.	Toxicity of complex chemical mixtures: acute and long-term effects on different life states of zebrafish (Brachydanio rerio)	Ecotoxicol. Environ. Saf.	1995	30	151-157	
ZDB-PUB-961014-317	7523072	Fox, K., Zauke, G.P., and Butte, W.	Kinetics of bioconcentration and clearance of 28 polychlorinated biphenyl congeners in zebrafish (Brachydanio rerio)	Ecotoxicol. Environ. Saf.	1994	28	99-109	
ZDB-PUB-961014-333	3830019	Funari, E., Zoppini, A., Verdina, A., DeAngelis, G., and Vittozzi, L.	Xenobiotic-metabolizing enzyme systems in test fish. I. Comparative studies of liver microsomal monooxygenases	Ecotoxicol. Environ. Saf.	1987	13(1)	24-31	
ZDB-PUB-961014-822	2226246	Neilson, A.H., Allard, A.S., Fischer, S., Malmberg, M., and Viktor, T.	Incorporation of a subacute test with zebra fish into a hierarchical system for evaluating the effect of toxicants in the aquatic environment	Ecotoxicol. Environ. Saf.	1990	20(1)	82-97	
ZDB-PUB-961104-4	8565871	Riberyre, F., Amiard-Triquet, C., Boudou, A., and Amiard, J.C.	Experimental study of interactions between five trace elements--Cu, Ag, Se, Zn, and Hg--toward their bioaccumulation by fish (Brachydanio rerio) from the direct route	Ecotoxicol. Environ. Saf.	1995	32	1-11	
ZDB-PUB-991103-10	10499986	Strmac, M. and Braunbeck, T.	Effects of triphenyltin acetate on survival, hatching success, and liver ultrastructure of early life stages of zebrafish (Danio rerio)	Ecotoxicol. Environ. Saf.	1999	44(1)	25-39	
ZDB-PUB-091120-35	19896709	Villeneuve, D.L., Garcia-Reyero, N., Martinovic, D., Mueller, N.D., Cavallin, J.E., Durhan, E.J., Makynen, E.A., Jensen, K.M., Kahl, M.D., Blake, L.S., Perkins, E.J., and Ankley, G.T.	II: Effects of a dopamine receptor antagonist on fathead minnow dominance behavior and ovarian gene expression in the fathead minnow and zebrafish	Ecotoxicol. Environ. Saf.	2009	\ 	\ 	
ZDB-PUB-010604-3	11386733	Schnurstein, A. and Braunbeck, T.	Tail moment versus tail length-application of an in vitro version of the comet assay in biomonitoring for genotoxicity in native surface waters using primary hepatocytes and gill cells from zebrafish (Danio rerio)	Ecotoxicol. Environ. Saf.	2001	49(2)	187-196	
ZDB-PUB-030211-12	12568463	Todd, N.E. and van Leeuwen, M.	Effects of Sevin (carbaryl insecticide) on early life stages of zebrafish (Danio rerio)	Ecotoxicol. Environ. Saf.	2002	53(2)	267-272	
ZDB-PUB-030326-2	12651186	Segner, H., Caroll, K., Fenske, M., Janssen, C.R., Maack, G., Pascoe, D., Schaefers, C., Vandenbergh, G.F., Watts, M., and Wenzel, A.	Identification of endocrine-disrupting effects in aquatic vertebrates and invertebrates: report from the European IDEA project	Ecotoxicol. Environ. Saf.	2003	54(3)	302-314	
ZDB-PUB-040526-8	15157575	Njiwa, J.R., Muller, P., and Klein, R.	Binary mixture of DDT and Arochlor1254: effects on sperm release by Danio rerio	Ecotoxicol. Environ. Saf.	2004	58(2)	211-219	
ZDB-PUB-060501-8	16638617	Cargouet, M., Perdiz, D., and Levi, Y.	Evaluation of the estrogenic potential of river and treated waters in the Paris area (France) using in vivo and in vitro assays	Ecotoxicol. Environ. Saf.	2006	67(1)	149-156	
ZDB-PUB-081105-2	18973942	Pretti, C., Chiappe, C., Baldetti, I., Brunini, S., Monni, G., and Intorre, L.	Acute toxicity of ionic liquids for three freshwater organisms: Pseudokirchneriella subcapitata, Daphnia magna and Danio rerio	Ecotoxicol. Environ. Saf.	2009	72(4)	1170-1176	
ZDB-PUB-961014-1155	2226242	VanLeeuwen, C.J., Grootelaar, E.M.M., and Niebeek, G.	Fish embryos as teratogenicity screens: a comparison of embryotoxicity between fish and birds	Ecotoxicol. Environ. Saf.	1990	20(1)	42-52	
ZDB-PUB-961014-818	7540537	Naudin, S., Garric, J., Vindimian, E., Bray, M., Migeon, B., Vollat, B., and Lenon, G.	Influence of the sample preservation mode to assess the chronic toxicity of an industrial effluent	Ecotoxicol. Environ. Saf.	1995	30	54-62	
ZDB-PUB-961014-932	1844397	Remberger, M., Hynning, P.A., and Neilson, A.H.	Chlorinated Benzo-1 2-Quinones: an example of chemical transformation of toxicants during tests with aquatic organisms	Ecotoxicol. Environ. Saf.	1991	22(3)	320-336	
ZDB-PUB-961014-999	7540538	Schmitz, A. and Nagel, R.	Influence of 3,4-dichloroaniline (3,4-DCA) on benthic invertebrates in indoor experimental streams	Ecotoxicol. Environ. Saf.	1995	30	63-71	
ZDB-PUB-091215-13	19942289	Cambier, S., Gonzalez, P., Durrieu, G., and Bourdineaud, J.P.	Cadmium-induced genotoxicity in zebrafish at environmentally relevant doses	Ecotoxicol. Environ. Saf.	2010	73(3)	312-319	
ZDB-PUB-100119-10	20074802	Chen, T.H., Cheng, Y.M., Cheng, J.O., Chou, C.T., Hsiao, Y.C., and Ko, F.C.	Growth and transcriptional effect of dietary 2,2',4,4'-tetrabromodiphenyl ether (PBDE-47) exposure in developing zebrafish (Danio rerio)	Ecotoxicol. Environ. Saf.	2010	73(3)	377-383	
ZDB-PUB-030326-3	12651187	Segner, H., Navas, J.M., Schaefers, C., and Wenzel, A.	Potencies of estrogenic compounds in in vitro screening assays and in life cycle tests with zebrafish in vivo	Ecotoxicol. Environ. Saf.	2003	54(3)	315-322	
ZDB-PUB-030826-9	12927559	van den Belt, K., Verheyen, R., and Witters, H.	Comparison of vitellogenin responses in zebrafish and rainbow trout following exposure to environmental estrogens	Ecotoxicol. Environ. Saf.	2003	56(2)	271-281	
ZDB-PUB-040421-8	15087170	Jiangning, C., Hongxia, Y., Ying, L., Wei, J., Jie, J., Junfeng, Z., and Zichun, H.	Ecotoxicological evaluation of 4-aminobiphenyl using a test battery	Ecotoxicol. Environ. Saf.	2004	58(1)	104-109	
ZDB-PUB-050831-10	16125774	Hallare, A., Nagel, K., Kohler, H.R., and Triebskorn, R.	Comparative embryotoxicity and proteotoxicity of three carrier solvents to zebrafish (Danio rerio) embryos	Ecotoxicol. Environ. Saf.	2006	63(3)	378-388	
ZDB-PUB-060105-13	16376426	Matz, C.J., Treble, R.G., and Krone, P.H.	Accumulation and elimination of cadmium in larval stage zebrafish following acute exposure	Ecotoxicol. Environ. Saf.	2007	66(1)	44-48	
ZDB-PUB-080327-13	18359083	Duan, Z., Zhu, L., Zhu, L., Kun, Y., and Zhu, X.	Individual and joint toxic effects of pentachlorophenol and bisphenol A on the development of zebrafish (Danio rerio) embryo	Ecotoxicol. Environ. Saf.	2008	71(3)	774-780	
ZDB-PUB-081105-3	18973944	Na, Y.R., Seok, S.H., Baek, M.W., Lee, H.Y., Kim, D.J., Park, S.H., Lee, H.K., and Park, J.H.	Protective effects of vitamin E against 3,32,4,42,5-pentachlorobiphenyl (PCB126) induced toxicity in zebrafish embryos	Ecotoxicol. Environ. Saf.	2009	72(3)	714-719	
ZDB-PUB-090601-14	19477007	Kling, P., and Förlin, L.	Proteomic studies in zebrafish liver cells exposed to the brominated flame retardants HBCD and TBBPA	Ecotoxicol. Environ. Saf.	2009	72(7)	1985-1993	
ZDB-PUB-090807-6	19647873	Ma, Y., Chen, L., Lu, X., Chu, H., Xu, C., and Liu, W.	Enantioselectivity in aquatic toxicity of synthetic pyrethroid insecticide fenvalerate	Ecotoxicol. Environ. Saf.	2009	72(7)	1913-1918	
ZDB-PUB-961014-158	7117189	Calamari, D., Galassi, S., and Setti, F.	Evaluating the hazard of organic substances on aquatic life: the paradichlorobenzene example	Ecotoxicol. Environ. Saf.	1982	6(4)	369-378	
ZDB-PUB-961014-338	3024952	Gard-Terech, A. and Palla, J.C.	Comparative kinetics study of the evolution of freshwater aquatic toxicity and biodegradability of linear and branched alkylbenzene sulfonates	Ecotoxicol. Environ. Saf.	1986	12(2)	127-140	
ZDB-PUB-961014-365	1708710	Gorge, G. and Nagel, R.	Toxicity of lindane, atrazine, and deltamethrin to early life stages of zebrafish (Brachydanio rerio)	Ecotoxicol. Environ. Saf.	1990	20	246-255	
ZDB-PUB-961014-517	4006832	Jouany, J.M., Truhaut, R., Vasseur, P., Klein, D., Ferard, J.F., and Deschamps, P.	An example of interaction between environmental pollutants: modification of thiram toxicity to freshwater organisms by nitrites or nitrates in relation to nitrosamine synthesis	Ecotoxicol. Environ. Saf.	1985	9	327-338	
ZDB-PUB-961014-641	2434299	Kumar, K. and Ansari, B.A.	Malathion toxicity: effect on the liver of the fish Brachydanio rerio (Cyprinidae)	Ecotoxicol. Environ. Saf.	1986	12(3)	199-205	
ZDB-PUB-961014-674	4006828	Landner, L., Neilson, A.H., Soerensen, L., Tarnholm, A., and Viktor, T.	Short-term test for predicting the potential of xenobiotics to impair reproductive success in fish	Ecotoxicol. Environ. Saf.	1985	9(3)	282-293	
ZDB-PUB-961014-816	2065628	Nagel, R., Bresch, H., Caspers, N., Hansen, P.D., Markert, M., Munk-, R., Scholz, N., and ter-Hofte, B.B.	Effect of 3,4-dichloroaniline on the early life stages of the zebrafish (Brachydanio rerio): results of a comparative laboratory study	Ecotoxicol. Environ. Saf.	1991	21	157-164	
ZDB-PUB-961101-16	8812178	Rougier, F., Menudier, A., Bosgiraud, C., and Nicolas, J.A.	Copper and zinc exposure of zebrafish, Brachydanio rerio (Hamilton-Buchanan): effects in experimental listeria infection	Ecotoxicol. Environ. Saf.	1996	34(2)	134-140	
ZDB-PUB-091120-36	19896710	Sancho, E., Villarroel, M.J., Fernández, C., Andreu, E., and Ferrando, M.D.	Short-term exposure to sublethal tebuconazole induces physiological impairment in male zebrafish (Danio rerio)	Ecotoxicol. Environ. Saf.	2010	73(3)	370-376	
ZDB-PUB-961014-1042		Slynko, Y.V.	Influence of Tordon-22IK upon morphogenesis and genofond of Brachydanio rerio (Cyprinidae). Embryotoxic and teratongenic effects	Ekologiya	1987	1987	55-59	
ZDB-PUB-010219-7	11174844	Salomon, D.S., Bianco, C., Ebert, A.D., Khan, N.I., De Santis, M., Normanno, N., Wechselberger, C., Seno, M., Williams, K., Sanicola, M., Foley, S., Gullick, W.J., and Persico, G.	The EGF-CFC family: novel epidermal growth factor-related proteins in development and cancer	Endocr. Relat. Cancer	2000	7(4)	199-226	
ZDB-PUB-990824-18	10451227	Bentley, C.A., Zidehsarai, M.P., Grindley, J.C., Parlow, A.F., Barth-Hall, S., and Roberts, V.J.	Pax6 is implicated in murine pituitary endocrine function	Endocrine	1999	10(2)	171-177	
ZDB-PUB-040109-7	14709799	Song, Y., Golling, G., Thacker, T.L., and Cone, R.D.	Agouti-related protein (AGRP) is conserved and regulated by metabolic state in the zebrafish, Danio rerio	Endocrine	2003	22(3)	257-266	
ZDB-PUB-990607-16	none	Oberemm, A., Becker, J., Codd, G., and Steinberg, C.	Effects of cyanobacterial toxins and aqueous crude extracts on the development of fish and amphibians	Env. Tox.	1999	14(1)	77-88	
ZDB-PUB-011031-11	11598783	Van den Belt, K., Verheyen, R., and Witters, H.	Reproductive effects of ethynylestradiol and 4t-octylphenol on the zebrafish (Danio rerio)	Environ. Contam. Toxicol.	2001	41(4)	458-467	
ZDB-PUB-961014-567	none	Kihlstrom, J.E., Lundberg, C., and Hulth, L.	Number of eggs and young produced by zebrafish (Brachydanio rerio Hamilton-Buchanan), spawning in water containing small amounts of phenylmercuric acetate	Environ. Res.	1971	4	355-359	
ZDB-PUB-031204-13	14643290	Choich, J.A., El-Nabawi, A., and Silbergeld, E.K.	Evidence of histamine receptors in fish brain using an in vivo [14C]2-deoxyglucose autoradiographic method and an in vitro receptor-binding autoradiographic method	Environ. Res.	2004	94(1)	86-93	
ZDB-PUB-080415-1	18396270	Arukwe, A., Nordtug, T., Kortner, T.M., Mortensen, A.S., and Brakstad, O.G.	Modulation of steroidogenesis and xenobiotic biotransformation responses in zebrafish (Danio rerio) exposed to water-soluble fraction of crude oil	Environ. Res.	2008	107(3)	362-370	
ZDB-PUB-030911-2	12963406	Miyachi, Y., Kanao, T., and Okamoto, T.	Marked depression of time interval between fertilization period and hatching period following exposure to low-dose X-rays in zebrafish	Environ. Res.	2003	93(2)	216-219	
ZDB-PUB-060724-8	16841310	Noury, P., Geffard, O., Tutundjian, R., and Garric, J.	Non destructive in vivo measurement of ethoxyresorufin biotransformation by zebrafish prolarva: Development and application	Environ. Toxicol.	2006	21(4)	324-331	
ZDB-PUB-070330-15	17366571	Muncke, J., Junghans, M., and Eggen, R.I.	Testing estrogenicity of known and novel (xeno-)estrogens in the MolDarT using developing zebrafish (Danio rerio)	Environ. Toxicol.	2007	22(2)	185-193	
ZDB-PUB-080218-27	18214934	Liedtke, A., Muncke, J., Rüfenacht, K., and Eggen, R.I.	Molecular multi-effect screening of environmental pollutants using the MolDarT	Environ. Toxicol.	2008	23(1)	59-67	
ZDB-PUB-080326-30	18348292	Küster, E., and Altenburger, R.	Oxygen decline in biotesting of environmental samples-Is there a need for consideration in the acute zebrafish embryo assay?	Environ. Toxicol.	2008	23(6)	745-750	
ZDB-PUB-080728-18	18655176	Oh, S.M., Ryu, B.T., Kim, H.R., Choi, K., and Chung, K.H.	Molecular cloning of CYP1A gene and its expression by benzo(a)pyrene from goldfish (Carassius auratus)	Environ. Toxicol.	2009	24(3)	225-234	
ZDB-PUB-090914-50	19746408	Chen, Y.H., and Lin, J.S.	A novel zebrafish mutant with wavy-notochord: An effective biological index for monitoring the copper pollution of water from natural resources	Environ. Toxicol.	2009	\ 	\ 	
ZDB-PUB-020604-5	11769252	Pietsch, C., Wiegand, C., Ame, M.V., Nicklisch, A., Wunderlin, D., and Pflugmacher, S.	The effects of a cyanobacterial crude extract on different aquatic organisms: evidence for cyanobacterial toxin modulating factors	Environ. Toxicol.	2001	16(6)	535-542	
ZDB-PUB-040427-4	15101036	Nakari, T.	Estrogenicity of municipal effluents assessed in vivo and in vitro	Environ. Toxicol.	2004	19(3)	207-215	
ZDB-PUB-060724-9	16841311	Hinfray, N., Palluel, O., Turies, C., Cousin, C., Porcher, J.M., and Brion, F.	Brain and gonadal aromatase as potential targets of endocrine disrupting chemicals in a model species, the zebrafish (Danio rerio)	Environ. Toxicol.	2006	21(4)	332-337	
ZDB-PUB-080908-7	18767142	Hu, J., Liang, Y., Chen, M., and Wang, X.	Assessing the toxicity of TBBPA and HBCD by zebrafish embryo toxicity assay and biomarker analysis	Environ. Toxicol.	2009	24(4)	334-342	
ZDB-PUB-090511-3	19415753	Wu, L., Chen, L., Hou, J., Zhang, Y., Zhao, J., and Gao, H.	Assessment of sediment quality of Yangtze River estuary using zebrafish (Danio rerio) embryos	Environ. Toxicol.	2009			
ZDB-PUB-090526-14	19449387	Nakari, T., and Huhtala, S.	In vivo and in vitro toxicity of decabromodiphenyl ethane, a flame retardant	Environ. Toxicol.	2009			
ZDB-PUB-020604-6	11769256	Nguyen, L.T. and Janssen, C.R.	Comparative sensitivity of embryo-larval toxicity assays with African catfish (Clarias gariepinus) and zebra fish (Danio rerio)	Environ. Toxicol.	2001	16(6)	566-571	
ZDB-PUB-040427-5	15101035	Versonnen, B.J., and Janssen, C.R.	Xenoestrogenic effects of ethinylestradiol in zebrafish (Danio rerio)	Environ. Toxicol.	2004	19(3)	198-206	
ZDB-PUB-061222-11	16463263	Cazenave, J., Bistoni Mde, L., Zwirnmann, E., Wunderlin, D.A., and Wiegand, C.	Attenuating effects of natural organic matter on microcystin toxicity in zebra fish (Danio rerio) embryos -- benefits and costs of microcystin detoxication	Environ. Toxicol.	2006	21(1)	22-32	
ZDB-PUB-080218-26	18214933	Kausch, U., Alberti, M., Haindl, S., Budczies, J., and Hock, B.	Biomarkers for exposure to estrogenic compounds: Gene expression analysis in zebrafish (Danio rerio)	Environ. Toxicol.	2008	23(1)	15-24	
ZDB-PUB-080227-6	18246548	Sisman, T., Incekara, U., and Yildiz, Y.S.	Determination of acute and early life stage toxicity of fat-plant effluent using zebrafish (Danio rerio)	Environ. Toxicol.	2008	23(4)	480-486	
ZDB-PUB-080622-21	18563802	Yao, K., Zhu, L., Duan, Z., Chen, Z., Li, Y., and Zhu, X.	Comparison of R-metalaxyl and rac-metalaxyl in acute, chronic, and sublethal effect on aquatic organisms: Daphnia magna, Scenedesmus quadricanda, and Danio rerio	Environ. Toxicol.	2009	24(2)	148-156	
ZDB-PUB-090310-7	19260078	Scheil, V., Zürn, A., Köhler, H.R., and Triebskorn, R.	Embryo development, stress protein (Hsp70) responses, and histopathology in zebrafish (Danio rerio) following exposure to nickel chloride, chlorpyrifos, and binary mixtures of them	Environ. Toxicol.	2010	25(1)	83-93	
ZDB-PUB-990607-19	none	Wiegand, C., Pflugmacher, S., Oberemm, A., Meems, N., Beattie, K.A., Codd, G.A. and Steinberg, C.	Uptake and effects of microcystin-LR on detoxication enzymes of early life stages of the zebra fish (Danio rerio)	Environ. Toxicol.	1999	14(1)	89-96	
ZDB-PUB-091221-20	20014007	Sisman, T.	Early life stage and genetic toxicity of stannous chloride on zebrafish embryos and adults: Toxic effects of tin on zebrafish	Environ. Toxicol.	2009	\ 	\ 	
ZDB-PUB-041028-5	15506564	Prüfert, K., Winkler, C., Paulin-Levasseur, M., and Krohne, G.	The lamina-associated polypeptide 2 (LAP2) genes of zebrafish and chicken: no LAP2alpha isoform is synthesised by non-mammalian vertebrates	Eur. J. Cell Biol.	2004	83(8)	403-411	
ZDB-PUB-961014-1189		Vigh-Teichmann, J., Vigh, B., Szel, A., Rohlich, P., and Ali, A.M.	Opsin immunoreactivity of rod and cone-type photoreceptors in the pineal organ of developing and adult teleostean fishes: a comparison with the retina	Eur. J. Cell Biol.	1991	0	35	
ZDB-PUB-981215-10	9860133	Cerdà, J., Conrad, M., Markl, J., Brand, M., and Herrmann, H.	Zebrafish vimentin: molecular characterization, assembly properties and developmental expression	Eur. J. Cell Biol.	1998	77	175-187	
ZDB-PUB-020402-1	11893082	Hofemeister, H., Kuhn, C., Franke, W.W., Weber, K., and Stick, R.	Conservation of the gene structure and membrane-targeting signals of germ cell-specific lamin LIII in amphibians and fish	Eur. J. Cell Biol.	2002	81(2)	51-60	
ZDB-PUB-060616-40	16759737	Schild-Prufert, K., Giegerich, M., Schafer, M., Winkler, C., and Krohne, G.	Structural and functional characterization of the zebrafish lamin B receptor	Eur. J. Cell Biol.	2006	85(8)	813-824	
ZDB-PUB-081022-19	18849090	Sonntag, S., Söhl, G., Dobrowolski, R., Zhang, J., Theis, M., Winterhager, E., Bukauskas, F.F., and Willecke, K.	Mouse lens connexin23 (Gje1) does not form functional gap junction channels but causes enhanced ATP release from HeLa cells	Eur. J. Cell Biol.	2009	88(2)	65-77	
ZDB-PUB-961101-33	7803169	van Raamsdonk, W.	Energy metabolism in spinal motoneurons of the zebrafish	Eur. J. Morphol.	1994	32	212-216	
ZDB-PUB-990406-4	10342441	Wullimann M.F., Puelles, L., and Wicht, H.	Early postembryonic neural development in the zebrafish: a 3-D reconstruction of forebrain proliferation zones shows their relationship to prosomeres	Eur. J. Morphol.	1999	37	117-121	
ZDB-PUB-990628-27	10342443	Doldan, M.J., Prego, B., Holmqvist, B.I., and de Miguel, E.	Distribution of GABA-immunolabeling in the early zebrafish (Danio rerio) brain	Eur. J. Morphol.	1999	37(2-3)	126-129	
ZDB-PUB-961014-1159	9090993	van-Raamsdonk, W., Bosch, T.J., Smit-Onel, M.J., and Maslam, S.	Organisation of the zebrafish spinal cord: distribution of motoneuron dendrites and 5-HT containing cells	Eur. J. Morphol.	1996	34	65-77	
ZDB-PUB-961014-1166	8217468	van Raamsdonk, W., Smit-Onel, M.J., and Diegenbach, P.C.	The impact of target size on the level of the energy metabolism of spinal motoneurons. An enzyme histochemical and morphological study	Eur. J. Morphol.	1993	31	175-191	
ZDB-PUB-020403-21	11926491	Chuzhanova, N.A., Krawczak, M., Thomas, N., Nemytikova, L.A., Gusev, V.D., and Cooper, D.N.	The evolution of the vertebrate beta-globin gene promoter	Evol. Int. J. Org. Evol.	2002	56(2)	224-232	
ZDB-PUB-031001-12	14503628	McClure, M. and McCune, A.R.	Evidence for developmental linkage of pigment patterns with body size and shape in danios (Teleostei: Cyprinidae)	Evol. Int. J. Org. Evol.	2003	57(8)	1863-1875	
ZDB-PUB-090828-17	19701745	Prochnow, N., Hoffmann, S., Dermietzel, R., and Zoidl, G.	Replacement of a single cysteine in the fourth transmembrane region of zebrafish pannexin1 alters hemichannel gating behavior	Exp. Brain Res.	2009	\ 	\ 	
ZDB-PUB-961014-910	none	Rahmann, H.	Transportweg von 3-H-Glucose und Syntheseort von Polysacchariden den im Zentralnervensystem von Teleosteern	Exp. Brain Res.	1968	6	32-48	
ZDB-PUB-961014-994	5071277	Schmatolla, E. and Fisher, H.A.	Axonal transport in embryonic visual system in zebrafish	Exp. Brain Res.	1972	15	168-176	
ZDB-PUB-040109-23	14698814	Gerhard, G.S.	Comparative aspects of zebrafish (Danio rerio) as a model for aging research	Exp. Gerontol.	2003	38(11-12)	1333-1341	
ZDB-PUB-020912-18	12213556	Gerhard, G., Kauffman, E., Wang, X., Stewart, R., Moore, J., Kasales, C., Demidenko, E., and Cheng, K.	Life spans and senescent phenotypes in two strains of zebrafish (Danio rerio)	Exp. Gerontol.	2002	37(8-9)	1055-1068	
ZDB-PUB-030702-6	12814804	Murtha, J.M. and Keller, E.T.	Characterization of the heat shock response in mature zebrafish (Danio rerio)	Exp. Gerontol.	2003	38(6)	683-391	
ZDB-PUB-030716-7	12855287	Kishi, S., Uchiyama, J., Baughman, A.M., Goto, T., Lin, M.C., and Tsai, S.B.	The zebrafish as a vertebrate model of functional aging and very gradual senescence	Exp. Gerontol.	2003	38(7)	777-786	
ZDB-PUB-031111-6	14603366	Desplantez, T., Marics, I., Jarry-Guichard, T., Veteikis, R., Briand, J.P., Weingart, R., and Gros, D.	Characterization of zebrafish Cx43.4 connexin and its channels	Exp. Physiol.	2003	88(6)	681-690	
ZDB-PUB-031111-12	14597669	Swamynathan, S.K., Crawford, M.A., Robison, Jr., W.G., Kanungo, J., and Piatigorsky, J.	Adaptive differences in the structure and macromolecular compositions of the air and water corneas of the "four-eyed" fish (Anableps anableps)	FASEB J.	2003	17(14)	1996-2005	
ZDB-PUB-051219-3	16352647	Rivera-Milla, E., Oidtmann, B., Panagiotidis, C.H., Baier, M., Sklaviadis, T., Hoffmann, R., Zhou, Y., Solis, G.P., Stuermer, C.A., and Malaga-Trillo, E.	Disparate evolution of prion protein domains and the distinct origin of Doppel- and prion-related loci revealed by fish-to-mammal comparisons	FASEB J.	2006	20(2)	317-319	
ZDB-PUB-060501-7	16636105	Sohn, H., Kim, Y.S., Kim, H.T., Kim, C.H., Cho, E.W., Kang, H.Y., Kim, N.S., Kim, C.H., Ryu, S.E., Lee, J.H., and Ko, J.H.	Ganglioside GM3 is involved in neuronal cell death	FASEB J.	2006	20(8)	1248-1250	
ZDB-PUB-060531-4	16705083	Schlueter, P.J., Royer, T., Farah, M.H., Laser, B., Chan, S.J., Steiner, D.F., and Duan, C.	Gene duplication and functional divergence of the zebrafish insulin-like growth factor 1 receptors	FASEB J.	2006	20(8)	1230-1232	
ZDB-PUB-070203-3	17197390	Su, Y., Zhang, L., Gao, X., Meng, F., Wen, J., Zhou, H., Meng, A., and Chen, Y.G.	The evolutionally conserved activity of Dapper2 in antagonizing TGF-beta signaling	FASEB J.	2007	21(3)	682-690	
ZDB-PUB-080714-11	18606866	Lee, S.J., Chan, T.H., Chen, T.C., Liao, B.K., Hwang, P.P., and Lee, H.	LPA1 is essential for lymphatic vessel development in zebrafish	FASEB J.	2008	22(10)	3706-3715	
ZDB-PUB-090217-35	19211926	Li, H., Randall, W.R., and Du, S.J.	skNAC (skeletal Naca), a muscle-specific isoform of Naca (nascent polypeptide-associated complex alpha), is required for myofibril organization	FASEB J.	2009	23(6)	1988-2000	
ZDB-PUB-100309-24	20207941	Donnini, S., Solito, R., Cetti, E., Corti, F., Giachetti, A., Carra, S., Beltrame, M., Cotelli, F., and Ziche, M.	A{beta} peptides accelerate the senescence of endothelial cells in vitro and in vivo, impairing angiogenesis	FASEB J.	2010	\ 	\ 	
ZDB-PUB-070625-8	17548429	Jia, S., Omelchenko, M., Garland, D., Vasiliou, V., Kanungo, J., Spencer, M., Wolf, Y., Koonin, E., and Piatigorsky, J.	Duplicated gelsolin family genes in zebrafish: a novel scinderin-like gene (scinla) encodes the major corneal crystallin	FASEB J.	2007	21(12)	3318-3328	
ZDB-PUB-080527-14	18495758	Mathew, L.K., Sengupta, S.S., Ladu, J., Andreasen, E.A., and Tanguay, R.L.	Crosstalk between AHR and Wnt signaling through R-Spondin1 impairs tissue regeneration in zebrafish	FASEB J.	2008	22(8)	3087-3096	
ZDB-PUB-090505-12	19406843	Cao, P., Hanai, J.I., Tanksale, P., Imamura, S., Sukhatme, V.P., and Lecker, S.H.	Statin-induced muscle damage and atrogin-1 induction is the result of a geranylgeranylation defect	FASEB J.	2009	23(9)	2844-2854	
ZDB-PUB-100119-23	20081093	Dai, W., Kamei, H., Zhao, Y., Ding, J., Du, Z., and Duan, C.	Duplicated zebrafish insulin-like growth factor binding protein-5 genes with split functional domains: evidence for evolutionarily conserved IGF binding, nuclear localization, and transactivation activity	FASEB J.	2010	\ 	\ 	
ZDB-PUB-030714-1	12832288	Oertle, T., Klinger, M., Stürmer, C.A., and Schwab, M.E.	A reticular rhapsody: phylogenic evolution and nomenclature of the RTN/Nogo gene family	FASEB J.	2003	17(10)	1238-1247	
ZDB-PUB-040216-13	14766799	Danilova, N., Krupnik, V.E., Sugden, D., and Zhdanova, I.V.	Melatonin stimulates cell proliferation in zebrafish embryo and accelerates its development.	FASEB J.	2004	18(6)	751-753	
ZDB-PUB-050523-1	15901671	Gurvich, N., Berman, M.G., Wittner, B.S., Gentleman, R.C., Klein, P.S., and Green, J.B.	Association of valproate-induced teratogenesis with histone deacetylase inhibition in vivo	FASEB J.	2005	19(9)	1166-1168	
ZDB-PUB-060616-33	16754745	Wang, L., Mukhopadhyay, D., and Xu, X.	C terminus of RGS-GAIP-interacting protein conveys neuropilin-1-mediated signaling during angiogenesis	FASEB J.	2006	20(9)	1513-1515	
ZDB-PUB-090629-22	19546304	Kan, N.G., Junghans, D., and Izpisua Belmonte, J.C.	Compensatory growth mechanisms regulated by BMP and FGF signaling mediate liver regeneration in zebrafish after partial hepatectomy	FASEB J.	2009	23(10)	3516-3525	
ZDB-PUB-090914-19	19723704	Rampon, C., Bouzaffour, M., Ostuni, M.A., Dufourcq, P., Girard, C., Freyssinet, J.M., Lacapere, J.J., Schweizer-Groyer, G., and Vriz, S.	Translocator protein (18 kDa) is involved in primitive erythropoiesis in zebrafish	FASEB J.	2009	23(12)	4181-4192	
ZDB-PUB-961014-1081	8050667	Strähle, U. and Blader, P.	Early neurogenesis in the zebrafish embryo	FASEB J.	1994	8	692-698	
ZDB-PUB-070303-36	17326751	Whipps, C.M., Dougan, S.T., and Kent, M.L.	Mycobacterium haemophilum infections of zebrafish (Danio rerio) in research facilities	FEMS Microbiol. Lett.	2007	270(1)	21-26	
ZDB-PUB-030908-11	12951238	Prouty, M.G., Correa, N.E., Barker, L.P., Jagadeeswaran, P., and Klose, K.E.	Zebrafish-Mycobacterium marinum model for mycobacterial pathogenesis	FEMS Microbiol. Lett.	2003	225(2)	177-182	
ZDB-PUB-030103-1	none	Tocher, D.R., Agaba, M., Hastings, N., Bell, J.G., Dick, J.R., and Teale, A.J.	Nutritional regulation of hepatocyte fatty acid desaturation and polyunsaturated fatty acid composition in zebrafish (Danio rerio) and tilapia (Oreochromis niloticus)	Fish Physiol. Biochem.	2001	24(4)	309-320	
ZDB-PUB-060309-1	none	Andersen, L., Bjerregaard, P., and Korsgaard, B.	Vitellogenin induction and brain aromatase activity in adult male and female zebrafish exposed to endocrine disrupters	Fish Physiol. Biochem.	2003	28(1-4)	319-321	
ZDB-PUB-060309-4	none	Maack, G., Segner, H. and Tyler, C.R.	Ontogeny of sexual differentiation in different strains of zebrafish (Danio rerio)	Fish Physiol. Biochem.	2003	28(1-4)	125-128	
ZDB-PUB-060309-7	none	Ge, W., Peter, R.E. and Nagahama, Y.	Activin and its receptors in the goldfish	Fish Physiol. Biochem.	1997	17(1-6)	143-153	
ZDB-PUB-071023-1	none	Chen, Y.H., Chen, W.L., Wang, Y.H., Huang, M.Y. and Chern, M.K.	Spatiotemporal expression of zebrafish D -amino acid oxidase during early embryogenesis	Fish Physiol. Biochem.	2007	33(1)	73-80	
ZDB-PUB-961014-672	none	Lambert, J.G.D., van-den-Hurk, R., Schoonan, W.G.E.J., Resink, J.W., and VanOordt, P.G.W.J.	Gonadal steroidogenesis and the possible role of steroid glucuronides as sex pheromones in two species of teleosts	Fish Physiol. Biochem.	1986	2	101-107	
ZDB-PUB-020219-12	none	Farchi-Pisanty, O., Sternberg, H., and Moav, B.	Transcriptional regulation of fish growth hormone gene	Fish Physiol. Biochem.	1997	17(1-6)	237-246	
ZDB-PUB-030102-2	none	Wang, W.-D., Chen, Y.-M., and Hu, C.-H.	Detection of Ah receptor and Ah receptor nuclear translocator mRNAs in the oocytes and developing embryos of zebrafish (Danio rerio)	Fish Physiol. Biochem.	1998	18	49-57	
ZDB-PUB-060309-2	none	Andersen, L., Kinnberg, K., Holbech, H., Korsgaard, B. and Bjerregaard, P.	Evaluation of a 40 day Assay for Testing Endocrine Disrupters: Effects of an Anti-Estrogen and an Aromatase Inhibitor on Sex Ratio and Vitellogenin Concentrations in Juvenile Zebrafish (Danio rerio)	Fish Physiol. Biochem.	2004	30(3-4)	257-266	
ZDB-PUB-060309-5	none	Yoshizaki, G., Takeuchi, Y., Kobayashi, T., Ihara, S., and Takeuchi, T.	Primordial germ cells: the blueprint for a piscine life	Fish Physiol. Biochem.	2002	26(1)	3-12	
ZDB-PUB-060309-8	none	Perez-Sanchez, J., Calduch-Giner, J.A., Mingarro, M., Vega-Rubin de Celis, S., Gomez-Requeni, P., Saera-Vila, A., Astola, A. and Valdivia, M.M.	Overview of Fish Growth Hormone Family. New Insights in Genomic Organization and Heterogeneity of Growth Hormone Receptors	Fish Physiol. Biochem.	2002	27(3-4)	243-258	
ZDB-PUB-080825-5	none	Strumbo, B., Sangiorgio, L., Ronchi, S., Gready, J.E., and Simonic, T.	Cloning and analysis of transcripts and genes encoding fish-specific proteins related to PrP	Fish Physiol. Biochem.	2006	32(4)	339-353	
ZDB-PUB-090106-36	19116768	Almeida, D.V., da Silva Nornberg, B.F., Geracitano, L.A., Barros, D.M., Monserrat, J.M., and Marins, L.F.	Induction of phase II enzymes and hsp70 genes by copper sulfate through the electrophile-responsive element (EpRE): insights obtained from a transgenic zebrafish model carrying an orthologous EpRE sequence of mammalian origin	Fish Physiol. Biochem.	2009			
ZDB-PUB-090424-20	19381848	Chen, L.C., Wu, J.L., Shiau, C.Y., and Chen, J.Y.	Organization and promoter analysis of the zebrafish (Danio rerio) chemokine gene (CXC-64) promoter	Fish Physiol. Biochem.	2009			
ZDB-PUB-021017-45	none	Hsu, T., Cheng, C.S., Shih, C.Y., and Yeh, F.L.	Detection and partial characterization of a UV-damaged-DNA binding activity highly expressed in zebrafish (Danio rerio) embryos	Fish Physiol. Biochem.	2002	25(1)	41-51	
ZDB-PUB-060309-3	none	Kazeto, Y., Goto-Kazeto, R., Place, A.R. and Trant, J.M.	Aromatase expression in zebrafish and channel catfish brains: changes in transcript abundance associated with the reproductive cycle and exposure to endocrine disrupting chemicals	Fish Physiol. Biochem.	2003	28(1-4)	29-32	
ZDB-PUB-060309-6	none	Sternberg, H., and Moav, B.	Regulation of the growth hormone gene by fish thyroid/retinoid receptors	Fish Physiol. Biochem.	1999	20(4)	331-339	
ZDB-PUB-081031-5	18958591	Wang, Y., Zhou, L., Li, Z., and Gui, J.F.	Molecular cloning and expression characterization of ApoC-I in the orange-spotted grouper	Fish Physiol. Biochem.	2008	34(4)	339-348	
ZDB-PUB-090714-8	19578937	Chen, L., Zhou, J., Xu, H., Xu, G., and Xue, J.	Identification and developmental expression of Dec2 in zebrafish	Fish Physiol. Biochem.	2009	\ 	\ 	
ZDB-PUB-091221-32	20020200	Jiang, Q., Liu, D., Sun, S., Hu, J., Tan, L., Wang, Y., Gui, Y., Yu, M., and Song, H.	Critical role of connexin43 in zebrafish late primitive and definitive hematopoiesis	Fish Physiol. Biochem.	2009	\ 	\ 	
ZDB-PUB-100119-4	20069358	Chen, C.F., Wen, H.S., Wang, Z.P., He, F., Zhang, J.R., Chen, X.Y., Jin, G.X., Shi, B., Shi, D., Yang, Y.P., Li, J.F., Qi, B.X., and Li, N.	Cloning and expression of P450c17-I (17alpha-hydroxylase/17,20-lyase) in brain and ovary during gonad development in Cynoglossus semilaevis	Fish Physiol. Biochem.	2010	\ 	\ 	
ZDB-PUB-030106-11	none	Lee, J.-S. and Gye, M.C.	Zebrafish Danio rerio proliferating cell nuclear antigen (PCNA) cloning and characterization	Fish. Sci.	1999	65(6)	955-958	
ZDB-PUB-090318-4	19273302	Hu, W., Cheng, L., Xia, H., Sun, D., Li, D., Li, P., Song, Y., and Ma, X.	Teratogenic effects of sodium thiosulfate on developing zebrafish embryos	Front. Biosci.	2009	14	3680-3687	
ZDB-PUB-040216-15	14766348	Okamoto, H., Hirate, Y., and Ando, H.	Systematic identification of factors in zebrafish regulating the early midbrain and cerebellar development by odered differential display and caged mRNA technology	Front. Biosci.	2004	9	93-99	
ZDB-PUB-090406-2	19073184	de Jong-Curtain, T.A., Parslow, A.C., Trotter, A.J., Hall, N.E., Verkade, H., Tabone, T., Christie, E.L., Crowhurst, M.O., Layton, J.E., Shepherd, I.T., Nixon, S.J., Parton, R.G., Zon, L.I., Stainier, D.Y., Lieschke, G.J., and Heath, J.K.	Abnormal nuclear pore formation triggers apoptosis in the intestinal epithelium of elys-deficient zebrafish	Gastroenterology	2009	136(3)	902-911	
ZDB-PUB-090828-11	19698716	Brugman, S., Liu, K.Y., Lindenbergh-Kortleve, D., Samsom, J.N., Furuta, G.T., Renshaw, S.A., Willemsen, R., and Nieuwenhuis, E.E.	Oxazolone-induced enterocolitis in zebrafish depends on the composition of the intestinal microbiota	Gastroenterology	2009	137(5)	1757.e1-1767.e1	
ZDB-PUB-090706-10	19563808	Stuckenholz, C., Lu, L., Thakur, P., Kaminski, N., and Bahary, N.	FACS-Assisted Microarray Profiling Implicates Novel Genes and Pathways in Zebrafish Gastrointestinal Tract Development	Gastroenterology	2009	137(4)	1321-1332	
ZDB-PUB-080616-22	18549880	Park, S.W., Davison, J.M., Rhee, J., Hruban, R.H., Maitra, A., and Leach, S.D.	Oncogenic KRAS Induces Progenitor Cell Expansion and Malignant Transformation in Zebrafish Exocrine Pancreas	Gastroenterology	2008	134(7)	2080-2090	
ZDB-PUB-080924-3	18804112	Flores, M.V., Hall, C.J., Davidson, A.J., Singh, P.P., Mahagaonkar, A.A., Zon, L.I., Crosier, K.E., and Crosier, P.S.	Intestinal Differentiation in Zebrafish Requires Cdx1b, a Functional Equivalent of Mammalian Cdx2	Gastroenterology	2008	135(5)	1665-1675	
ZDB-PUB-090921-7	19747919	Weiss, F.U., Marques, I.J., Woltering, J.M., Vlecken, D.H., Aghdassi, A., Partecke, L.I., Heidecke, C.D., Lerch, M.M., and Bagowski, C.P.	Retinoic acid receptor antagonists inhibit miR-10a expression and block metastatic behavior of pancreatic cancer	Gastroenterology	2009	137(6)	2136-2145.e1-7	
ZDB-PUB-000724-1	10433969	Xie, S., Wang, Z., Okano, M., Nogami, M., Li, Y., He, W.W., Okumura, K., and Li, E.	Cloning, expression and chromosome locations of the human DNMT3 gene family	Gene	1999	236(1)	87-95	
ZDB-PUB-001024-1	11024280	Colas, J. and Schoenwolf, GC.	Subtractive hybridization identifies chick-cripto, a novel EGF-CFC ortholog expressed during gastrulation, neurulation and early cardiogenesis	Gene	2000	255(2)	205-217	
ZDB-PUB-010601-5	11376954	Yoder, J.A. and Litman, G.W.	Corrigendum to: "The zebrafish fth1, slc3a2, men1, pc, fgf3 and cycd1 genes define two regions of conserved synteny between linkage group 7 and human chromosome 11q13"	Gene	2001	269(1-2)	227	
ZDB-PUB-021002-2	12234667	Dubois, G., Haftek, Z., Crozet, C., Garrone, R., and Le Guellec, D.	Structure and spatio temporal expression of the full length DNA complementary to RNA coding for alpha2 type I collagen of zebrafish	Gene	2002	294(1-2)	55-65	
ZDB-PUB-030116-10	12459262	Lassiter, C.S., Kelley, B., and Linney, E.	Genomic structure and embryonic expression of estrogen receptor beta a (ERbetaa) in zebrafish (Danio rerio)	Gene	2002	299(1-2)	141-151	
ZDB-PUB-030715-3	12853146	Sharma, M.K., Denovan-Wright, E.M., Boudreau, M.E., and Wright, J.M.	A cellular retinoic acid-binding protein from zebrafish (Danio rerio): cDNA sequence, phylogenetic analysis, mRNA expression, and gene linkage mapping	Gene	2003	311	119-128	
ZDB-PUB-030716-12	12801639	Nielsen, A.L. and Jorgensen, A.L.	Structural and functional characterization of the zebrafish gene for glial fibrillary acidic protein, GFAP	Gene	2003	310	123-132	
ZDB-PUB-030812-2	12909350	Jang, W.S., Kim, E.J., Ro, H., Kim, K.E., Huh, T.L., Kim, C.-H., and Rhee, M.	Expression of a novel type I keratin, DAPK-1 in the dorsal aorta and pronephric duct of the zebrafish embryos	Gene	2003	312	145-150	
ZDB-PUB-031104-1	12957391	Poulter, R.T., Goodwin, T.J., and Butler, M.I.	Vertebrate helentrons and other novel Helitrons	Gene	2003	313(2003)	201-212	
ZDB-PUB-040811-3	15302408	Wu, Y.L., and Gong, Z.	A novel zebrafish kelchlike gene klhl and its human ortholog KLHL display conserved expression patterns in skeletal and cardiac muscles	Gene	2004	338(1)	75-83	
ZDB-PUB-041029-4	15556292	Hosono, K., Sasaki, T., Minoshima, S., and Shimizu, N.	Identification and characterization of a novel gene family YPEL in a wide spectrum of eukaryotic species	Gene	2004	340(1)	31-43	
ZDB-PUB-050105-1	14659876	Rentzsch, F., Kramer, C., and Hammerschmidt, M.	Specific and conserved roles of TAp73 during zebrafish development	Gene	2003	323	19-30	
ZDB-PUB-050714-5	16005165	Lin, S.L., Chang, D., and Ying, S.Y.	Asymmetry of intronic pre-miRNA structures in functional RISC assembly	Gene	2005	356	32-38	
ZDB-PUB-051019-13	16229975	Bjarnadottir, T.K., Fredriksson, R., and Schioth, H.B.	The gene repertoire and the common evolutionary history of glutamate, pheromone (V2R), taste(1) and other related G protein-coupled receptors	Gene	2005	362C	70-84	
ZDB-PUB-051128-1	16297574	Padhi, B.K., Akimenko, M.A., and Ekker, M.	Independent expansion of the keratin gene family in teleostean fish and mammals: An insight from phylogenetic analysis and radiation hybrid mapping of keratin genes in zebrafish	Gene	2006	368	37-45	
ZDB-PUB-060313-16	16515849	Titus, T.A., Selvig, D.R., Qin, B., Wilson, C., Starks, A.M., Roe, B.A., and Postlethwait, J.H.	The Fanconi anemia gene network is conserved from zebrafish to human	Gene	2006	371(2)	211-223	
ZDB-PUB-060323-4	16530355	Bromee, T., Venkatesh, B., Brenner, S., Postlethwait, J.H., Yan, Y.L., and Larhammar, D.	Uneven evolutionary rates of bradykinin B1 and B2 receptors in vertebrate lineages	Gene	2006	373	100-108	
ZDB-PUB-060419-8	16616995	Fujimori, K., Inui, T., Uodome, N., Kadoyama, K., Aritake, K., and Urade, Y.	Zebrafish and chicken lipocalin-type prostaglandin D synthase homologues: Conservation of mammalian gene structure and binding ability for lipophilic molecules, and difference in expression profile and enzyme activity	Gene	2006	375	14-25	
ZDB-PUB-060508-3	16647825	Pugacheva, E.M., Kwon, Y.W., Hukriede, N.A., Pack, S., Flanagan, P.T., Ahn, J.C., Park, J.A., Choi, K.S., Kim, K.W., Loukinov, D., Dawid, I.B., and Lobanenkov, V.V.	Cloning and characterization of zebrafish CTCF: Developmental expression patterns, regulation of the promoter region, and evolutionary aspects of gene organization	Gene	2006	375	26-36	
ZDB-PUB-060623-6	16781089	Chou, C.F., Loh, C.B., Foo, Y.K., Shen, S., Fielding, B.C., Tan, T.H., Khan, S., Wang, Y., Lim, S.G., Hong, W., Tan, Y.J., and Fu, J.	ACE2 orthologues in non-mammalian vertebrates (Danio, Gallus, Fugu, Tetraodon and Xenopus)	Gene	2006	377	46-55	
ZDB-PUB-060710-10	16820272	Maak, S., Neumann, K., and Swalve, H.H.	Identification and analysis of putative regulatory sequences for the MYF5/MYF6 locus in different vertebrate species	Gene	2006	379	141-147	
ZDB-PUB-061116-10	17097837	Beisel, K.W., Rocha-Sanchez, S.M., Ziegenbein, S.J., Morris, K.A., Kai, C., Kawai, J., Carninci, P., Hayashizaki, Y., and Davis, R.L.	Diversity of Ca(2+)-activated K(+) channel transcripts in inner ear hair cells	Gene	2007	386(1-2)	11-23	
ZDB-PUB-061205-13	17118579	Bai, J., Solberg, C., Fernandes, J.M., and Johnston, I.A.	Profiling of maternal and developmental-stage specific mRNA transcripts in Atlantic halibut Hippoglossus hippoglossus	Gene	2007	386(1-2)	202-210	
ZDB-PUB-070303-2	17292566	Fernandes, J.M., Kinghorn, J.R., and Johnston, I.A.	Differential regulation of multiple alternatively spliced transcripts of MyoD	Gene	2007	391(1-2)	178-185	
ZDB-PUB-070625-14	17553638	Watanabe, M., Hiraide, K., and Okada, N.	Functional diversification of kir7.1 in cichlids accelerated by gene duplication	Gene	2007	399(1)	46-52	
ZDB-PUB-070711-39	17616268	Pizzo, E., and D'Alessio, G.	The success of the RNase scaffold in the advance of biosciences and in evolution	Gene	2007	406(1-2)	8-12	
ZDB-PUB-070711-41	17618068	Zou, S.M., Jiang, X.Y., He, Z.Z., Yuan, J., Yuan, X.N., and Li, S.F.	Hox gene clusters in blunt snout bream, Megalobrama amblycephala and comparison with those of zebrafish, fugu and medaka genomes	Gene	2007	400(1-2)	60-70	
ZDB-PUB-080326-22	18343608	Babin, P.J.	Conservation of a vitellogenin gene cluster in oviparous vertebrates and identification of its traces in the platypus genome	Gene	2008	413(1-2)	76-82	
ZDB-PUB-080826-24	18706984	Wu, S., De Croos, J.N., and Storey, K.B.	Cold acclimation-induced up-regulation of the ribosomal protein L7 gene in the freeze tolerant wood frog, Rana sylvatica	Gene	2008	424(1-2)	48-55	
ZDB-PUB-090629-12	19540320	Wang, Z., Nishimura, Y., Shimada, Y., Umemoto, N., Hirano, M., Zang, L., Oka, T., Sakamoto, C., Kuroyanagi, J., and Tanaka, T.	Zebrafish beta-adrenergic receptor mRNA expression and control of pigmentation	Gene	2009	446(1)	18-27	
ZDB-PUB-961014-464	1673109	Holland, P.W.	Cloning and evolutionary analysis of msh-like homeobox genes from mouse, zebrafish, and ascidian	Gene	1991	98	253-257	
ZDB-PUB-961014-836	2468579	Njolstad, P.R., Molven, A., Eiken, H.G., and Fjose, A.	Structure and neural expression of a zebrafish homeobox sequence	Gene	1988	73	33-46	
ZDB-PUB-961014-897	7538963	Qiao, T., Maddox, B.K., and Erickson, H.P.	A novel alternative splice domain in zebrafish tenascin-C	Gene	1995	156	307-308	
ZDB-PUB-970918-24	9074495	Gelsthorpe, M., Pulumati, M., McCallum, C., Dangm Vu K., and Tsubota, S.I.	The putative cell cycle gene, enhancer of rudimentary, encodes a highly conserved protein found in plants and animals	Gene	1997	186(2)	189-195	
ZDB-PUB-971114-5	9370264	Martinez-Barberá, J.P., H. Toresson, S. Da Rocha, and S. Krauss	Cloning and expression of three members of the zebrafish Bmp family: Bmp2a, Bmp2b, and Bmp4	Gene	1997	198(1-2)	53-59	
ZDB-PUB-990113-4	9373136	Kazanskaya, O.V., Severtzova, E.A., Barth, K.A., Ermakova, G.V., Lukyanov, S.A., Benyumov, A.O., Pannese, M., Boncinelli, E., Wilson, S.W., and Zaraisky, A.G.	Anf: a novel class of vertebrate homeobox genes expressed at the anterior end of the main embryonic axis	Gene	1997	200	25-34	
ZDB-PUB-000505-18	10767528	Dick, A., Mayr, T., Bauer, H., Meier, A., and Hammerschmidt, M.	Cloning and characterization of zebrafish smad2, smad3 and smad4	Gene	2000	246(1-2)	69-80	
ZDB-PUB-000622-7	10854778	Slavov, D., Crnogorac-Jurcevic, T., Clark, M., and Gardiner, K.	Comparative analysis of the DRADA A-to-I RNA editing gene from mammals, pufferfish and zebrafish	Gene	2000	250(1-2)	53-60	
ZDB-PUB-000825-5	10903449	Kim, S., Karsi, A., Dunham, R.A., and Liu, Z.	The skeletal muscle alpha-actin gene of channel catfish (Ictalurus punctatus) and its association with piscine specific SINE elements	Gene	2000	252(1-2)	173-181	
ZDB-PUB-001101-2	11054560	Wang, H., Yan, T., Tan, J.T., and Gong, Z.	A zebrafish vitellogenin gene (vg3) encodes a novel vitellogenin without a phosvitin domain and may represent a primitive vertebrate vitellogenin gene	Gene	2000	256(1-2)	303-310	
ZDB-PUB-010112-1	11167010	Yoder, J.A. and Litman, G.W.	The zebrafish fth1, slc3a2, men1, pc, fgf3 and cycd1 genes define two regions of conserved synteny between linkage group 7 and human chromosome 11q13	Gene	2000	261	5-242	
ZDB-PUB-010130-4	11137292	Riggio, M., Scudiero, R., Filosa, S., and Parisi, E.	Sex- and tissue-specific expression of aspartic proteinases in Danio rerio (zebrafish)	Gene	2000	260(1-2)	67-75	
ZDB-PUB-010601-12	11368902	Chen, M.H., Lin, G., Gong, H., Weng, C., Chang, C., and Wu, J.	The characterization of prepro-Insulin-like growth factor-1 Ea-2 expression and Insulin-like growth factor-1 genes (devoid 81 bp) in the zebrafish (Danio rerio)	Gene	2001	268(1-2)	67-75	
ZDB-PUB-010912-31	11675014	Bolaños-Jiménez, F., Bordais, A., Behra, M., Strähle, U., Mornet, D., Sahel, J., and Rendon, A.	Molecular cloning and characterization of dystrophin and Dp71, two products of the Duchenne Muscular Dystrophy gene, in zebrafish	Gene	2001	274(1-2)	217-226	
ZDB-PUB-020102-2	11750126	Lyons, S.E., Shue, B.C., Lei, L., Oates, A.C., Zon, L.I., and Liu, P.P.	Molecular cloning, genetic mapping, and expression analysis of four zebrafish c/ebp genes	Gene	2001	281(1-2)	43-51	
ZDB-PUB-021015-17	12354655	van de Peer, Y., Frickey, T., Taylor, J., and Meyer, A.	Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes	Gene	2002	295(2)	205-211	
ZDB-PUB-021119-1	12426101	Liu, M., Reimschuessel, R., and Hassel, B.A.	Molecular cloning of the fish interferon stimulated gene, 15 kDa (ISG15) orthologue: a ubiquitin-like gene induced by nephrotoxic damage	Gene	2002	298(2)	129-139	
ZDB-PUB-030714-3	12354661	Williams, H., Brenner, S., and Venkatesh, B.	Identification and analysis of additional copies of the platelet-derived growth factor receptor and colony stimulating factor 1 receptor genes in fugu	Gene	2002	295(2)	255-264	
ZDB-PUB-030815-3	12706884	Cachot, J., Bultelle, F., Drouot, L., Galgani, F., Frebourg, T., Leboulenger, F., and Danger, J.M.	Molecular cloning of flounder Xp18, a newly identified highly conserved protein mainly expressed in the ovary	Gene	2003	307	13-21	
ZDB-PUB-031008-2	14527725	Ventura-Holman, T., Lu, D., Si, X., Izevbigie, E.B., and Maher, J.F.	The Fem1c genes: conserved members of the Fem1 gene family in vertebrates	Gene	2003	315	133-139	
ZDB-PUB-031009-5	14527721	Premzl, M., Sangiorgio, L., Strumbo, B., Marshall Graves, J.A., Simonic, T., and Gready, J.E.	Shadoo, a new protein highly conserved from fish to mammals and with similarity to prion protein	Gene	2003	314	89-102	
ZDB-PUB-040205-7	11054532	Schlake, T., Schorpp, M., and Boehm, T.	Formation of regulator/target gene relationships during evolution	Gene	2000	256(1-2)	29-34	
ZDB-PUB-040319-10	15019990	Mackenzie, N.C., Brito, M., Reyes, A.E., and Allende, M.L.	Cloning, expression pattern and essentiality of the high-affinity copper transporter 1 (ctr1) gene in zebrafish	Gene	2004	328	113-120	
ZDB-PUB-040415-1	15087125	Adolph, K.W.	The zebrafish metaxin 3 gene (mtx3): cDNA and protein structure, and comparison to zebrafish metaxins 1 and 2	Gene	2004	330	67-73	
ZDB-PUB-040617-1	15194199	Pilipenko, V.V., Reece, A., Choo, D.I., and Greinwald, J.H. Jr.	Genomic organization and expression analysis of the murine Fam3c gene	Gene	2004	335	159-168	
ZDB-PUB-040719-8	15256256	Lin, C.Y., Chen, Y.H., Lee, H.C., and Tsai, H.J.	Novel cis-element in intron 1 represses somite expression of zebrafish myf-5	Gene	2004	334	63-72	
ZDB-PUB-040803-3	15276211	Armas, P., Cachero, S., Lombardo, V.A., Weiner, A., Allende, M.L., and Calcaterra, N.B.	Zebrafish cellular nucleic acid-binding protein: gene structure and developmental behaviour	Gene	2004	337	151-161	
ZDB-PUB-040811-1	15302404	Gong, H.Y., Lin, C.J., Chen, M.H., Hu, M.C., Lin, G.H., Zhou, Y., Zon, L.I., and Wu, J.L.	Two distinct teleost hepatocyte nuclear factor 1 genes, hnf1alpha/tcf1 and hnf1beta/tcf2, abundantly expressed in liver, pancreas, gut and kidney of zebrafish	Gene	2004	338(1)	35-46	
ZDB-PUB-041012-6	15475159	Hung, C.M., and Li, C.	Identification and phylogenetic analyses of the protein arginine methyltransferase gene family in fish and ascidians	Gene	2004	340(2)	179-187	
ZDB-PUB-051019-11	16226854	Hashiguchi, Y., and Nishida, M.	Evolution of vomeronasal-type odorant receptor genes in the zebrafish genome	Gene	2005	362C	19-28	
ZDB-PUB-051219-7	16356661	Sugano, T., Kajikawa, M., and Okada, N.	Isolation and characterization of retrotransposition-competent LINEs from zebrafish	Gene	2006	365	74-82	
ZDB-PUB-060216-6	16472944	Kurosawa, G., Takamatsu, N., Takahashi, M., Sumitomo, M., Sanaka, E., Yamada, K., Nishii, K., Matsuda, M., Asakawa, S., Ishiguro, H., Miura, K., Kurosawa, Y., Shimizu, N., Kohara, Y., and Hori, H.	Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes	Gene	2006	370	75-82	
ZDB-PUB-060615-3	12062809	Vitale, L., Casadei, R., Canaider, S., Lenzi, L., Strippoli, P., D'Addabbo, P., Giannone, S., Carinci, P., and Zannotti, M.	Cysteine and tyrosine-rich 1 (CYYR1), a novel unpredicted gene on human chromosome 21 (21q21.2), encodes a cysteine and tyrosine-rich protein and defines a new family of highly conserved vertebrate-specific genes	Gene	2002	290(1-2)	141-151	
ZDB-PUB-061020-36	17034960	Pritham, E.J., Putliwala, T., and Feschotte, C.	Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses	Gene	2007	390(1-2)	3-17	
ZDB-PUB-061020-56	17049188	Ichiyanagi, K., and Okada, N.	Genomic alterations upon integration of zebrafish L1 elements revealed by the TANT method	Gene	2006	383	108-116	
ZDB-PUB-061108-15	17084042	Hashimoto, H., Uji, S., Kurokawa, T., Washio, Y., and Suzuki, T.	Flounder and fugu have a single lefty gene that covers the functions of lefty1 and lefty2 of zebrafish during L-R patterning	Gene	2007	387(1-2)	126-132	
ZDB-PUB-061221-18	7835718	Shimizu, E., Shirasawa, H., Kodama, K., Koseki, K., Sato, T., and Simizu, B.	Cloning and sequencing of the murine Mxi1 cDNA	Gene	1995	152(2)	283-284	
ZDB-PUB-061222-6	15177678	Relaix, F., Molinari, S., Lemonnier, M., Schafer, B., and Buckingham, M.	The in vivo form of the murine class VI POU protein Emb is larger than that encoded by previously described transcripts	Gene	2004	333	35-46	
ZDB-PUB-070827-9	17707598	Selz, Y., Braasch, I., Hoffmann, C., Schmidt, C., Schultheis, C., Schartl, M., and Volff, J.N.	Evolution of melanocortin receptors in teleost fish: The melanocortin type 1 receptor	Gene	2007	401(1-2)	114-122	
ZDB-PUB-071129-4	18037593	Wu, Y.L., Pan, X., Mudumana, S.P., Wang, H., Kee, P.W., and Gong, Z.	Development of a heat shock inducible gfp transgenic zebrafish line by using the zebrafish hsp27 promoter	Gene	2008	408(1-2)	85-94	
ZDB-PUB-080722-2	18619527	Halbig, K.M., Lekven, A.C., and Kunkel, G.R.	Zebrafish U6 small nuclear RNA gene promoters contain a SPH element in an unusual location	Gene	2008	421(1-2)	89-94	
ZDB-PUB-081022-26	18852033	Quarto, N., Pizzo, E., and D'Alessio, G.	Temporal and spatial expression of RNases from zebrafish (Danio rerio)	Gene	2008	427(1-2)	32-41	
ZDB-PUB-090928-6	19770025	Tani, S., Kusakabe, R., Naruse, K., Sakamoto, H., and Inoue, K.	Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development	Gene	2010	449(1-2)	41-49	
ZDB-PUB-961014-565	8654946	Kiefer, P., Strähle, U., and Dickson, C.	The zebrafish Fgf-3 gene: cDNA sequence, transcript structure and genomic organization	Gene	1996	168(2)	211-215	
ZDB-PUB-970108-3	8707062	Moss, J.B., Price, A.L., Raz, E., Driever, W., and Rosenthal, N.	Green fluorescent protein marks skeletal muscle in murine cell lines and zebrafish	Gene	1996	173	89-98	
ZDB-PUB-981020-2	9795179	Karlovich, C.A., John, R.M., Ramirez, L., Stainier, D.Y.R., and Myers, R.M.	Characterization of the Huntington's disease (HD) gene homolog in zebrafish Danio rerio	Gene	1998	217	117-125	
ZDB-PUB-981020-5	9714724	Seo, H.C., Drivenes, O., Ellingsen, S., and Fjose, A.	Transient expression of a novel Six3-related zebrafish gene during gastrulation and eye formation	Gene	1998	216	39-46	
ZDB-PUB-990203-3	9931412	Kawakami, K., Koga, A., Hori, H., and Shima, A.	Excision of the Tol2 transposable element of the medaka fish, Oryzias latipes, in zebrafish, Danio rerio	Gene	1998	225	17-22	
ZDB-PUB-991112-3	10548740	Göttgens, B., Barton, L.M., Grafham, D., Vaudin, M., and Green, A.R.	Tdr2, a new zebrafish transposon of the Tc1 family	Gene	1999	239(2)	373-379	
ZDB-PUB-991208-49	10564832	Kawakami, K. and Shima A.	Identification of the Tol2 transposase of the medaka fish Orzias latipes that catalyzes excision of a nonautonomous Tol2 element in zebrafish Danio rerio	Gene	1999	240(1)	239-244	
ZDB-PUB-000405-2	10713447	Lee, J.S. and Lee, S.H.	Cloning and characterization of cDNA encoding zebrafish Danio rerio NM23-B gene	Gene	2000	245(1)	75-79	
ZDB-PUB-000622-10	10854777	Slavov, D., Clark, M., and Gardiner, K.	Comparative analysis of the RED1 and RED2 A-to-I RNA editing genes from mammals, pufferfish and zebrafish	Gene	2000	250(1-2)	41-51	
ZDB-PUB-010219-4	11179679	Maul, R.S., Sachi Gerbin, C., and Chang, D.D.	Characterization of mouse epithelial protein lost in neoplasm (EPLIN) and comparison of mammalian and zebrafish EPLIN	Gene	2001	262(1-2)	155-160	
ZDB-PUB-010308-2	11223263	Li, S. and Hunger, S.P.	The DBP transcriptional activation domain is highly homologous to that of HLF and TEF and is not responsible for the tissue type-specific transcriptional activity of DBP	Gene	2001	263(1-2)	239-245	
ZDB-PUB-010604-1	11376943	Futami, K., Komiya, T., Zhang, H., and Okamoto, N.	Differential expression of max and two types of c-myc genes in a tetraploid fish, the common carp (Cyprinus carpio)	Gene	2001	269(1-2)	113-119	
ZDB-PUB-011002-7	11574151	Wang, X., Chu, L.T., He, J., Emelyanov, A., Korzh, V., and Gong, Z.	A novel zebrafish bHLH gene, neurogenin3, is expressed in the hypothalamus	Gene	2001	275(1)	47-55	
ZDB-PUB-021002-1	12234666	Zeng, S. and Gong, Z.	Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary	Gene	2002	294(1-2)	45-53	
ZDB-PUB-021015-18	12354659	Riggio, M., Scudiero, R., Filosa, S., and Parisi, E.	Oestrogen-induced expression of a novel liver-specific aspartic proteinase in Danio rerio (zebrafish)	Gene	2002	295(2)	241-246	
ZDB-PUB-030117-6	12459255	Slavov, D. and Gardiner, K.	Phylogenetic comparison of the pre-mRNA adenosine deaminase ADAR2 genes and transcripts: conservation and diversity in editing site sequence and alternative splicing patterns	Gene	2002	299(1-2)	83-94	
ZDB-PUB-030728-25	11992719	Tallafuss, A. and Bally-Cuif, L.	Formation of the head-trunk boundary in the animal body plan: an evolutionary perspective	Gene	2002	287(1-2)	23-32	
ZDB-PUB-030815-4	12706889	Suh, Y.H., Shin, Y.K., Kook, M.C., Oh, K.I., Park, W.S., Kim, S.H., Lee, I.S., Park, H.J., Huh, T.L., and Park, S.H.	Cloning, genomic organization, alternative transcripts and expression analysis of CD99L2, a novel paralog of human CD99, and identification of evolutionary conserved motifs	Gene	2003	307	63-76	
ZDB-PUB-030902-9	11738815	Maier, S.A., Podemski, L., Graham, S.W., McDermid, H.E., and Locke, J.	Characterization of the adenosine deaminase-related growth factor (ADGF) gene family in Drosophila	Gene	2001	280(1-2)	27-36	
ZDB-PUB-031204-22	11814690	Takezaki, N., Zaleska-Rutczynska, Z., and Figueroa, F.	Sequencing of amphioxus PSMB5/8 gene and phylogenetic position of agnathan sequences	Gene	2002	282(1-2)	179-187	
ZDB-PUB-040322-3	15019997	Koopman, P., Schepers, G., Brenner, S., nd Venkatesh, B.	Origin and diversity of the Sox transcription factor gene family: genome-wide analysis in Fugu rubripes	Gene	2004	328	177-186	
ZDB-PUB-040616-1	15194198	Trachtulec, Z., Vlcek, C., Mihola, O., and Forejt, J.	Comparative analysis of the PDCD2-TBP-PSMB1 region in vertebrates	Gene	2004	335	151-157	
ZDB-PUB-040811-2	15302407	Lewis, R.S., and Ward, A.C.	Conservation, duplication and divergence of the zebrafish stat5 genes	Gene	2004	38(1)	65-74	
ZDB-PUB-040831-1	none	Suzuki, Y., Yoshitomo-Nakagawab, K., Maruyamac, K., Suyamaa, A., and Sugano, S.	Construction and characterization of a full length-enriched and a 5′-end-enriched cDNA library	Gene	1997	200(1-2)	149-156	
ZDB-PUB-041006-10	14697517	Irie-Kushiyama, S., Asano-Miyoshi, M., Suda, T., Abe, K., and Emori, Y.	Identification of 24 genes and two pseudogenes coding for olfactory receptors in Japanese loach, classified into four subfamilies: a putative evolutionary process for fish olfactory receptor genes by comprehensive phylogenetic analysis	Gene	2004	325	123-135	
ZDB-PUB-041012-7	15475161	Tada, M.N., Senzaki, K., Tai, Y., Morishita, H., Tanaka, Y.Z., Murata, Y., Ishii, Y., Asakawa, S., Shimizu, N., Sugino, H., and Yagi, T.	Genomic organization and transcripts of the zebrafish Protocadherin genes	Gene	2004	340(2)	197-211	
ZDB-PUB-041130-15	15087134	Myslinski, E., Krol, A., and Carbon, P.	Characterization of snRNA and snRNA-type genes in the pufferfish Fugu rubripes	Gene	2004	330	149-158	
ZDB-PUB-050221-1	15716008	Santini, S., and Bernardi, G.	Organization and base composition of tilapia Hox genes: implications for the evolution of Hox clusters in fish	Gene	2005	346	51-61	
ZDB-PUB-050607-14	15935575	Bates, M.D., Wells, J.M., and Venkatesh, B.	Comparative genomics of the Hlx homeobox gene and protein: Conservation of structure and expression from fish to mammals	Gene	2005		45-56	
ZDB-PUB-050701-6	15979250	Wang, H., Tan, J.T., Emelyanov, A., Korzh, V., and Gong, Z.	Hepatic and extrahepatic expression of vitellogenin genes in the zebrafish, Danio rerio	Gene	2005	356	91-100	
ZDB-PUB-050701-9	15979825	Gibert, Y., McMillan, D.R., Kayes-Wandover, K., Meyer, A., Begemann, G., and White, P.C.	Analysis of the very large G-protein coupled receptor gene (Vlgr1/Mass1/USH2C) in zebrafish	Gene	2005	353(2)	200-206	
ZDB-PUB-050907-21	16143467	Tse, S.W., Broderick, J.A., Wei, M.L., Luo, M.H., Smith, D., McCaffery, P., Stamm, S., and Andreadis, A.	Identification, expression analysis, genomic organization and cellular location of a novel protein with a RhoGEF domain	Gene	2005	359	63-72	
ZDB-PUB-060210-17	16460888	Matsumoto, Y., Fukamachi, S., Mitani, H., and Kawamura, S.	Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes)	Gene	2006	371(2)	268-278	
ZDB-PUB-060313-1	16500044	Kawahara, R., and Nishida, M.	Multiple occurrences of spiggin genes in sticklebacks	Gene	2006	373	58-66	
ZDB-PUB-061020-29	17027199	Tingaud-Sequeira, A., and Cerda, J.	Phylogenetic relationships and gene expression pattern of three different cathepsin L (Ctsl) isoforms in zebrafish: Ctsla is the putative yolk processing enzyme	Gene	2007	386(1-2)	98-106	
ZDB-PUB-061020-57	17049757	Ivanov, I.P., Pittman, A.J., Chien, C.B., Gesteland, R.F., and Atkins, J.F.	Novel antizyme gene in Danio rerio expressed in brain and retina	Gene	2007	387(1-2)	87-92	
ZDB-PUB-061221-19	7875594	Zhang, H., Okamoto, N., and Ikeda, Y.	Two c-myc genes from a tetraploid fish, the common carp (Cyprinus carpio)	Gene	1995	153(2)	231-236	
ZDB-PUB-061227-2	17126498	Rodriguez-Martin, I., Herrero-Turrion, M.J., Marron Fdez de Velasco, E., Gonzalez-Sarmiento, R., and Rodriguez, R.E.	Characterization of two duplicate zebrafish Cb2-like cannabinoid receptors	Gene	2007	389(1)	36-44	
ZDB-PUB-061229-7	17174483	Tamura, M., Kajikawa, M., and Okada, N.	Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression	Gene	2007	390(1-2)	221-231	
ZDB-PUB-070210-2	17222522	Kawaguchi, M., Yasumasu, S., Hiroi, J., Naruse, K., Suzuki, T., and Iuchi, I.	Analysis of the exon-intron structures of fish, amphibian, bird and mammalian hatching enzyme genes, with special reference to the intron loss evolution of hatching enzyme genes in Teleostei	Gene	2007	392(1-2)	77-88	
ZDB-PUB-070504-18	17459614	Sakata, S.I., Yan, Y., Satou, Y., Momoi, A., Ngo-Hazelett, P., Nozaki, M., Furutani-Seiki, M., Postlethwait, J.H., Yonehara, S., and Sakamaki, K.	Conserved function of caspase-8 in apoptosis during bony fish evolution	Gene	2007	396(1)	134-148	
ZDB-PUB-070907-4	17719728	Yoder, J.A., Orcutt, T.M., Traver, D., and Litman, G.W.	Structural characteristics of zebrafish orthologs of adaptor molecules that associate with transmembrane immune receptors	Gene	2007	401(1-2)	154-164	
ZDB-PUB-071001-2	17888590	Elicker, K.S., and Hutson, L.D.	Genome-wide analysis and expression profiling of the small heat shock proteins in zebrafish	Gene	2007	403(1-2)	60-69	
ZDB-PUB-080209-10	18191918	Salaneck, E., Larsson, T.A., Larson, E.T., and Larhammar, D.	Birth and death of neuropeptide Y receptor genes in relation to the teleost fish tetraploidization	Gene	2008	409(1-2)	61-71	
ZDB-PUB-080527-5	18486365	Angotzi, A.R., Ersland, K.M., Mungpakdee, S., Stefansson, S., and Chourrout, D.	Independent and dynamic reallocation of pitx gene expression during vertebrate evolution, with emphasis on fish pituitary development	Gene	2008	417(1-2)	19-26	
ZDB-PUB-080630-17	18583067	Sun, C., Wu, Z., Jia, F., Wang, Y., Li, T., and Zhao, M.	Identification of zebrafish LPTS: A gene with similarities to human LPTS/PinX1 that inhibits telomerase activity	Gene	2008	420(1)	90-98	
ZDB-PUB-080826-23	18706493	Hashiguchi, Y., and Nishida, M.	Screening the V2R-type putative odorant receptor gene repertoire in bitterling Tanakia lanceolata	Gene	2009	441(1-2)	74-79	
ZDB-PUB-090429-6	19393178	Le Quéré, H., Herpin, A., Huvet, A., Lelong, C., and Favrel, P.	Structural and functional characterizations of an Activin type II receptor orthologue from the pacific oyster Crassostrea gigas	Gene	2009	436(1-2)	101-107	
ZDB-PUB-090616-32	19501636	Lepiller, S., Franche, N., Solary, E., Chluba, J., and Laurens, V.	Comparative analysis of zebrafish nos2a and nos2b genes	Gene	2009	445(1-2)	58-65	
ZDB-PUB-961014-1203	7875601	Vriz, S. and Lovell-Badge, R.	The zebrafish Zf-Sox 19 protein: a novel member of the Sox family which reveals highly conserved motifs outside of the DNA-binding domain	Gene	1995	153	275-276	
ZDB-PUB-970326-8	8707063	Amsterdam, A., Lin, S., Moss, L.G., and Hopkins, N.	Requirements for green fluorescent protein detection in transgenic zebrafish embryos	Gene	1996	\ 	99-103	
ZDB-PUB-980123-4	9409775	Gong, Z.Y., Yan, T., Liao, J., Lee, S.E., He, J.Y., and Hew, C.L.	Rapid identification and isolation of zebrafish cDNA clones	Gene	1997	201	87-98	
ZDB-PUB-010219-12	11168591	Kryukov, G.V. and Gladyshev, V.N.	Selenium metabolism in zebrafish: multiplicity of selenoprotein genes and expression of a protein containing 17 selenocysteine residues	Genes Cells	2000	5(12)	1049-1060	
ZDB-PUB-021015-19	12354100	Ishikawa, T., Hirayama, J., Kobayashi, Y., and Todo, T.	Zebrafish CRY represses transcription mediated by CLOCK-BMAL heterodimer without inhibiting its binding to DNA	Genes Cells	2002	7(10)	1073-1086	
ZDB-PUB-060302-5	16483317	Hanaoka, R., Katayama, S., Dawid, I.B., and Kawahara, A.	Characterization of the heme synthesis enzyme coproporphyrinogen oxidase (CPO) in zebrafish erythrogenesis	Genes Cells	2006	11(3)	293-303	
ZDB-PUB-001221-1	11122377	Tujebajeva, R.M., Ransom, D.G., Harney, J.W., and Berry, M.J.	Expression and characterization of nonmammalian selenoprotein P in the zebrafish, Danio rerio	Genes Cells	2000	5(11)	897-903	
ZDB-PUB-020820-4	12167159	Kobayashi, M., Itoh, K., Suzuki, T., Osanai, H., Nishikawa, K., Katoh, Y., Takagi, Y., and Yamamoto, M.	Identification of the interactive interface and phylogenic conservation of the Nrf2-Keap1 system	Genes Cells	2002	7(8)	807-820	
ZDB-PUB-021015-2	12296827	Maegawa, S., Yamashita, M., Yasuda, K., and Inoue, K.	Zebrafish DAZ-like protein controls translation via the sequence 'GUUC'	Genes Cells	2002	7(9)	971-984	
ZDB-PUB-040520-3	15147276	Daiyasu, H., Ishikawa, T., Kuma, K., Iwai, S., Todo, T., and Toh, H.	Identification of cryptochrome DASH from vertebrates	Genes Cells	2004	9(5)	479-495	
ZDB-PUB-001101-9	10971654	Kobayashi, Y., Ishikawa, T., Hirayama, J., Daiyasu, H., Kanai, S., Toh, H., Fukuda, I., Tsujimura, T., Terada, N., Kamei, Y., Yuba, S., Iwai, S., and Todo, T.	Molecular analysis of zebrafish photolyase/cryptochrome family: two types of cryptochromes present in zebrafish	Genes Cells	2000	5(9)	725-738	
ZDB-PUB-020402-2	11895477	Suzuki, H., Jin, Y., Otani, H., Yasuda, K., and Inoue, K.	Regulation of alternative splicing of alpha-actinin transcript by Bruno-like proteins	Genes Cells	2002	7(2)	133-141	
ZDB-PUB-000824-5	10660676	Rubinstein, A.L., Lee, D., Luo, R., Henion, P.D., and Halpern, M.E.	Genes dependent on zebrafish cyclops function identified by AFLP differential gene expression screen	Genesis	2000	26(1)	86-97	
ZDB-PUB-000825-4	10890978	Yamamoto, A., Kemp, C., Bachiller, D., Geissert, D., and De Robertis, E.M.	Mouse paraxial protocadherin is expressed in trunk mesoderm and is not essential for mouse development	Genesis	2000	27(2)	49-57	
ZDB-PUB-001213-4	11064421	Tsang, M., Kim, R., De Caestecker, M.P., Kudoh, T., Roberts, A.B., and Dawid, I.B.	Zebrafish nma is involved in TGFb family signaling	Genesis	2000	28(2)	47-57	
ZDB-PUB-010220-9	11135459	Chen, Y.-H., Lee, W.-C., Liu, C.-F., and Tsai, H.-J.	Molecular structure, dynamic expression, and promoter analysis of zebrafish (Danio rerio) myf-5 gene	Genesis	2001	29(1)	22-35	
ZDB-PUB-010807-12	11477693	Wallace, K.N., Yusuff, S., Sonntag, J.M., Chin, A.J., and Pack, M.	Zebrafish hhex regulates liver development and digestive organ chirality	Genesis	2001		1-143	
ZDB-PUB-010807-15	11477690	Scholpp, S. and Brand, M.	Morpholino-induced knockdown of zebrafish engrailed genes eng2 and eng3 reveals redundant and unique functions in midbrain-hindbrain boundary development	Genesis	2001	30(3)	129-133	
ZDB-PUB-010807-7	11477707	Wang, G., Huang, H., Dai, R., Lee, K.Y., Lin, S., and Mivechi, N.F.	Suppression of heat shock transcription factor HSF1 in zebrafish causes heat-induced apoptosis	Genesis	2001	30(3)	195-197	
ZDB-PUB-010808-1	11477704	Miller, C.T. and Kimmel, C.B.	Morpholino phenocopies of endothelin 1 (sucker) and other anterior arch class mutations	Genesis	2001	30(3)	186-187	
ZDB-PUB-010822-4	11536427	Mhanni, A.A., Yoder, J.A., Dubesky, C., and McGowan, R.A.	Cloning and sequence analysis of a zebrafish cDNA encoding DNA (cytosine-5)-methyltransferase-1	Genesis	2001	30	213-219	
ZDB-PUB-010917-4	11477698	Imai,Y. and Talbot, W.S.	Morpholino phenocopies of the bmp2b/swirl and bmp7/snailhouse mutations	Genesis	2001	30(3)	160-163	
ZDB-PUB-020218-4	11835671	Tawk, M., Tuil, D., Torrente, Y., Vriz, S., and Paulin, D.	High-efficiency gene transfer into adult fish: A new tool to study fin regeneration	Genesis	2002	32(1)	27-31	
ZDB-PUB-021105-6	12395387	Hamaoka, T., Takechi, M., Chinen, A., Nishiwaki, Y., and Kawamura, S.	Visualization of rod photoreceptor development using GFP-transgenic zebrafish	Genesis	2002	34(3)	215-220	
ZDB-PUB-031105-3	14595833	Shentu, H., Wen, H.-J., Mour Her, G., Huang, C.-J., Wu, J.-L., and Hwang, S.-P.	Proximal upstream region of zebrafish bone morphogenetic protein 4 promoter directs heart expression of green fluorescent protein	Genesis	2003	37(3)	103-112	
ZDB-PUB-040216-28	11477706	Lele, Z., Bakkers, J., and Hammerschmidt, M.	Morpholino phenocopies of the swirl, snailhouse, somitabun, minifin, silberblick, and pipetail mutations	Genesis	2001	30(3)	190-194	
ZDB-PUB-040204-1	14755801	Her, G.M., Chiang, C.C., and Wu, J.L.	Zebrafish intestinal fatty acid binding protein (I-FABP) gene promoter drives gut-specific expression in stable transgenic fish	Genesis	2004	38(1)	26-31	
ZDB-PUB-040804-8	15286994	Clark, K.J., Geurts, A.M., Bell, J.B., and Hackett, P.B.	Transposon vectors for gene-trap insertional mutagenesis in vertebrates	Genesis	2004	39(4)	225-233	
ZDB-PUB-050113-7	15645439	Zilinski, C.A., Shah, R., Lane, M.E., and Jamrich, M.	Modulation of zebrafish pitx3 expression in the primordia of the pituitary, lens, olfactory epithelium and cranial ganglia by hedgehog and nodal signaling	Genesis	2005	41(1)	33-40	
ZDB-PUB-080218-3	18196596	Kamachi, Y., Okuda, Y., and Kondoh, H.	Quantitative assessment of the knockdown efficiency of morpholino antisense oligonucleotides in zebrafish embryos using a luciferase assay	Genesis	2008	46(1)	1-7	
ZDB-PUB-080915-11	18781646	Olden, T., Akhtar, T., Beckman, S.A., and Wallace, K.N.	Differentiation of the zebrafish enteric nervous system and intestinal smooth muscle	Genesis	2008	46(9)	484-498	
ZDB-PUB-090807-4	19644983	Tomasini, A.J., Schuler, A.D., Zebala, J.A., and Mayer, A.N.	Photomorphs: A novel light-activated reagent for controlling gene expression in zebrafish	Genesis	2009	47(11)	736-743	
ZDB-PUB-091016-5	11477697	Araki, I., and Brand, M.	Morpholino-induced knockdown of fgf8 efficiently phenocopies the acerebellar (ace) phenotype	Genesis	2001	30(3)	157-159	
ZDB-PUB-091120-11	19882667	Urbanski, W.M., and Condie, B.G.	Textpresso site-specific recombinases: A text-mining server for the recombinase literature including Cre mice and conditional alleles	Genesis	2009	47(12)	842-846	
ZDB-PUB-001213-5	11064422	Kawahara, A., Wilm, T., Solnica-Krezel, L., and Dawid, I.B.	Functional interaction of vega2 and goosecoid homeobox genes in zebrafish	Genesis	2000	28(2)	58-67	
ZDB-PUB-010807-10	11477696	Draper, B.W., Morcos, P.A., and Kimmel, C.B.	Inhibition of zebrafish fgf8 pre-mRNA splicing with morpholino oligos: A quantifiable method for gene knockdown	Genesis	2001	30(3)	154-156	
ZDB-PUB-010807-13	11477692	Yee, N.S., Yusuff, S., and Pack, M.	Zebrafish pdx1 morphant displays defects in pancreas development and digestive organ chirality, and potentially identifies a multipotent pancreas progenitor cell	Genesis	2001	30(3)	137-140	
ZDB-PUB-010807-16	11477686	Sumanas, S., Kim, H.J., Hermanson, S., and Ekker, S.C.	Zebrafish frizzled-2 morphant displays defects in body axis elongation	Genesis	2001	30(3)	114-118	
ZDB-PUB-010807-8	11477703	Braat, A.K., van De Water, S., Korving, J., and Zivkovic, D.	A zebrafish vasa morphant abolishes Vasa protein but does not affect the establishment of the germline	Genesis	2001	30(3)	183-185	
ZDB-PUB-010905-6	11477702	Agathon, A., Thisse, B., and Thisse, C.	Morpholino knock-down of antivin1 and antivin2 upregulates nodal signaling	Genesis	2001	30(3)	178-182	
ZDB-PUB-010917-5	11477701	Feldman, B. and Stemple, D.L.	Morpholino phenocopies of sqt, oep, and ntl mutations	Genesis	2001	30(3)	175-177	
ZDB-PUB-011025-2	11668671	Sussman, R.	Direct DNA delivery into zebrafish embryos employing tissue culture techniques	Genesis	2001	31(1)	1-5	
ZDB-PUB-020108-1	11477705	Dutton, K.A., Dutton, J., Pauliny, A., and Kelsh, R.N.	A morpholino phenocopy of the colourless mutant phenotype	Genesis	2001	30	188-189	
ZDB-PUB-030502-1	11477699	Etheridge, L.A., Wu, T., Liang, J.O., Ekker, S.C., and Halpern, M.E.	Floor plate develops upon depletion of tiggy-winkle and sonic hedgehog	Genesis	2001	30(3)	164-169	
ZDB-PUB-041216-8	15593328	Manning, A.G., Crawford, B.D., Waskiewicz, A.J., and Pilgrim, D.B.	UNC-119 homolog required for normal development of the zebrafish nervous system	Genesis	2004	40(4)	223-230	
ZDB-PUB-050920-15	11064424	Motoike, T., Loughna, S., Perens, E., Roman, B.L., Liao, W., Chau, T.C., Richardson, C.D., Kawate, T., Kuno, J., Weinstein, B.M., Stainier, D.Y., and Sato, T.N.	Universal GFP reporter for the study of vascular development	Genesis	2000	28(2)	75-81	
ZDB-PUB-061227-10	17133414	Inbal, A., Topczewski, J., and Solnica-Krezel, L.	Targeted gene expression in the zebrafish prechordal plate	Genesis	2006	44(12)	584-588	
ZDB-PUB-070726-1	14666513	Yamakoshi, K., and Shimoda, N.	De novo DNA methylation at the CpG island of the zebrafish no tail gene	Genesis	2003	37(4)	195-202	
ZDB-PUB-080922-22	18802959	Chu, Y., Senghaas, N., Köster, R.W., Wurst, W., and Kühn, R.	Novel caspase-suicide proteins for tamoxifen-inducible apoptosis	Genesis	2008	46(10)	530-536	
ZDB-PUB-090106-14	19101983	Tong, S.K., Mouriec, K., Kuo, M.W., Pellegrini, E., Gueguen, M.M., Brion, F., Kah, O., and Chung, B.C.	A cyp19a1b-gfp (aromatase B) transgenic zebrafish line that expresses GFP in radial glial cells	Genesis	2009	47(2)	67-73	
ZDB-PUB-090511-2	19415631	Boniface, E.J., Lu, J., Victoroff, T., Zhu, M., and Chen, W.	FlEx-based transgenic reporter lines for visualization of Cre and Flp activity in live zebrafish	Genesis	2009	47(7)	484-491	
ZDB-PUB-001026-7	10992326	Sepich, D.S., Myers, D.C., Short, R., Topczewski, J., Marlow, F., and Solnica-Krezel, L.	Role of the zebrafish trilobite locus in gastrulation movements of convergence and extension	Genesis	2000	27(4)	159-173	
ZDB-PUB-010423-5	11309848	Jessen, J.R., Jessen, T.N., Vogel, S.S., and Lin, S.	Concurrent expression of recombination activating genes 1 and 2 in zebrafish olfactory sensory neurons	Genesis	2001	29(4)	156-162	
ZDB-PUB-010807-11	11477695	Cui, Z., Clark, K.J., Kaufman, C.D., and Hackett, P.B.	Inhibition of skiA and skiB gene expression ventralizes zebrafish embryos	Genesis	2001	30(3)	149-153	
ZDB-PUB-010807-14	11477691	Huang, H., Liu, N., and Lin, S.	Pdx-1 knockdown reduces insulin promoter activity in zebrafish	Genesis	2001	30(3)	134-136	
ZDB-PUB-010807-9	11477700	Bingham, S., Nasevicius, A., Ekker, S.C., and Chandrasekhar, A.	Sonic hedgehog and tiggy-winkle hedgehog cooperatively induce zebrafish branchiomotor neurons	Genesis	2001	30(3)	170-174	
ZDB-PUB-010917-3	11477688	Klee, E.W., Ekker, S.C., and Ellis, L.B.M.	Target selection for Danio rerio functional genomics	Genesis	2001	30(3)	123-125	
ZDB-PUB-020724-2	11477689	Karlen, S. and Rebagliati, M.	A morpholino phenocopy of the cyclops mutation	Genesis	2001	30(3)	126-128	
ZDB-PUB-021105-5	12395384	Downes, G.B., Waterbury, J.A., and Granato, M.	Rapid in vivo labeling of identified zebrafish neurons	Genesis	2002	34(3)	196-202	
ZDB-PUB-041228-1	none	Ekker, S.C., and Larson, J.D.	Morphant Technology in Model Developmental Systems	Genesis	2001	30	89-93	
ZDB-PUB-041216-9	15593329	Wiellette, E., Grinblat, Y., Austen, M., Hirsinger, E., Amsterdam, A., Walker, C., Westerfield, M., and Sive, H.	Combined haploid and insertional mutation screen in the zebrafish	Genesis	2004	40(4)	231-240	
ZDB-PUB-060306-6	16496337	Sato, T., Takahoko, M., and Okamoto, H.	HuC:Kaede, a useful tool to label neural morphologies in networks in vivo	Genesis	2006	44(3)	136-142	
ZDB-PUB-071023-8	17941043	Provost, E., Rhee, J., and Leach, S.D.	Viral 2A peptides allow expression of multiple proteins from a single ORF in transgenic zebrafish embryos	Genesis	2007	45(10)	625-629	
ZDB-PUB-080311-11	18327772	Swindell, E.C., Zilinski, C.A., Hashimoto, R., Shah, R., Lane, M.E., and Jamrich, M.	Regulation and function of foxe3 during early zebrafish development	Genesis	2008	46(3)	177-183	
ZDB-PUB-091221-23	20014342	Mazmanian, G., Kovshilovsky, M., Yen, D., Mohanty, A., Mohanty, S., Nee, A., and Nissen, R.M.	The zebrafish dyrk1b gene is important for endoderm formation	Genesis	2010	48(1)	20-30	
ZDB-PUB-100126-13	20094996	Lister, J.A.	Transgene excision in zebrafish using the phiC31 integrase	Genesis	2010	48(2)	137-143	
ZDB-PUB-100211-32	20146355	Komoike, Y., Fujii, K., Nishimura, A., Hiraki, Y., Hayashidani, M., Shimojima, K., Nishizawa, T., Higashi, K., Yasukawa, K., Saitsu, H., Miyake, N., Mizuguchi, T., Matsumoto, N., Osawa, M., Kohno, Y., Higashinakagawa, T., and Yamamoto, T.	Zebrafish gene knockdowns imply roles for human YWHAG in infantile spasms and cardiomegaly	Genesis	2010	\ 	\ 	
ZDB-PUB-961014-378	1628821	Grunwald, D.J. and Streisinger, G.	Induction of recessive lethal mutations in zebrafish with ultraviolet light	Genet. Res.	1992	59	93-101	
ZDB-PUB-961014-379	1628817	Grunwald, D.J. and Streisinger, G.	Induction of recessive lethal and specific locus mutations in the zebrafish with ethyl nitrosourea	Genet. Res.	1992	59	103-116	
ZDB-PUB-961014-619	1964924	Kolesnikov, V.A., Alimov, A.A., Barmintsev, V.A., Benyumov, A.O., Zelenina, I.A., Krasnov, A.M., Dzhabur, R., and Zelenin, A.V.	High velocity mechanical injection of foreign DNA into fish oocytes	Genetika	1990	26(12)	2122-2126	
ZDB-PUB-091023-39	19824538	Yang, S.L., Yan, S., Niu, R.L., and Lin, X.K.	VEGF gene silencing by cytomegalovirus promoter driven shRNA expression vector results in vascular development defects in zebrafish	Genetika	2009	45(9)	1187-1193	
ZDB-PUB-000126-7	10613846	Nechiporuk, A., Finney, J.E., Keating, M.T., and Johnson, S.L.	Assessment of polymorphism in zebrafish mapping strains	Genome Res.	1999	9(12)	1231-1238	
ZDB-PUB-001221-7	11116087	Ton, C., Hwang, D.M., Dempsey, A.A., Tang, H.C., Yoon, J., Lim, M., Mably, J.D., Fishman, M.C., and Liew, C.C.	Identification, characterization, and mapping of expressed sequence tags from an embryonic zebrafish heart cDNA library	Genome Res.	2000	10(12)	1915-1927	
ZDB-PUB-010705-10	11435403	Rajarao, S.J., Canfield, V.A., Mohideen, M.A., Yan, Y.-L., Postlethwait, J.H., Cheng, K.C., and Levenson, R.	The repertoire of Na,K-ATPase alpha and beta subunit genes expressed in the zebrafish, Danio rerio	Genome Res.	2001	11(7)	1211-1220	
ZDB-PUB-011214-7	11731487	Kudoh, T., Tsang, M., Hukriede, N.A., Chen, X., Dedekian, M., Clarke, C.J., Kiang, A., Schultz, S., Epstein, J.A., Toyama, R., and Dawid, I.B.	A gene expression screen in zebrafish embryogenesis	Genome Res.	2001	11(12)	1979-1987	
ZDB-PUB-021213-2	12466297	Stickney, H.L., Schmutz, J., Woods, I.G., Holtzer, C.C., Dickson, M.C., Kelly, P.D., Myers, R.M., and Talbot, W.S.	Rapid mapping of zebrafish mutations with SNPs and oligonucleotide microarrays	Genome Res.	2002	12(12)	1929-1934	
ZDB-PUB-030408-7	12670995	Ghanem, N., Jarinova, O., Amores, A., Long, Q., Hatch, G., Park, B.K., Rubenstein, J.L., and Ekker, M.	Regulatory roles of conserved intergenic domains in vertebrate dlx bigene clusters	Genome Res.	2003	13(4)	533-543	
ZDB-PUB-040109-11	14707165	Amores, A., Suzuki, T., Yan, Y.-L., Pomeroy, J., Singer, A., Amemiya, C., and Postlethwait, J.H.	Developmental roles of pufferfish hox clusters and genome evolution in ray-fin fish	Genome Res.	2004	14(1)	1-10	
ZDB-PUB-041216-4	15590939	Paulsen, M., Khare, T., Burgard, C., Tierling, S., and Walter, J.	Evolution of the Beckwith-Wiedemann syndrome region in vertebrates	Genome Res.	2005	15(1)	146-153	
ZDB-PUB-050727-5	16024824	de la Calle-Mustienes, E., Feijoo, C.G., Manzanares, M., Tena, J.J., Rodriguez-Seguel, E., Leticia, A., Allende, M.L., and Gomez-Skarmeta, J.L.	A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts	Genome Res.	2005	15(8)	1061-1072	
ZDB-PUB-051214-24	16339365	Crollius, H.R., and Weissenbach, J.	Fish genomics and biology	Genome Res.	2005	15(12)	1675-1682	
ZDB-PUB-071210-22	15197168	Loh, Y.H., Christoffels, A., Brenner, S., Hunziker, W., and Venkatesh, B.	Extensive Expansion of the Claudin Gene Family in the Teleost Fish, Fugu rubripes	Genome Res.	2004	14(7)	1248-1257	
ZDB-PUB-080306-18	18296487	Bushell, K.M., Söllner, C., Schuster-Boeckler, B., Bateman, A., and Wright, G.J.	Large-scale screening for novel low-affinity extracellular protein interactions	Genome Res.	2008	18(4)	622-630	
ZDB-PUB-990405-11	10022976	Davidson, A.J., Postlethwait, J.H., Yan, Y.-L., Beier, D.R., Van Doren, C., Förnzler, D., Celeste, A.J., Crosier, K.E., and Crosier, P.S.	Isolation of zebrafish gdf7 and comparative genetic mapping of genes belonging to the growth/differentiation factor 5, 6, 7 subgroup of the TGF-beta superfamily	Genome Res.	1999	9	121-129	
ZDB-PUB-100119-11	20075146	Narlikar, L., Sakabe, N.J., Blanski, A.A., Arimura, F.E., Westlund, J.M., Nobrega, M.A., and Ovcharenko, I.	Genome-wide discovery of human heart enhancers	Genome Res.	2010	20(3)	381-392	
ZDB-PUB-001017-3	10984453	Barbazuk, W.B., Korf, I., Kadavi, C., Heyen, J., Tate, S., Wun, E., Bedell, J.A., McPherson, J.D., and Johnson, S.L.	The syntenic relationship of the zebrafish and human genomes	Genome Res.	2000	10(9)	1351-1358	
ZDB-PUB-001221-8	11116086	Woods, I.G., Kelly, P.D., Chu, F., Ngo-Hazelett, P., Yan, Y.-L., Huang, H., Postlethwait, J.H., and Talbot, W.S.	A comparative map of the zebrafish genome	Genome Res.	2000	10(12)	1903-1914	
ZDB-PUB-010912-5	11544204	Clark, M.D., Hennig, S., Herwig, R., Clifton, S.W., Marra, M.A., Lehrach, H., Johnson, S.L., and Group, T.W.	An oligonucleotide fingerprint normalized and expressed sequence tag characterized zebrafish cDNA library	Genome Res.	2001	11(9)	1594-1602	
ZDB-PUB-011031-13	11591638	Cai, W.W., Chen, R., Gibbs, R.A., and Bradley, A.	A clone-array pooled shotgun strategy for sequencing large genomes	Genome Res.	2001	11(10)	1619-1623	
ZDB-PUB-011109-6	11691861	Broughton, R.E., Milam, J.E., and Roe, B.A.	The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA	Genome Res.	2001	11(11)	1958-1967	
ZDB-PUB-020403-19	11827951	Ogiwara, I., Miya, M., Ohshima, K., and Okada, N.	V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit	Genome Res.	2002	12(2)	316-324	
ZDB-PUB-030305-1	12618368	Taylor, J.S., Braasch, I., Frickey, T., Meyer, A., and van de Peer, Yves	Genome duplication, a trait shared by 22,000 species of ray-finned fish	Genome Res.	2003	13(3)	382-390	
ZDB-PUB-030520-1	12743018	Winkler, C., Schäfer, M., Duschl, J., Schartl, M., and Volff, J.-N.	Functional divergence of two zebrafish midkine growth factors following fish-specific gene duplication	Genome Res.	2003	13	1067-1081	
ZDB-PUB-030715-5	12805276	Bouneau, L., Fischer, C., Ozouf-Costaz, C., Froschauer, A., Jaillon, O., Coutanceau, J.-P., Korting, C., Weissenbach, J., Bernot, A., and Volff, J.-N.	An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis	Genome Res.	2003	13(7)	1686-1695	
ZDB-PUB-030716-13	12799348	Santini, S., Boore, J.L., and Meyer, A.	Evolutionary conservation of regulatory elements in vertebrate hox gene clusters	Genome Res.	2003	13(6)	1111-1122	
ZDB-PUB-040415-7	15078856	Naruse, K., Tanaka, M., Mita, K., Shima, A., Postlethwait, J., and Mitani, H.	A Medaka Gene Map: The Trace of Ancestral Vertebrate Proto-Chromosomes Revealed by Comparative Gene Mapping	Genome Res.	2004	14(5)	820-828	
ZDB-PUB-040505-2	15123595	Eyras, E., Caccamo, M., Curwen, V., and Clamp, M.	ESTGenes: Alternative Splicing From ESTs in Ensembl	Genome Res.	2004	14(5)	976-987	
ZDB-PUB-060323-11	16533913	Guryev, V., Koudijs, M.J., Berezikov, E., Johnson, S.L., Plasterk, R.H., van Eeden, F.J., and Cuppen, E.	Genetic variation in the zebrafish	Genome Res.	2006	16(4)	491-497	
ZDB-PUB-061227-27	17151346	Ichiyanagi, K., Nakajima, R., Kajikawa, M., and Okada, N.	Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts	Genome Res.	2007	17(1)	33-41	
ZDB-PUB-080309-2	17989246	Siepel, A., Diekhans, M., Brejová, B., Langton, L., Stevens, M., Comstock, C.L., Davis, C., Ewing, B., Oommen, S., Lau, C., Yu, H.C., Li, J., Roe, B.A., Green, P., Gerhard, D.S., Temple, G., Haussler, D., and Brent, M.R.	Targeted discovery of novel human exons by comparative genomics	Genome Res.	2007	17(12)	1763-1773	
ZDB-PUB-090518-14	19439512	Kassahn, K.S., Dang, V.T., Wilkins, S.J., Perkins, A.C., and Ragan, M.A.	Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates	Genome Res.	2009	19(8)	1404-1418	
ZDB-PUB-090526-36	19465509	Catchen, J.M., Conery, J.S., and Postlethwait, J.H.	Automated identification of conserved synteny after whole genome duplication	Genome Res.	2009	19(8)	1497-1505	
ZDB-PUB-980225-7	9445483	Beier, D.R.	Zebrafish: Genomics on the fast track	Genome Res.	1998	8	9-17	
ZDB-PUB-990507-7	10207156	Gates, M.A., Kim, L., Egan, E.S., Cardozo, T., Sirotkin, H.I., Dougan, S.T., Lashkari, D., Abagyan, R., Schier, A.F., and Talbot, W.S.	A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences	Genome Res.	1999	9(4)	334-347	
ZDB-PUB-000504-1	10779498	Kelly, P.D., Chu, F., Woods, I.G., Ngo-Hazelett, P., Cardozo, T., Huang, H., Kimm, F., Liao, L., Yan, Y.L., Zhou, Y., Johnson, S.L., Abagyan, R., Schier, A.F., Postlethwait, J.H., and Talbot, W.S.	Genetic linkage mapping of zebrafish genes and ESTs	Genome Res.	2000	10(4)	558-567	
ZDB-PUB-001221-9	11116085	Postlethwait, J.H., Woods, I.G., Ngo-Hazelett, P., Yan, Y.-L., Kelly, P.D., Chu, F., Huang, H., Hill-Force, A., and Talbot, W.S.	Zebrafish comparative genomics and the origins of vertebrate chromosomes	Genome Res.	2000	10(12)	1890-1902	
ZDB-PUB-010511-3	11337474	Robinson-Rechavi, M., Marchand, O., Escriva, H., Bardet, P.L., Zelus, D., Hughes, S., and Laudet, V.	Euteleost fish genomes are characterized by expansion of gene families	Genome Res.	2001	11(5)	781-788	
ZDB-PUB-011010-2	11591639	Serluca, F.C., Sidow, A., Mably, J.D., and Fishman, MC.	Partitioning of tissue expression accompanies multiple duplications of the Na+/K+ ATPase alpha subunit gene	Genome Res.	2001	11(10)	1625-1631	
ZDB-PUB-011214-6	11731504	Hukriede, N., Fisher, D., Epstein, J., Joly, L., Tellis, P., Zhou, Y., Barbazuk, B., Cox, K., Fenton-Noriega, L., Hersey, C., Miles, J., Sheng, X., Song, A., Waterman, R., Johnson, S.L., Dawid, I.B., Chevrette, M., Zon, L.I., McPherson, J., and Ekker, M.	The LN54 radiation hybrid map of zebrafish expressed sequences	Genome Res.	2001	11(12)	2127-2132	
ZDB-PUB-020514-2	11997341	Gottgens, B., Barton, L.M., Chapman, M.A., Sinclair, A.M., Knudsen, B., Grafham, D., Gilbert, J.G., Rogers, J., Bentley, D.R., and Green, A.R.	Transcriptional regulation of the stem cell leukemia gene (SCL) - comparative analysis of five vertebrate SCL loci	Genome Res.	2002	12(5)	749-759	
ZDB-PUB-020604-1	12045154	Coimbra, R.S., Weil, D., Brottier, P., Blanchard, S., Levi, M., Hardelin, J.-P., Weissenbach, J., and Petit, C.	A subtracted cDNA library from the zebrafish (Danio rerio) embryonic inner ear	Genome Res.	2002	12(6)	1007-1011	
ZDB-PUB-030305-2	12618376	Lo, J., Lee, S., Xu, M., Liu, F., Ruan, H., Eun, A., He, Y., Ma, W., Wang, W., Wen, Z., and Peng, J.	15,000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis	Genome Res.	2003	13(3)	455-466	
ZDB-PUB-030627-1	12799347	Farber, S.A., De Rose, R.A., Olson, E.S., and Halpern, M.E.	The zebrafish annexin gene family	Genome Res.	2003	13(6)	1082-1096	
ZDB-PUB-031119-10	14613981	Wienholds, E., van Eeden, F., Kosters, M., Mudde, J., Plasterk, R.H., and Cuppen, E.	Efficient target-selected mutagenesis in zebrafish	Genome Res.	2003	13	2700-2707	
ZDB-PUB-040109-10	14707166	Chiu, C.H., Dewar, K., Wagner, G.P., Takahashi, K., Ruddle, F., Ledje, C., Bartsch, P., Scemama, J.L., Stellwag, E., Fried, C., Prohaska, S.J., Stadler, P.F., and Amemiya, C.T.	Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution	Genome Res.	2004	14(1)	11-17	
ZDB-PUB-040303-1	14993203	Noonan, J.P., Grimwood, J., Schmutz, J., Dickson, M., and Myers, R.M.	Gene conversion and the evolution of protocadherin gene cluster diversity.	Genome Res.	2004	14(3)	354-366	
ZDB-PUB-040503-1	14718378	Dickmeis, T., Plessy, C., Rastegar, S., Aanstad, P., Herwig, R., Chalmel, F., Fischer, N., and Strähle, U.	Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo	Genome Res.	2004	14(2)	228-238	
ZDB-PUB-040505-3	15123590	Curwen, V., Eyras, E., Andrews, T.D., Clarke, L., Mongin, E., Searle, S.M., and Clamp, M.	The ensembl automatic gene annotation system	Genome Res.	2004	14(5)	942-950	
ZDB-PUB-041122-3	15545497	Noonan, J.P., Grimwood, J., Danke, J., Schmutz, J., Dickson, M., Amemiya, C.T., and Myers, R.M.	Coelacanth genome sequence reveals the evolutionary history of vertebrate genes	Genome Res.	2004	14(12)	2397-2405	
ZDB-PUB-050823-6	16109975	Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S.	The zebrafish gene map defines ancestral vertebrate chromosomes	Genome Res.	2005	15(9)	1307-1314	
ZDB-PUB-060531-12	16717141	Nishihara, H., Smit, A.F., and Okada, N.	Functional noncoding sequences derived from SINEs in the mammalian genome	Genome Res.	2006	16(7)	864-874	
ZDB-PUB-060706-1	16533910	McEwen, G.K., Woolfe, A., Goode, D., Vavouri, T., Callaway, H., and Elgar, G.	Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis	Genome Res.	2006	16(4)	451-465	
ZDB-PUB-070330-45	17387144	Kikuta, H., Laplante, M., Navratilova, P., Komisarczuk, A.Z., Engstrom, P.G., Fredman, D., Akalin, A., Caccamo, M., Sealy, I., Howe, K., Ghislain, J., Pezeron, G., Mourrain, P., Ellingsen, S., Oates, A.C., Thisse, C., Thisse, B., Foucher, I., Adolf, B., Geling, A., Lenhard, B., and Becker, T.S.	Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates	Genome Res.	2007	17(5)	545-555	
ZDB-PUB-070827-27	17717047	Saraiva, L.R., and Korsching, S.I.	A novel olfactory receptor gene family in teleost fish	Genome Res.	2007	17(10)	1448-1457	
ZDB-PUB-071219-7	18071029	McGaughey, D.M., Vinton, R.M., Huynh, J., Al-Saif, A., Beer, M.A., and McCallion, A.S.	Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b	Genome Res.	2008	18(2)	252-260	
ZDB-PUB-081218-7	19064678	Friedrichs, F., Zugck, C., Rauch, G.J., Ivandic, B., Weichenhan, D., Muller-Bardorff, M., Meder, B., El Mokhtari, N.E., Regitz-Zagrosek, V., Hetzer, R., Schafer, A., Schreiber, S., Chen, J., Neuhaus, I., Ji, R., Siemers, N.O., Frey, N., Rottbauer, W., Katus, H.A., and Stoll, M.	HBEGF, SRA1, and IK: Three co-segregating genes as determinants of cardiomyopathy	Genome Res.	2009	19(3)	395-403	
ZDB-PUB-090526-1	18463305	Park, J.I., Semyonov, J., Chang, C.L., Yi, W., Warren, W., and Hsu, S.Y.	Origin of INSL3-mediated testicular descent in therian mammals	Genome Res.	2008	18(6)	974-985	
ZDB-PUB-090828-21	19704032	Hufton, A.L., Mathia, S., Braun, H., Georgi, U., Lehrach, H., Vingron, M., Poustka, A.J., and Panopoulou, G.	Deeply conserved chordate non-coding sequences preserve genome synteny but do not drive gene duplicate retention	Genome Res.	2009	19(11)	2036-2051	
ZDB-PUB-961014-622	none	Konstantinov, A.S. and YuPelipenko, M.	Effect of intrinsic species-specific exometabolites on the growth and physiological state of fish	Gidrobiol. Zh.	1987	23	56-61	
ZDB-PUB-070625-2	17541818	Souza, A.R., Kozlowski, E.O., Cerqueira, V.R., Castelo-Branco, M.T., Costa, M.L., and Pavão, M.S.	Chondroitin sulfate and keratan sulfate are the major glycosaminoglycans present in the adult zebrafish Danio rerio (Chordata-Cyprinidae)	Glycoconj. J.	2007	24(9)	521-530	
ZDB-PUB-080908-3	18763034	Ahmed, H., Du, S.J., and Vasta, G.R.	Knockdown of a galectin-1-like protein in zebrafish (Danio rerio) causes defects in skeletal muscle development	Glycoconj. J.	2009	26(3)	277-283	
ZDB-PUB-080915-4	18777207	Zhang, F., Zhang, Z., Thistle, R., McKeen, L., Hosoyama, S., Toida, T., Linhardt, R.J., and Page-McCaw, P.	Structural characterization of glycosaminoglycans from zebrafish in different ages	Glycoconj. J.	2009	26(2)	211-218	
ZDB-PUB-030919-10	12975611	Filmus, J.	The contribution of in vivo manipulation of gene expression to the understanding of the function of glypicans	Glycoconj. J.	2002	19(4-5)	319-323	
ZDB-PUB-050308-9	15750792	Vasta, G.R., Ahmed, H., Du, S., and Henrikson, D.	Galectins in teleost fish: Zebrafish (Danio rerio) as a model species to address their biological roles in development and innate immunity	Glycoconj. J.	2004	21(8-9)	503-521	
ZDB-PUB-050506-12	15864431	Takemoto, T., Natsuka, S., Nakakita, S., and Hase, S.	Expression of complex-type N-glycans in developmental periods of zebrafish embryo	Glycoconj. J.	2005	22(1-2)	21-26	
ZDB-PUB-080722-33	18642128	Chang, L.Y., Mir, A.M., Thisse, C., Guérardel, Y., Delannoy, P., Thisse, B., and Harduin-Lepers, A.	Molecular cloning and characterization of the expression pattern of the zebrafish alpha2, 8-sialyltransferases (ST8Sia) in the developing nervous system	Glycoconj. J.	2009	26(3)	263-275	
ZDB-PUB-080826-22	18704683	Chang, L.Y., Harduin-Lepers, A., Kitajima, K., Sato, C., Huang, C.J., Khoo, K.H., and Guérardel, Y.	Developmental regulation of oligosialylation in zebrafish	Glycoconj. J.	2009	26(3)	247-261	
ZDB-PUB-970102-14	1346970	Mahon, K.A. and Dawid, I.B.	Development shows some backbone	HFSP Workshop on Genetic Control of Vertebrate Development cosponsored by the Human Frontier Science Program, European Science Foundation, and European Molecular Biology Organization, Les Diablerets, Switzerland, May 26-30, 1991. New. Biol.	1992	4(1)	36-41	
ZDB-PUB-070827-14	17709218	Ou, H.C., Raible, D.W., and Rubel, E.W.	Cisplatin-induced hair cell loss in zebrafish (Danio rerio) lateral line	Hearing Research	2007	233(1-2)	46-53	
ZDB-PUB-090319-6	19285126	Owens, K.N., Coffin, A.B., Hong, L.S., Bennett, K.O., Rubel, E.W., and Raible, D.W.	Response of mechanosensory hair cells of the zebrafish lateral line to aminoglycosides reveals distinct cell death pathways	Hearing Research	2009	253(1-2)	32-41	
ZDB-PUB-100112-27	20060460	Van Trump, W.J., Coombs, S., Duncan, K., and McHenry, M.J.	Gentamicin is ototoxic to all hair cells in the fish lateral line system	Hearing Research	2010	261(1-2)	42-50	
ZDB-PUB-000505-12	10771194	Williams, J.A. and Holder, N.	Cell turnover in neuromasts of zebrafish larvae	Hearing Research	2000	143(1-2)	171-81	
ZDB-PUB-031204-10	14644458	Murakami, S.L., Cunningham, L.L., Werner, L.A., Bauer, E., Pujol, R., Raible, D.W., and Rubel, E.W.	Developmental differences in susceptibility to neomycin-induced hair cell death in the lateral line neuromasts of zebrafish (Danio rerio)	Hearing Research	2003	186(1-2)	47-56	
ZDB-PUB-060105-20	16386394	Hernandez, P.P., Moreno, V., Olivari, F.A., and Allende, M.L.	Sub-lethal concentrations of waterborne copper are toxic to lateral line neuromasts in zebrafish (Danio rerio)	Hearing Research	2006	213(1-2)	1-10	
ZDB-PUB-090406-3	19327392	Schuck, J.B., and Smith, M.E.	Cell proliferation follows acoustically-induced hair cell bundle loss in the zebrafish saccule	Hearing Research	2009	253(1-2)	67-76	
ZDB-PUB-050718-3	16014323	Ton, C., and Parng, C.	The use of zebrafish for assessing ototoxic and otoprotective agents	Hearing Research	2005	208(1-2)	79-88	
ZDB-PUB-060210-13	16459035	Santos, F., Macdonald, G., Rubel, E.W., and Raible, D.W.	Lateral line hair cell maturation is a determinant of aminoglycoside susceptibility in zebrafish (Danio rerio)	Hearing Research	2006	213(1-2)	25-33	
ZDB-PUB-090319-8	19285547	Coffin, A.B., Owens, K.N., Raible, D.W., and Rubel, E.W.	Extracellular divalent cations modulate aminoglycoside-induced hair cell death in the zebrafish lateral line	Hearing Research	2009	253(1-2)	42-51	
ZDB-PUB-961014-885	8458746	Platt, C.	Zebrafish inner ear sensory surfaces are similar to those in goldfish	Hearing Research	1993	65	133-140	
ZDB-PUB-030319-8	12634819	Wallace, B.M. and Wallace, H.	Synaptonemal complex karyotype of zebrafish	Heredity	2003	90(2)	136-140	
ZDB-PUB-080311-5	18322458	Kochakpour, N., and Moens, P.B.	Sex-specific crossover patterns in Zebrafish (Danio rerio)	Heredity	2008	100(5)	489-495	
ZDB-PUB-961014-905		Rahmann, H.	Autoradiographische Untersuchungen zum RNS-Stoffwechselim Tectum Opticum von Brachydanio rerio Ham. Buch	Histochemie	1967	11	205-215	
ZDB-PUB-961014-913		Rahmann, H. and Korfsmeier, K.H.	Einbau von 3-H-Palmitinsaure in das ZNS und die Leber von Brachydanio rerio Ham. Buch. (Autoradiographische Untersuchungen)	Histochemie	1968	16	315-323	
ZDB-PUB-020513-1	11941489	Morgan, D., Goodship, J., Essner, J.J., Vogan, K.J., Turnpenny, L., Yost, J., Tabin, C.J., and Strachan, T.	The left-right determinant inversin has highly conserved ankyrin repeat and IQ domains and interacts with calmodulin	Hum. Genet.	2002	110(4)	377-384	
ZDB-PUB-031028-1	10480362	Smith, M., Herrell, S., Lusher, M., Lako, L., Simpson, C., Wiestner, A., Skoda, R., Ireland, M., and Strachan, T.	Genomic organisation of the human chordin gene and mutation screening of candidate Cornelia de Lange syndrome genes	Hum. Genet.	1999	105(1-2)	104-111	
ZDB-PUB-090819-12	19685247	Gestri, G., Osborne, R.J., Wyatt, A.W., Gerrelli, D., Gribble, S., Stewart, H., Fryer, A., Bunyan, D.J., Prescott, K., Collin, J.R., Fitzgerald, T., Robinson, D., Carter, N.P., Wilson, S.W., and Ragge, N.K.	Reduced TFAP2A function causes variable optic fissure closure and retinal defects and sensitizes eye development to mutations in other morphogenetic regulators	Hum. Genet.	2009	\ 	\ 	
ZDB-PUB-970602-17	9150728	Scott, H.S., Chen, H.M., Rossier, C., Lalioti, M.D., and Antonarakis, S.E.	Isolation of a human gene (HES1) with homology to an Escherichia coli and a zebrafish protein that maps to chromosome 21q122.3	Hum. Genet.	1997	99(5)	616-623	
ZDB-PUB-020701-10	12073012	de la Cruz, J.M., Bamford, R.N., Burdine, R.D., Roessler, E., Barkovich, A.J., Donnai, D., Schier, A.F., and Muenke, M.	A loss-of-function mutation in the CFC domain of TDGF1 is associated with human forebrain defects	Hum. Genet.	2002	110(5)	422-428	
ZDB-PUB-961014-1194		Vinot, H. and Larpent, J.P.	Water pollution by uranium ore treatment works	Hydrobiologia	1984	112	125-129	
ZDB-PUB-980421-4	none	Fang, F.	Danio kyathit, a new species of cyprinid fish from Myitkyina, northern Myanmar	Ichthyol. Explor. Freshwaters	1998	8	273-280	
ZDB-PUB-010829-2	none	Fang, F. and Kottelat, M.	Danio species from northern Laos, with descriptions of three new species (Teleostei: Cyprinidae)	Ichthyol. Explor. Freshwaters	1999	10(3)	281-295	
ZDB-PUB-961014-487	none	Jayaram, K.C.	Systematic status of Danio malabaricus (Pisces: Cyprinidae)	Ichthyol. Explor. Freshwaters	1991	2	109-112	
ZDB-PUB-980421-2	none	Fang, F.	Redescription of Danio kakhienensis, a poorly known cyprinid fish from the Irrawaddy basin	Ichthyol. Explor. Freshwaters	1997	7	289-298	
ZDB-PUB-010829-3	none	Fang, F. and Kottelat, M.	Danio roseus, a new species from the Mekong basin in northeastern Thailand and nothwestern (Teleostei: Cyprinidae)	Ichthyol. Explor. Freshwaters	2000	11(2)	149-154	
ZDB-PUB-980421-3	none	Fang, F.	Danio maetaengensis, a new species of cyprinid fish from northern Thailand	Ichthyol. Explor. Freshwaters	1997	8	41-48	
ZDB-PUB-001030-2	11003389	Vitved, L., Holmskov, U., Koch, C., Teisner, B., Hansen, S., and Skjodt, K.	The homologue of mannose-binding lectin in the carp family Cyprinidae is expressed at high level in spleen, and the deduced primary structure predicts affinity for galactose	Immunogenetics	2000	51(11)	955-964	
ZDB-PUB-021002-5	12242592	Kuroda, N., Figueroa, F., O'hUigin, C., and Klein, J.	Evidence that the separation of Mhc class II from class I loci in the zebrafish, Danio rerio, occurred by translocation	Immunogenetics	2002	54(6)	418-430	
ZDB-PUB-040329-8	15045470	Zhang, Y.B., Li, Q., and Gui, J.F.	Differential expression of two Carassius auratus Mx genes in cultured CAB cells induced by grass carp hemorrhage virus and interferon	Immunogenetics	2004	56(1)	68-75	
ZDB-PUB-050211-5	15702330	Nikolaidis, N., Klein, J., and Nei, M.	Origin and evolution of the Ig-like domains present in mammalian leukocyte receptors: insights from chicken, frog, and fish homologues	Immunogenetics	2005	57(1-2)	151-157	
ZDB-PUB-050714-1	16003467	Huising, M.O., Kruiswijk, C.P., van Schijndel, J.E., Savelkoul, H.F., Flik, G., and Verburg-van Kemenade, B.M.	Multiple and highly divergent IL-11 genes in teleost fish	Immunogenetics	2005	57(6)	432-443	
ZDB-PUB-060213-2	16467986	Milev-Milovanovic, I., Long, S., Wilson, M., Bengten, E., Miller, N.W., and Chinchar, V.G.	Identification and expression analysis of interferon gamma genes in channel catfish	Immunogenetics	2006	58(1)	70-80	
ZDB-PUB-061227-42	17165047	Haynes, M.R., and Wu, G.E.	Gene discovery at the human T-cell receptor alpha/delta locus	Immunogenetics	2007	59(2)	109-121	
ZDB-PUB-071001-7	17891481	Wei, S., Zhou, J.M., Chen, X., Shah, R.N., Liu, J., Orcutt, T.M., Traver, D., Djeu, J.Y., Litman, G.W., and Yoder, J.A.	The zebrafish activating immune receptor Nitr9 signals via Dap12	Immunogenetics	2007	59(10)	813-821	
ZDB-PUB-080218-24	18214467	Saltis, M., Criscitiello, M.F., Ohta, Y., Keefe, M., Trede, N.S., Goitsuka, R., and Flajnik, M.F.	Evolutionarily conserved and divergent regions of the Autoimmune Regulator (Aire) gene: a comparative analysis	Immunogenetics	2008	60(2)	105-114	
ZDB-PUB-090501-1	18560827	Ohtani, M., Hayashi, N., Hashimoto, K., Nakanishi, T., and Dijkstra, J.M.	Comprehensive clarification of two paralogous interleukin 4/13 loci in teleost fish	Immunogenetics	2008	60(7)	383-397	
ZDB-PUB-961014-372	7806278	Greenhalgh, P. and Steiner, L.A.	Recombination activating gene 1 (Rag1) in zebrafish and shark	Immunogenetics	1995	41	54-55	
ZDB-PUB-970722-17	9162099	Bingulac-Popovic, J., Figueroa, F., Sato, A., Talbot, W.S., Johnson, S.L., Gates, M., Postlethwait, J.H., and Klein, J.	Mapping of Mhc class I and class II regions to different linkage groups in the zebrafish, Danio rerio	Immunogenetics	1997	46(2)	129-134	
ZDB-PUB-980401-3	9472068	Graser, R., Vincek, V., Takami, K., and Klein, J.	Analysis of zebrafish Mhc using BAC clones	Immunogenetics	1998	47	318-325	
ZDB-PUB-980810-25	9634478	Gongora, R., Zaleska-Rutczynska, Z., Takami, K., Figueroa, F., and Klein, J.	Linkage of RXRB-like genes to class I and not to class II Mhc genes in the zebrafish	Immunogenetics	1998	48	141-143	
ZDB-PUB-991007-7	10541812	Yoder, J.A., Haire, R.N., and Litman, G.W.	Cloning of two zebrafish cDNAs that share domains with the MHC class II-associated invariant chain	Immunogenetics	1999	50	84-88	
ZDB-PUB-091221-18	20012603	Yoder, J.A., Turner, P.M., Wright, P.D., Wittamer, V., Bertrand, J.Y., Traver, D., and Litman, G.W.	Developmental and tissue-specific expression of NITRs	Immunogenetics	2010	62(2)	117-122	
ZDB-PUB-100112-22	20054533	Meeker, N.D., Smith, A.C., Frazer, J.K., Bradley, D.F., Rudner, L.A., Love, C., and Trede, N.S.	Characterization of the zebrafish T cell receptor beta locus	Immunogenetics	2010	62(1)	23-29	
ZDB-PUB-010102-2	11132160	Danilova, N., Hohman, V.S., Kim, E.H., and Steiner, L.A.	Immunoglobulin variable-region diversity in the zebrafish	Immunogenetics	2000	52(1-2)	81-91	
ZDB-PUB-010308-1	11220619	Clark, M.S., Shaw, L., Kelly, A., Snell, P., and Elgar, G.	Characterization of the MHC class I region of the Japanese pufferfish (Fugu rubripes)	Immunogenetics	2001	52(3-4)	174-185	
ZDB-PUB-010725-2	11398970	Terado, T., Smith, S.L., Nakanishi, T., Nonaka, M.I., Kimura, H., and Nonaka, M.	Occurrence of structural specialization of the serine protease domain of complement factor B at the emergence of jawed vertebrates and adaptive immunity	Immunogenetics	2001	53(3)	250-254	
ZDB-PUB-050318-3	15759114	Savan, R., Kono, T., Igawa, D., and Sakai, M.	A novel tumor necrosis factor (TNF) gene present in tandem with theTNF-alpha gene on the same chromosome in teleosts	Immunogenetics	2005	57(1-2)	140-150	
ZDB-PUB-060213-3	16467987	Panagos, P.G., Dobrinski, K.P., Chen, X., Grant, A.W., Traver, D., Djeu, J.Y., Wei, S., and Yoder, J.A.	Immune-related, lectin-like receptors are differentially expressed in the myeloid and lymphoid lineages of zebrafish	Immunogenetics	2006	58(1)	31-40	
ZDB-PUB-060323-17	16538474	Hikima, J.I., Lennard, M.L., Wilson, M.R., Miller, N.W., Clem, L.W., and Warr, G.W.	Conservation and divergence of the Emu3' enhancer in the IGH locus of teleosts	Immunogenetics	2006	58(2-3)	226-234	
ZDB-PUB-060906-14	16941126	Bengten, E., Quiniou, S., Hikima, J., Waldbieser, G., Warr, G.W., Miller, N.W., and Wilson, M.	Structure of the catfish IGH locus: analysis of the region including the single functional IGHM gene	Immunogenetics	2006	58(10)	831-844	
ZDB-PUB-070303-31	17318646	Dijkstra, J.M., Katagiri, T., Hosomichi, K., Yanagiya, K., Inoko, H., Ototake, M., Aoki, T., Hashimoto, K., and Shiina, T.	A third broad lineage of major histocompatibility complex (MHC) class I in teleost fish; MHC class II linkage and processed genes	Immunogenetics	2007	59(4)	305-321	
ZDB-PUB-070614-26	17541578	Peatman, E., and Liu, Z.	Evolution of CC chemokines in teleost fish: a case study in gene duplication and implications for immune diversity	Immunogenetics	2007	59(8)	613-623	
ZDB-PUB-070820-15	17701034	Beetz, S., Diekhoff, D., and Steiner, L.A.	Characterization of terminal deoxynucleotidyl transferase and polymerase mu in zebrafish	Immunogenetics	2007	59(9)	735-744	
ZDB-PUB-961014-1110	7607709	Take-uchi, H., Figueroa, F., O'hUigin, C., and Klein, J.	Cloning and characterization of class I Mhc genes of the zebrafish, Brachydanio rerio	Immunogenetics	1995	42	77-84	
ZDB-PUB-961104-10	8462988	Ono, H., Figueroa, F., O'hUigin, C., and Klein, J.	Cloning of the beta 2-microglobulin gene in the zebrafish	Immunogenetics	1993	38	1-10	
ZDB-PUB-961104-9	8406613	Sültmann, H., Mayer, W.E., Figueroa, F., O'hUigin, C., and Klein, J.	Zebrafish Mhc class II alpha chain-encoding genes: pholymorphism, expression, and function	Immunogenetics	1993	38	408-420	
ZDB-PUB-980401-4	9472071	Haire, R.N., Strong, S.J., and Litman, G.W.	Tec-family non-receptor tyrosine kinase expressed in zebrafish kidney	Immunogenetics	1998	47	336-337	
ZDB-PUB-990427-12	10079300	Icard-Liepkalns, C., Haire, R.N., Strong, S.J., and Litman, G.W.	Cloning of a cDNA encoding a Pim1 homologue in zebrafish, Danio rerio	Immunogenetics	1999	49(4)	351-353	
ZDB-PUB-001017-4	11003385	Haire, R.N., Rast, J.P., Litman, R.T., and Litman, G.W.	Characterization of three isotypes of immunoglobulin light chains and T-cell antigen receptor a in zebrafish	Immunogenetics	2000	51(11)	915-923	
ZDB-PUB-020318-1	11862394	Matsuo, M.Y., Asakawa, S., Shimizu, N., Kimura, H., and Nonaka, M.	Nucleotide sequence of the MHC class I genomic region of a teleost, the medaka ( Oryzias latipes)	Immunogenetics	2002	53(10)	930-940	
ZDB-PUB-030813-22	12242588	Sambrook, J.G., Russell, R., Umrania, Y., Edwards, Y.J., Campbell, R.D., Elgar, G., and Clark, M.S.	Fugu orthologues of human major histocompatibility complex genes: a genome survey	Immunogenetics	2002	54(6)	367-380	
ZDB-PUB-050318-2	15756545	Ellestad, K.K., and Magor, B.G.	Evolution of transcriptional enhancers in the immunoglobulin heavy-chain gene: functional characteristics of the zebrafish Emu3' enhancer	Immunogenetics	2005	57(1-2)	129-139	
ZDB-PUB-071023-11	17943278	Jackson, A.N., McLure, C.A., Dawkins, R.L., and Keating, P.J.	Mannose binding lectin (MBL) copy number polymorphism in Zebrafish (D. rerio) and identification of haplotypes resistant to L. anguillarum	Immunogenetics	2007	59(11)	861-872	
ZDB-PUB-080324-1	18330557	Yoder, J.A., Cannon, J.P., Litman, R.T., Murphy, C., Freeman, J.L., and Litman, G.W.	Evidence for a transposition event in a second NITR gene cluster in zebrafish	Immunogenetics	2008	60(5)	257-265	
ZDB-PUB-961014-369	8613141	Graser, R., O'hUigin, C., Vincek, V., Meyer, A., and Klein, J.	Trans-species polymorphism of class II mhc loci in danio fishes	Immunogenetics	1996	44	36-48	
ZDB-PUB-961014-847	8482577	Ono, H., O'hUigin, C., Vincek, V., Stet, R.J., Figueroa, F., and Klein, J.	New beta chain-encoding Mhc class II genes in the carp	Immunogenetics	1993	38	146-149	
ZDB-PUB-970602-6	9089097	Willett, C.E., Cherry, J.J., and Steiner, L.A.	Characterization and expression of the recombination activating genes (rag1 and rag2) of zebrafish	Immunogenetics	1997	45(6)	394-404	
ZDB-PUB-961014-721		Maehlen, J., Liestol, K., and Nja, A.	Selectivity of synapse formation during development in vertebrates	In Fundamentals of Memory Formation: Neuronal Plasticity and Brain Function, H. Rahmann, ed., Fortschritte der Zoologie (Progress in Zoology)	1989	37	46-55	
ZDB-PUB-090106-35	19116758	Xing, J.G., El-Sweisi, W., Lee, L.E., Collodi, P., Seymour, C., Mothersill, C., and Bols, N.C.	Development of a zebrafish spleen cell line, ZSSJ, and its growth arrest by gamma irradiation and capacity to act as feeder cells	In Vitro Cell Dev. Biol. Anim.	2009	45(3-4)	163-174	
ZDB-PUB-961014-243	8407719	Driever, W. and Rangini, Z.	Characterization of a cell line derived from zebrafish (Brachydanio rerio) embryos	In Vitro Cell Dev. Biol. Anim.	1993	29A	749-754	
ZDB-PUB-041206-1	15573536	Sawant, M.S., Zhang, S.C., Wang, Q.Y., and Wang, Y.J.	Production of interspecies chimeras by transplanting rosy barb (Puntius conchonius) embryonic cells to zebrafish (Danio rerio) embryos	Indian J. Exp. Biol.	2004	42(8)	830-836	
ZDB-PUB-000309-18	10707902	van der Sar, A.M., de Fockert, J., Betist, M., Zivkovic, D., and den Hertog, J.	Pleiotropic effects of zebrafish protein-tyrosine phosphatase-1B on early embryonic development	International Journal of Developmental Biology	1999	43(8)	785-794	
ZDB-PUB-000505-5	10794076	Semino, C.E. and Allende, M.L.	Chitin oligosaccharides as candidate patterning agents in zebrafish embryogenesis	International Journal of Developmental Biology	2000	44(2)	183-193	
ZDB-PUB-010306-6	11206328	Vaglia, J.L. and Hall, B.K.	Patterns of migration and regulation of trunk neural crest cells in zebrafish (Danio rerio)	International Journal of Developmental Biology	2000	44(8)	867-81	
ZDB-PUB-010410-2	11291860	Solnica-Krezel, L. and Driever, W.	The role of the homeodomain protein Bozozok in zebrafish axis formation	International Journal of Developmental Biology	2001		299-310	
ZDB-PUB-010511-11	11330866	Martorana, M.L., Tawk, M., Lapointe, T., Barre, N., Imboden, M., Joulie, C., Géraudie, J., and Vriz, S.	Zebrafish keratin 8 is expressed at high levels in the epidermis of regenerating caudal fin	International Journal of Developmental Biology	2001	45(2)	449-452	
ZDB-PUB-020807-5	12141423	Coulthard, M.G., Duffy, S., Down, M., Evans, B., Power, M., Smith, F., Stylianou, C., Kleikamp, S., Oates, A., Lackmann, M., Burns, G.F., and Boyd, A.W.	The role of the Eph-ephrin signalling system in the regulation of developmental patterning	International Journal of Developmental Biology	2002	46(4)	375-384	
ZDB-PUB-020807-8	12141447	Hjorth, J.T., Connor, R.M., and Key, B.	Role of hlx1 in zebrafish brain morphogenesis	International Journal of Developmental Biology	2002	46(4)	583-596	
ZDB-PUB-040908-17	15349828	Molyneaux, K., and Wylie, C.	Primordial germ cell migration	International Journal of Developmental Biology	2004	48	537-543	
ZDB-PUB-060315-13	16525935	Zhang, S.H., Yao, J.H., Song, H.D., Wang, L., and Xue, J.L.	Cloning, expression and functional study of translation elongation factor 2 (EF-2) in zebrafish	International Journal of Developmental Biology	2006	50(4)	399-403	
ZDB-PUB-060816-13	16892177	Huysseune, A.	Formation of a successional dental lamina in the zebrafish (Danio rerio): support for a local control of replacement tooth initiation	International Journal of Developmental Biology	2006	50(7)	637-643	
ZDB-PUB-061229-19	17183467	Dee, C.T., Gibson, A., Rengifo, A., Sun, S.K., Patient, R.K., and Scotting, P.J.	A change in response to Bmp signalling precedes ectodermal fate choice	International Journal of Developmental Biology	2007	51(1)	79-84	
ZDB-PUB-070513-20	17486546	Wang, L., Zhang, Y., Shao, M., and Zhang, H.	Spatiotemporal expression of the creatine metabolism related genes agat, gamt and ct1 during zebrafish embryogenesis	International Journal of Developmental Biology	2007	51(3)	247-253	
ZDB-PUB-070625-17	17554685	Lacosta, A.M., Canudas, J., Gonzalez, C., Muniesa, P., Sarasa, M., and Dominguez, L.	Pax7 identifies neural crest, chromatophore lineages and pigment stem cells during zebrafish development	International Journal of Developmental Biology	2007	51(4)	327-331	
ZDB-PUB-071125-31	18033674	Connolly, M.H., and Hall, B.K.	Embryonic heat shock reveals latent hsp90 translation in zebrafish (Danio rerio)	International Journal of Developmental Biology	2008	52(1)	71-79	
ZDB-PUB-080421-10	18415941	Kubota, F., Murakami, T., Tajika, Y., and Yorifuji, H.	Expression of protocadherin 18 in the CNS and pharyngeal arches of zebrafish embryos	International Journal of Developmental Biology	2008	52(4)	397-405	
ZDB-PUB-080421-9	18415940	Davis, J.L., Long, X., Georger, M.A., Scott, I.C., Rich, A., and Miano, J.M.	Expression and comparative genomics of two serum response factor genes in zebrafish	International Journal of Developmental Biology	2008	52(4)	389-396	
ZDB-PUB-080728-12	18649270	Sharma, D., and Kinsey, W.H.	Regionalized calcium signaling in zebrafish fertilization	International Journal of Developmental Biology	2008	52(5-6)	561-570	
ZDB-PUB-090106-43	19123126	Parkin, C.A., Allen, C.E., and Ingham, P.W.	Hedgehog signalling is required for cloacal development in the zebrafish embryo	International Journal of Developmental Biology	2009	53(1)	45-57	
ZDB-PUB-090302-34	19247963	Yuan, Y., Lin, S., Zhu, Z., Zhang, W., and Lai, Z.C.	The mob as tumor suppressor (mats1) gene is required for growth control in developing zebrafish embryos	International Journal of Developmental Biology	2009	53(4)	525-533	
ZDB-PUB-090921-17	19757381	Liu, Q., Chen, Y., Kubota, F., Pan, J.J., and Murakami, T.	Expression of protocadherin-19 in the nervous system of the embryonic zebrafish	International Journal of Developmental Biology	2009	\ 	\ 	
ZDB-PUB-090921-33	19757384	Kobayashi, T.	In vitro germ cell differentiation during sex differentiation in a teleost fish	International Journal of Developmental Biology	2010	54(1)	105-111	
ZDB-PUB-961014-341	7669548	Géraudie, J., Monnot, M.J., Brulfert, A., and Ferretti, P.	Caudal fin regeneration in wild type and long-fin mutant zebrafish is affected by retinoic acid	International Journal of Developmental Biology	1995	39	373-381	
ZDB-PUB-961104-1	8619954	Mercier, P., Simeone, A., Cotelli, F., and Boncinelli, E.	Expression pattern of two otx genes suggests a role in specifying anterior body structures in zebrafish	International Journal of Developmental Biology	1995	39	559-573	
ZDB-PUB-970306-4	8946241	Strähle, U., Blader, P., and Ingham, P.W.	Expression of axial and sonic hedgehog in wildtype and midline defective zebrafish embryos	International Journal of Developmental Biology	1996	40(5)	929-940	
ZDB-PUB-990108-2	9879709	Brulfert, A., Monnot, M.J., and Géraudie, J.	Expression of two even-skipped genes eve1 and evx2 during zebrafish fin morphogenesis and their regulation by retinoic acid	International Journal of Developmental Biology	1998	42	1117-1124	
ZDB-PUB-100309-26	20209431	Csenki, Z., Zaucker, A., Kovacs, B., Hadzhiev, Y., Hegyi, R., Lefler, K.K., Muller, T., Kovacs, R., Urbanyi, B., Varadi, L., and Muller, F.	Intraovarian transplantation of stage I-II follicles results in viable zebrafish embryos	International Journal of Developmental Biology	2010	54(4)	585-589	
ZDB-PUB-100309-27	20209443	Swanhart, L.M., Takahashi, N., Jackson, R.L., Gibson, G.A., Watkins, S.C., Dawid, I.B., and Hukriede, N.A.	Characterization of an lhx1a transgenic reporter in zebrafish	International Journal of Developmental Biology	2010	54(4)	731-736	
ZDB-PUB-000309-19	10707908	Sass, J.B., Martin, C.C., and Krone, P.H.	Restricted expression of the zebrafish hsp90alpha gene in slow and fast muscle fiber lineages	International Journal of Developmental Biology	1999	43(8)	835-838	
ZDB-PUB-010306-7	11206324	Wu, W. and Kinsey, W.H.	Fertilization triggers activation of Fyn kinase in the zebrafish egg	International Journal of Developmental Biology	2000	44(8)	837-841	
ZDB-PUB-010410-3	11291859	Schier, A.F. and Talbot, W.S.	Nodal signaling and the zebrafish organizer	International Journal of Developmental Biology	2001		289-297	
ZDB-PUB-010412-1	11291852	Niehrs, C., Kazanskaya, O., Wu, W., and Glinka, A.	Dickkopf1 and the Spemann-Mangold head organizer.	International Journal of Developmental Biology	2001		237-240	
ZDB-PUB-020417-1	11934151	Del-Pino, E.M., Saenz, F.E., Perez, O.D., Brown, F.D., Avila, M.E., Barragan, V.A., Haddad, N., Paulin-Levasseur, M., and Krohne, G.	Lamina-associated polypeptide 2 (LAP2) expression in fish and amphibians	International Journal of Developmental Biology	2002	46(2)	227-234	
ZDB-PUB-020807-6	12141435	Crowhurst, M.O., Layton, J.E., and Lieschke, G.J.	Developmental biology of zebrafish myeloid cells	International Journal of Developmental Biology	2002	46(4)	483-492	
ZDB-PUB-020807-9	12141449	Hjorth, J. and Key, B.	Development of axon pathways in the zebrafish central nervous system	International Journal of Developmental Biology	2002	46(4)	609-619	
ZDB-PUB-021205-1	12455633	Hoffman, L., Miles, J., Avaron, F., Laforest, L., and Akimenko, M.-A.	Exogenous retinoic acid induces a stage-specific, transient and progressive extension of Sonic hedgehog expression across the pectoral fin bud of zebrafish	International Journal of Developmental Biology	2002	46(7)	949-956	
ZDB-PUB-031031-2	14584779	Lee, K.W., Webb, S.E., and Miller, A.L.	Ca2+ released via IP3 receptors is required for furrow deepening during cytokinesis in zebrafish embryos	International Journal of Developmental Biology	2003	47(6)	411-421	
ZDB-PUB-040726-12	15272388	Le Guellec, D., Morvan-Dubois, G., and Sire, J.Y.	Skin development in bony fish with particular emphasis on collagen deposition in the dermis of the zebrafish (Danio rerio)	International Journal of Developmental Biology	2004	48	217-232	
ZDB-PUB-041130-6	15558483	Tsujikawa, M., and Malicki, J.	Genetics of photoreceptor development and function in zebrafish	International Journal of Developmental Biology	2004	48(8-9)	925-934	
ZDB-PUB-051214-2	16323080	Zhu, H., and Bendall, A.J.	Dlx3 is expressed in the ventral forebrain of chicken embryos: implications for the evolution of the Dlx gene family	International Journal of Developmental Biology	2006	50(1)	71-75	
ZDB-PUB-060227-2	16479485	Cherdantseva, E.M., and Cherdantsev, V.G.	Geometry and mechanics of teleost gastrulation and the formation of primary embryonic axes	International Journal of Developmental Biology	2006	50(2-3)	157-168	
ZDB-PUB-060315-14	16525940	Shah, R., Medina-Martinez, O., Chu, L.F., Samaco, R.C., and Jamrich, M.	Expression of FoxP2 during zebrafish development and in the adult brain	International Journal of Developmental Biology	2006	50(4)	435-438	
ZDB-PUB-060616-21	16741871	Cheung, C.Y., Webb, S.E., Meng, A., and Miller, A.L.	Transient expression of apoaequorin in zebrafish embryos: extending the ability to image calcium transients during later stages of development	International Journal of Developmental Biology	2006	50(6)	561-569	
ZDB-PUB-061020-61	17051479	Saito, T., Fujimoto, T., Maegawa, S., Inoue, K., Tanaka, M., Arai, K., and Yamaha, E.	Visualization of primordial germ cells in vivo using GFP-nos1 3'UTR mRNA	International Journal of Developmental Biology	2006	50(8)	691-699	
ZDB-PUB-071001-8	17891713	Whitfield, T.T., and Hammond, K.L.	Axial patterning in the developing vertebrate inner ear	International Journal of Developmental Biology	2007	51(6-7)	507-520	
ZDB-PUB-081031-4	18956329	Aamar, E., and Dawid, I.B.	Isolation and expression analysis of foxj1 and foxj1.2 in zebrafish embryos	International Journal of Developmental Biology	2008	52(7)	985-991	
ZDB-PUB-090629-32	19557689	Brittijn, S.A., Duivesteijn, S.J., Belmamoune, M., Bertens, L.F., Bitter, W., Debruijn, J.D., Champagne, D.L., Cuppen, E., Flik, G., Vandenbroucke-Grauls, C.M., Janssen, R.A., de Jong, I.M., de Kloet, E.R., Kros, A., Meijer, A.H., Metz, J.R., van der Sar, A.M., Schaaf, M.J., Schulte-Merker, S., Spaink, H.P., Tak, P.P., Verbeek, F.J., Vervoordeldonk, M.J., Vonk, F.J., Witte, F., Yuan, H., and Richardson, M.K.	Zebrafish development and regeneration: new tools for biomedical research	International Journal of Developmental Biology	2009	53(5-6)	835-850	
ZDB-PUB-090921-18	19757382	Janicke, M., Renisch, B., and Hammerschmidt, M.	Zebrafish grainyhead-like1 is a common marker of different non-keratinocyte epidermal cell lineages, which segregate from each other in a Foxi3-dependent manner	International Journal of Developmental Biology	2009	\ 	\ 	
ZDB-PUB-961014-293	8104460	Ericson, J.U., Krauss, S., and Fjose, A.	Genomic sequence and embryonic expression of the zebrafish homeobox gene hox-3.4	International Journal of Developmental Biology	1993	37	263-272	
ZDB-PUB-961014-384	8735932	Haffter, P. and Nüsslein-Volhard, C.	Large scale genetics in a small vertebrate, the zebrafish	International Journal of Developmental Biology	1996	40	221-227	
ZDB-PUB-961104-5	7779683	Barro, O., Joly, C., Condamine, H., and Boulekbache, H.	Widespread expression of the Xenopus homeobox gene Xhox3 in zebrafish eggs causes a disruption of the anterior-posterior axis	International Journal of Developmental Biology	1994	38	613-622	
ZDB-PUB-091101-31	19876844	van den Akker, W.M., Durston, A.J., and Spaink, H.P. 	Identification of hoxb1b downstream genes: hoxb1b as a regulatory factor controlling transcriptional networks and cell movement during zebrafish gastrulation	International Journal of Developmental Biology	2010	54(1)	55-62	
ZDB-PUB-000309-41	10668983	Braat, A.K., Speksnijder, J.E., and Zivkovic, D.	Germ line development in fishes	International Journal of Developmental Biology	1999		745-760	
ZDB-PUB-000505-4	10794084	Andre, M., Ando, S., Ballagny, C., Durliat, M., Poupard, G., Briancon, C., and Babin, P.J.	Intestinal fatty acid binding protein gene expression reveals the cephalocaudal patterning during zebrafish gut morphogenesis	International Journal of Developmental Biology	2000	44(2)	249-252	
ZDB-PUB-020807-7	12141436	Crosier, P.S., Kalev-Zylinska, M.L., Hall, C.J., Flores, M.V.C., Horsfield, J.A., and Crosier, K.E.	Pathways in blood and vessel development revealed through zebrafish genetics	International Journal of Developmental Biology	2002	46(4)	493-502	
ZDB-PUB-040726-13	15272389	Sire, J.Y., and Akimenko, M.A.	Scale development in fish: a review, with description of sonic hedgehog (shh) expression in the zebrafish (Danio rerio)	International Journal of Developmental Biology	2004	48(2-3)	233-246	
ZDB-PUB-041130-7	15558484	Raymond, P.A., and Barthel, L.K.	A moving wave patterns the cone photoreceptor mosaic array in the zebrafish retina	International Journal of Developmental Biology	2004	48(8-9)	935-945	
ZDB-PUB-041228-3	15602699	Eivers, E., McCarthy, K., Glynn, C., Nolan, C.M., and Byrnes, L.	Insulin-like growth factor (IGF) signalling is required for early dorso-anterior development of the zebrafish embryo	International Journal of Developmental Biology	2004	48(10)	1131-1140	
ZDB-PUB-051214-1	16323078	Zhang, L., Zhong, T., Wang, Y., Jiang, Q., Song, H., and Gui, Y.	TBX1, a DiGeorge syndrome candidate gene, is inhibited by retinoic acid	International Journal of Developmental Biology	2006	50(1)	55-61	
ZDB-PUB-060615-4	15744668	Pohl, B.S., Rossner, A., and Knochel, W.	The Fox gene family in Xenopus laevis:FoxI2, FoxM1 and FoxP1 in early development	International Journal of Developmental Biology	2005	49(1)	53-58	
ZDB-PUB-060816-12	16892175	Miyake, A., Saito, T., Kashiwagi, N., Ando, D., Yamamoto, A., Suzuki, T., Nakatsuji, N., and Nakatsuji, T.	Cloning and pattern of expression of the shiro-uo vasa gene during embryogenesis and its roles in PGC development	International Journal of Developmental Biology	2006	50(7)	619-625	
ZDB-PUB-070303-8	17294363	Kubota, F., Murakami, T., Mogi, K., and Yorifuji, H.	Cadherin-6 is required for zebrafish nephrogenesis during early development	International Journal of Developmental Biology	2007	51(2)	123-129	
ZDB-PUB-070513-19	17486545	Moro, E., Maran, C., Slongo, M.L., Argenton, F., Toppo, S., and Onisto, M.	Zebrafish spata2 is expressed at early developmental stages	International Journal of Developmental Biology	2007	51(3)	241-246	
ZDB-PUB-070711-40	17616924	Reijntjes, S., Rodaway, A., and Maden, M.	The retinoic acid metabolising gene, CYP26B1, patterns the cartilaginous cranial neural crest in zebrafish	International Journal of Developmental Biology	2007	51(5)	351-360	
ZDB-PUB-071023-17	17939124	Yin, J., Xia, J.H., Du, X.Z., Liu, J., Zhou, L., Hong, Y.H., and Gui, J.F.	Developmental expression of CagMdkb during gibel carp embryogenesis	International Journal of Developmental Biology	2007	51(8)	761-769	
ZDB-PUB-090424-13	19378255	Vlecken, D.H., Testerink, J., Ott, E.B., Sakalis, P.A., Jaspers, R.T., and Bagowski, C.P.	A critical role for myoglobin in zebrafish development	International Journal of Developmental Biology	2009	53(4)	517-524	
ZDB-PUB-090716-24	19598108	Poulton, L.D., Nolan, K.F., Anastasaki, C., Waldmann, H., and Patton, E.E.	A novel role for Glucocorticoid-Induced TNF Receptor Ligand (Gitrl) in early embryonic zebrafish development	International Journal of Developmental Biology	2009	\ 	\ 	
ZDB-PUB-090921-16	19757379	Hartnett, L., Glynn, C., Nolan, C.M., Grealy, M., and Byrnes, L.	Insulin-like growth factor-2 regulates early neural and cardiovascular system development in zebrafish embryos	International Journal of Developmental Biology	2010	54(4)	573-583	
ZDB-PUB-961014-792	1356006	Molven, A., Hordvik, I., Njolstad, P.R., vanGhelue, M., and Fjose, A.	The zebrafish homeobox gene hox[zf-114]: primary structure, expression pattern and evolutionary aspects	International Journal of Developmental Biology	1992	36	229-237	
ZDB-PUB-970804-1	9184351	Mizell, M. and Romig, E.S.	The aquatic vertebrate embryo as a sentinel for toxins: zebrafish embryo dechorionation and perivitelline space microinjection	International Journal of Developmental Biology	1997	41(2)	411-423	
ZDB-PUB-971204-7	9240571	Géraudie, J. and Ferretti, P.	Correlation between RA-induced apoptosis and patterning defects in regenerating fins and limbs	International Journal of Developmental Biology	1997	41(3)	529-532	
ZDB-PUB-990107-15	9727832	Read, E.M., Rodaway, A.R., Neave, B., Brandon, N., Holder, N., Patient, R.K., and Walmsley, M.E.	Evidence for non-axial A/P patterning in the nonneural ectoderm of Xenopus and zebrafish pregastrula embryos	International Journal of Developmental Biology	1998	42	763-774	
ZDB-PUB-030919-2	12964007	Katoh, M. and Katoh, M.	Identification and characterization of FLJ10737 and CAMTA1 genes on the commonly deleted region of neuroblastoma at human chromosome 1p36.31-p36.23	International Journal of Oncology	2003	23(4)	1219-1224	
ZDB-PUB-050309-5	15754012	Katoh, M.	Molecular evolution of Wnt2b orthologs	International Journal of Oncology	2005	26(4)	1135-1139	
ZDB-PUB-050510-6	15870890	Katoh, M., and Katoh, M.	Comparative genomics on nemo-like kinase gene	International Journal of Oncology	2005	26(6)	1715-1719	
ZDB-PUB-050810-3	16077939	Katoh, Y., and Katoh, M.	Comparative genomics on Sfrp1 orthologs	International Journal of Oncology	2005	27(3)	861-865	
ZDB-PUB-040312-10	15010845	Katoh, M., and Katoh, M.	Identification and characterization of human GUKH2 gene in silico	International Journal of Oncology	2004	24(4)	1033-1038	
ZDB-PUB-050225-2	15138600	Hellborg, F., and Wiman, K.G.	The p53-induced Wig-1 zinc finger protein is highly conserved from fish to man	International Journal of Oncology	2004	24(6)	1559-1564	
ZDB-PUB-050610-11	15942669	Katoh, Y., and Katoh, M.	Comparative genomics on Dkk1 orthologs	International Journal of Oncology	2005	27(1)	275-279	
ZDB-PUB-050718-1	16010442	Katoh, Y, and Katoh, M.	Comparative genomics on BMP4 orthologs	International Journal of Oncology	2005	27(2)	581-585	
ZDB-PUB-961014-872	none	Petrovicky, I.	Hybridization between Brachydanio rerio (Hamilton-Buchanan) and Brachydanio frankei (Meinken)	Ischthyol. Aquar. J.	1966	37	53-67	
ZDB-PUB-030130-1	12597208	Higgs, D.M., Rollo, A.K., Souza, M.J., and Popper, A.N.	Development of form and function in peripheral auditory structures of the zebrafish (Danio rerio)	J. Acoust. Soc. Am.	2003	213	1145-1154	
ZDB-PUB-021112-2	12296721	Moon, H.S., Jacobson, E.M., Khersonsky, S.M., Luzung, M.R., Walsh, D.P., Xiong, W.N., Lee, J.W., Parikh, P.B., Lam, J.C., Kang, T.W., Rosania, G.R., Schier, A.F., and Chang, Y.T.	A novel microtubule destabilizing entity from orthogonal synthesis of triazine library and zebrafish embryo screening	J. Am. Chem. Soc.	2002	124(39)	11608-11609	
ZDB-PUB-070806-20	17658803	Gagey, N., Neveu, P., Benbrahim, C., Goetz, B., Aujard, I., Baudin, J.B., and Jullien, L.	Two-Photon Uncaging with Fluorescence Reporting: Evaluation of the o-Hydroxycinnamic Platform	J. Am. Chem. Soc.	2007	129(32)	9986-9998	
ZDB-PUB-090828-28	19708646	Ouyang, X., Shestopalov, I.A., Sinha, S., Zheng, G., Pitt, C.L., Li, W.H., Olson, A.J., and Chen, J.K.	Versatile Synthesis and Rational Design of Caged Morpholinos	J. Am. Chem. Soc.	2009	131(37)	13255-13269	
ZDB-PUB-091221-1	20000765	Xu, Z., Baek, K.H., Kim, H.N., Cui, J., Qian, X., Spring, D.R., Shin, I., and Yoon, J.	Zn(2+)-Triggered Amide Tautomerization Produces a Highly Zn(2+)-Selective, Cell-Permeable, and Ratiometric Fluorescent Sensor	J. Am. Chem. Soc.	2010	132(2)	601-610	
ZDB-PUB-070827-18	17711280	Tang, X., Maegawa, S., Weinberg, E.S., and Dmochowski, I.J.	Regulating Gene Expression in Zebrafish Embryos Using Light-Activated, Negatively Charged Peptide Nucleic Acids	J. Am. Chem. Soc.	2007	129(36)	11000-11001	
ZDB-PUB-080124-14	18179220	Moise, A.R., Domínguez, M., Alvarez, S., Alvarez, R., Schupp, M., Cristancho, A.G., Kiser, P.D., Lera, A.R., Lazar, M.A., and Palczewski, K.	Stereospecificity of Retinol Saturase: Absolute Configuration, Synthesis, and Biological Evaluation of Dihydroretinoids	J. Am. Chem. Soc.	2008	130(4)	1154-1155	
ZDB-PUB-031001-10	14505387	Khersonsky, S.M., Jung, D.W., Kang, T.W., Walsh, D.P., Moon, H.S., Jo, H., Jacobson, E.M., Shetty, V., Neubert, T.A., and Chang, Y.T.	Facilitated forward chemical genetics using a tagged triazine library and zebrafish embryo screening	J. Am. Chem. Soc.	2003	125(39)	11804-11805	
ZDB-PUB-061031-9	17061899	Ko, S.K., Yang, Y.K., Tae, J., and Shin, I.	In vivo monitoring of mercury ions using a rhodamine-based molecular probe	J. Am. Chem. Soc.	2006	128(43)	14150-14155	
ZDB-PUB-090116-19	19138071	Qian, F., Zhang, C., Zhang, Y., He, W., Gao, X., Hu, P., and Guo, Z.	Visible Light Excitable Zn(2+) Fluorescent Sensor Derived from an Intramolecular Charge Transfer Fluorophore and Its in Vitro and in Vivo Application	J. Am. Chem. Soc.	2009	131(4)	1460-1468	
ZDB-PUB-090309-13	19254023	Teo, Y.N., Wilson, J.N., and Kool, E.T.	Polyfluorophores on a DNA Backbone: A Multicolor Set of Labels Excited at One Wavelength	J. Am. Chem. Soc.	2009	131(11)	3923-3933	
ZDB-PUB-010912-14	11523830	Concha, M.L. and Wilson, S.W.	Asymmetry in the epithalamus of vertebrates	J. Anat.	2001	199(1-2)	63-84	
ZDB-PUB-080124-7	18173770	Levanti, M.B., Montalbano, G., Laurà, R., Ciriaco, E., Cobo, T., García-Suarez, O., Germanà, A., and Vega, J.A.	Calretinin in the peripheral nervous system of the adult zebrafish	J. Anat.	2008	212(1)	67-71	
ZDB-PUB-010912-15	11523824	Haines, L. and Currie, P.D.	Morphogenesis and evolution of vertebrate appendicular muscle	J. Anat.	2001	199(1-2)	205-209	
ZDB-PUB-071211-2	11523820	Fleming, A., Keynes, R.J., and Tannahill, D.	The role of the notochord in vertebral column formation	J. Anat.	2001	199(1-2)	177-180	
ZDB-PUB-010912-16	11523812	Kimmel, C.B., Miller, C.T., and Keynes, R.J.	Neural crest patterning and the evolution of the jaw	J. Anat.	2001	199(1-2)	105-120	
ZDB-PUB-970812-18	9183678	Sire, J.Y., Allizard, F., Babiar, O., Bourguignon, J., and Quilhac, A.	Scale development in zebrafish (Danio rerio)	J. Anat.	1997	190(4)	545-561	
ZDB-PUB-961014-113	none	Blyth, E.	Reports on some fishes received chiefly from the Sitang River and its tributary streams, Tenasserim Provinces	J. Asia. Soc. Beng.	1860	29	138-174	
ZDB-PUB-030602-8	12724823	Harris, J.A., Cheng, A.G., Cunningham, L.L., MacDonald, G., Raible, D.W., and Rubel, E.W.	Neomycin-induced hair cell death and rapid regeneration in the lateral line of zebrafish (Danio rerio)	J. Assoc. Res. Otolaryngol.	2003	4(2)	219-234	
ZDB-PUB-090310-4	19255807	Wang, Q., and Steyger, P.S.	Trafficking of Systemic Fluorescent Gentamicin into the Cochlea and Hair Cells	J. Assoc. Res. Otolaryngol.	2009	10(2)	205-219	
ZDB-PUB-070625-1	17541769	Gabashvili, I.S., Sokolowski, B.H., Morton, C.C., and Giersch, A.B.	Ion Channel Gene Expression in the Inner Ear	J. Assoc. Res. Otolaryngol.	2007	8(3)	305-328	
ZDB-PUB-080415-20	18408970	Chiu, L.L., Cunningham, L.L., Raible, D.W., Rubel, E.W., and Ou, H.C.	Using the Zebrafish Lateral Line to Screen for Ototoxicity	J. Assoc. Res. Otolaryngol.	2008	9(2)	178-190	
ZDB-PUB-090302-24	19241104	Ou, H.C., Cunningham, L.L., Francis, S.P., Brandon, C.S., Simon, J.A., Raible, D.W., and Rubel, E.W.	Identification of FDA-Approved Drugs and Bioactives that Protect Hair Cells in the Zebrafish (Danio rerio) Lateral Line and Mouse (Mus musculus) Utricle	J. Assoc. Res. Otolaryngol.	2009	10(2)	191-203	
ZDB-PUB-020807-18	12162367	Higgs, D.M., Souza, M.J., Wilkins, H.R., Presson, J.C., and Popper, A.N.	Age- and size-related changes in the inner ear and hearing ability of the adult zebrafish (Danio rerio)	J. Assoc. Res. Otolaryngol.	2002	3(2)	174-184	
ZDB-PUB-080915-19	18784957	Kang, Y.J., Stevenson, A.K., Yau, P.M., and Kollmar, R.	Sparc Protein Is Required for Normal Growth of Zebrafish Otoliths	J. Assoc. Res. Otolaryngol.	2008	9(4)	436-451	
ZDB-PUB-000406-1	10497209	Almenar-Queralt, A., Lee, A., Conley, C.A., Ribas-Pouplana, L., and Fowler, V.M.	Identification of a novel tropomodulin isoform, skeletal tropomodulin, that caps actin filament pointed ends in skeletal muscle	J. Biol. Chem.	1999	274(40)	28466-28475	
ZDB-PUB-000505-25	10747875	Liu, D., Chandy, M., Lee, S.K., Le Drean, Y., Ando, H., Xiong, F., Lee, J.W., and Hew, C.L.	A zebrafish ftz-f1 (Fushi tarazu factor 1) homologue requires multiple subdomains in the d and e regions for its transcriptional activity	J. Biol. Chem.	2000	275(22)	16758-16766	
ZDB-PUB-000508-2	10753927	Urano, J., Tabancay, A.P., Yang, W., and Tamanoi, F.	The saccharomyces cerevisiae rheb G-protein is involved in regulating canavanine resistance and arginine uptake	J. Biol. Chem.	2000	275(15)	11198-11206	
ZDB-PUB-010404-2	11278688	Kennedy, B.N., Vihtelic, T.S., Checkley, L., Vaughan, K.T., and Hyde, D.R.	Isolation of a zebrafish rod opsin promoter to generate a transgenic zebrafish line expressing EGFP in rod photoreceptors	J. Biol. Chem.	2001	276(17)	14037-14043	
ZDB-PUB-020110-1	11742002	Karchner, S.I., Franks, D.G., Powell, W.H., and Hahn, M.E.	Regulatory interactions among three members of the vertebrate aryl hydrocarbon receptor family: AHR repressor, AHR1, and AHR2	J. Biol. Chem.	2001	277(9)	6949-6959	
ZDB-PUB-021119-3	12237316	Lerch-Gaggl, A., Haque, J., Li, J., Ning, G., Traktman, P., and Duncan, S.A.	Pescadillo is essential for nucleolar assembly, ribosome biogenesis, and Mammalian cell proliferation.	J. Biol. Chem.	2002	277(47)	45347-45355	
ZDB-PUB-030826-14	12925535	Ghosh, S., Moore, S., Bell, R.M., and Dush, M.	Functional analysis of a phosphatidic acid binding domain in human Raf-1 kinase : Mutations in the phosphatidate binding domain lead to tail and trunk abnormalities in developing zebrafish embryos	J. Biol. Chem.	2003	278(46)	45690-45696	
ZDB-PUB-031003-1	12514187	Fargeas, C.A., Florek, M., Huttner, W.B., and Corbeil, D.	Characterization of prominin-2, a new member of the prominin family of pentaspan membrane glycoproteins	J. Biol. Chem.	2003	278(10)	8586-8596	
ZDB-PUB-040225-4	14970195	Paukert, M., Sidi, S., Russell, C., Siba, M., Wilson, S.W., Nicolson, T., and Grunder, S.	A family of acid-sensing ion channels (ASICs) from the zebrafish: Widespread expression in the central nervous system suggests a conserved role in neuronal communication	J. Biol. Chem.	2004	279(18)	18783-18791	
ZDB-PUB-040514-1	15140880	Fuchs, C., Heib, V., Kiger, L., Haberkamp, M., Roesner, A., Schmidt, M., Hamdane, D., Marden, M.C., Hankeln, T., and Burmester, T.	Zebrafish reveals different and conserved features of vertebrate neuroglobin gene structure, expression pattern and ligand binding	J. Biol. Chem.	2004	279(23)	24116-24122	
ZDB-PUB-040726-11	15271994	Yoshimura, Y., Tani, M., Okino, N., Iida, H., and Ito, M.	Molecular cloning and functional analysis of zebrafish neutral ceramidase	J. Biol. Chem.	2004	279(42)	44012-44022	
ZDB-PUB-040803-5	15277532	Yang, X., Kovalenko, D., Nadeau, R.J., Harkins, L.K., Mitchell. J., Zubanova, O., Chen, P.Y., and Friesel, R.	Sef interacts with TAK1 and mediates JNK activation and apoptosis	J. Biol. Chem.	2004	279(37)	38099-38102	
ZDB-PUB-040813-5	12835326	Schulz, A. and Schöneberg, T. 	The Structural Evolution of a P2Y-like G-protein-coupled Receptor	J. Biol. Chem.	2003	278(37)	35531-35541	
ZDB-PUB-040914-6	15358764	Nadauld, L.D., Sandoval, I.T., Chidester, S., Yost, H.J., and Jones, D.A.	Adenomatous polyposis coli control of retinoic acid biosynthesis is critical for zebrafish intestinal development and differentiation	J. Biol. Chem.	2004	279(49)	51581-51589	
ZDB-PUB-060227-4	16481322	Kaur, S., Castellone, M.D., Bedell, V.M., Konar, M., Gutkind, J.S., and Ramchandran, R.	Robo4 signaling in endothelial cells imply attraction guidance mechanisms	J. Biol. Chem.	2006	281(16)	11347-11356	
ZDB-PUB-060403-3	16565091	Laize, V., Viegas, C.S., Price, P.A., and Cancela, M.L.	Identification of an osteocalcin isoform in fish with a large acidic prodomain	J. Biol. Chem.	2006	281(22)	15037-15043	
ZDB-PUB-060526-2	16699180	Eisinger, A.L., Nadauld, L.D., Shelton, D.N., Peterson, P.W., Phelps, R.A., Chidester, S., Stafforini, D.M., Prescott, S.M., and Jones, D.A.	The adenomatous polyposis coli tumor suppressor gene regulates expression of cyclooxygenase-2 by a mechanism that involves retinoic Acid	J. Biol. Chem.	2006	281(29)	20474-20482	
ZDB-PUB-060731-9	16861230	Pizzo, E., Buonanno, P., Di Maro, A., Ponticelli, S., De Falco, S., Quarto, N., Cubellis, M.V., and D'Alessio, G.	Ribonucleases and angiogenins from fish	J. Biol. Chem.	2006	281(37)	27454-27460	
ZDB-PUB-060816-10	16891308	Stanton, S.E., McReynolds, L.J., Evans, T., and Schreiber-Agus, N.	YAF2 inhibits caspase 8-mediated apoptosis and regulates cell survival during zebrafish embryogenesis	J. Biol. Chem.	2006	281(39)	28782-28793	
ZDB-PUB-061116-13	17098734	Isken, A., Holzschuh, J., Lampert, J.M., Fischer, L., Oberhauser, V., Palczewski, K., and von Lintig, J.	Sequestration of retinyl esters is essential for retinoid signaling in the zebrafish embryo	J. Biol. Chem.	2007	282(2)	1144-1151	
ZDB-PUB-070806-26	17670743	Capaldi, S., Guariento, M., Saccomani, G., Fessas, D., Perduca, M., and Monaco, H.L.	A single amino acid mutation in zebrafish (Danio rerio) liver bile acid-binding protein can change the stoichiometry of ligand binding	J. Biol. Chem.	2007	282(42)	31008-31018	
ZDB-PUB-070806-31	17673467	Eisinger, A.L., Nadauld, L.D., Shelton, D.N., Prescott, S.M., Stafforini, D.M.,  and Jones, D.A.	Retinoic acid inhibits beta -catenin through suppression of cox-2: A role for truncated adenomatous polyposis coli	J. Biol. Chem.	2007	282(40)	29394-29400	
ZDB-PUB-070912-9	17827149	Goehring, A.S., Pedroja, B.S., Hinke, S.A., Langeberg, L.K., and Scott, J.D.	MyRIP anchors protein kinase A to the exocyst complex	J. Biol. Chem.	2007	282(45)	33155-33167	
ZDB-PUB-071016-5	17932042	Wang, Y., Fu, X., Gaiser, S., Köttgen, M., Kramer-Zucker, A., Walz, G., and Wegierski, T.	OS-9 regulates the transit and polyubiquitination of TRPV4 in the endoplasmic reticulum	J. Biol. Chem.	2007	282(50)	36561-36570	
ZDB-PUB-071108-7	17965408	Yeh, L.K., Liu, C.Y., Chien, C.L., Converse, R.L., Kao, W.W., Chen, M.S., Hsieh, F.J., and Wang, I.J.	Molecular analysis and characterization of zebrafish keratocan (zKera) gene	J. Biol. Chem.	2008	283(1)	506-517	
ZDB-PUB-071210-28	18056260	Ochi, H., Hans, S., and Westerfield, M.	Smarcd3 regulates the timing of zebrafish myogenesis onset	J. Biol. Chem.	2008	283(6)	3529-3536	
ZDB-PUB-080311-1	18316368	Lu, Z., Liu, W., Huang, H., He, Y., Han, Y., Wang, Y., Li, Q., Ruan, K., Ye, Z., Low, B.C., Meng, A., and Lin, S.C.	Protein encoded by the AxinFu allele effectively downregulates Wnt signaling but exerts a dominant negative effect on c-Jun N-terminal kinase signaling	J. Biol. Chem.	2008	283(19)	13132-13139	
ZDB-PUB-080408-1	18039659	Xie, M., Mosig, A., Qi, X., Li, Y., Stadler, P.F., and Chen, J.J.	Structure and function of the smallest vertebrate telomerase RNA from teleost fish	J. Biol. Chem.	2008	283(4)	2049-2059	
ZDB-PUB-080421-6	18413315	Le, H.Y., Zhang, Y., Liu, H., Ma, L.H., Jin, Y., Huang, Q.H., Chen, Y., Deng, M., Chen, Z., Chen, S.J., and Liu, T.	EENA promotes myeloid proliferation through stimulating ERK1/2 phosphorylation in zebrafish	J. Biol. Chem.	2008	283(25)	17652-17661	
ZDB-PUB-080422-17	18424781	Granero-Moltó, F., Sarmah, S., O'Rear, L., Spagnoli, A., Abrahamson, D., Saus, J., Hudson, B.G., and Knapik, E.W.	Goodpasture antigen-binding protein and its spliced variant, ceramide transfer protein, have different functions in the modulation of apoptosis during zebrafish development	J. Biol. Chem.	2008	283(29)	20495-20504	
ZDB-PUB-081121-6	19008220	Schredelseker, J., Dayal, A., Schwerte, T., Franzini-Armstrong, C., and Grabner, M.	Proper restoration of excitation-contraction coupling in the dihydropyridine receptor beta 1-null zebrafish relaxed is an exclusive function of the beta 1a subunit	J. Biol. Chem.	2009	284(2)	1242-1251	
ZDB-PUB-081203-24	19036723	Picozzi, P., Wang, F., Cronk, K., and Ryan, K.	Eomesodermin requires TGF-beta /activin signaling and binds Smad2 to activate mesodermal genes	J. Biol. Chem.	2009	284(4)	2397-2408	
ZDB-PUB-090424-17	19380582	Liu, J.X., Hu, B., Wang, Y., Gui, J.F., and Xiao, W.	Zebrafish eaf1 and eaf2/u19 mediate effective convergence and extension movements through the maintenance of wnt11 and wnt5 expression	J. Biol. Chem.	2009	284(24)	16679-16692	
ZDB-PUB-090518-5	19429680	Yabu, T., Shimizu, A., and Yamashita, M.	A novel mitochondrial sphingomyelinase in zebrafish cells	J. Biol. Chem.	2009	284(30)	20349-20363	
ZDB-PUB-090526-6	19447890	Zhou, J., Feng, X., Ban, B., Liu, J., Wang, Z., and Xiao, W.	The elongation factor ELL (Eleven-Nineteen Lysine-Rich Leukemia) acts as a transcription factor for direct thrombospondin-1 regulation	J. Biol. Chem.	2009	284(28)	19142-19152	
ZDB-PUB-961101-17	8626800	Wang, Y., Macke, J.P., Abella, B.S., Andreasson, K., Worley, P., Gilbert, D.J., Copeland, N.G., Jenkins, N.A., and Nathans, J.	A large family of putative transmembrane receptors homologous to the product of the Drosophila tissue polarity gene frizzled	J. Biol. Chem.	1996	271(8)	4468-4476	
ZDB-PUB-970326-3	8939936	White, J.A., Guo, Y.D., Baetz, K., Beckett-Jones, B., Bonasoro, J., Hsu, K.E., Dilworth, F.J., Jones, G., and Petkovich, M.	Identification of the retinoic acid-inducible all-trans- retinoic acid 4-hydroxylase	J. Biol. Chem.	1996	271(47)	29922-29927	
ZDB-PUB-971204-3	9228041	Ray, W.J., Bain, G., Yao, M., and Gottlieb, D.I.	CYP26, a novel mammalian cytochrome P450, is induced by retinoic acid and defines a new family	J. Biol. Chem.	1997	272(30)	18702-18708	
ZDB-PUB-990628-30	10329718	Mikkola, I., Bruun, J.A., Bjorkoy, G., Holm, T., and Johansen, T.	Phosphorylation of the transactivation domain of pax6 by extracellular signal-regulated kinase and p38 mitogen-activated protein kinase	J. Biol. Chem.	1999	274(21)	15115-15126	
ZDB-PUB-991026-2	10497171	Rubin, D.A. and Jüppner, H.	Zebrafish express the common parathyroid hormone/parathyroid hormone-related peptide receptor (PTH1R) and a novel receptor (PTH3R) that is preferentially activated by mammalian and fugufish parathyroid hormone-related peptide	J. Biol. Chem.	1999	274(40)	28185-28190	
ZDB-PUB-091023-20	19801676	Mathew, L.K., Sengupta, S., Franzosa, J., Perry, J., La Du, J., Andreasen, E.A., and Tanguay, R.L.	Comparative expression profiling reveals an essential role for Raldh2 in epimorphic regeneration	J. Biol. Chem.	2009	284(48)	33642-33653	
ZDB-PUB-100119-2	20064927	Jiang, X., Yu, Y., Yang, H.W., Agar, N., Frado, L., and Johnson, M.D.	The Imprinted Gene PEG3 Inhibits Wnt Signaling and Regulates Glioma Growth	J. Biol. Chem.	2010	285(11)	8472-8480	
ZDB-PUB-100302-2	20177065	Verbruggen, V., Ek, O., Georlette, D., Delporte, F., Von Berg, V., Detry, N., Biemar, F., Coutinho, P., Martial, J.A., Voz, M.L., Manfroid, I., and Peers, B.	The Pax6b homeodomain is dispensable for pancreatic endocrine cell differentiation in zebrafish	J. Biol. Chem.	2010	\ 	\ 	
ZDB-PUB-001019-13	11016933	Bertrand, C., Chatonnet, A., Takke, C., Yan, Y.-L., Postlethwait, J., Toutant, J.P., and Cousin, X.	Zebrafish acetylcholinesterase is encoded by a single gene localised on linkage group 7 - Gene structure and polymorphism; molecular forms and expression pattern during development	J. Biol. Chem.	2001	276(1)	464-474	
ZDB-PUB-010417-11	11278918	Kiefer, C., Hessel, S., Lampert, J.M., Vogt, K., Lederer, M.O., Breithaupt, D.E., and von Lintig, J.	Identification and characterization of a mammalian enzyme catalyzing the asymmetric oxidative cleavage of provitamin A	J. Biol. Chem.	2001	276(17)	14110-14116	
ZDB-PUB-020701-1	10559277	Karchner, S.I., Powell, W.H., and Hahn, M.E.	Identification and functional characterization of two highly divergent aryl hydrocarbon receptors (AHR1 and AHR2) in the teleost Fundulus heteroclitus. Evidence for a novel subfamily of ligand-binding basic helix loop helix-Per-ARNT-Sim (bHLH-P	J. Biol. Chem.	2000	274(47)	33814-33824	
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ZDB-PUB-030902-2	9575181	Inohara, N., del Peso, L., Koseki, T., Chen, S., and Nunez, G.	RICK, a novel protein kinase containing a caspase recruitment domain, interacts with CLARP and regulates CD95-mediated apoptosis	J. Biol. Chem.	1998	273(20)(erratum: J. Biol. Chem. 273(29):18675)	12296-12300	
ZDB-PUB-040109-18	14701818	Robalino, J., Joshi, B., Fahrenkrug, S.C., and Jagus, R.	Two zebrafish eIF4E family members are differentially expressed and functionally divergent	J. Biol. Chem.	2004	279(11)	10532-10541	
ZDB-PUB-040109-9	14709556	Runko, A.P. and Sagerström, C.G.	Isolation of nlz2 and characterization of essential domains in Nlz-family proteins	J. Biol. Chem.	2004	279(12)	11917-11925	
ZDB-PUB-040706-8	15231826	Reimers, M.J., Hahn, M.E., and Tanguay, R.L.	Two zebrafish alcohol dehydrogenases share common ancestry with mammalian class I, II, IV, and V ADH genes but have distinct functional characteristics	J. Biol. Chem.	2004	279(37)	38303-38312	
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ZDB-PUB-050104-5	15623516	Chinen, A., Matsumoto, Y., and Kawamura, S.	Spectral differentiation of blue opsins between phylogenetically close but ecologically distant goldfish and zebrafish	J. Biol. Chem.	2005	280(10)	9460-9466	
ZDB-PUB-050413-16	15824097	Koo, B.K., Yoon, K.J., Yoo, K.W., Lim, H.S., Song, R., So, J.H., Kim, C.H., and Kong, Y.Y.	Mind bomb-2 is an E3 ligase for notch ligand	J. Biol. Chem.	2005	280(23)	22335-22342	
ZDB-PUB-050623-9	15967793	Nadauld, L.D., Shelton, D.N., Chidester, S., Yost, H.J., and Jones, D.A.	The zebrafish retinol dehydrogenase, rdh1l, is essential for intestinal development and is regulated by the tumor suppressor adenomatous polyposis coli	J. Biol. Chem.	2005	280(34)	30490-30495	
ZDB-PUB-050711-6	15998642	Krawitz, P., Haffner, C., Fluhrer, R., Steiner, H., Schmid, B., and Haass, C.	Differential localization and identification of a critical aspartate suggest non-redundant proteolytic functions of the presenlin in homologues SPPL2b and SPPL3	J. Biol. Chem.	2005	280(47)	39515-39523	
ZDB-PUB-051012-14	16210319	Juarez, M.A., Su, F., Chun, S., Kiel, M.J., and Lyons, S.E.	Distinct roles for Scl in erythroid specification and maturation in zebrafish	J. Biol. Chem.	2005	280(50)	41636-41644	
ZDB-PUB-051221-2	16361705	Tang, H., Veldman, M.B., and Goldman, D.	Characterization of a muscle-specific enhancer in human MuSK promoter reveals the essential role of myogenin in controlling activity-dependent gene regulation	J. Biol. Chem.	2006	281(7)	3943-3953	
ZDB-PUB-060323-9	16531401	Azuma, M., Toyama, R., Laver, E., and Dawid, I.B.	Perturbation of rRNA synthesis in the bap28 mutation leads to apoptosis mediated by p53 in the zebrafish central nervous system	J. Biol. Chem.	2006	281(19)	13309-13316	
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ZDB-PUB-060906-8	16936286	Whiteford, J.R., and Couchman, J.R.	A conserved NXIP motif is required for cell adhesion properties of the syndecan-4 ectodomain	J. Biol. Chem.	2006	281(43)	32156-32163	
ZDB-PUB-060914-1	11964399	McCarthy, R.A., Barth, J.L., Chintalapudi, M.R., Knaak, C., and Argraves, W.S.	Megalin functions as an endocytic sonic hedgehog receptor	J. Biol. Chem.	2002	277(28)	25660-25667	
ZDB-PUB-061020-25	17023431	Young, S.R., Mumaw, C., Marrs, J.A., and Skalnik, D.G.	Antisense targeting of CXXC finger protein 1 inhibits genomic cytosine methylation and primitive hematopoiesis in zebrafish	J. Biol. Chem.	2006	281(48)	37034-37044	
ZDB-PUB-061020-30	17028196	Nadauld, L.D., Phelps, R., Moore, B.C., Eisinger, A., Sandoval, I.T., Chidester, S., Peterson, P.W., Manos, E.J., Sklow, B., Burt, R.W., and Jones, D.A.	Adenomatous polyposis coli control of C-terminal binding protein-1 stability regulates expression of intestinal retinol dehydrogenases	J. Biol. Chem.	2006	281(49)	37828-37835	
ZDB-PUB-070210-36	17255103	Plata, C., Sussman, C.R., Sindic, A., Liang, J.O., Mount, D.B., Josephs, Z.M., Chang, M.H., and Romero, M.F.	Zebrafish Slc5a12 encodes an electroneutral sodium monocarboxylate transporter (SMCTn): A comparison to the electrogenic SMCT (SMCTe/Slc5a8)	J. Biol. Chem.	2007	282(16)	11996-12009	
ZDB-PUB-070303-42	17331947	Ashworth, R., Devogelaere, B., Fabes, J., Tunwell, R.E., Koh, K.R., De Smedt, H., and Patel, S.	Molecular and functional characterization of IP33 receptors during early zebrafish development	J. Biol. Chem.	2007	282(19)	13984-13993	
ZDB-PUB-070330-47	12586822	Kitano, J., Yamazaki, Y., Kimura, K., Masukado, T., Nakajima, Y., and Nakanishi, S.	Tamalin is a scaffold protein that interacts with multiple neuronal proteins in distinct modes of protein-protein association	J. Biol. Chem.	2003	278(17)	14762-14768	
ZDB-PUB-070711-2	17255107	Jasuja, R., Ge, G., Voss, N.G., Lyman-Gingerich, J., Branam, A.M., Pelegri, F.J., and Greenspan, D.S.	Bone morphogenetic protein 1 prodomain specifically binds and regulates signaling by bone morphogenetic proteins 2 and 4	J. Biol. Chem.	2007	282(12)	9053-9062	
ZDB-PUB-070711-7	17595169	Hayashi, Y., Okino, N., Kakuta, Y., Shiknai, T., Tani, M., Narimatsu, H., and Ito, M.	Klotho-related protein is a novel cytosolic neutral beta -glycosylceramidase	J. Biol. Chem.	2007	282(42)	30889-30900	
ZDB-PUB-070920-1	17848559	Mathew, L.K., Sengupta, S., Kawakami, A., Andreasen, E.A., Löhr, C.V., Loynes, C.A., Renshaw, S.A., Peterson, R.T., and Tanguay, R.L.	Unraveling tissue regeneration pathways using chemical genetics	J. Biol. Chem.	2007	282(48)	35202-35210	
ZDB-PUB-071219-10	18073205	Bessiere, D., Lacroix, C., Campagne, S., Ecochard, V., Guillet, V., Mourey, L., Lopez, F., Czaplicki, J., Demange, P., Milon, A., Girard, J.P., and Gervais, V.	Structure-function analysis of the THAP zinc finger of THAP1, a large C2CH DNA-binding module linked to RB/E2F pathways	J. Biol. Chem.	2008	283(7)	4352-4363	
ZDB-PUB-071227-17	18156182	Surmann-Schmitt, C., Dietz, U., Kireva, T., Adam, N., Park, J., Tagariello, A., Onnerfjord, P., Heinegård, D., Schlötzer-Schrehardt, U., Deutzmann, R., von der Mark, K., and Stock, M.	UCMA, a novel secreted cartilage-specific protein with implications in osteogenesis	J. Biol. Chem.	2008	283(11)	7082-7093	
ZDB-PUB-080228-8	18272521	Smyth, V.A., Di Lorenzo, D., and Kennedy, B.N.	A novel, evolutionary conserved enhancer of cone photoreceptor-specific expression	J. Biol. Chem.	2008	283(16)	10881-10891	
ZDB-PUB-080825-32	18687681	Li, P., Chaurasia, S.S., Gao, Y., Carr, A.L., Iuvone, P.M., and Li, L.	CLOCK is required for maintaining the circadian rhythms of opsin mRNA expression in photoreceptor cells	J. Biol. Chem.	2008	283(46)	31673-31678	
ZDB-PUB-080902-19	18753130	Whiteford, J.R., Ko, S., Lee, W., and Couchman, J.R.	Structural and cell adhesion properties of zebrafish syndecan-4 are shared with higher vertebrates	J. Biol. Chem.	2008	283(43)	29322-29330	
ZDB-PUB-090217-33	19211552	Zoeller, J.J., Pimtong, W., Corby, H., Goldoni, S., Iozzo, A.E., Owens, R.T., Ho, S.Y., and Iozzo, R.V.	A central role for decorin during vertebrate convergent extension	J. Biol. Chem.	2009	284(17)	11728-11737	
ZDB-PUB-090318-10	19278998	Kleinschmidt, M.A., Wagner, T.U., Liedtke, D., Spahr, S., Samans, B., and Gaubatz, S.	Lin9 is required for mitosis and cell survival during early zebrafish development	J. Biol. Chem.	2009	284(19)	13119-13127	
ZDB-PUB-090629-16	19542236	Chisada, S.I., Yoshimura, Y., Sakaguchi, K., Uemura, S., Go, S., Ikeda, K., Uchima, H., Matsunaga, N., Ogura, K., Tai, T., Okino, N., Taguchi, R., Inokuchi, J., and Ito, M.	Zebrafish and mouse alpha2,3-sialyltranserases responsible for synthesizing GM4 ganglioside	J. Biol. Chem.	2009	284(44)	30534-30546	
ZDB-PUB-090921-20	19759004	Anderson, K.R., Torres, C.A., Solomon, K., Becker, T.C., Newgard, C.B., Wright, C.V., Hagman, J., and Sussel, L.	Cooperative transcriptional regulation of the essential pancreatic islet gene NeuroD1 (beta2) BY NkX2.2 and neurogenin 3	J. Biol. Chem.	2009	284(45)	31236-31248	
ZDB-PUB-961014-359	7852419	Gong, Z., Hui, C.C., and Hew, C.L.	Presence of isl-1-related LIM domain homeobox genes in teleost and their similar patterns of expression in brain and spinal cord	J. Biol. Chem.	1995	270	3335-3345	
ZDB-PUB-961107-3	8702867	Eder, P.S., Srinivasan, A., Fishman, M.C., and Altman, S.	The RNA subunit of ribonuclease P from the zebrafish, Danio rerio	J. Biol. Chem.	1996	271(35)	21031-21036	
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ZDB-PUB-990824-48	10438471	Rubin, D.A., Hellman, P., Zon, L.I., Lobb, C.J., Bergwitz, C., and Juppner, H.	A G protein-coupled receptor from zebrafish is activated by human parathyroid hormone and not by human or teleost parathyroid hormone-related peptide. Implications for the evolutionary conservation of calcium-regulating peptide hormones	J. Biol. Chem.	1999	274(33)	23035-23042	
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ZDB-PUB-091221-8	20007318	Sun, H., Li, D., Chen, S., Liu, Y., Liao, X., Deng, W., Li, N., Zeng, M., Tao, D., and Ma, Y.	Zili Inhibits TGF-beta Signaling by Interacting with Smad4	J. Biol. Chem.	2010	285(6)	4243-4250	
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ZDB-PUB-020220-17	11823471	Andreasen, E.A., Tanguay, R.L., Peterson, R.E., and Heideman, W.	Identification of a critical amino acid in the Aryl hydrocarbon receptor	J. Biol. Chem.	2002	277(15)	13210-13218	
ZDB-PUB-030117-3	12464617	Masumoto, J., Zhou, W., Chen, F.F., Su, F., Kuwada, J.Y., Hidaka, E., Katsuyama, T., Sagara, J., Taniguchi, S., Ngo-Hazelett, P., Postlethwait, J.H., Nuñez, G., and Inohara, N.	Caspy: A Zebrafish caspase activated by ASC oligomerization required for pharyngeal Arch development	J. Biol. Chem.	2002	278(6)	4268-4276	
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ZDB-PUB-031031-3	14583621	Zoidl, G., Bruzzone, R., Weickert, S., Kremer, M., Zoidl, C., Mitropoulou, G., Srinivas, M., Spray, D.C., and Dermietzel, R.	Molecular cloning and functional expression of zfCx52.6, a novel connexin with hemichannel forming properties expressed in the zebrafish retina	J. Biol. Chem.	2004	279(4)	2913-2921	
ZDB-PUB-040225-6	14966125	Luo, W., Williams, J., Smallwood, P.M., Touchman, J.W., Roman, L.M., and Nathans, J.	Proximal and distal sequences control UV cone pigment gene expression in transgenic zebrafish	J. Biol. Chem.	2004	279(18)	19286-19293	
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ZDB-PUB-041122-6	15550380	Li, Y., Xiang, J., and Duan, C.	Insulin-like growth factor binding protein-3 (IGFBP-3) plays an important role in regulating pharyngeal skeleton and inner ear formation and differentiation	J. Biol. Chem.	2005	280(5)	3613-3620	
ZDB-PUB-050125-2	15657039	Appelbaum, L. Anzulovich, A., Baler, R., and Gothilf, Y.	Homeobox-clock protein interaction in zebrafish: A shared mechanism for pineal-specific and circadian gene expression	J. Biol. Chem.	2005	280(12)	11544-11551	
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ZDB-PUB-060323-23	16543226	Jensen, P.J., Gitlin, J.D., and Carayannopoulos, M.O.	Glut1 deficiency links nutrient availability and apoptosis during embryonic development	J. Biol. Chem.	2006	281(19)	13382-13387	
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ZDB-PUB-061021-1	17003037	Song, R., Koo, B.K., Yoon, K.J., Yoon, M.J., Yoo, K.W., Kim, H.T., Oh, H.J., Kim, Y.Y., Han, J.K., Kim, C.H., and Kong, Y.Y.	Neuralized-2 regulates notch ligand in cooperation with mind bomb-1	J. Biol. Chem.	2006	281(47)	36391-36400	
ZDB-PUB-061229-4	17170113	Schiffer, N.W., Broadley, S.A., Hirschberger, T., Tavan, P., Kretzschmar, H.A.,Giese, A., Haass, C., Hartl, U.F., and Schmid, B.	Identification of anti-prion compounds as efficient inhibitors of polyglutamine protein aggregation in a zebrafish model	J. Biol. Chem.	2007	282(12)	9195-9203	
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ZDB-PUB-071118-34	17984093	Shankaran, S.S., Capell, A., Hruscha, A.T., Fellerer, K., Neumann, M., Schmid, B., and Haass, C.	FTLD-U linked missense mutations in the progranulin gene reduce progranulin production and secretion	J. Biol. Chem.	2008	283(3)	1744-1753	
ZDB-PUB-071125-22	18025082	Jia, S., Ren, Z., Li, X., Zheng, Y., and Meng, A.	Smad2 and Smad3 are required for mesendoderm induction by TGF-beta /Nodal signals in zebrafish	J. Biol. Chem.	2008	283(4)	2418-2426	
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ZDB-PUB-080826-12	18701462	Feng, S., Okenka, G.M., Bai, C.X., Streets, A.J., Newby, L.J., Dechant, B.T., Tsiokas, L., Obara, T., and Ong, A.C.	Identification and functional characterisation of an N-terminal oligomerisation domain for polycystin-2	J. Biol. Chem.	2008	283(42)	28471-28479	
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ZDB-PUB-071001-19	17893246	Wyatt, L., Wadham, C., Crocker, L.A., Lardelli, M., and Khew-Goodall, Y.	The protein tyrosine phosphatase Pez regulates TGF{beta}, epithelial mesenchymal transition, and organ development	J. Cell Biol.	2007	178(7)	1223-1235	
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ZDB-PUB-990420-4	10198286	Collas, P., Liang, M.R., Vincent, M., and Aleström, P.	Active transgenes in zebrafish are enriched in acetylated histone H4 and dynamically associate with RNA Pol II and splicing complexes	J. Cell. Sci.	1999	112	1045-1054	
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ZDB-PUB-000201-10	10625541	Hashimoto, H., Itoh, M., Yamanaka, Y., Yamashita, S., Shimizu, T., Solnica-Krezel, L., Hibi, M., and Hirano, T.	Zebrafish Dkk1 functions in forebrain specification and axial mesendoderm formation	Developmental biology	2000	217(1)	138-152	
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ZDB-PUB-000309-33	10694427	Odenthal, J., van Eeden, F.J., Haffter, P., Ingham, P.W., and Nüsslein-Volhard, C.	Two distinct cell populations in the floor plate of the zebrafish are induced by different pathways	Developmental biology	2000	219(2)	350-363	
ZDB-PUB-000309-45	10656766	Griffin, K.J., Stoller, J., Gibson, M., Chen, S., Yelon, D., Stainier, D.Y., and Kimelman, D.	A conserved role for H15-related T-Box transcription factors in zebrafish and Drosophila heart formation	Developmental biology	2000	218(2)	235-247	
ZDB-PUB-000505-11	10772802	Bernhardt, R.R. and Schachner, M.	Chondroitin sulfates affect the formation of the segmental motor nerves in zebrafish embryos	Developmental biology	2000	221(1)	206-219	
ZDB-PUB-000623-7	10837124	Poss, K.D., Shen, J., Nechiporuk, A., McMahon, G., Thisse, B., Thisse, C., and Keating, M.T.	Roles for Fgf signaling during zebrafish fin regeneration	Developmental biology	2000	222(2)	347-358	
ZDB-PUB-000824-3	10882520	Bellipanni, G., Murakami, T., Doerre, O.G., Andermann, P., and Weinberg, E.S.	Expression of Otx homeodomain proteins induces cell aggregation in developing zebrafish embryos	Developmental biology	2000	223(2)	339-353	
ZDB-PUB-001017-2	10985854	Piotrowski, T. and Nüsslein-Volhard, C.	The endoderm plays an important role in patterning the segmented pharyngeal region in zebrafish (Danio rerio)	Developmental biology	2000	225(2)	339-356	
ZDB-PUB-001201-1	11071756	Parichy, D.M., Mellgren, E.M., Rawls, J.F., Lopes, S.S., Kelsh, R.N., and Johnson, S.L.	Mutational analysis of endothelin receptor b1 (rose) during neural crest and pigment pattern development in the zebrafish Danio rerio	Developmental biology	2000	227(2)	294-306	
ZDB-PUB-001205-15	11071763	Chin, A.J., Tsang, M., and Weinberg, E.S.	Heart and gut chiralities are controlled independently from initial heart position in the developing zebrafish	Developmental biology	2000	227(2)	403-421	
ZDB-PUB-010130-3	11133165	Zhao, Z.X., Cao, Y., Li, M., and Meng, A.M.	Double-stranded RNA injection produces nonspecific defects in zebrafish	Developmental biology	2001	229(1)	215-223	
ZDB-PUB-010102-1	11087624	Muraoka, O., Ichikawa, H., Shi, H., Okumura, S., Taira, E., Higuchi, H., Hirano, T., Hibi, M., and Miki, N.	Kheper, a novel ZFH/dEF1 family member, regulates the development of the neuroectoderm of zebrafish (Danio rerio)	Developmental biology	2000	228(1)	29-40	
ZDB-PUB-010205-1	11180959	Chiang, E., Pai, C.-I., Wyatt, M., Yan, Y-L., Postlethwait, J., and Chung, B.-C.	Two sox9 genes on duplicated zebrafish chromosomes: expression of similar transcription activators in distinct sites	Developmental biology	2001	229	149-163	
ZDB-PUB-010205-4	11161572	Biemar, F., Argenton, F., Schmidtke, R., Epperlein, S., Peers, B., and Driever, W.	Pancreas development in zebrafish: early dispersed appearance of endocrine hormone expressing cells and their convergence to form the definitive islet	Developmental biology	2001	230(2)	189-203	
ZDB-PUB-010306-9	11237468	Ryu, S.-L., Fujii, R., Yamanaka, Y., Shimizu, T., Yabe, T., Hirata, T., Hibi, M., and Hirano, T.	Regulation of dharma/bozozok by the Wnt Pathway	Developmental biology	2001	231(2)	397-409	
ZDB-PUB-010604-2	11412029	Ott, H., Diekmann, H., Stürmer, C.A.O., and Bastmeyer, M.	Function of neurolin (DM-GRASP/SC-1) in guidance of motor axons during zebrafish development	Developmental biology	2001	235(1)	86-97	
ZDB-PUB-010705-7	11456450	Coutelle, O., Blagden, C.S., Hampson, R., Halai, C., Rigby, P.W.J., and Hughes, S.M.	Hedgehog signalling is required for maintenance of myf5 and myoD expression and timely terminal differentiation in zebrafish adaxial myogenesis	Developmental biology	2001	236(1)	136-150	
ZDB-PUB-010813-2	11543616	Gray, M., Moens, C.B., Amacher, S.L., Eisen, J.S., and Beattie, C.E.	Zebrafish deadly seven functions in neurogenesis	Developmental biology	2001	237(2)	306-323	
ZDB-PUB-011210-1	11071752	Bowles, J., Schepers, G., and Koopman, P.	Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators	Developmental biology	2000	227(2)	239-255	
ZDB-PUB-020115-2	11784107	Dorsky, R.I., Sheldahl, L.C., and Moon, R.T.	A transgenic Lef1/beta-catenin-dependent reporter is expressed in spatially restricted domains throughout zebrafish development	Developmental biology	2002	241(2)	229-237	
ZDB-PUB-020122-1	11820808	Jesuthasan, S. and Subburaju, S.	Gene transfer into zebrafish by sperm nuclear transplantation	Developmental biology	2002	242(2)	88-95	
ZDB-PUB-020128-4	11846479	Myers, D., Sepich, D., and Solnica-Krezel, L.	Bmp activity gradient regulates convergent extension during zebrafish gastrulation	Developmental biology	2002	243(1)	81-98	
ZDB-PUB-020319-1	11900455	Koshida, S., Shinya, M., Nikaido, M., Ueno, N., Schulte-Merker, S., Kuroiwa, A., and Takeda, H.	Inhibition of BMP activity by the FGF signal promotes posterior neural development in zebrafish	Developmental biology	2002	244(1)	9-20	
ZDB-PUB-020605-7	11969259	Wagner, D.S., and Mullins, M.C.	Modulation of BMP activity in dorsal-ventral pattern formation by the Chordin and Ogon antagonists	Developmental biology	2002	245(1)	109-123	
ZDB-PUB-020703-1	12086467	Wu, W. and Kinsey, W.H.	Role of PTPase(s) in regulating Fyn kinase at fertilization of the zebrafish egg	Developmental biology	2002		6-294	
ZDB-PUB-020812-2	12167410	Park, H.-C., Mehta, A., Richardson, J.S., and Appel, B.	olig2 is required for zebrafish primary motor neuron and oligodendrocyte development	Developmental biology	2002	248(2)	356-368	
ZDB-PUB-021016-11	12376102	Kramer, C., Mayr, T., Nowak, M., Schumacher, J., Runke, G., Bauer, H., Wagner, D., Schmid, B., Imai, Y., Talbot, W., Mullins, M., and Hammerschmidt, M.	Maternally supplied smad5 is required for ventral specification in zebrafish embryos prior to zygotic bmp signaling	Developmental biology	2002	250(2)	263-279	
ZDB-PUB-030210-1	12482711	Murciano,C., Fernández, T.D., Durán, I., Maseda, D., Riuz-Sánchez, J., Becerra, J., Akimenko, M.-A., and Marí-Beffa, M.	Ray-interray interactions during fin regeneration of Danio rerio	Developmental biology	2002	252(2)	4-224	
ZDB-PUB-030304-3	12606280	Herzog, W., Zeng, X., Lele, Z., Sonntag, C., Ting, J.W., Chang, C.Y., and Hammerschmidt, M.	Adenohypophysis formation in the zebrafish and its dependence on sonic hedgehog	Developmental biology	2003	254(1)	36-49	
ZDB-PUB-030312-9	12618133	Brownlie, A., Hersey, C., Oates, A.C., Paw, B.H., Falick, A.M., Witkowska, H.E., Flint,J., Higgs, D., Jessen, J., Bahary, N., Zhu, H., Lin, S. and Zon, L.	Characterization of embryonic globin genes of the zebrafish	Developmental biology	2003	255(1)	48-61	
ZDB-PUB-030325-1	12645931	Field, H.A., Ober, E.A., Roeser, T., and Stainier, D.Y.	Formation of the digestive system in zebrafish. I. Liver morphogenesis	Developmental biology	2003	253(2)	279-290	
ZDB-PUB-030408-17	12654288	Udvadia, A.J. and Linney, E.	Windows into development: historic, current, and future perspectives on transgenic zebrafish	Developmental biology	2003	256(1)	1-17	
ZDB-PUB-030514-2	12710962	Sato, M. and Yost, H.J.	Cardiac neural crest contributes to cardiomyogenesis in zebrafish	Developmental biology	2003	257(1)	127-139	
ZDB-PUB-030702-4	12812791	Malicki, J., Jo, H., and Pujic, Z.	Zebrafish N-cadherin, encoded by the glass onion locus, plays an essential role in retinal patterning	Developmental biology	2003	259(1)	95-108	
ZDB-PUB-030716-20	12798293	Stenkamp, D.L. and Frey, R.A.	Extraretinal and retinal hedgehog signaling sequentially regulate retinal differentiation in zebrafish	Developmental biology	2003	258(2)	349-363	
ZDB-PUB-030730-8	12885555	Martyn, U. and Schulte-Merker, S.	The ventralized ogon mutant phenotype is caused by a mutation in the zebrafish homologue of Sizzled, a secreted Frizzled-related protein	Developmental biology	2003	260(1)	58-67	
ZDB-PUB-030924-5	14499652	Sumanas, S., Larson, J.D., and Miller Bever, M.	Zebrafish chaperone protein GP96 is required for otolith formation during ear development	Developmental biology	2003	261(2)	443-455	
ZDB-PUB-030929-1	14499642	Riley, B.B. and Phillips, B.T.	Ringing in the new ear: resolution of cell interactions in otic development	Developmental biology	2003	261(2)	289-312	
ZDB-PUB-031009-1	14550794	Hsiao, C.-D. and Tsai, H.-J.	Transgenic zebrafish with fluorescent germ cell: a useful tool to visualize germ cell proliferation and juvenile hermaphroditism in vivo	Developmental biology	2003	262	313-323	
ZDB-PUB-031014-6	14550789	Runko, A.P. and Sagerström, C.G.	Nlz belongs to a family of zinc-finger-containing repressors and controls segmental gene expression in the zebrafish hindbrain	Developmental biology	2003	262(2)	254-267	
ZDB-PUB-031119-5	14623232	Fisher, S., Jagadeeswaran, P., and Halpern, M.	Radiographic analysis of zebrafish skeletal defects	Developmental biology	2003	264(1)	64-76	
ZDB-PUB-031204-1	14651935	Walshe, J. and Mason, I.	Fgf signalling is required for formation of cartilage in the head	Developmental biology	2003	264(2)	522-536	
ZDB-PUB-040223-1	14975724	Nambiar, R.M., and Henion, P.D.	Sequential antagonism of early and late Wnt-signaling by zebrafish colgate promotes dorsal and anterior fates	Developmental biology	2004	267(1)	165-80	
ZDB-PUB-040312-3	15013799	Chen, W., and Casey Corliss, D.	Three modules of zebrafish Mind bomb work cooperatively to promote Delta ubiquitination and endocytosis.	Developmental biology	2004	267(2)	361-373	
ZDB-PUB-040322-4	15031114	Zecchin, E., Mavropoulos, A., Devos, N., Filippi, A., Tiso, N., Meyer, D., Peers, B., Bortolussi, M., Argenton, F.	Evolutionary conserved role of ptf1a in the specification of exocrine pancreatic fates	Developmental biology	2004	268(1)	174-184	
ZDB-PUB-040408-4	15063174	Wendik, B., Maier, E., and Meyer, D.	Zebrafish mnx genes in endocrine and exocrine pancreas formation	Developmental biology	2004	268(2)	372-383	
ZDB-PUB-040415-3	15081375	Mawdsley, D.J., Cooper, H.M., Hogan, B.M., Cody, S.H., Lieschke, G.J., and Heath, J.K.	The Netrin receptor Neogenin is required for neural tube formation and somitogenesis in zebrafish	Developmental biology	2004	269(1)	302-315	
ZDB-PUB-040429-2	15110720	Spieler, D., Bäumer, N., Stebler, J., Köprunner, M., Reichman-Fried, M., Teichmann, U., Raz, E., Kessel, M., and Wittler, L.	Involvement of Pax6 and Otx2 in the forebrain-specific regulation of the vertebrate homeobox gene ANF/Hesx1	Developmental biology	2004	269(2)	567-579	
ZDB-PUB-040514-9	15136149	Linville, A., Gumusaneli, E., Chandraratna, R.A., and Schilling, T.F.	Independent roles for retinoic acid in segmentation and neuronal differentiation in the zebrafish hindbrain	Developmental biology	2004	270(1)	186-199	
ZDB-PUB-040617-6	15196960	Krovel, A.V., and Olsen, L.C.	Sexual dimorphic expression pattern of a splice variant of zebrafish vasa during gonadal development	Developmental biology	2004	271(1)	190-197	
ZDB-PUB-040826-8	15328015	Rodino-Klapac, L.R., and Beattie, C.E.	Zebrafish topped is required for ventral motor axon guidance	Developmental biology	2004	273(2)	308-320	
ZDB-PUB-041004-6	15385162	Thummel, R., Li, L., Tanase, C., Sarras, M.P. Jr., and Godwin, A.R.	Differences in expression pattern and function between zebrafish hoxc13 orthologs: recruitment of Hoxc13b into an early embryonic role.	Developmental biology	2004	274(2)	318-333	
ZDB-PUB-041115-7	15531360	Streit, A.	Early development of the cranial sensory nervous system: from a common field to individual placodes	Developmental biology	2004	276(1)	1-15	
ZDB-PUB-041202-6	15572152	Leung, A.Y., Mendenhall, E.M., Kwan, T.T., Liang, R., Eckfeldt, C., Chen, E., Hammerschmidt, M., Grindley, S., Ekker, S.C., and Verfaillie, C.M.	Characterization of expanded intermediate cell mass in zebrafish chordin morphant embryos	Developmental biology	2005	277(1)	235-254	
ZDB-PUB-041208-7	15581873	Hughes, I., Blasiole, B., Huss, D., Warchol, M.E., Rath, N.P., Hurle, B., Ignatova, E., David Dickman, J., Thalmann, R., Levenson, R., and Ornitz, D.M.	Otopetrin 1 is required for otolith formation in the zebrafish Danio rerio	Developmental biology	2004	276(2)	391-402	
ZDB-PUB-041228-20	15617681	Le Guyader, S., Maier, J., and Jesuthasan, S.	Esrom, an ortholog of PAM (protein associated with c-myc), regulates pteridine synthesis in the zebrafish	Developmental biology	2005	277(2)	378-386	
ZDB-PUB-050202-1	15680355	Hernandez-Lagunas, L., Choi, I.F., Kaji, T., Simpson, P., Hershey, C., Zhou, Y., Zon, L., Mercola, M., and Artinger, K.B.	Zebrafish narrowminded disrupts the transcription factor prdm1 and is required for neural crest and sensory neuron specification	Developmental biology	2005	278(2)	347-357	
ZDB-PUB-050202-4	15680372	Uemura, O., Okada, Y., Ando, H., Guedj, M., Higashijima, S., Shimazaki, T., Chino, N., Okano, H., and Okamoto, H.	Comparative functional genomics revealed conservation and diversification of three enhancers of the isl1 gene for motor and sensory neuron-specific expression	Developmental biology	2005	278(2)	587-606	
ZDB-PUB-050215-5	15708554	Londin, E.R., Niemiec, J., and Sirotkin, H.I.	Chordin, FGF signaling, and mesodermal factors cooperate in zebrafish neural induction	Developmental biology	2005	279(1)	1-19	
ZDB-PUB-050215-8	15708567	Garriock, R.J., D'Agostino, S.L., Pilcher, K.C., and Krieg, P.A.	Wnt11-R, a protein closely related to mammalian Wnt11, is required for heart morphogenesis in Xenopus	Developmental biology	2005	279(1)	179-192	
ZDB-PUB-050318-12	15766754	Oates, A.C., Mueller, C., and Ho, R.K.	Cooperative function of deltaC and her7 in anterior segment formation	Developmental biology	2005	280(1)	133-149	
ZDB-PUB-050427-5	15848388	Wehman, A.M., Staub, W., Meyers, J.R., Raymond, P.A., and Baier, H.	Genetic dissection of the zebrafish retinal stem-cell compartment	Developmental biology	2005	281(1)	53-65	
ZDB-PUB-050513-4	15882862	Formstone, C.J., and Mason, I. 	Combinatorial activity of Flamingo proteins directs convergence and extension within the early zebrafish embryo via the planar cell polarity pathway	Developmental biology	2005	282(2)	320-335	
ZDB-PUB-050518-14	15893977	Zhu, H., Traver, D., Davidson, A.J., Dibiase, A., Thisse, C., Thisse, B., Nimer, S., and Zon, L.I.	Regulation of the lmo2 promoter during hematopoietic and vascular development in zebrafish	Developmental biology	2005	281(2)	256-269	
ZDB-PUB-050518-2	15890329	Vanderlaan, G., Tyurina, O.V., Karlstrom, R.O., and Chandrasekhar, A.	Gli function is essential for motor neuron induction in zebrafish	Developmental biology	2005	282(2)	550-570	
ZDB-PUB-050602-3	15913596	Nakano, T., Windrem, M., Zappavigna, V., and Goldman, S.A.	Identification of a conserved 125 base-pair Hb9 enhancer that specifies gene expression to spinal motor neurons	Developmental biology	2005	283(2)	474-485	
ZDB-PUB-050607-18	15936346	Cha, Y.I., Kim, S.H., Solnica-Krezel, L., and Dubois, R.N.	Cyclooxygenase-1 signaling is required for vascular tube formation during development	Developmental biology	2005	282(1)	274-283	
ZDB-PUB-050818-17	16102746	Kramer-Zucker, A.G., Wiessner, S., Jensen, A.M., and Drummond, I.A.	Organization of the pronephric filtration apparatus in zebrafish requires Nephrin, Podocin and the FERM domain protein Mosaic eyes	Developmental biology	2005	285(2)	316-329	
ZDB-PUB-050831-9	16125692	Julich, D., Hwee, Lim C., Round, J., Nicolaije, C., Schroeder, J., Davies, A., Geisler, R., Lewis, J., Jiang, Y.J., Holley, S.A.; Tubingen 2000 Screen Consortium.	beamter/deltaC and the role of Notch ligands in the zebrafish somite segmentation, hindbrain neurogenesis and hypochord differentiation	Developmental biology	2005	286(2)	391-404	
ZDB-PUB-051012-21	16216234	Ramel, M.C., Buckles, G.R., Baker, K.D., and Lekven, A.C.	WNT8 and BMP2B co-regulate non-axial mesoderm patterning during zebrafish gastrulation	Developmental biology	2005	287(2)	237-248	
ZDB-PUB-051019-10	16226737	Ando, H., Kobayashi, M., Tsubokawa, T., Uyemura, K., Furuta, T., and Okamoto, H.	Lhx2 mediates the activity of Six3 in zebrafish forebrain growth	Developmental biology	2005	287(2)	456-468	
ZDB-PUB-051207-10	16316642	Hamade, A., Deries, M., Begemann, G., Bally-Cuif, L., Genet, C., Sabatier, F., Bonnieu, A., and Cousin, X.	Retinoic acid activates myogenesis in vivo through Fgf8 signalling	Developmental biology	2006	289(1)	127-140	
ZDB-PUB-051221-4	16364284	Lister, J.A., Cooper, C., Nguyen, K., Modrell, M., Grant, K., and Raible, D.W.	Zebrafish Foxd3 is required for development of a subset of neural crest derivatives	Developmental biology	2006	290(1)	92-104	
ZDB-PUB-060210-5	16457800	Davidson, A.J., and Zon, L.I.	The caudal-related homeobox genes cdx1a and cdx4 act redundantly to regulate hox gene expression and the formation of putative hematopoietic stem cells during zebrafish embryogenesis	Developmental biology	2006	292(2)	506-518	
ZDB-PUB-060327-2	16554046	Dingwell, K.S., and Smith, J.C.	Tes regulates neural crest migration and axial elongation in Xenopus	Developmental biology	2006	293(1)	252-267	
ZDB-PUB-060424-5	16626681	Hollway, G.E., Maule, J., Gautier, P., Evans, T.M., Keenan, D.G., Lohs, C., Fischer, D., Wicking, C., and Currie, P.D.	Scube2 mediates Hedgehog signalling in the zebrafish embryo	Developmental biology	2006	294(1)	104-118	
ZDB-PUB-060501-3	16631154	Phillips, B.T., Kwon, H.J., Melton, C., Houghtaling, P., Fritz, A., and Riley, B.B.	Zebrafish msxB, msxC and msxE function together to refine the neural-nonneural border and regulate cranial placodes and neural crest development	Developmental biology	2006	294(2)	376-390	
ZDB-PUB-060517-12	16682018	Grandel, H., Kaslin, J., Ganz, J., Wenzel, I., and Brand, M.	Neural stem cells and neurogenesis in the adult zebrafish brain: Origin, proliferation dynamics, migration and cell fate	Developmental biology	2006	295(1)	263-277	
ZDB-PUB-060719-8	16828077	Rentzsch, F., Anton, R., Saina, M., Hammerschmidt, M., Holstein, T.W., and Technau, U.	Asymmetric expression of the BMP antagonists chordin and gremlin in the sea anemone Nematostella vectensis: Implications for the evolution of axial patterning	Developmental biology	2006	296(2)	375-387	
ZDB-PUB-060731-6	16860789	Sato, M., Tsai, H.J., and Yost, H.J.	Semaphorin3D regulates invasion of cardiac neural crest cells into the primary heart field	Developmental biology	2006	298(1)	12-21	
ZDB-PUB-060906-22	16949569	Lee, B.C., and Roy, S.	Blimp-1 is an essential component of the genetic program controlling development of the pectoral limb bud	Developmental biology	2006	300(2)	623-634	
ZDB-PUB-060911-6	16959235	Erickson, T., Scholpp, S., Brand, M., Moens, C.B., and Waskiewicz, A. Jan	Pbx proteins cooperate with Engrailed to pattern the midbrain-hindbrain and diencephalic-mesencephalic boundaries	Developmental biology	2007	301(2)	504-517	
ZDB-PUB-060921-16	16973147	Semina, E.V., Bosenko, D.V., Zinkevich, N.C., Soules, K.A., Hyde, D.R., Vihtelic, T.S., Willer, G.B., Gregg, R.G., and Link, B.A.	Mutations in laminin alpha 1 result in complex, lens-independent ocular phenotypes in zebrafish	Developmental biology	2006	299(1)	63-77	
ZDB-PUB-060927-11	16999953	Covassin, L., Amigo, J.D., Suzuki, K., Teplyuk, V., Straubhaar, J., and Lawson, N.D.	Global analysis of hematopoietic and vascular endothelial gene expression by tissue specific microarray profiling in zebrafish	Developmental biology	2006	299(2)	551-562	
ZDB-PUB-061020-47	17045256	Schafer, M., Kinzel, D., and Winkler, C.	Discontinuous organization and specification of the lateral floor plate in zebrafish	Developmental biology	2007	301(1)	117-129	
ZDB-PUB-061031-7	17059815	Zecchin, E., Filippi, A., Biemar, F., Tiso, N., Pauls, S., Ellertsdottir, E., Gnugge, L., Bortolussi, M., Driever, W., and Argenton, F.	Distinct delta and jagged genes control sequential segregation of pancreatic cell types from precursor pools in zebrafish	Developmental biology	2007	301(1)	192-204	
ZDB-PUB-061227-15	17137573	Lecaudey, V., Ulloa, E., Anselme, I., Stedman, A., Schneider-Maunoury, S., and Pujades C.	Role of the hindbrain in patterning the otic vesicle: A study of the zebrafish vhnf1 mutant	Developmental biology	2007	303(1)	134-143	
ZDB-PUB-061227-18	17141209	Wehman, A.M., Staub, W., and Baier, H.	The anaphase-promoting complex is required in both dividing and quiescent cells during zebrafish development	Developmental biology	2007	303(1)	144-156	
ZDB-PUB-070122-23	17208216	Lin, X., Rinaldo, L., Fazly, A.F., and Xu, X.	Depletion of Med10 enhances Wnt and suppresses Nodal signaling during zebrafish embryogenesis	Developmental biology	2007	303(2)	536-548	
ZDB-PUB-070212-42	17289013	diIorio, P., Alexa, K., Choe, S.K., Etheridge, L., and Sagerström, C.G.	TALE-Family homeodomain proteins regulate endodermal sonic hedgehog expression and pattern the anterior endoderm	Developmental biology	2007	304(1)	221-231	
ZDB-PUB-070212-7	17258701	Roszko, I., Faure, P., and Mathis, L.	Stem cell growth becomes predominant while neural plate progenitor pool decreases during spinal cord elongation	Developmental biology	2007	304(1)	232-245	
ZDB-PUB-070310-3	17335795	Pauls, S., Zecchin, E., Tiso, N., Bortolussi, M., and Argenton, F.	Function and regulation of zebrafish nkx2.2a during development of pancreatic islet and ducts	Developmental biology	2007	304(2)	875-890	
ZDB-PUB-070330-12	17362906	Schlueter, P.J., Sang, X., Duan, C., and Wood, A.W.	Insulin-like growth factor receptor 1b is required for zebrafish primordial germ cell migration and survival	Developmental biology	2007	305(1)	377-387	
ZDB-PUB-070409-7	17395172	Chocron, S., Verhoeven, M.C., Rentzsch, F., Hammerschmidt, M., and Bakkers, J.	Zebrafish Bmp4 regulates left-right asymmetry at two distinct developmental time points	Developmental biology	2007	305(2)	577-588	
ZDB-PUB-070513-17	17485198	Berghmans, S., Hunt, J., Roach, A., and Goldsmith, P.	Zebrafish offer the potential for a primary screen to identify a wide variety of potential anticonvulsants	Developmental biology	2007	75(1)	18-28	
ZDB-PUB-070614-17	17531218	Jin, S.W., Herzog, W., Santoro, M.M., Mitchell, T.S., Frantsve, J., Jungblut, B., Beis, D., Scott, I.C., D'Amico, L.A., Ober, E.A., Verkade, H., Field, H.A., Chi, N.C., Wehman, A.M., Baier, H., and Stainier, D.Y.	A transgene-assisted genetic screen identifies essential regulators of vascular development in vertebrate embryos	Developmental biology	2007	307(1)	29-42	
ZDB-PUB-070625-4	17543296	Grima, R., and Schnell, S.	Can tissue surface tension drive somite formation?	Developmental biology	2007	307(2)	248-257	
ZDB-PUB-070629-29	17586488	Etard, C., Behra, M., Fischer, N., Hutcheson, D., Geisler, R., and Strähle, U.	The UCS factor Steif/Unc-45b interacts with the heat shock protein Hsp90a during myofibrillogenesis	Developmental biology	2007	308(1)	133-143	
ZDB-PUB-070813-30	17689522	Daggett, D.F., Domingo, C.R., Currie, P.D., and Amacher, S.L.	Control of morphogenetic cell movements in the early zebrafish myotome	Developmental biology	2007	309(2)	169-179	
ZDB-PUB-070820-2	17692837	McCollum, C.W., Amin, S.R., Pauerstein, P., and Lane, M.E.	A zebrafish LMO4 ortholog limits the size of the forebrain and eyes through negative regulation of six3b and rx3	Developmental biology	2007	309(2)	373-385	
ZDB-PUB-070907-29	17765888	Amack, J.D., Wang, X., and Yost, H.J.	Two T-box genes play independent and cooperative roles to regulate morphogenesis of ciliated Kupffer's vesicle in zebrafish	Developmental biology	2007	310(2)	196-210	
ZDB-PUB-070912-10	17826762	Warga, R.M., and Kane, D.A.	A role for N-cadherin in mesodermal morphogenesis during gastrulation	Developmental biology	2007	310(2)	211-225	
ZDB-PUB-070920-17	17869240	Peterkin, T., Gibson, A., and Patient, R.	Redundancy and evolution of GATA factor requirements in development of the myocardium	Developmental biology	2007	311(2)	623-635	
ZDB-PUB-071118-20	17977526	Murciano, C., Pérez-Claros, J., Smith, A., Avaron, F., Fernández, T.D., Durán, I., Ruiz-Sánchez, J., García, F., Becerra, J., Akimenko, M.A., and Marí-Beffa, M.	Position dependence of hemiray morphogenesis during tail fin regeneration in Danio rerio	Developmental biology	2007	312(1)	272-283	
ZDB-PUB-071118-4	16464444	Kim, J., and Lauderdale, J.D.	Analysis of Pax6 expression using a BAC transgene reveals the presence of a paired-less isoform of Pax6 in the eye and olfactory bulb	Developmental biology	2006	292(2)	486-505	
ZDB-PUB-071129-3	18037399	Volkmann, K., Rieger, S., Babaryka, A., and Köster, R.W.	The zebrafish cerebellar rhombic lip is spatially patterned in producing granule cell populations of different functional compartments	Developmental biology	2008	313(1)	167-180	
ZDB-PUB-071210-39	18061159	Devine, C.A., and Key, B.	Robo-Slit interactions regulate longitudinal axon pathfinding in the embryonic vertebrate brain	Developmental biology	2008	313(1)	371-383	
ZDB-PUB-071219-5	18068699	Ignatius, M.S., Moose, H.E., El-Hodiri, H.M., and Henion, P.D.	colgate/hdac1 repression of foxd3 expression is required to permit mitfa-dependent melanogenesis	Developmental biology	2008	313(2)	568-583	
ZDB-PUB-071227-13	18154948	Wilkins, S.J., Yoong, S., Verkade, H., Mizoguchi, T., Plowman, S.J., Hancock, J.F., Kikuchi, Y., Heath, J.K., and Perkins, A.C.	Mtx2 directs zebrafish morphogenetic movements during epiboly by regulating microfilament formation	Developmental biology	2008	314(1)	12-22	
ZDB-PUB-080124-10	18177854	Vinothkumar, S., Rastegar, S., Takamiya, M., Ertzer, R., and Strähle, U.	Sequential and cooperative action of Fgfs and Shh in the zebrafish retina	Developmental biology	2008	314(1)	200-214	
ZDB-PUB-080218-16	18206866	Serluca, F.C.	Development of the proepicardial organ in the zebrafish	Developmental biology	2008	315(1)	18-27	
ZDB-PUB-080226-7	18222420	Monteiro, R., van Dinther, M., Bakkers, J., Wilkinson, R., Patient, R., Ten Dijke, P., and Mummery, C.	Two novel type II receptors mediate BMP signalling and are required to establish left-right asymmetry in zebrafish	Developmental biology	2008	315(1)	55-71	
ZDB-PUB-080227-15	18261720	Moreno, T.A., Jappelli, R., Belmonte, J.C., and Kintner, C.	Retinoic acid regulation of the Mesp-Ripply feedback loop during vertebrate segmental patterning	Developmental biology	2008	315(2)	317-330	
ZDB-PUB-080228-10	18275946	Kiener, T.K., Selptsova-Friedrich, I., and Hunziker, W.	Tjp3/zo-3 is critical for epidermal barrier function in zebrafish embryos	Developmental biology	2008	316(1)	36-49	
ZDB-PUB-080228-7	18272146	Caicedo-Carvajal, C.E., and Shinbrot, T.	In silico zebrafish pattern formation	Developmental biology	2008	315(2)	397-403	
ZDB-PUB-080306-29	18304522	Insinna, C., Pathak, N., Perkins, B., Drummond, I., and Besharse, J.C.	The homodimeric kinesin, Kif17, is essential for vertebrate photoreceptor sensory outer segment development	Developmental biology	2008	316(1)	160-170	
ZDB-PUB-080306-37	18313658	Li, W.M., Webb, S.E., Chan, C.M., and Miller, A.L.	Multiple roles of the furrow deepening Ca(2+) transient during cytokinesis in zebrafish embryos	Developmental biology	2008	316(2)	228-248	
ZDB-PUB-080327-9	18358464	Sanek, N.A., and Grinblat, Y.	A novel role for zebrafish zic2a during forebrain development	Developmental biology	2008	317(1)	325-335	
ZDB-PUB-080414-12	18394596	Shin, C.H., Chung, W.S., Hong, S.K., Ober, E.A., Verkade, H., Field, H.A., Huisken, J., and Stainier, D.Y.	Multiple roles for Med12 in vertebrate endoderm development	Developmental biology	2008	317(2)	467-479	
ZDB-PUB-080415-14	18406403	Hoptak-Solga, A.D., Nielsen, S., Jain, I., Thummel, R., Hyde, D.R., and Iovine, M.K.	Connexin43 (GJA1) is required in the population of dividing cells during fin regeneration	Developmental biology	2008	317(2)	541-548	
ZDB-PUB-080422-14	18423594	McFarland, K.A., Topczewska, J.M., Weidinger, G., Dorsky, R.I., and Appel, B.	Hh and Wnt signaling regulate formation of olig2(+) neurons in the zebrafish cerebellum	Developmental biology	2008	318(1)	162-171	
ZDB-PUB-080429-10	18436206	Postel, R., Vakeel, P., Topczewski, J., Knöll, R., and Bakkers, J.	Zebrafish integrin-linked kinase is required in skeletal muscles for strengthening the integrin-ECM adhesion complex	Developmental biology	2008	318(1)	92-101	
ZDB-PUB-080512-6	18462713	Anderson, M.J., Pham, V.N., Vogel, A.M., Weinstein, B.M., and Roman, B.L.	Loss of unc45a precipitates arteriovenous shunting in the aortic arches	Developmental biology	2008	318(2)	258-267	
ZDB-PUB-080519-2	18479681	Lee, J., Willer, J.R., Willer, G.B., Smith, K., Gregg, R.G., and Gross, J.M.	Zebrafish blowout provides genetic evidence for Patched1-mediated negative regulation of Hedgehog signaling within the proximal optic vesicle of the vertebrate eye	Developmental biology	2008	319(1)	10-22	
ZDB-PUB-080610-3	18514184	Krens, S.F., He, S., Lamers, G.E., Meijer, A.H., Bakkers, J., Schmidt, T., Spaink, H.P., and Snaar-Jagalska, B.E.	Distinct functions for ERK1 and ERK2 in cell migration processes during zebrafish gastrulation	Developmental biology	2008	319(2)	370-383	
ZDB-PUB-080630-4	18572157	Dee, C.T., Hirst, C.S., Shih, Y.H., Tripathi, V.B., Patient, R.K., and Scotting, P.J.	Sox3 regulates both neural fate and differentiation in the zebrafish ectoderm	Developmental biology	2008	320(1)	289-301	
ZDB-PUB-080701-1	18585376	Yanicostas, C., Ernest, S., Dayraud, C., Petit, C., and Soussi-Yanicostas, N.	Essential requirement for zebrafish anosmin-1a in the migration of the posterior lateral line primordium	Developmental biology	2008	320(2)	469-479	
ZDB-PUB-080714-4	18602383	Emond, M.R., and Jontes, J.D.	Inhibition of protocadherin-alpha function results in neuronal death in the developing zebrafish	Developmental biology	2008	321(1)	175-187	
ZDB-PUB-080722-27	18639539	Marques, S.R., Lee, Y., Poss, K.D., and Yelon, D.	Reiterative roles for FGF signaling in the establishment of size and proportion of the zebrafish heart	Developmental biology	2008	321(2)	397-406	
ZDB-PUB-080825-31	18687323	Noël, E.S., Casal-Sueiro, A., Busch-Nentwich, E., Verkade, H., Dong, P.D., Stemple, D.L., and Ober, E.A.	Organ-specific requirements for Hdac1 in liver and pancreas formation	Developmental biology	2008	322(2)	237-250	
ZDB-PUB-080826-38	18718462	Targoff, K.L., Schell, T., and Yelon, D.	Nkx genes regulate heart tube extension and exert differential effects on ventricular and atrial cell number	Developmental biology	2008	322(2)	314-321	
ZDB-PUB-080902-26	18755178	Leung, T., Humbert, J.E., Stauffer, A.M., Giger, K.E., Chen, H., Tsai, H.J., Wang, C., Mirshahi, T., and Robishaw, J.D.	The orphan G protein-coupled receptor 161 is required for left-right patterning	Developmental biology	2008	323(1)	31-40	
ZDB-PUB-080902-32	18761336	Batista, M.F., and Lewis, K.E.	Pax2/8 act redundantly to specify glycinergic and GABAergic fates of multiple spinal interneurons	Developmental biology	2008	323(1)	88-97	
ZDB-PUB-081008-14	18835554	Rodriguez, F., Vacaru, A., Overvoorde, J., and den Hertog, J.	The receptor protein-tyrosine phosphatase, Dep1, acts in arterial/venous cell fate decisions in zebrafish development	Developmental biology	2008	324(1)	122-130	
ZDB-PUB-081022-39	18930041	Siegfried, K.R., and Nüsslein-Volhard, C.	Germ line control of female sex determination in zebrafish	Developmental biology	2008	324(2)	277-287	
ZDB-PUB-081029-13	18950614	Yoshinari, N., Ishida, T., Kudo, A., and Kawakami, A.	Gene expression and functional analysis of zebrafish larval fin fold regeneration	Developmental biology	2009	325(1)	71-81	
ZDB-PUB-081029-9	18948093	Liew, H.P., Choksi, S.P., Wong, K.N., and Roy, S.	Specification of vertebrate slow-twitch muscle fiber fate by the transcriptional regulator Blimp1	Developmental biology	2008	324(2)	226-235	
ZDB-PUB-081121-16	19013452	Sabel, J.L., d'Alençon, C., O'Brien, E.K., Otterloo, E.V., Lutz, K., Cuykendall, T.N., Schutte, B.C., Houston, D.W., and Cornell, R.A.	Maternal Interferon Regulatory Factor 6 is required for the differentiation of primary superficial epithelia in Danio and Xenopus embryos	Developmental biology	2009	325(1)	249-262	
ZDB-PUB-081217-16	19059233	Hilario, J., Rodino-Klapac, L.R., Wang, C., and Beattie, C.E.	Semaphorin 5A is a bifunctional axon guidance cue for axial motoneurons in vivo	Developmental biology	2009	326(1)	190-200	
ZDB-PUB-081217-24	19063878	Dalle Nogare, D.E., Pauerstein, P.T., and Lane, M.E.	G2 acquisition by transcription-independent mechanism at the zebrafish midblastula transition	Developmental biology	2009	326(1)	131-142	
ZDB-PUB-081217-8	19056374	Devine, C.A., Sbrogna, J.L., Guner, B., Osgood, M., Shen, M.C., and Karlstrom, R.O.	A dynamic Gli code interprets Hh signals to regulate induction, patterning, and endocrine cell specification in the zebrafish pituitary	Developmental biology	2009	326(1)	143-154	
ZDB-PUB-081218-30	19084513	Chan, T.M., Chao, C.H., Wang, H.D., Yu, Y.J., and Yuh, C.H.	Functional analysis of the evolutionarily conserved Cis-regulatory elements on the Sox17 gene in zebrafish	Developmental biology	2009	326(2)	456-470	
ZDB-PUB-090123-12	19152797	Stedman, A., Lecaudey, V., Havis, E., Anselme, I., Wassef, M., Gilardi-Hebenstreit, P., and Schneider-Maunoury, S.	A functional interaction between Irx and Meis patterns the anterior hindbrain and activates krox20 expression in rhombomere 3	Developmental biology	2009	327(2)	566-577	
ZDB-PUB-090123-9	19150347	Sims Jr, K., Eble, D.M., and Iovine, M.K.	Connexin43 regulates joint location in zebrafish fins	Developmental biology	2009	327(2)	410-418	
ZDB-PUB-090217-32	19210963	Yokoi, H., Yan, Y.L., Miller, M.R., Bremiller, R.A., Catchen, J.M., Johnson, E.A., and Postlethwait, J.H.	Expression profiling of zebrafish sox9 mutants reveals that Sox9 is required for retinal differentiation	Developmental biology	2009	329(1)	1-15	
ZDB-PUB-090319-13	19289112	Froehlicher, M., Liedtke, A., Groh, K., Lopez-Schier, H., Neuhauss, S.C., Segner, H., and Eggen, R.I.	Estrogen receptor subtype beta2 is involved in neuromast development in zebrafish (Danio rerio) larvae	Developmental biology	2009	330(1)	32-43	
ZDB-PUB-090407-18	19345201	Nagy, N., Mwizerwa, O., Yaniv, K., Carmel, L., Pieretti-Vanmarcke, R., Weinstein, B.M., and Goldstein, A.M.	Endothelial cells promote migration and proliferation of enteric neural crest cells via beta1 integrin signaling	Developmental biology	2009	330(2)	263-272	
ZDB-PUB-090429-13	19397905	Paridaen, J.T., Danesin, C., Elas, A.T., van de Water, S., Houart, C., and Zivkovic, D.	Apc1 is required for maintenance of local brain organizers and dorsal midbrain survival	Developmental biology	2009	331(2)	101-112	
ZDB-PUB-090616-28	19500562	McMahon, C., Gestri, G., Wilson, S.W., and Link, B.A.	Lmx1b is essential for survival of periocular mesenchymal cells and influences Fgf-mediated retinal patterning in zebrafish	Developmental biology	2009	332(2)	287-298	
ZDB-PUB-090629-20	19545559	French, C.R., Erickson, T., French, D.V., Pilgrim, D.B., and Waskiewicz, A.J.	Gdf6a is required for the initiation of dorsal-ventral retinal patterning and lens development	Developmental biology	2009	333(1)	37-47	
ZDB-PUB-090727-4	19615992	Emond, M.R., Biswas, S., and Jontes, J.D.	Protocadherin-19 is essential for early steps in brain morphogenesis	Developmental biology	2009	334(1)	72-83	
ZDB-PUB-090731-2	19631206	Anderson, R.M., Bosch, J.A., Goll, M.G., Hesselson, D., Dong, P.D., Shin, D., Chi, N.C., Shin, C.H., Schlegel, A., Halpern, M., and Stainier, D.Y.	Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration	Developmental biology	2009	334(1)	213-223	
ZDB-PUB-090814-7	19664615	Joshi, P., Liang, J.O., Dimonte, K., Sullivan, J., and Pimplikar, S.W.	Amyloid precursor protein is required for convergent-extension movements during Zebrafish development	Developmental biology	2009	335(1)	1-11	
ZDB-PUB-090914-33	19732764	Elsen, G.E., Choi, L.Y., Prince, V.E., and Ho, R.K.	The autism susceptibility gene met regulates zebrafish cerebellar development and facial motor neuron migration	Developmental biology	2009	335(1)	78-92	
ZDB-PUB-961014-1002	6352369	Schoots, A.F., Meijer, R.C., and Denuce, J.M.	Dopaminergic regulation of hatching in fish embryos	Developmental biology	1983	100	59-63	
ZDB-PUB-961014-1115	8045345	Thisse, C., Thisse, B., Halpern, M.E., and Postlethwait, J.H.	Goosecoid expression in neurectoderm and mesendoderm is disrupted in zebrafish cyclops gastrulas	Developmental biology	1994	164	420-429	
ZDB-PUB-961014-1131	7556938	Tokumoto, M., Gong, Z.Y., Tsubokawa, T., Hew, C.L., Uyemura, K., Hotta, Y., and Okamoto, H.	Molecular heterogeneity among primary motoneurons and within myotomes revealed by the differential mRNA expression of novel islet-1 homologs in embryonic zebrafish	Developmental biology	1995	171	578-589	
ZDB-PUB-961014-1134	7649385	Toyama, R., Curtiss, P.E., Otani, H., Kimura, M., Dawid, I.B., and Taira, M.	The LIM class homeobox gene lim5: implied role in CNS patterning in Xenopus and zebrafish	Developmental biology	1995	170	583-593	
ZDB-PUB-961014-198	8660880	Danos, M.C. and Yost, H.J.	Role of notochord in specification of cardiac left-right orientation in zebrafish and Xenopus	Developmental biology	1996	177	96-103	
ZDB-PUB-961014-431	8405668	Helde, K.A. and Grunwald, D.J.	The DVR-1 (Vg1) transcript of zebrafish is maternally supplied and distributed throughout the embryo	Developmental biology	1993	159	418-426	
ZDB-PUB-961014-586	3972184	Kimmel, C.B. and Law, R.D.	Cell lineage of zebrafish blastomeres. III. Clonal analysis of the blastula and gastrula stages	Developmental biology	1985	108	94-101	
ZDB-PUB-961014-597	627315	Kimmel, C.B., Sessions, S.K., and Kimmel, R.J.	Radiosensitivity and time of origin of Mauthner neuron in the zebra fish	Developmental biology	1978	62(2)	526-529	
ZDB-PUB-961014-708	8293887	Lin, S., Yang, S., and Hopkins, N.	lacZ expression in germline transgenic zebrafish can be detected in living embryos	Developmental biology	1994	161	77-83	
ZDB-PUB-961014-739	7781913	Martin, S.C., Marazzi, G., Sandell, J.H., and Heinrich, G.	Five Trk receptors in the zebrafish	Developmental biology	1995	169	745-758	
ZDB-PUB-961014-760	3770305	Mendelson, B. and Kimmel, C.B.	Identified vertebrate neurons that differ in axonal projection develop together	Developmental biology	1986	118	309-313	
ZDB-PUB-961014-931	7541377	Reinhard, E., Yokoe, H., Niebling, K.R., Allbritton, N.L., Kuhn, M.A., and Meyer, T.	Localized calcium signals in early zebrafish development	Developmental biology	1995	170	50-61	
ZDB-PUB-970102-12	8660876	Boppart, S.A., Brezinski, M.E., Bouma, B.E., Tearney, G.J., and Fujimoto, J.G.	Investigation of developing embryonic morphology using optical coherence tomography	Developmental biology	1996	177(1)	54-63	
ZDB-PUB-970121-6	8954734	Easter, S.S., Jr. and Nicola, G.N.	The development of vision in the zebrafish (Danio rerio)	Developmental biology	1996	180	646-663	
ZDB-PUB-970311-5	9070331	Willett, C.E., Zapata, A.G., Hopkins, N.A., and Steiner, L.A.	Expression of zebrafish rag genes during early development identifies the thymus	Developmental biology	1997	182(2)	331-341	
ZDB-PUB-970812-2	9242414	Halpern, M.E., Hatta, K., Amacher, S.L., Talbot, W.S., Yan, Y.-L., Thisse, B., Thisse, C., Postlethwait, J.H., and Kimmel, C.B.	Genetic interactions in zebrafish midline development	Developmental biology	1997	187(2)	154-170	
ZDB-PUB-971013-2	9331337	Kondo, T., Yanagawa, T., Yoshida, N., and Yamashita, M.	Introduction of cyclin B induces activation of the maturation-promoting factor and breakdown of germinal vesicle in growing zebrafish oocytes unresponsive to the maturation-inducing hormone	Developmental biology	1997	190(1)	142-152	
ZDB-PUB-971111-4	9405098	Webb, S.E., K.W. Lee, E. Karplus, and A.L. Miller	Localized calcium transients accompany furrow positioning, propagation, and deepening during the early cleavage period of zebrafish embryos	Developmental biology	1997	192	78-92	
ZDB-PUB-971216-3	9398434	Riley, B.B., Zhu, C., Janetopoulos, C., and Aufderheide, K.J.	A critical period of ear development controlled by distinct populations of ciliated cells in the zebrafish	Developmental biology	1997	191(2)	191-201	
ZDB-PUB-980205-18	9441677	Glasgow, E., Karavanov, A.A., and Dawid, I.B.	Neuronal and neuroendocrine expression of lim3, a LIM class homeobox gene, is altered in mutant zebrafish with axial signaling defects	Developmental biology	1997	192	405-419	
ZDB-PUB-980415-12	9520329	Martin, S.C., Sandell, J.H., and Heinrich, G.	Zebrafish TrkC1 and TrkC2 receptors define two different cell populations in the nervous system during the period of axonogenesis	Developmental biology	1998	195	114-130	
ZDB-PUB-980629-4	9630752	Woo, K. and Fraser, S.E.	Specification of the hindbrain fate in the zebrafish	Developmental biology	1998	197	283-296	
ZDB-PUB-981006-4	9740658	Blader, P. and Strähle, U.	Ethanol impairs migration of the prechordal plate in the zebrafish embryo	Developmental biology	1998	201	185-201	
ZDB-PUB-981208-27	9808777	Kimmel, C.B., Miller, C.T., Kruse, G., Ullmann, B., BreMiller, R.A., Larison, K.D., and Snyder, H.C.	The shaping of the pharnygeal cartilages during early development of the zebrafish	Developmental biology	1998	203	245-263	
ZDB-PUB-990106-20	9851851	McKendry, R., Harland, R.M., and Stachel, S.E.	Activin-induced factors maintain goosecoid transcription through a paired homeodomain binding site	Developmental biology	1998	204	172-186	
ZDB-PUB-990119-19	9882476	Erter, C.E., Solnica-Krezel, L., and Wright, C.V.E.	Zebrafish nodal-related 2 encodes an early mesendodermal inducer signaling from the extraembryonic yolk syncytial layer	Developmental biology	1998	204	361-372	
ZDB-PUB-990315-8	10075838	Lewis, K.E., Concordet, J.P., and Ingham, P.W.	Characterisation of a second patched gene in the zebrafish Danio rerio and the differential response of patched genes to hedgehog signalling	Developmental biology	1999	208	14-29	
ZDB-PUB-990607-11	10357894	Cretekos, C.J. and Grunwald, D.J.	alyron, an insertional mutation affecting early neural crest development in zebrafish	Developmental biology	1999	210(2)	322-338	
ZDB-PUB-990628-20	10364423	Metscher, B.D. and Ahlberg, P.E.	Zebrafish in context: uses of a laboratory model in comparative studies	Developmental biology	1999	210(1)	1-14	
ZDB-PUB-990920-3	10491266	Lee, K.W., Webb, S.E., and Miller, A.L.	A wave of free cytosolic calcium traverses zebrafish eggs on activation	Developmental biology	1999	214(1)	168-180	
ZDB-PUB-991102-11	10545242	Alexander, J., Rothenberg, M., Henry, G.L., and Stainier, D.Y.R.	casanova plays an early and essential role in endoderm formation in zebrafish	Developmental biology	1999	215(2)	343-357	
ZDB-PUB-991216-1	10642786	Lewis, K.E., Currie, P.D., Roy, S., Schauerte, H., Haffter, P., and Ingham, P.W.	Control of muscle cell-type specification in the zebrafish embryo by hedgehog signalling	Developmental biology	1999	216(2)	469-480	
ZDB-PUB-091101-3	19850032	Frankenberg, S., Pask, A., and Renfree, M.B.	The evolution of class V POU domain transcription factors in vertebrates and their characterisation in a marsupial	Developmental biology	2010	337(1)	162-170	
ZDB-PUB-091101-9	19852954	Glazer, A., Wilkinson, A., Backer, C.B., Lapan, S., Gutzman, J.H., Cheeseman, I.M., and Reddien, P.W.	The Zn Finger protein Iguana impacts Hedgehog signaling by promoting ciliogenesis	Developmental biology	2010	337(1)	148-156	
ZDB-PUB-091221-5	20005219	Brown, K.E., Keller, P.J., Ramialison, M., Rembold, M., Stelzer, E.H., Loosli, F., and Wittbrodt, J.	Nlcam modulates midline convergence during anterior neural plate morphogenesis	Developmental biology	2010	339(1)	14-25	
ZDB-PUB-100211-2	20122912	Binot, A.C., Manfroid, I., Flasse, L., Winandy, M., Motte, P., Martial, J.A., Peers, B., and Voz, M.L.	Nkx6.1 and nkx6.2 regulate alpha- and beta-cell formation in zebrafish by acting on pancreatic endocrine progenitor cells	Developmental biology	2010	\ 	\ 	
ZDB-PUB-100302-4	20178782	Nguyen, C.T., Langenbacher, A., Hsieh, M., and Chen, J.N.	The Paf1 complex component Leo1 is essential for cardiac and neural crest development in zebrafish	Developmental biology	2010	\ 	\ 	
ZDB-PUB-100302-20	20188722	van Eekelen, M., Runtuwene, V., Overvoorde, J., and den Hertog, J.	RPTPalpha and PTPepsilon Signaling via Fyn/Yes and RhoA is Essential for Zebrafish Convergence and Extension Cell Movements during Gastrulation	Developmental biology	2010	\ 	\ 	
ZDB-PUB-000505-23	10753513	Stenkamp, D.L., Frey, R.A., Prabhudesai, S.N., and Raymond, P.A.	Function for hedgehog genes in zebrafish retinal development	Developmental biology	2000	220(2)	238-252	
ZDB-PUB-000824-1	10885753	Majumdar, A. and Drummond, I.A.	The zebrafish floating head mutant demonstrates podocytes play an important role in directing glomerular differentiation	Developmental biology	2000	222(1)	147-157	
ZDB-PUB-000824-12	10898958	Oates, A.C., Bruce, A.E., and Ho, R.K.	Too much interference: injection of double-stranded RNA has nonspecific effects in the zebrafish embryo	Developmental biology	2000	224(1)	20-28	
ZDB-PUB-010130-1	11133156	Perz-Edwards, A., Hardison, N.L., and Linney, E.	Retinoic acid-mediated gene expression in transgenic reporter zebrafish	Developmental biology	2001	229(1)	89-101	
ZDB-PUB-010131-31	11150242	Kondo, T., Kotani, T., and Yamashita, M.	Dispersion of cyclin B mRNA aggregation is coupled with translational activation of the mRNA during zebrafish oocyte maturation	Developmental biology	2001	229(2)	421-431	
ZDB-PUB-010205-2	11180963	Schilling, T.F., Prince, V., and Ingham, P.W.	Plasticity in zebrafish hox expression in the hindbrain and cranial neural crest	Developmental biology	2001	229	201-216	
ZDB-PUB-010205-5	11161578	Isogai, S., Horiguchi, M., and Weinstein, B.M.	The vascular anatomy of the developing zebrafish: an atlas of embryonic and early larval development	Developmental biology	2001	230(2)	278-301	
ZDB-PUB-010219-1	11237470	Shepherd, I.T., Beattie, C.E., and Raible, D.W.	Functional analysis of zebrafish GDNF	Developmental biology	2001	231(2)	420-435	
ZDB-PUB-010220-11	11203695	Hjorth, J.T. and Key, B.	Are pioneer axons guided by regulatory gene expression domains in the zebrafish forebrain? High-resolution analysis of the patterning of the zebrafish brain during axon tract formation	Developmental biology	2001	229(2)	271-286	
ZDB-PUB-010220-4	11161558	Yeo, S.Y., Little, M.H., Yamada, T., Miyashita, T., Halloran, M.C., Kuwada, J.Y., Huh, T.L., and Okamoto, H.	Overexpression of a slit homologue impairs convergent extension of the mesoderm and causes cyclopia in embryonic zebrafish	Developmental biology	2001	230(1)	1-17	
ZDB-PUB-010423-1	11336493	Kimmel, C.B., Miller, C.T., and Moens, C.B.	Specification and morphogenesis of the zebrafish larval head skeleton	Developmental biology	2001	233(2)	239-257	
ZDB-PUB-010507-1	11397013	Pujic, Z. and Malicki, J.	Mutation of the zebrafish glass onion locus causes early cell-nonautonomous loss of neuroepithelial integrity followed by severe neuronal patterning defects in the retina	Developmental biology	2001	234(2)	454-469	
ZDB-PUB-010716-1	11476583	Link, B.A., Kainz, P.M., Ryou, T., and Dowling, J.E.	The perplexed and confused mutations affect distinct stages during the transition from proliferating to post-mitotic cells within the zebrafish retina	Developmental biology	2001	236(2)	436-453	
ZDB-PUB-010813-3	11543618	Lister, J., Close, J., and Raible, D.	Duplicate mitf genes in zebrafish: complementary expression and conservation of melanogenic potential	Developmental biology	2001	237(2)	333-344	
ZDB-PUB-011119-1	11784083	Zhang, J., Malayaman, S., Davis, C., and Granato, M.	A dual role for the zebrafish unplugged gene in motor axon pathfinding and pharyngeal development	Developmental biology	2001	240(2)	560-573	
ZDB-PUB-011203-1	11784095	Willot, V., Mathieu, J., Lu, Y., Schmid, B., Sidi, S., Yan, Y.-L., Postlethwait, J.H., Mullins, M., Rosa, F., and Peyriéras, N.	Cooperative action of ADMP- and BMP-mediated pathways in regulating cell fates in the zebrafish gastrula	Developmental biology	2001	241(1)	59-78	
ZDB-PUB-020114-1	11820812	Bingham, S., Higashijima, S.-I., Okamoto, H., and Chandrasekhar, A.	The zebrafish trilobite gene is essential for tangential migration of branchiomotor neurons	Developmental biology	2002	242(2)	149-160	
ZDB-PUB-020115-3	11784111	Aoki, T.O., Mathieu, J., Saint-Etienne, L., Rebagliati, M.R., Peyriéras, N., and Rosa, F.M.	Regulation of nodal signalling and mesendoderm formation by TARAM-A, a TGFbeta-related type I receptor	Developmental biology	2002	241(2)	273-288	
ZDB-PUB-020402-4	11900460	diIorio, P.J., Moss, J.B., Sbrogna, J.L., Karlstrom, R.O., and Moss, L.G.	Sonic hedgehog is required early in pancreatic islet development.	Developmental biology	2002	244(1)	75-84	
ZDB-PUB-020610-3	12051816	Lieschke, G.J., Oates, A.C., Paw, B.H., Thompson, M.A., Hall, N.E., Ward, A.C., Ho, R.K., Zon, L.I., and Layton, J.E.	Zebrafish SPI-1 (PU.1) marks a site of myeloid development independent of primitive erythropoiesis: implications for axial patterning	Developmental biology	2002	246(2)	274-295	
ZDB-PUB-020703-2	12086473	Hunter, M.P. and Prince, V.E.	Zebrafish Hox paralogue group 2 genes function redundantly as selector genes to pattern the second pharyngeal arch	Developmental biology	2002	247(2)	367-389	
ZDB-PUB-020807-10	12142024	Kawahara, A., Chien, C.-B., and Dawid, I.B.	The homeobox gene mbx is involved in eye and tectum development	Developmental biology	2002	248(1)	107-117	
ZDB-PUB-021106-12	12413897	Andermann, P., Ungos, J., and Raible, D.W.	Neurogenin1 defines zebrafish cranial sensory Ganglia precursors	Developmental biology	2002	251(1)	45-58	
ZDB-PUB-030117-10	12453456	Rastegar, S., Albert, S., Le Roux, I., Fischer, N., Blader, P., Müller, F., and Strähle, U.	A floor plate enhancer of the zebrafish netrin1 gene requires Cyclops (Nodal) signalling and the winged helix transcription factor FoxA2	Developmental biology	2002	252(1)	1-14	
ZDB-PUB-030304-12	12591239	Lekven, A.C., Buckles, G.R., Kostakis, N., and Moon, R.T.	Wnt1 and wnt10b function redundantly at the zebrafish midbrain-hindbrain boundary	Developmental biology	2003	254(2)	172-187	
ZDB-PUB-030304-4	12606279	Sbrogna, J.L., Barresi, M.J., and Karlstrom, R.O.	Multiple roles for Hedgehog signaling in zebrafish pituitary development	Developmental biology	2003	254(1)	19-35	
ZDB-PUB-030325-2	12645925	Cooper, K.L., Leisenring, W.M., and Moens, C.B.	Autonomous and nonautonomous functions for Hox/Pbx in branchiomotor neuron development	Developmental biology	2003	253(2)	200-213	
ZDB-PUB-030408-2	12679100	Parichy, D.M. and Turner, J.M.	Zebrafish puma mutant decouples pigment pattern and somatic metamorphosis	Developmental biology	2003	256(2)	242-257	
ZDB-PUB-030514-3	12710963	Whitlock, K.E., Wolf, C.D., and Boyce, M.L.	Gonadotropin-releasing hormone (gnrh) cells arise from cranial neural crest and adenohypophyseal regions of the neural plate in the zebrafish, Danio rerio	Developmental biology	2003	257(1)	140-152	
ZDB-PUB-030716-21	12798289	Nechiporuk, A., Poss, K.D., Johnson, S.L., and Keating, M.T.	Positional cloning of a temperature-sensitive mutant emmental reveals a role for sly1 during cell proliferation in zebrafish fin regeneration	Developmental biology	2003	258(2)	291-306	
ZDB-PUB-030728-7	12871703	Goldsmith, M.I., Fisher, S., Waterman, R., and Johnson, S.L.	Saltatory control of isometric growth in the zebrafish caudal fin is disrupted in long fin and rapunzel mutants	Developmental biology	2003	259(2)	303-317	
ZDB-PUB-030902-16	12941629	Field, H.A., Dong, P.D., Beis, D., and Stainier, D.Y.	Formation of the digestive system in zebrafish. II. Pancreas morphogenesis.	Developmental biology	2003	261(1)	197-208	
ZDB-PUB-031111-13	14597195	Davidson, A.E., Balciunas, D., Mohn, D., Shaffer, J., Hermanson, S., Sivasubbu, S., Cliff, M.P., Hackett, P.B., and Ekker, S.C.	Efficient gene delivery and gene expression in zebrafish using the Sleeping Beauty transposon	Developmental biology	2003	263(2)	191-202	
ZDB-PUB-031119-3	14623247	Huang, C., Lawson, N.D., Weinstein, B.M., and Johnson, S.L.	reg6 is required for branching morphogenesis during blood vessel regeneration in zebrafish caudal fins	Developmental biology	2003	264(1)	263-274	
ZDB-PUB-040109-26	14697367	O'Brien, E.K., d'Alencon, C., Bonde, G., Li, W., Schoenebeck, J., Allende, M.L., Gelb, B.D., Yelon, D., Eisen, J.S., and Cornell, R.A.	Transcription factor Ap-2alpha is necessary for development of embryonic melanophores, autonomic neurons and pharyngeal skeleton in zebrafish	Developmental biology	2004	265(1)	246-261	
ZDB-PUB-040322-5	15031112	Hashimoto, Y., Maegawa, S., Nagai, T., Yamaha, E., Suzuki, H., Yasuda, K., and Inoue, K.	Localized maternal factors are required for zebrafish germ cell formation	Developmental biology	2004	268(1)	152-161	
ZDB-PUB-040325-1	15081374	Wei, X., Cheng, Y., Luo, Y., Shi, X.,  Nelson, S., and Hyde, D.R. 	The zebrafish Par-3 homolog is required for separation of the eye fields and retinal lamination, but not neuronal specification	Developmental biology	2004	269(1)	286-301	
ZDB-PUB-040415-4	15081370	Shen, Y.C., and Raymond, P.A.	Zebrafish cone-rod (crx) homeobox gene promotes retinogenesis	Developmental biology	2004	269(1)	237-251	
ZDB-PUB-040429-3	15110707	Nakano, Y., Kim, H.R., Kawakami, A., Roy, S., Schier, A.F., and Ingham, P.W.	Inactivation of dispatched 1 by the chameleon mutation disrupts Hedgehog signalling in the zebrafish embryo	Developmental biology	2004	269(2)	381-392	
ZDB-PUB-040609-2	15183727	Lin, J.W., Biankin, A.V., Horb, M.E., Ghosh, B., Prasad, N.B., Yee, N.S., Pack, M.A., and Leach, S.D.	Differential requirement for ptf1a in endocrine and exocrine lineages of developing zebrafish pancreas	Developmental biology	2004	270(2)	474-486	
ZDB-PUB-040617-4	15196955	Begemann, G., Marx, M., Mebus, K., Meyer, A., and Bastmeyer, M.	Beyond the neckless phenotype: influence of reduced retinoic acid signaling on motor neuron development in the zebrafish hindbrain	Developmental biology	2004	271(1)	119-129	
ZDB-PUB-040630-2	15223348	Nakada, Y., Parab, P., Simmons, A., Omer-Abdalla, A., and Johnson, J.E.	Separable enhancer sequences regulate the expression of the neural bHLH transcription factor neurogenin 1	Developmental biology	2004	271(2)	479-487	
ZDB-PUB-040713-3	15242793	Glavic, A., Maris Honoré, S., Gloria Feijóo, C., Bastidas, F., Allende, M.L., and Mayor, R.	Role of BMP signaling and the homeoprotein iroquois in the specification of the cranial placodal field	Developmental biology	2004	272(1)	89-103	
ZDB-PUB-040811-4	15302595	Zhang, C., Basta, T., Hernandez-Lagunas, L., Simpson, P., Stemple, D.L., Artinger, K.B., and Klymkowsky, M.W.	Repression of nodal expression by maternal B1-type SOXs regulates germ layer formation in Xenopus and zebrafish	Developmental biology	2004	273(1)	23-37	
ZDB-PUB-040813-6	14512021	Vasiliauskas, D., Laufer, E., and Stern, C.D.	A role for hairy1 in regulating chick limb bud growth	Developmental biology	2003	262(1)	94-106	
ZDB-PUB-041008-3	15464578	Hirsinger, E., Stellabotte, F., Devoto, S.H., and Westerfield, M.	Hedgehog signaling is required for commitment but not initial induction of slow muscle precursors	Developmental biology	2004	275(1)	143-157	
ZDB-PUB-041202-4	15572137	Kozlowski, D.J., Whitfield, T.T., Hukriede, N.A., Lam, W.K., and Weinberg, E.S.	The zebrafish dog-eared mutation disrupts eya1, a gene required for cell survival and differentiation in the inner ear and lateral line	Developmental biology	2005	277(1)	27-41	
ZDB-PUB-041208-10	15581883	Kaji, T., and Artinger, K.B.	dlx3b and dlx4b function in the development of Rohon-Beard sensory neurons and trigeminal placode in the zebrafish neurula	Developmental biology	2004	276(2)	523-540	
ZDB-PUB-041208-8	15581877	Gleason, M.R., Armisen, R., Verdecia, M.A., Sirotkin, H., Brehm, P., and Mandel, G.	A mutation in serca underlies motility dysfunction in accordion zebrafish	Developmental biology	2004	276(2)	441-451	
ZDB-PUB-041228-21	15617691	Dooley, K.A., Davidson, A.J., and Zon, L.I.	Zebrafish scl functions independently in hematopoietic and endothelial development	Developmental biology	2005	277(2)	522-536	
ZDB-PUB-050119-8	15649456	Rentzsch, F., Hobmayer, B., and Holstein, T.W.	Glycogen synthase kinase 3 has a proapoptotic function in Hydra gametogenesis	Developmental biology	2005	278(1)	1-12	
ZDB-PUB-050202-2	15680358	Bernardos, R.L., Lentz, S.I., Wolfe, M.S., and Raymond, P.A.	Notch-Delta signaling is required for spatial patterning and Muller glia differentiation in the zebrafish retina	Developmental biology	2005	278(2)	381-395	
ZDB-PUB-050215-6	15708557	Yimlamai, D., Konnikova, L., Moss, L.G., and Jay, D.G.	The zebrafish down syndrome cell adhesion molecule is involved in cell movement during embryogenesis	Developmental biology	2005	279(1)	44-57	
ZDB-PUB-050318-13	15766756	Birely, J., Schneider, V.A., Santana, E., Dosch, R., Wagner, D.S., Mullins, M.C., and Granato, M.	Genetic screens for genes controlling motor nerve-muscle development and interactions	Developmental biology	2005	280(1)	162-176	
ZDB-PUB-050427-6	15848392	Bardet, P.L., Horard, B., Laudet, V., and Vanacker, J.M.	The ERRalpha orphan nuclear receptor controls morphogenetic movements during zebrafish gastrulation	Developmental biology	2005	281(1)	102-111	
ZDB-PUB-050518-1	15890328	Sumanas, S., Zhang, B., Dai, R., and Lin, S.	15-Zinc finger protein Bloody Fingers is required for zebrafish morphogenetic movements during neurulation	Developmental biology	2005	283(1)	85-96	
ZDB-PUB-050518-3	15890331	Yergeau, D.A., Cornell, C.N., Parker, S.K., Zhou, Y., and Detrich, H.W. 3rd.	bloodthirsty, an RBCC/TRIM gene required for erythropoiesis in zebrafish	Developmental biology	2005	283(1)	97-112	
ZDB-PUB-050607-10	15932753	Clements, W.K., and Kimelman, D.	LZIC regulates neuronal survival during zebrafish development	Developmental biology	2005	283(2)	322-334	
ZDB-PUB-050607-9	15932752	Albertson, R.C., and Yelick, P.C.	Roles for fgf8 signaling in left-right patterning of the visceral organs and craniofacial skeleton	Developmental biology	2005	283(2)	310-321	
ZDB-PUB-050621-1	15950614	Reece-Hoyes, J.S., Keenan, I.D., Pownall, M.E., and Isaacs, H.V.	A consensus Oct1 binding site is required for the activity of the Xenopus Cdx4 promoter	Developmental biology	2005	282(2)	509-523	
ZDB-PUB-050623-3	15963491	Yee, N.S., Lorent, K., and Pack, M.	Exocrine pancreas development in zebrafish	Developmental biology	2005	284(1)	84-101	
ZDB-PUB-050714-10	16009360	Chen, E., Stringer, S.E., Rusch, M.A., Selleck, S.B., and Ekker, S.C.	A unique role for 6-O sulfation modification in zebrafish vascular development	Developmental biology	2005	284(2)	364-376	
ZDB-PUB-050803-9	16055112	Mavropoulos, A., Devos, N., Biemar, F., Zecchin, E., Argenton, F., Edlund, H., Motte, P., Martial, J.A., and Peers, B.	sox4b is a key player of pancreatic alpha cell differentiation in zebrafish	Developmental biology	2005	285(1)	211-223	
ZDB-PUB-050818-15	16102743	Maves, L., and Kimmel, C.B.	Dynamic and sequential patterning of the zebrafish posterior hindbrain by retinoic acid	Developmental biology	2005	285(2)	593-605	
ZDB-PUB-050825-7	16112664	Crawford, B.D., and Pilgrim, D.B.	Ontogeny and regulation of matrix metalloproteinase activity in the zebrafish embryo by in vitro and in vivo zymography	Developmental biology	2005	286(2)	405-414	
ZDB-PUB-050831-7	16125164	Ng, A.N., de Jong-Curtain, T.A., Mawdsley, D.J., White, S.J., Shin, J., Appel, B., Dong, P.D., Stainier, D.Y., and Heath, J.K.	Formation of the digestive system in zebrafish: III. Intestinal epithelium morphogenesis	Developmental biology	2005	286(1)	114-135	
ZDB-PUB-050929-1	15013808	Heicklen-Klein, A., and Evans, T.	T-box binding sites are required for activity of a cardiac GATA-4 enhancer	Developmental biology	2004	267(2)	490-504	
ZDB-PUB-051012-22	16216237	Machado, R.J., Moore, W., Hames, R., Houliston, E., Chang, P., King, M.L., and Woodland, H.R.	Xenopus Xpat protein is a major component of germ plasm and may function in its organisation and positioning	Developmental biology	2005	287(2)	289-300	
ZDB-PUB-051101-2	16236276	Dill, K.K., and Amacher, S.L.	tortuga refines Notch pathway gene expression in the zebrafish presomitic mesoderm at the post-transcriptional level	Developmental biology	2005	287(2)	225-236	
ZDB-PUB-051128-5	16300752	Rojas-Munoz, A., Dahm, R., and Nusslein-Volhard, C.	chokh/rx3 specifies the retinal pigment epithelium fate independently of eye morphogenesis	Developmental biology	2005	288(2)	348-362	
ZDB-PUB-051207-11	16316643	Walton, R.Z., Bruce, A.E., Olivey, H.E., Najib, K., Johnson, V., Earley, J.U., Ho, R.K., and Svensson, E.C.	Fog1 is required for cardiac looping in zebrafish	Developmental biology	2006	289(2)	482-493	
ZDB-PUB-051221-5	16364286	Seiliez, I., Thisse, B., and Thisse, C.	FoxA3 and goosecoid promote anterior neural fate through inhibition of Wnt8a activity before the onset of gastrulation	Developmental biology	2006	290(1)	152-163	
ZDB-PUB-060210-12	16458879	Nica, G., Herzog, W., Sonntag, C., Nowak, M., Schwarz, H., Zapata, A.G., Hammerschmidt, M.	Eya1 is required for lineage-specific differentiation, but not for cell survival in the zebrafish adenohypophysis	Developmental biology	2006	292(1)	189-204	
ZDB-PUB-060210-3	16457796	Theusch, E.V., Brown, K.J., and Pelegri, F.	Separate pathways of RNA recruitment lead to the compartmentalization of the zebrafish germ plasm	Developmental biology	2006	292(1)	129-141	
ZDB-PUB-060306-8	16497290	Dorey, K., and Hill, C.S.	A novel Cripto-related protein reveals an essential role for EGF-CFCs in Nodal signalling in Xenopus embryos	Developmental biology	2006	292(2)	303-316	
ZDB-PUB-060313-14	16513105	Ramasamy, S., Wang, H., Quach, H.N., and Sampath, K.	Zebrafish Staufen1 and Staufen2 are required for the survival and migration of primordial germ cells	Developmental biology	2006	292(2)	393-406	
ZDB-PUB-060323-25	16545363	Sieger, D., Ackermann, B., Winkler, C., Tautz, D., and Gajewski, M.	her1 and her13.2 are jointly required for somitic border specification along the entire axis of the fish embryo	Developmental biology	2006	293(1)	242-251	
ZDB-PUB-060323-6	16530746	Connors, S.A., Tucker, J.A., and Mullins, M.C.	Temporal and spatial action of Tolloid (Mini fin) and Chordin to pattern tail tissues	Developmental biology	2006	293(1)	191-202	
ZDB-PUB-060403-11	16574097	Van Campenhout, C., Nichane, M., Antoniou, A., Pendeville, H., Bronchain, O.J., Marine, J.C., Mazabraud, A., Voz, M.L., and Bellefroid, E.J.	Evi1 is specifically expressed in the distal tubule and duct of the Xenopus pronephros and plays a role in its formation	Developmental biology	2006	294(1)	203-219	
ZDB-PUB-060501-4	16631158	Cheng, W., Guo, L., Zhang, Z., Soo, H.M., Wen, C., Wu, W., and Peng, J.	HNF factors form a network to regulate liver-enriched genes in zebrafish	Developmental biology	2006	294(2)	482-496	
ZDB-PUB-060517-16	16684517	Ho, D.M., Chan, J., Bayliss, P., and Whitman, M.	Inhibitor-resistant type I receptors reveal specific requirements for TGF-beta signaling in vivo	Developmental biology	2006	295(2)	730-742	
ZDB-PUB-060517-6	16678149	Walker, M.B., Miller, C.T., Talbot, J.C., Stock, D.W., and Kimmel, C.B.	Zebrafish furin mutants reveal intricacies in regulating Endothelin1 signaling in craniofacial patterning	Developmental biology	2006	295(1)	194-205	
ZDB-PUB-060531-8	16712834	Rau, M.J., Fischer, S., and Neumann, C.J.	Zebrafish Trap230/Med12 is required as a coactivator for Sox9-dependent neural crest, cartilage and ear development	Developmental biology	2006	296(1)	83-93	
ZDB-PUB-060616-49	16765934	Ochi, H., Pearson, B.J., Chuang, P.T., Hammerschmidt, M., and Westerfield, M.	Hhip regulates zebrafish muscle development by both sequestering Hedgehog and modulating localization of Smoothened	Developmental biology	2006	297(1)	127-140	
ZDB-PUB-060623-19	16784739	Gulati-Leekha, A., and Goldman, D.	A reporter-assisted mutagenesis screen using alpha1-tubulin-GFP transgenic zebrafish uncovers missteps during neuronal development and axonogenesis	Developmental biology	2006	296(1)	29-47	
ZDB-PUB-060623-7	16781702	Bates, J.M., Mittge, E., Kuhlman, J., Baden, K.N., Cheesman, S.E., and Guillemin, K.	Distinct signals from the microbiota promote different aspects of zebrafish gut differentiation	Developmental biology	2006	297(2)	374-386	
ZDB-PUB-060807-1	16875686	Pogoda, H.M., Sternheim, N., Lyons, D.A., Diamond, B., Hawkins, T.A., Woods, I.G., Bhatt, D.H., Franzini-Armstrong, C., Dominguez, C., Arana, N., Jacobs, J., Nix, R., Fetcho, J.R., and Talbot, W.S.	A genetic screen identifies genes essential for development of myelinated axons in zebrafish	Developmental biology	2006	298(1)	118-131	
ZDB-PUB-060911-7	16959242	Smith, A., Avaron, F., Guay, D., Padhi, B.K., and Akimenko, M.A.	Inhibition of BMP signaling during zebrafish fin regeneration disrupts fin growth and scleroblast differentiation and function	Developmental biology	2006	299(2)	438-454	
ZDB-PUB-061020-28	17026981	Mizoguchi, T., Izawa, T., Kuroiwa, A., and Kikuchi, Y.	Fgf signaling negatively regulates Nodal-dependent endoderm induction in zebrafish	Developmental biology	2006	300(2)	612-622	
ZDB-PUB-061020-53	17046741	Feng, X., Adiarte, E.G., and Devoto, S.H.	Hedgehog acts directly on the zebrafish dermomyotome to promote myogenic differentiation	Developmental biology	2006	300(2)	736-746	
ZDB-PUB-061116-11	17098223	Echeverri, K., and Oates, A.C.	Coordination of symmetric cyclic gene expression during somitogenesis by Suppressor of Hairless involves regulation of retinoic acid catabolism	Developmental biology	2007	301(2)	388-403	
ZDB-PUB-061116-7	17094960	Hammond, C.L., Hinits, Y., Osborn, D.P., Minchin, J.E., Tettamanti, G., and Hughes, S.M.	Signals and myogenic regulatory factors restrict pax3 and pax7 expression to dermomyotome-like tissue in zebrafish	Developmental biology	2007	302(2)	504-521	
ZDB-PUB-070122-35	17217944	Song, J., Kim, H.J., Gong, Z., Liu, N.A., and Lin, S.	Vhnf1 acts downstream of Bmp, Fgf, and RA signals to regulate endocrine beta cell development in zebrafish	Developmental biology	2007	303(2)	561-575	
ZDB-PUB-070122-9	17196583	Wakahara, T., Kusu, N., Yamauchi, H., Kimura, I., Konishi, M., Miyake, A., and Itoh, N.	fibin, a novel secreted lateral plate mesoderm signal, is essential for pectoral fin bud initiation in zebrafish	Developmental biology	2007	303(2)	527-535	
ZDB-PUB-070210-1	17222402	Makky, K., Tekiela, J., and Mayer, A.N.	Target of rapamycin (TOR) signaling controls epithelial morphogenesis in the vertebrate intestine	Developmental biology	2007	303(2)	501-513	
ZDB-PUB-070210-25	17239849	Yin, C., and Solnica-Krezel, L.	Convergence and extension movements mediate the specification and fate maintenance of zebrafish slow muscle precursors	Developmental biology	2007	304(1)	141-155	
ZDB-PUB-070210-44	17258188	Li, W., and Cornell, R.A.	Redundant activities of Tfap2a and Tfap2c are required for neural crest induction and development of other non-neural ectoderm derivatives in zebrafish embryos	Developmental biology	2007	304(1)	338-354	
ZDB-PUB-070303-20	17306247	Bennett, J.T., Joubin, K., Cheng, S., Aanstad, P., Herwig, R., Clark, M., Lehrach, H., and Schier, A.F.	Nodal signaling activates differentiation genes during zebrafish gastrulation	Developmental biology	2007	304(2)	525-540	
ZDB-PUB-070303-34	17325454	Seki, S., Kouya, T., Hara, T., M Valdez, D., Jin, B., Kasai, M., and Edashige, K.	Exogenous Expression of Rat Aquaporin-3 Enhances Permeability to Water and Cryoprotectants of Immature Oocytes in the Zebrafish (Danio rerio)	Developmental biology	2007	53(3)	597-604	
ZDB-PUB-070310-4	17335798	Davison, J.M., Akitake, C.M., Goll, M.G., Rhee, J.M., Gosse, N., Baier, H., Halpern, M.E., Leach, S.D., and Parsons, M.J.	Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish	Developmental biology	2007	304(2)	811-824	
ZDB-PUB-070413-7	17418113	Draper, B.W., McCallum, C.M., and Moens, C.B.	nanos1 is required to maintain oocyte production in adult zebrafish	Developmental biology	2007	305(2)	589-598	
ZDB-PUB-070427-6	17188260	Bajoghli, B., Aghaallaei, N., Soroldoni, D., and Czerny, T.	The roles of Groucho/Tle in left-right asymmetry and Kupffer's vesicle organogenesis	Developmental biology	2007	303(1)	347-361	
ZDB-PUB-070504-11	17448458	Albertson, R.C., and Yelick, P.C.	Fgf8 haploinsufficiency results in distinct craniofacial defects in adult zebrafish	Developmental biology	2007	306(2)	505-515	
ZDB-PUB-070614-18	17531969	Dworkin, S., Heath, J.K., Dejong-Curtain, T.A., Hogan, B.M., Lieschke, G.J., Malaterre, J., Ramsay, R.G., and Mantamadiotis, T.	CREB activity modulates neural cell proliferation, midbrain-hindbrain organization and patterning in zebrafish	Developmental biology	2007	307(1)	127-141	
ZDB-PUB-070625-18	17555741	Jänicke, M., Carney, T.J., and Hammerschmidt, M.	Foxi3 transcription factors and Notch signaling control the formation of skin ionocytes from epidermal precursors of the zebrafish embryo	Developmental biology	2007	307(2)	258-271	
ZDB-PUB-070625-20	17559829	Zhang, X.Y., and Rodaway, A.R.	SCL-GFP transgenic zebrafish: In vivo imaging of blood and endothelial development and identification of the initial site of definitive hematopoiesis	Developmental biology	2007	307(2)	179-194	
ZDB-PUB-070625-5	17543297	Gansner, J.M., Mendelsohn, B.A., Hultman, K.A., Johnson, S.L., and Gitlin, J.D.	Essential role of lysyl oxidases in notochord development	Developmental biology	2007	307(2)	202-213	
ZDB-PUB-070629-6	17570355	Kok, F.O., Oster, E., Mentzer, L., Hsieh, J.C., Henry, C.A., and Sirotkin, H.I.	The role of the SPT6 chromatin remodeling factor in zebrafish embryogenesis	Developmental biology	2007	307(2)	214-226	
ZDB-PUB-070806-12	17651719	Perner, B., Englert, C., and Bollig, F.	The Wilms tumor genes wt1a and wt1b control different steps during formation of the zebrafish pronephros	Developmental biology	2007	309(1)	87-96	
ZDB-PUB-070813-31	17689523	Van Raay, T.J., Coffey, R.J., and Solnica-Krezel, L.	Zebrafish Naked1 and Naked2 antagonize both canonical and non-canonical Wnt signaling	Developmental biology	2007	309(2)	151-168	
ZDB-PUB-070820-1	17692308	Hagos, E.G., Fan, X., and Dougan, S.T.	The role of maternal Activin-like signals in zebrafish embryos	Developmental biology	2007	309(2)	245-258	
ZDB-PUB-070907-3	17719025	Pei, W., Noushmehr, H., Costa, J., Ouspenskaia, M.V., Elkahloun, A.G., and Feldman, B.	An early requirement for maternal FoxH1 during zebrafish gastrulation	Developmental biology	2007	310(1)	10-22	
ZDB-PUB-070920-8	17850782	Fan, X., Hagos, E.G., Xu, B., Sias, C., Kawakami, K., Burdine, R.D., and Dougan, S.T.	Nodal signals mediate interactions between the extra-embryonic and embryonic tissues in zebrafish	Developmental biology	2007	310(2)	363-378	
ZDB-PUB-071009-13	17919534	Webb, A.E., Sanderford, J., Frank, D., Talbot, W.S., Driever, W., and Kimelman, D.	Laminin alpha5 is essential for the formation of the zebrafish fins	Developmental biology	2007	311(2)	369-382	
ZDB-PUB-071029-1	17949705	Veldman, M.B., Bemben, M.A., Thompson, R.C., and Goldman, D.	Gene expression analysis of zebrafish retinal ganglion cells during optic nerve regeneration identifies KLF6a and KLF7a as important regulators of axon regeneration	Developmental biology	2007	312(2)	596-612	
ZDB-PUB-071029-7	17950723	Yabe, T., Ge, X., and Pelegri, F.	The zebrafish maternal-effect gene cellular atoll encodes the centriolar component sas-6 and defects in its paternal function promote whole genome duplication	Developmental biology	2007	312(1)	44-60	
ZDB-PUB-071210-42	18062954	Raschperger, E., Neve, E.P., Wernerson, A., Hultenby, K., Pettersson, R.F., and Majumdar, A.	The coxsackie and adenovirus receptor (CAR) is required for renal epithelial differentiation within the zebrafish pronephros	Developmental biology	2008	313(1)	455-464	
ZDB-PUB-071227-2	18089288	Nakayama, Y., Miyake, A., Nakagawa, Y., Mido, T., Yoshikawa, M., Konishi, M., and Itoh, N.	Fgf19 is required for zebrafish lens and retina development	Developmental biology	2008	313(2)	752-766	
ZDB-PUB-080102-11	18164283	Wen, L., Wei, W., Gu, W., Huang, P., Ren, X., Zhang, Z., Zhu, Z., Lin, S., and Zhang, B.	Visualization of monoaminergic neurons and neurotoxicity of MPTP in live transgenic zebrafish	Developmental biology	2008	314(1)	84-92	
ZDB-PUB-080212-1	16890217	Dal-Pra, S., Fürthauer, M., Van-Celst, J., Thisse, B., and Thisse, C.	Noggin1 and Follistatin-like2 function redundantly to Chordin to antagonize BMP activity	Developmental biology	2006	298(2)	514-526	
ZDB-PUB-080218-9	18201692	Hanington, P.C., Patten, S.A., Reaume, L.M., Waskiewicz, A.J., Belosevic, M., and Ali, D.W.	Analysis of leukemia inhibitory factor and leukemia inhibitory factor receptor in embryonic and adult zebrafish (Danio rerio)	Developmental biology	2008	314(2)	250-260	
ZDB-PUB-080306-3	18281032	Pagnon-Minot, A., Malbouyres, M., Haftek-Terreau, Z., Kim, H.R., Sasaki, T., Thisse, C., Thisse, B., Ingham, P.W., Ruggiero, F., and Le Guellec, D.	Collagen XV, a novel factor in zebrafish notochord differentiation and muscle development	Developmental biology	2008	316(1)	21-35	
ZDB-PUB-080326-18	18342303	Blum, Y., Belting, H.G., Ellertsdottir, E., Herwig, L., Lüders, F., and Affolter, M.	Complex cell rearrangements during intersegmental vessel sprouting and vessel fusion in the zebrafish embryo	Developmental biology	2008	316(2)	312-322	
ZDB-PUB-080326-20	18342848	Kotani, T., and Kawakami, K.	misty somites, a maternal effect gene identified by transposon-mediated insertional mutagenesis in zebrafish that is essential for the somite boundary maintenance	Developmental biology	2008	316(2)	383-396	
ZDB-PUB-080331-6	18367159	Farooq, M., Sulochana, K.N., Pan, X., To, J., Sheng, D., Gong, Z., and Ge, R.	Histone deacetylase 3 (hdac3) is specifically required for liver development in zebrafish	Developmental biology	2008	317(1)	336-353	
ZDB-PUB-080408-9	18377889	Pendeville, H., Winandy, M., Manfroid, I., Nivelles, O., Motte, P., Pasque, V., Peers, B., Struman, I., Martial, J.A., and Voz, M.L.	Zebrafish Sox7 and Sox18 function together to control arterial-venous identity	Developmental biology	2008	317(2)	405-416	
ZDB-PUB-080506-11	18455719	Rastegar, S., Hess, I., Dickmeis, T., Nicod, J.C., Ertzer, R., Hadzhiev, Y., Thies, W.G., Scherer, G., and Strähle, U.	The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.	Developmental biology	2008	318(2)	366-377	
ZDB-PUB-080610-7	18514643	Liu, N.A., Ren, M., Song, J., Ríos, Y., Wawrowsky, K., Ben-Shlomo, A., Lin, S., and Melmed, S.	In vivo time-lapse imaging delineates the zebrafish pituitary proopiomelanocortin lineage boundary regulated by FGF3 signal	Developmental biology	2008	319(2)	192-200	
ZDB-PUB-080616-19	18544450	Emelyanov, A., and Parinov, S.	Mifepristone-inducible LexPR system to drive and control gene expression in transgenic zebrafish	Developmental biology	2008	320(1)	113-121	
ZDB-PUB-080630-16	18582857	Vervenne, H.B., Crombez, K.R., Lambaerts, K., Carvalho, L., Koeppen, M., Heisenberg, C.P., Van de Ven, W.J., and Petit, M.M.	Lpp is involved in Wnt/PCP signaling and acts together with Scrib to mediate convergence and extension movements during zebrafish gastrulation	Developmental biology	2008	320(1)	267-277	
ZDB-PUB-080714-1	18602094	Hardy, K.M., Garriock, R.J., Yatskievych, T.A., D'Agostino, S.L., Antin, P.B., and Krieg, P.A.	Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation	Developmental biology	2008	320(2)	391-401	
ZDB-PUB-080825-21	18680739	Batista, M.F., Jacobstein, J., and Lewis, K.E.	Zebrafish V2 cells develop into excitatory CiD and Notch signalling dependent inhibitory VeLD interneurons	Developmental biology	2008	322(2)	263-275	
ZDB-PUB-081121-2	19007769	Esterberg, R., and Fritz, A.	dlx3b/4b are required for the formation of the preplacodal region and otic placode through local modulation of BMP activity	Developmental biology	2009	325(1)	189-199	
ZDB-PUB-081203-33	19046963	Pei, W., and Feldman, B.	Identification of common and unique modifiers of zebrafish midline bifurcation and cyclopia	Developmental biology	2009	326(1)	201-211	
ZDB-PUB-090310-19	19268451	Esaki, M., Hoshijima, K., Nakamura, N., Munakata, K., Tanaka, M., Ookata, K., Asakawa, K., Kawakami, K., Wang, W., Weinberg, E.S., and Hirose, S.	Mechanism of development of ionocytes rich in vacuolar-type H(+)-ATPase in the skin of zebrafish larvae	Developmental biology	2009	329(1)	116-129	
ZDB-PUB-090310-21	19269286	Covassin, L.D., Siekmann, A.F., Kacergis, M.C., Laver, E., Moore, J.C., Villefranc, J.A., Weinstein, B.M., and Lawson, N.D.	A genetic screen for vascular mutants in zebrafish reveals dynamic roles for Vegf/Plcg1 signaling during artery development	Developmental biology	2009	329(2)	212-226	
ZDB-PUB-090407-19	19345202	Rothschild, S.C., Easley, C.A. 4th, Francescatto, L., Lister, J.A., Garrity, D.M., and Tombes, R.M.	Tbx5-mediated expression of Ca(2+)/calmodulin-dependent protein kinase II is necessary for zebrafish cardiac and pectoral fin morphogenesis	Developmental biology	2009	330(1)	175-184	
ZDB-PUB-090422-9	19371731	Bae, Y.K., Kani, S., Shimizu, T., Tanabe, K., Nojima, H., Kimura, Y., Higashijima, S.I., and Hibi, M.	Anatomy of zebrafish cerebellum and screen for mutations affecting its development	Developmental biology	2009	330(2)	406-426	
ZDB-PUB-090429-2	19389352	Mich, J.K., Blaser, H., Thomas, N.A., Firestone, A.J., Yelon, D., Raz, E., and Chen, J.K.	Germ cell migration in zebrafish is cyclopamine-sensitive but Smoothened-independent	Developmental biology	2009	328(2)	342-354	
ZDB-PUB-090429-8	19393641	Ebarasi, L., He, L., Hultenby, K., Takemoto, M., Betsholtz, C., Tryggvason, K., and Majumdar, A.	A reverse genetic screen in the zebrafish identifies crb2b as a regulator of the glomerular filtration barrier	Developmental biology	2009	334(1)	1-9	
ZDB-PUB-090511-17	19422817	Lamont, R.E., Lamont, E.J., and Childs, S.J.	Antagonistic interactions among Plexins regulate the timing of intersegmental vessel formation	Developmental biology	2009	331(2)	199-209	
ZDB-PUB-090526-2	19445916	Lee, Y., Hami, D., De Val, S., Kagermeier-Schenk, B., Wills, A.A., Black, B.L., Weidinger, G., and Poss, K.D.	Maintenance of blastemal proliferation by functionally diverse epidermis in regenerating zebrafish fins	Developmental biology	2009	331(2)	270-280	
ZDB-PUB-090616-29	19500567	Moro, E., Gnügge, L., Braghetta, P., Bortolussi, M., and Argenton, F.	Analysis of beta cell proliferation dynamics in zebrafish	Developmental biology	2009	332(2)	299-308	
ZDB-PUB-090616-31	19501583	Huang, C.C., Wang, T.C., Lin, B.H., Wang, Y.W., Johnson, S.L., and Yu, J.	Collagen IX is Required for the Integrity of Collagen II Fibrils and the Regulation of Vascular Plexus Formation in Zebrafish Caudal Fins	Developmental biology	2009	332(2)	360-370	
ZDB-PUB-090714-11	19580801	Jia, S., Wu, D., Xing, C., and Meng, A.	Smad2/3 activities are required for induction and patterning of the neuroectoderm in zebrafish	Developmental biology	2009	333(2)	273-284	
ZDB-PUB-090720-3	19607825	Maves, L., Tyler, A., Moens, C.B., and Tapscott, S.J.	Pbx acts with Hand2 in early myocardial differentiation	Developmental biology	2009	333(2)	409-418	
ZDB-PUB-090929-17	19782672	Komisarczuk, A.Z., Kawakami, K., and Becker, T.S.	Cis-regulation and chromosomal rearrangement of the fgf8 locus after the Teleost/tetrapod split	Developmental biology	2009	336(2)	301-312	
ZDB-PUB-961014-1061	1516755	Stainier, D.Y.R. and Fishman, M.C.	Patterning the zebrafish heart tube: acquisition of anteroposterior polarity	Developmental biology	1992	153	91-101	
ZDB-PUB-961014-1239	2985458	Westerfield, M. and Eisen, J.S.	The growth of motor axons in the spinal cord of Xenopus embryos	Developmental biology	1985	109	96-121	
ZDB-PUB-961014-16	7601313	Akimenko, M.A. and Ekker, M.	Anterior duplication of the Sonic hedgehog expression pattern in the pectoral fin buds of zebrafish treated with retinoic acid	Developmental biology	1995	170	243-247	
ZDB-PUB-961014-299	1936560	Felsenfeld, A.L., Curry, M., and Kimmel, C.B.	The fub-1 mutation blocks initial myofibril formation in zebrafish muscle pioneer cells	Developmental biology	1991	148	23-30	
ZDB-PUB-961014-570	5019939	Kimmel, C.B.	Mauthner axons in living fish larvae	Developmental biology	1972	27	272-275	
ZDB-PUB-961014-584	3972182	Kimmel, C.B. and Law, R.D.	Cell lineage of zebrafish blastomeres. I. Cleavage pattern and cytoplasmic bridges between cells	Developmental biology	1985	108	78-85	
ZDB-PUB-961014-870	7556901	Peters, K.G., Rao, P.S., Bell, B.S., and Kindman, L.A.	Green fluorescent fusion proteins: powerful tools for monitoring protein expression in live zebrafish embryos	Developmental biology	1995	171	252-257	
ZDB-PUB-961101-15	8806823	Essner, J.J., Laing, J.G., Beyer, E.C., Johnson, R.G., and Hackett, P.B. Jr.	Expression of zebrafish connexin43.4 in the notochord and tail bud of wild-type and mutant no tail embryos	Developmental biology	1996	177(2)	449-462	
ZDB-PUB-970107-2	8948584	Cooper, M.S. and D'Amico, L.A.	A cluster of noninvoluting endocytic cells at the margin of the zebrafish blastoderm marks the site of embryonic shield formation	Developmental biology	1996	180(1)	184-198	
ZDB-PUB-970121-7	8954740	Lee, K.H., Xu, Q., and Breitbart, R.E.	A new tinman-related gene, nkx2.7, anticipates the expression of nkx2.5 and nkx2.3 in zebrafish heart and pharyngeal endoderm	Developmental biology	1996	180(2)	722-731	
ZDB-PUB-970602-18	9142985	Abdelilah, S. and Driever, W.	Pattern formation in janus-mutant zebrafish embryos	Developmental biology	1997	184(1)	70-84	
ZDB-PUB-970812-3	9242415	Beattie, C.E., Hatta, K., Halpern, M.E., Liu, H., Eisen, J.S., and Kimmel, C.B.	Temporal separation in the specification of primary and secondary motoneurons in zebrafish	Developmental biology	1997	187(2)	171-182	
ZDB-PUB-970918-14	9119113	Fouquet, B., Weinstein, B.M., Serluca, F.C., and Fishman, M.C.	Vessel patterning in the embryo of the zebrafish: guidance by notochord	Developmental biology	1997	183(1)	37-48	
ZDB-PUB-970918-25	9073455	Slusarski, D.C., Yang-Snyder, J., Busa, W.B., and Moon, R.T.	Modulation of embryonic intracellular Ca2+ signaling by Wnt-5A	Developmental biology	1997	182(1)	114-120	
ZDB-PUB-980205-16	9441663	Higashijima, S., Nose, A., Eguchi, G., Hotta, Y., and Okamoto, H.	Mindin/F-spondin family: novel ECM proteins expressed in the zebrafish embryonic axis	Developmental biology	1997	192	211-227	
ZDB-PUB-980205-19	9441687	Miller-Bertoglio, V.E., Fisher, S., Sanchez, A., Mullins, M.C., and Halpern, M.	Differential regulation of chordin expression domains in mutant zebrafish	Developmental biology	1997	192	537-550	
ZDB-PUB-980903-5	9698446	Rebagliati, M.R., Toyama, R., Fricke, C., Haffter, P., and Dawid, I.B.	Zebrafish nodal-related genes are implicated in axial patterning and establishing left-right asymmetry	Developmental biology	1998	199	261-272	
ZDB-PUB-981006-5	9740662	Goldstein, A.M. and Fishman, M.C.	Notochord regulates cardiac lineage in zebrafish embryos	Developmental biology	1998	201	247-252	
ZDB-PUB-981208-28	9808780	Raz, E., Zlokarnik, G., Tsien, R.Y., and Driever, W.	ß-lactamase as a marker for gene expression in live zebrafish embryos	Developmental biology	1998	203	290-294	
ZDB-PUB-981208-31	9806777	Warga, R.M. and Nüsslein-Volhard, C.	Spadetail-dependent cell compaction of the dorsal zebrafish blastula	Developmental biology	1998	203	116-121	
ZDB-PUB-990119-20	9882485	Bauer, H., Meier, A., Hild, M., Stachel, S., Economides, A., Hazelett, D., Harland, R.M., and Hammerschmidt, M.	Follistatin and Noggin are excluded from the zebrafish organizer	Developmental biology	1998	204	488-507	
ZDB-PUB-990315-9	10068465	Hu, M. and Easter, Jr., S.S.	Retinal neurogenesis: the formation of the initial central patch of postmitotic cells	Developmental biology	1999	207	309-321	
ZDB-PUB-990416-2	10191060	Guo, S., Wilson, S.W., Cooke, S., Chitnis, A.B., Driever, W., and Rosenthal, A.	Mutations in the zebrafish unmask shared regulatory pathways controlling the development of catecholaminergic neurons	Developmental biology	1999	208	473-487	
ZDB-PUB-990607-12	10208748	Sinclair, A.M., Göttgens, B., Barton, L.M., Stanley, M.L., Pardanaud, L., Klaine, M., Gering, M., Bahn, S., Sanchez, M.-J., Bench, A.J., Fordham, J.L., Bockamp, E.-O., and Green, A.R.	Distinct 5' SCL enhancers direct transcription to developing brain, spinal cord, and endothelium: neural expression is mediated by GATA factor binding sites	Developmental biology	1999	209(1)	128-142	
ZDB-PUB-990920-1	10491254	Yelon, D., Horne, S.A., and Stainier, D.Y.R.	Restricted expression of cardiac myosin genes reveals regulated aspects of heart tube assembly in zebrafish	Developmental biology	1999	214(1)	23-37	
ZDB-PUB-990920-4	10491267	Fürthauer, M., Thisse, B., and Thisse, C.	Three different noggin genes antagonize the activity of bone morphogenetic proteins in the zebrafish embryo	Developmental biology	1999	214(1)	181-196	
ZDB-PUB-991217-2	none	Henken, D., Rennert, O., Whalin, M., and Hewitt, A.T.	Summary of second workshop on structural birth defects	Developmental biology	1999	216(2)	423-425	
ZDB-PUB-991102-9	10545228	Ober, E.A. and Schulte-Merker, S.	Signals from the yolk cell induce mesoderm, neuroectoderm, the trunk organizer, and the notochord in zebrafish	Developmental biology	1999	215(2)	167-181	
ZDB-PUB-091023-7	19799895	Hatler, J.M., Essner, J.J., and Johnson, R.G.	A gap junction connexin is required in the vertebrate left-right organizer	Developmental biology	2009	336(2)	183-191	
ZDB-PUB-091030-4	19059393	Willardsen, M.I., Suli, A., Pan, Y., Marsh-Armstrong, N., Chien, C.B., El-Hodiri, H., Brown, N.L., Moore, K.B., and Vetter, M.L.	Temporal regulation of Ath5 gene expression during eye development	Developmental biology	2009	326(2)	471-481	
ZDB-PUB-091101-2	19850031	Li, Q., Ritter, D., Yang, N., Dong, Z., Li, H., Chuang, J.H., and Guo, S.	A systematic approach to identify functional motifs within vertebrate developmental enhancers	Developmental biology	2010	337(2)	484-495	
ZDB-PUB-091204-19	19931525	Raeker, M.O., Bieniek, A.N., Ryan, A.S., Tsai, H.J., Zahn, K.M., and Russell, M.W.	Targeted deletion of the zebrafish obscurin A RhoGEF domain affects heart, skeletal muscle and brain development	Developmental biology	2010	337(2)	432-443	
ZDB-PUB-100105-8	20025865	Millimaki, B.B., Sweet, E.M., and Riley, B.B.	Sox2 is required for maintenance and regeneration, but not initial development, of hair cells in the zebrafish inner ear	Developmental biology	2010	338(2)	262-269	
ZDB-PUB-100105-21	20036229	Huang, C., Gu, S., Yu, P., Yu, F., Feng, C., Gao, N., and Du, J.	Deficiency of smarcal1 causes cell cycle arrest and developmental abnormalities in zebrafish	Developmental biology	2010	339(1)	89-100	
ZDB-PUB-100126-14	20096681	Christie, T.L., Carter, A., Rollins, E.L., and Childs, S.J.	Syk and Zap-70 function redundantly to promote angioblast migration	Developmental biology	2010	340(1)	22-29	
ZDB-PUB-100211-20	20138861	Hong, E., Jayachandran, P., and Brewster, R.	The polarity protein Pard3 is required for centrosome positioning during neurulation	Developmental biology	2010	\ 	\ 	
ZDB-PUB-100211-31	20144609	Punnamoottil, B., Herrmann, C., Pascual Anaya, J., D'Aniello, S., Garcia-Fernàndez, J., Akalin, A., Becker, T.S., and Rinkwitz, S.	Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes	Developmental biology	2010	\ 	\ 	
ZDB-PUB-100223-53	20171200	Wada, H., Ghysen, A., Satou, C., Higashijima, S.I., Kawakami, K., Hamaguchi, S., and Sakaizumi, M.	Dermal morphogenesis controls lateral line patterning during postembryonic development of teleost fish	Developmental biology	2010	\ 	\ 	
ZDB-PUB-100309-8	20193674	Williams, C., Kim, S.H., Ni, T.T., Mitchell, L., Ro, H., Penn, J.S., Baldwin, S.H., Solnica-Krezel, L., and Zhong, T.P.	Hedgehog signaling induces arterial endothelial cell formation by repressing venous cell fate	Developmental biology	2010	\ 	\ 	
ZDB-PUB-000309-32	10694428	Kanki, J.P. and Kuwada, J.Y.	Growth cones utilize both widespread and local directional cues in the zebrafish brain	Developmental biology	2000	219(2)	364-372	
ZDB-PUB-000824-21	10926766	Melby, A.E., Beach, C., Mullins, M., and Kimelman, D.	Patterning the early zebrafish by the opposing actions of bozozok and vox/vent	Developmental biology	2000	224(2)	275-285	
ZDB-PUB-001017-1	10985850	Kelsh, R.N., Schmid, B., and Eisen, J.S.	Genetic analysis of melanophore development in zebrafish embryos	Developmental biology	2000	225(2)	277-293	
ZDB-PUB-001019-9	11023682	Williams, J.A., Barrios, A., Gatchalian, C., Rubin, L., Wilson, S.W., and Holder, N.	Programmed cell death in zebrafish Rohon Beard neurons is influenced by TrkC1/NT-3 signaling	Developmental biology	2000	226(2)	220-230	
ZDB-PUB-001205-14	11071755	Park, H.-C., Kim, C.-H., Bae, Y.-K., Yee, S.-Y., Kim, S.-H., Hong, S.-K., Shin, J., Yoo, K.-W., Hibi, M., Hirano, T., Miki, N., Chitnis, A.B., and Huh, T.-L.	Analysis of upstream elements in the HuC promoter leads to the establishment of transgenic zebrafish with fluorescent neurons	Developmental biology	2000	227(2)	279-293	
ZDB-PUB-010130-2	11133157	Winkler, C. and Moon, R.T.	Zebrafish mdk2, a novel secreted midkine, participates in posterior neurogenesis	Developmental biology	2001	229(1)	102-118	
ZDB-PUB-010205-3	11180958	Yang, Z., Liu, N., and Lin, S.	A zebrafish forebrain-specific zinc finger gene can induce ectopic dlx2 and dlx6 expression	Developmental biology	2001	231(1)	138-148	
ZDB-PUB-010220-1	11180949	Chuang, J.-C. and Raymond, P.A.	Zebrafish genes rx1 and rx2 help define the region of forebrain that gives rise to retina	Developmental biology	2001	231	13-30	
ZDB-PUB-010220-12	11203696	Faucourt, M., Houliston, E., Besnardeau, L., Kimelman, D., and Lepage, T.	The pitx2 homeobox protein is required early for endoderm formation and nodal signaling	Developmental biology	2001	229(2)	287-306	
ZDB-PUB-010403-1	11401394	Kobayashi, M., Nishikawa, K., Suzuki, T., and Yamamoto, M.	The homeobox protein Six3 interacts with the Groucho corepressor and acts as a transcriptional repressor in eye and forebrain formation	Developmental biology	2001	232(2)	315-326	
ZDB-PUB-010423-2	11336499	Köster, R.W. and Fraser, S.E.	Tracing transgene expression in living zebrafish embryos	Developmental biology	2001	233(2)	329-346	
ZDB-PUB-010507-2	11397003	Reiter, J.F., Verkade, H., and Stainier, D.Y.R.	Bmp2b and Oep promote early myocardial differentiation through their regulation of gata5	Developmental biology	2001	234(2)	330-338	
ZDB-PUB-010514-1	11397014	Chan, J., Mably, J.D., Serluca, F.C., Chen, J.-N., Goldstein, N.B., Thomas, M.C., Cleary, J.A., Brennan, C., Fishman, M.C., and Roberts, T.M.	Morphogenesis of prechordal plate and notochord requires intact Eph/Ephrin B signaling	Developmental biology	2001	234(2)	470-482	
ZDB-PUB-010705-1	11437442	Phillips, B.T., Bolding, K., and Riley, B.B.	Zebrafish fgf3 and fgf8 encode redundant functions required for otic placode induction	Developmental biology	2001	235(2)	351-365	
ZDB-PUB-010912-1	11784007	Du, S., Frenkel, V., Kindschi, G., and Zohar, Y.	Visualizing normal and defective bone development in zebrafish embryos using the fluorescent chromophore calcein	Developmental biology	2001	238(2)	239-246	
ZDB-PUB-010918-1	11784010	Herbomel, P., Thisse, B., and Thisse, C.	Zebrafish early macrophages colonize cephalic mesenchyme and developing brain, retina, and epidermis through a M-CSF receptor-dependent invasive process	Developmental biology	2001	238(2)	274-288	
ZDB-PUB-011029-1	11784051	Cole, L. and Ross, L.	Apoptosis in the developing zebrafish embryo	Developmental biology	2001	240(1)	123-142	
ZDB-PUB-011113-1	11784077	Henry, C.A., Crawford, B.D., Yan, Y.-L., Postlethwait, J., Cooper, M.S., and Hille, M.B.	Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis	Developmental biology	2001	240(2)	474-487	
ZDB-PUB-020812-1	12167406	Lawson, N.D. and Weinstein, B.M.	In vivo imaging of embryonic vascular development using transgenic zebrafish	Developmental biology	2002	248(2)	307-318	
ZDB-PUB-021106-13	12413901	Hall, C.J., Flores, M.V.C., Davidson, A.J., Crosier, K.E., and Crosier, P.S.	Radar is required for the establishment of vascular integrity in the zebrafish	Developmental biology	2002	251(1)	105-117	
ZDB-PUB-030115-34	12482713	Zeller, J., Schneider, V., Malayaman, S., Higashijima, S., Okamoto, H., Gui, J., Lin, S., and Granato, M.	Migration of zebrafish spinal motor nerves into the periphery requires multiple myotome-derived cues	Developmental biology	2002	252(2)	241-256	
ZDB-PUB-030312-10	12618137	Kurita, R., Sagara, H., Aoki, Y., Link, B.A., Arai, K.-I., and Watanabe, S.	Suppression of lens growth by alphaA-crystallin promoter-driven expression of diphtheria toxin results in disruption of retinal cell organization in zebrafish	Developmental biology	2003	255(1)	113-127	
ZDB-PUB-030312-8	12618131	Wallace, K.N. and Pack, M.	Unique and conserved aspects of gut development in zebrafish	Developmental biology	2003	255(1)	12-29	
ZDB-PUB-030408-3	12679099	Parichy, D.M., Turner, J.M., and Parker, N.B.	Essential role for puma in development of postembryonic neural crest-derived cell lineages in zebrafish	Developmental biology	2003	256(2)	221-241	
ZDB-PUB-030716-22	12798288	Fadool, J.M.	Development of a rod photoreceptor mosaic revealed in transgenic zebrafish	Developmental biology	2003	258(2)	277-290	
ZDB-PUB-030728-8	12871708	Westfall, T.A., Hjertos, B., and Slusarski, D.C.	Requirement for intracellular calcium modulation in zebrafish dorsal-ventral patterning	Developmental biology	2003	259(2)	380-391	
ZDB-PUB-030730-7	12885566	Chai, C., Liu, Y., and Chan, W.K.	Ff1b is required for the development of steroidogenic component of the zebrafish interrenal organ	Developmental biology	2003	260(1)	226-244	
ZDB-PUB-030924-4	14499649	Warga, R.M. and Kane, D.A.	One-eyed pinhead regulates cell motility independent of Squint/Cyclops signaling	Developmental biology	2003	261(2)	391-411	
ZDB-PUB-031001-8	14512025	Rawls, J.F. and Johnson, S.L.	Temporal and molecular separation of the kit receptor tyrosine kinase's roles in zebrafish melanocyte migration and survival	Developmental biology	2003	262(1)	152-161	
ZDB-PUB-031022-1	14568547	Elsalini, O.A., Gartzen, J., Cramer, M., and Rohr, K.B.	Zebrafish hhex, nk2.1a, and pax2.1 regulate thyroid growth and differentiation downstream of Nodal-dependent transcription factors	Developmental biology	2003	263(1)	67-80	
ZDB-PUB-031119-4	14623246	Kinsey, W.H., Wu, W., and Macgregor, E.	Activation of Src-family PTK activity at fertilization: role of the SH2 domain	Developmental biology	2003	264(1)	255-262	
ZDB-PUB-031204-2	14651930	Griffin, K.J. and Kimelman, D.	Interplay between FGF, one-eyed pinhead, and T-box transcription factors during zebrafish posterior development	Developmental biology	2003	264(2)	456-466	
ZDB-PUB-031204-3	14651927	Knowlton, M.N., Chan, B.M., and Kelly, G.M.	The zebrafish band 4.1 member Mir is involved in cell movements associated with gastrulation	Developmental biology	2003	264(2)	407-429	
ZDB-PUB-040225-3	14975713	Kalinowski, R.R., Berlot, C.H., Jones, T.L., Ross, L.F., Jaffe, L.A., and Mehlmann, L.M.	Maintenance of meiotic prophase arrest in vertebrate oocytes by a G(s) protein-mediated pathway	Developmental biology	2004	267(1)	1-13	
ZDB-PUB-040312-2	15013807	Kudo, H., Amizuka, N., Araki, K., Inohaya, K., and Kudo A.	Zebrafish periostin is required for the adhesion of muscle fiber bundles to the myoseptum and for the differentiation of muscle fibers	Developmental biology	2004	267(2)	473-487	
ZDB-PUB-040415-5	15081362	Li, Q., Shirabe, K., and Kuwada, J,Y.	Chemokine signaling regulates sensory cell migration in zebrafish	Developmental biology	2004	269(1)	123-136	
ZDB-PUB-040514-8	15136152	Downes, G.B., and Granato, M.	Acetylcholinesterase function is dispensable for sensory neurite growth but is critical for neuromuscular synapse stability	Developmental biology	2004	270(1)	232-245	
ZDB-PUB-040609-3	15183718	Kennedy, B.N., Stearns, G.W., Smyth, V.A., Ramamurthy, V., van Eeden, F., Ankoudinova, I., Raible, D., Hurley, J.B., and Brockerhoff, S.E.	Zebrafish rx3 and mab21l2 are required during eye morphogenesis	Developmental biology	2004	270(2)	336-349	
ZDB-PUB-040617-5	15196956	Cao, Y., Zhao, J., Sun, Z., Zhao, Z., Postlethwait, J., and Meng, A.	fgf17b, a novel member of Fgf family, helps patterning zebrafish embryos	Developmental biology	2004	271(1)	130-143	
ZDB-PUB-040701-4	15223339	Choe, S.K., and Sagerström, C.G.	Paralog group 1 hox genes regulate rhombomere 5/6 expression of vhnf1, a repressor of rostral hindbrain fates, in a meis-dependent manner	Developmental biology	2004	271(2)	350-361	
ZDB-PUB-040804-4	15282151	Seiler, C., Ben-David, O., Sidi, S., Hendrich, O., Rusch, A., Burnside, B., Avraham, K.B., and Nicolson, T.	Myosin VI is required for structural integrity of the apical surface of sensory hair cells in zebrafish	Developmental biology	2004	272(2)	328-338	
ZDB-PUB-040913-1	15355794	Jackman, W.R., Draper, B.W., and Stock, D.W.	Fgf signaling is required for zebrafish tooth development	Developmental biology	2004	274(1)	139-157	
ZDB-PUB-041004-5	15385156	Matthews, R.P., Lorent, K., Russo, P., and Pack, M.	The zebrafish onecut gene hnf-6 functions in an evolutionarily conserved genetic pathway that regulates vertebrate biliary development	Developmental biology	2004	274(2)	245-259	
ZDB-PUB-041008-4	15464585	Penberthy, W.T., Zhao, C., Zhang, Y., Jessen, J.R., Yang, Z., Bricaud, O., Collazo, A., Meng, A., and Lin, S.	Pur alpha and Sp8 as opposing regulators of neural gata2 expression	Developmental biology	2004	275(1)	225-234	
ZDB-PUB-041029-3	15464576	Gauchat, D., Escriva, H., Miljkovic-Licina, M., Chera, S., Langlois, M.C., Begue, A., Laudet, V., and Galliot, B.	The orphan COUP-TF nuclear receptors are markers for neurogenesis from cnidarians to vertebrates	Developmental biology	2004	275(1)	104-123	
ZDB-PUB-041111-2	15531361	Ragland, J.W., and Raible, D.W.	Signals derived from the underlying mesoderm are dispensable for zebrafish neural crest induction	Developmental biology	2004	276(1)	16-30	
ZDB-PUB-041111-3	15531374	Song, M.H., Brown, N.L., and Kuwada, J.Y.	The cfy mutation disrupts cell divisions in a stage-dependent manner in zebrafish embryos	Developmental biology	2004	276(1)	194-206	
ZDB-PUB-041202-5	15572145	Tsai, W.B., Zhang, X., Sharma, D., Wu, W., and Kinsey, W.H.	Role of Yes kinase during early zebrafish development	Developmental biology	2005	277(1)	129-141	
ZDB-PUB-041208-11	15581885	Bischof, J., and Driever, W.	Regulation of hhex expression in the yolk syncytial layer, the potential Nieuwkoop center homolog in zebrafish	Developmental biology	2004	276(2)	552-562	
ZDB-PUB-041208-9	15581882	Hogan, B.M., Hunter, M.P., Oates, A.C., Crowhurst, M.O., Hall, N.E., Heath, J.K., Prince, V.E., and Lieschke, G.J.	Zebrafish gcm2 is required for gill filament budding from pharyngeal ectoderm	Developmental biology	2004	276(2)	508-522	
ZDB-PUB-041228-22	15617692	Tyurina, O.V., Guner, B., Popova, E., Feng, J., Schier, A.F., Kohtz, J.D., and Karlstrom, R.O.	Zebrafish Gli3 functions as both an activator and a repressor in Hedgehog signaling	Developmental biology	2005	277(2)	537-556	
ZDB-PUB-050119-9	15649473	Iovine, M.K., Higgins, E.P., Hindes, A., Coblitz, B., and Johnson, S.L.	Mutations in connexin43 (GJA1) perturb bone growth in zebrafish fins	Developmental biology	2005	278(1)	208-219	
ZDB-PUB-050202-3	15680360	Emoto, Y., Wada, H., Okamoto, H., Kudo, A., and Imai, Y.	Retinoic acid-metabolizing enzyme Cyp26a1 is essential for determining territories of hindbrain and spinal cord in zebrafish	Developmental biology	2005	278(2)	415-427	
ZDB-PUB-050215-7	15708563	Shimizu, T., Bae, Y.K., Muraoka, O., and Hibi, M.	Interaction of Wnt and caudal-related genes in zebrafish posterior body formation	Developmental biology	2005	279(1)	125-141	
ZDB-PUB-050513-3	15882579	Yu, H.H., and Moens, C.B.	Semaphorin signaling guides cranial neural crest cell migration in zebrafish	Developmental biology	2005	280(2)	373-385	
ZDB-PUB-050603-5	15921674	Oates, A.C., Rohde, L.A., and Ho, R.K.	Generation of segment polarity in the paraxial mesoderm of the zebrafish through a T-box-dependent inductive event	Developmental biology	2005	283(1)	204-214	
ZDB-PUB-050607-17	15936329	diIorio, P.J., Runko, A., Farrell, C.A., and Roy, N.	Sid4: A secreted vertebrate immunoglobulin protein with roles in zebrafish embryogenesis	Developmental biology	2005	282(1)	55-69	
ZDB-PUB-050727-4	16024012	Schonthaler, H.B., Lampert, J.M., von Lintig, J., Schwarz, H., Geisler, R., and Neuhauss, S.C.	A mutation in the silver gene leads to defects in melanosome biogenesis and alterations in the visual system in the zebrafish mutant fading vision	Developmental biology	2005	284(2)	421-436	
ZDB-PUB-050818-16	16102744	Panzer, J.A., Gibbs, S.M., Dosch, R., Wagner, D., Mullins, M.C., Granato, M., and Balice-Gordon, R.J.	Neuromuscular synaptogenesis in wild-type and mutant zebrafish	Developmental biology	2005	285(2)	340-357	
ZDB-PUB-050825-5	16112104	Sharma, D., Holets, L., Zhang, X., and Kinsey, W.H.	Role of Fyn kinase in signaling associated with epiboly during zebrafish development	Developmental biology	2005	285(2)	462-476	
ZDB-PUB-050913-5	16154557	Lyman Gingerich, J., Westfall, T.A., Slusarski, D.C., and Pelegri, F.	hecate, a zebrafish maternal effect gene, affects dorsal organizer induction and intracellular calcium transient frequency	Developmental biology	2005	286(2)	427-439	
ZDB-PUB-050920-2	16162335	Sheela, S.G., Lee, W.C., Lin, W.W., and Chung, B.C.	Zebrafish ftz-f1a (nuclear receptor 5a2) functions in skeletal muscle organization	Developmental biology	2005	286(2)	377-390	
ZDB-PUB-051005-4	16197938	Prabhudesai, S.N., Cameron, D.A., and Stenkamp, D.L.	Targeted effects of retinoic acid signaling upon photoreceptor development in zebrafish	Developmental biology	2005	287(1)	157-167	
ZDB-PUB-051012-23	16216239	Bisgrove, B.W., Snarr, B.S., Emrazian, A., and Yost, H.J.	Polaris and Polycystin-2 in dorsal forerunner cells and Kupffer's vesicle are required for specification of the zebrafish left-right axis	Developmental biology	2005	287(2)	274-288	
ZDB-PUB-051019-8	16225858	Henry, C.A., McNulty, I.M., Durst, W.A., Munchel, S.E., and Amacher, S.L.	Interactions between muscle fibers and segment boundaries in zebrafish	Developmental biology	2005	287(2)	346-360	
ZDB-PUB-051031-1	16231865	Avanesov, A., Dahm, R., Sewell, W.F., and Malicki, J.J.	Mutations that affect the survival of selected amacrine cell subpopulations define a new class of genetic defects in the vertebrate retina	Developmental biology	2005	285(1)	138-155	
ZDB-PUB-051101-14	16256099	Miyake, A., Nakayama, Y., Konishi, M., and Itoh, N.	Fgf19 regulated by Hh signaling is required for zebrafish forebrain development	Developmental biology	2005	288(1)	259-275	
ZDB-PUB-051207-18	16321372	Pollard, S.M., Parsons, M.J., Kamei, M., Kettleborough, R.N., Thomas, K.A., Pham, V.N., Bae, M.K., Scott, A., Weinstein, B.M., and Stemple, D.L.	Essential and overlapping roles for laminin alpha chains in notochord and blood vessel formation	Developmental biology	2006	289(1)	64-76	
ZDB-PUB-060105-21	16386728	Lee, H.C., Huang, H.Y., Lin, C.Y., Chen, Y.H., and Tsai, H.J.	Foxd3 mediates zebrafish myf5 expression during early somitogenesis	Developmental biology	2006	290(2)	359-372	
ZDB-PUB-060124-6	16405941	Grimes, A.C., Stadt, H.A., Shepherd, I.T., and Kirby, M.L.	Solving an enigma: Arterial pole development in the zebrafish heart	Developmental biology	2006	290(2)	265-276	
ZDB-PUB-060207-6	16448642	Horvay, K., Claussen, M., Katzer, M., Landgrebe, J., and Pieler, T.	Xenopus Dead end mRNA is a localized maternal determinant that serves a conserved function in germ cell development	Developmental biology	2006	291(1)	1-11	
ZDB-PUB-060210-4	16457799	Muto, A., Arai, K.I., and Watanabe, S.	Rab11-FIP4 is predominantly expressed in neural tissues and involved in proliferation as well as in differentiation during zebrafish retinal development	Developmental biology	2006	292(1)	90-102	
ZDB-PUB-060306-12	16499899	Stewart, R.A., Arduini, B.L., Berghmans, S., George, R.E., Kanki, J.P., Henion, P.D., and Look, A.T.	Zebrafish foxd3 is selectively required for neural crest specification, migration and survival	Developmental biology	2006	292(1)	174-188	
ZDB-PUB-060403-5	16566913	Blasiole, B., Canfield, V.A., Vollrath, M.A., Huss, D., Mohideen, M.A., Dickman, J.D., Cheng, K.C., Fekete, D.M., and Levenson, R.	Separate Na,K-ATPase genes are required for otolith formation and semicircular canal development in zebrafish	Developmental biology	2006	294(1)	148-160	
ZDB-PUB-060412-16	16603149	Pujic, Z., Omori, Y., Tsujikawa, M., Thisse, B., Thisse, C., and Malicki, J.	Reverse genetic analysis of neurogenesis in the zebrafish retina	Developmental biology	2006	293(2)	330-347	
ZDB-PUB-060508-16	16674935	Rangarajan, J., Luo, T., and Sargent, T.D.	PCNS: A novel protocadherin required for cranial neural crest migration and somite morphogenesis in Xenopus	Developmental biology	2006	295(1)	206-218	
ZDB-PUB-060517-29	16698010	Sharma, D., and Kinsey, W.H.	Fertilization triggers localized activation of Src-family protein kinases in the zebrafish egg	Developmental biology	2006	295(2)	604-614	
ZDB-PUB-060517-7	16678150	Sarrazin, A.F., Villablanca, E.J., Nunez, V.A., Sandoval, P.C., Ghysen, A., and Allende, M.L.	Proneural gene requirement for hair cell differentiation in the zebrafish lateral line	Developmental biology	2006	295(2)	534-545	
ZDB-PUB-060616-30	16753140	Liu, Y.W., and Guo, L.	Endothelium is required for the promotion of interrenal morphogenetic movement during early zebrafish development	Developmental biology	2006	297(1)	44-58	
ZDB-PUB-060616-9	16729994	Conway, G.	STAT3-dependent pathfinding and control of axonal branching and target selection	Developmental biology	2006	296(1)	119-136	
ZDB-PUB-060719-12	16828638	Adolf, B., Chapouton, P., Lam, C.S., Topp, S., Tannhauser, B., Strahle, U., Gotz, M., and Bally-Cuif, L.	Conserved and acquired features of adult neurogenesis in the zebrafish telencephalon	Developmental biology	2006	295(1)	278-293	
ZDB-PUB-060724-12	16844108	Goldsmith, M.I., Iovine, M.K., O'reilly-Pol, T., and Johnson, S.L.	A developmental transition in growth control during zebrafish caudal fin development	Developmental biology	2006	296(2)	450-457	
ZDB-PUB-060724-4	16839543	Kazakova, N., Li, H., Mora, A., Jessen, K.R., Mirsky, R., Richardson, W.D., and Smith, H.K.	A screen for mutations in zebrafish that affect myelin gene expression in Schwann cells and oligodendrocytes	Developmental biology	2006	297(1)	1-13	
ZDB-PUB-060731-4	16860306	Hadrys, T., Punnamoottil, B., Pieper, M., Kikuta, H., Pezeron, G., Becker, T.S., Prince, V., Baker, R., and Rinkwitz, S.	Conserved co-regulation and promoter sharing of hoxb3a and hoxb4a in zebrafish	Developmental biology	2006	297(1)	26-43	
ZDB-PUB-060807-3	16876779	Latimer, A.J., and Appel, B.	Notch signaling regulates midline cell specification and proliferation in zebrafish	Developmental biology	2006	298(2)	392-402	
ZDB-PUB-060816-26	16904099	Machingo, Q.J., Fritz, A., and Shur, B.D.	A beta1,4-galactosyltransferase is required for convergent extension movements in zebrafish	Developmental biology	2006	297(2)	471-482	
ZDB-PUB-060921-23	16982050	van der Meer, D.L., Marques, I.J., Leito, J.T., Besser, J., Bakkers, J., Schoonheere, E., and Bagowski, C.P.	Zebrafish cypher is important for somite formation and heart development	Developmental biology	2006	299(2)	356-372	
ZDB-PUB-061010-9	17007832	Lin, C.Y., Yung, R.F., Lee, H.C., Chen, W.T., Chen, Y.H., and Tsai, H.J.	Myogenic regulatory factors Myf5 and Myod function distinctly during craniofacial myogenesis of zebrafish	Developmental biology	2006	299(2)	594-608	
ZDB-PUB-061020-4	17010333	Nolte, C., Rastegar, M., Amores, A., Bouchard, M., Grote, D., Maas, R., Kovacs, E.N., Postlethwait, J., Rambaldi, I., Rowan, S., Yan, Y.L., Zhang, F., and Featherstone, M.	Stereospecificity and PAX6 function direct Hoxd4 neural enhancer activity along the antero-posterior axis	Developmental biology	2006	299(2)	582-593	
ZDB-PUB-061020-6	17011543	Tena, J.J., Neto, A., de la Calle-Mustienes, E., Bras-Pereira, C., Casares, F., and Gomez-Skarmeta, J.L.	Odd-skipped genes encode repressors that control kidney development	Developmental biology	2007	301(2)	518-531	
ZDB-PUB-061205-18	17125762	Pham, V.N., Lawson, N.D., Mugford, J.W., Dye, L., Castranova, D., Lo, B., and Weinstein, B.M.	Combinatorial function of ETS transcription factors in the developing vasculature	Developmental biology	2007	303(2)	772-783	
ZDB-PUB-061227-11	17134690	Yeo, S.Y., Kim, M., Kim, H.S., Huh, T.L., and Chitnis, A.B.	Fluorescent protein expression driven by her4 regulatory elements reveals the spatiotemporal pattern of Notch signaling in the nervous system of zebrafish embryos	Developmental biology	2007	301(2)	555-567	
ZDB-PUB-061227-30	17157288	Ertzer, R., Muller, F., Hadzhiev, Y., Rathnam, S., Fischer, N., Rastegar, S., and Strahle, U.	Cooperation of sonic hedgehog enhancers in midline expression	Developmental biology	2007	301(2)	578-589	
ZDB-PUB-061229-29	17189627	Wohlgemuth, S.L., Crawford, B.D., and Pilgrim, D.B.	The myosin co-chaperone UNC-45 is required for skeletal and cardiac muscle function in zebrafish	Developmental biology	2007	303(2)	483-492	
ZDB-PUB-070210-22	17239364	Walker, M.B., Miller, C.T., Swartz, M.E., Eberhart, J.K., and Kimmel, C.B.	phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish	Developmental biology	2007	304(1)	194-207	
ZDB-PUB-070210-45	17258191	Abe, G., Ide, H., and Tamura, K.	Function of FGF signaling in the developmental process of the median fin fold in zebrafish	Developmental biology	2007	304(1)	355-366	
ZDB-PUB-070212-12	17261279	Yokoi, H., Shimada, A., Carl, M., Takashima, S., Kobayashi, D., Narita, T., Jindo, T., Kimura, T., Kitagawa, T., Kage, T., Sawada, A., Naruse, K., Asakawa, S., Shimizu, N., Mitani, H., Shima, A., Tsutsumi, M., Hori, H., Wittbrodt, J., Saga, Y., Ishikawa, Y., Araki, K., and Takeda, H.	Mutant analyses reveal different functions of fgfr1 in medaka and zebrafish despite conserved ligand-receptor relationships	Developmental biology	2007	304(1)	326-337	
ZDB-PUB-070212-27	17274976	Shankaran, S.S., Sieger, D., Schroter, C., Czepe, C., Pauly, M.C., Laplante, M.A., Becker, T.S., Oates, A.C., and Gajewski, M.	Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock	Developmental biology	2007	304(2)	615-632	
ZDB-PUB-070303-21	17306248	Choi, J., Dong, L., Ahn, J., Dao, D., Hammerschmidt, M., and Chen, J.N.	FoxH1 negatively modulates flk1 gene expression and vascular formation in zebrafish	Developmental biology	2007	304(2)	735-744	
ZDB-PUB-070303-40	17331493	Zhang, C., Li, Q., Lim, C.H., Qiu, X., and Jiang, Y.J.	The characterization of zebrafish antimorphic mib alleles reveals that Mib and Mind bomb-2 (Mib2) function redundantly	Developmental biology	2007	305(1)	14-27	
ZDB-PUB-070504-20	17462622	Marx, M., Rivera-Milla, E., Stummeyer, K., Gerardy-Schahn, R., and Bastmeyer, M.	Divergent evolution of the vertebrate polysialyltransferase Stx and Pst genes revealed by fish-to-mammal comparison	Developmental biology	2007	306(2)	560-571	
ZDB-PUB-070523-20	17509554	Lakowski, J., Majumder, A., and Lauderdale, J.D.	Mechanisms controlling Pax6 isoform expression in the retina have been conserved between teleosts and mammals	Developmental biology	2007	307(2)	498-520	
ZDB-PUB-070629-11	17574232	Miller, C.T., Swartz, M.E., Khuu, P.A., Walker, M.B., Eberhart, J.K., and Kimmel, C.B.	mef2ca is required in cranial neural crest to effect Endothelin1 signaling in zebrafish	Developmental biology	2007	308(1)	144-157	
ZDB-PUB-070629-25	17583692	Pei, W., Williams, P.H., Clark, M.D., Stemple, D.L., and Feldman, B.	Environmental and genetic modifiers of squint penetrance during zebrafish embryogenesis	Developmental biology	2007	308(2)	368-378	
ZDB-PUB-070711-20	17601532	Kim, K.H., Antkiewicz, D.S., Yan, L., Eliceir, K.W., Heideman, W., Peterson, R.E., and Lee, Y.	Lrrc10 is required for early heart development and function in zebrafish	Developmental biology	2007	308(2)	494-506	
ZDB-PUB-070806-13	17651720	Rohrschneider, M.R., Elsen, G.E., and Prince, V.E.	Zebrafish Hoxb1a regulates multiple downstream genes including prickle1b	Developmental biology	2007	309(2)	358-372	
ZDB-PUB-070806-2	17727832	Stickney, H.L., Imai, Y., Draper, B., Moens, C. and Talbot, W.S.	Zebrafish bmp4 functions during late gastrulation to specify ventroposterior cell fates	Developmental biology	2007	310(1)	71-84	
ZDB-PUB-070813-8	17678642	Steffen, L.S., Guyon, J.R., Vogel, E.D., Howell, M.H., Zhou, Y., Weber, G.J., Zon, L.I., and Kunkel, L.M.	The zebrafish runzel muscular dystrophy is linked to the titin gene	Developmental biology	2007	309(2)	180-192	
ZDB-PUB-071029-2	17950269	Holtzinger, A., and Evans, T.	Gata5 and Gata6 are functionally redundant in zebrafish for specification of cardiomyocytes	Developmental biology	2007	312(2)	613-622	
ZDB-PUB-071210-43	18062957	Bonner, J., Gribble, S.L., Veien, E.S., Nikolaus, O.B., Weidinger, G., and Dorsky, R.I.	Proliferation and patterning are mediated independently in the dorsal spinal cord downstream of canonical Wnt signaling	Developmental biology	2008	313(1)	398-407	
ZDB-PUB-071227-20	18158147	Sperber, S.M., Saxena, V., Hatch, G., and Ekker, M.	Zebrafish dlx2a contributes to hindbrain neural crest survival, is necessary for differentiation of sensory ganglia and functions with dlx1a in maturation of the arch cartilage elements	Developmental biology	2008	314(1)	59-70	
ZDB-PUB-080124-12	18178183	Sullivan-Brown, J., Schottenfeld, J., Okabe, N., Hostetter, C.L., Serluca, F.C., Thiberge, S.Y., and Burdine, R.D.	Zebrafish mutations affecting cilia motility share similar cystic phenotypes and suggest a mechanism of cyst formation that differs from pkd2 morphants	Developmental biology	2008	314(2)	261-275	
ZDB-PUB-080209-8	18191121	Elsen, G.E., Choi, L.Y., Millen, K.J., Grinblat, Y., and Prince, V.E.	Zic1 and Zic4 regulate zebrafish roof plate specification and hindbrain ventricle morphogenesis	Developmental biology	2008	314(2)	376-392	
ZDB-PUB-080218-29	18215655	Lachnit, M., Kur, E., and Driever, W.	Alterations of the cytoskeleton in all three embryonic lineages contribute to the epiboly defect of Pou5f1/Oct4 deficient MZspg zebrafish embryos	Developmental biology	2008	315(1)	1-17	
ZDB-PUB-080306-2	18280464	Inoue, F., Parvin, M.S., and Yamasu, K.	Transcription of fgf8 is regulated by activating and repressive cis-elements at the midbrain-hindbrain boundary in zebrafish embryos	Developmental biology	2008	316(2)	471-486	
ZDB-PUB-080327-10	18358469	Pocock, R., Mione, M., Hussain, S., Maxwell, S., Pontecorvi, M., Aslam, S., Gerrelli, D., Sowden, J.C., and Woollard, A.	Neuronal function of Tbx20 conserved from nematodes to vertebrates	Developmental biology	2008	317(2)	671-685	
ZDB-PUB-080415-16	18407257	Qu, X., Jia, H., Garrity, D.M., Tompkins, K., Batts, L., Appel, B., Zhong, T.P., and Baldwin, H.S.	ndrg4 is required for normal myocyte proliferation during early cardiac development in zebrafish	Developmental biology	2008	317(2)	486-496	
ZDB-PUB-080422-3	18417109	Minchin, J.E., and Hughes, S.M.	Sequential actions of Pax3 and Pax7 drive xanthophore development in zebrafish neural crest	Developmental biology	2008	317(2)	508-522	
ZDB-PUB-080429-12	18440502	Herpin, A., Fischer, P., Liedtke, D., Kluever, N., Neuner, C., Raz, E., and Schartl, M.	Sequential SDF1a and b-induced mobility guides Medaka PGC migration	Developmental biology	2008	320(2)	319-327	
ZDB-PUB-080429-6	18430417	Mara, A., Schroeder, J., and Holley, S.A.	Two deltaC splice-variants have distinct signaling abilities during somitogenesis and midline patterning	Developmental biology	2008	318(1)	126-132	
ZDB-PUB-080429-9	18436202	Reichenbach, B., Delalande, J.M., Kolmogorova, E., Prier, A., Nguyen, T., Smith, C.M., Holzschuh, J., and Shepherd, I.T.	Endoderm-derived Sonic hedgehog and mesoderm Hand2 expression are required for enteric nervous system development in zebrafish	Developmental biology	2008	318(1)	52-64	
ZDB-PUB-080515-2	18468594	Aamar, E., and Dawid, I.B.	Protocadherin-18a has a role in cell adhesion, behavior and migration in zebrafish development	Developmental biology	2008	318(2)	335-346	
ZDB-PUB-080610-2	18514183	Mei, J., Zhang, Q.Y., Li, Z., Lin, S., and Gui, J.F.	C1q-like inhibits p53-mediated apoptosis and controls normal hematopoiesis during zebrafish embryogenesis	Developmental biology	2008	319(2)	273-284	
ZDB-PUB-080616-4	18534570	Dutta, S., Dietrich, J.E., Westerfield, M., and Varga, Z.M.	Notch signaling regulates endocrine cell specification in the zebrafish anterior pituitary	Developmental biology	2008	319(2)	248-257	
ZDB-PUB-080630-14	18582455	Marlow, F.L., and Mullins, M.C.	Bucky ball functions in Balbiani body assembly and animal-vegetal polarity in the oocyte and follicle cell layer in zebrafish	Developmental biology	2008	321(1)	40-50	
ZDB-PUB-080701-3	18585699	Goessling, W., North, T.E., Lord, A.M., Ceol, C., Lee, S., Weidinger, G., Bourque, C., Strijbosch, R., Haramis, A.P., Puder, M., Clevers, H., Moon, R.T., and Zon, L.I.	APC mutant zebrafish uncover a changing temporal requirement for wnt signaling in liver development	Developmental biology	2008	320(1)	161-174	
ZDB-PUB-080707-2	18590717	Sperber, S.M., and Dawid, I.B.	barx1 is necessary for ectomesenchyme proliferation and osteochondroprogenitor condensation in the zebrafish pharyngeal arches	Developmental biology	2008	321(1)	101-110	
ZDB-PUB-080722-23	18638469	Ahn, D., and Ho, R.K.	Tri-phasic expression of posterior Hox genes during development of pectoral fins in zebrafish: Implications for the evolution of vertebrate paired appendages	Developmental biology	2008	322(1)	220-233	
ZDB-PUB-080728-14	18652819	Hashiguchi, M., Shinya, M., Tokumoto, M., and Sakai, N.	Nodal/Bozozok-independent induction of the dorsal organizer by zebrafish cell lines	Developmental biology	2008	321(2)	387-396	
ZDB-PUB-080922-1	18789916	Bessarab, D.A., Chong, S.W., Srinivas, B.P., and Korzh, V.	Six1a is required for the onset of fast muscle differentiation in zebrafish	Developmental biology	2008	323(2)	216-228	
ZDB-PUB-081001-10	18817769	Munson, C., Huisken, J., Bit-Avragim, N., Kuo, T., Dong, P.D., Ober, E.A., Verkade, H., Abdelilah-Seyfried, S., and Stainier, D.Y.	Regulation of neurocoel morphogenesis by Pard6gammab	Developmental biology	2008	324(1)	41-54	
ZDB-PUB-081022-32	18926812	Berndt, J.D., Clay, M.R., Langenberg, T., and Halloran, M.C.	Rho-kinase and myosin II affect dynamic neural crest cell behaviors during epithelial to mesenchymal transition in vivo	Developmental biology	2008	324(2)	236-244	
ZDB-PUB-081022-38	18929555	Linville, A., Radtke, K., Waxman, J.S., Yelon, D., and Schilling, T.F.	Combinatorial roles for zebrafish retinoic acid receptors in the hindbrain, limbs and pharyngeal arches	Developmental biology	2009	325(1)	60-70	
ZDB-PUB-081114-2	18992237	Suster, M.L., Kania, A., Liao, M., Asakawa, K., Charron, F., Kawakami, K., and Drapeau, P.	A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals	Developmental biology	2009	325(2)	422-433	
ZDB-PUB-081121-15	19013446	Sittaramane, V., Sawant, A., Wolman, M.A., Maves, L., Halloran, M.C., and Chandrasekhar, A.	The cell adhesion molecule Tag1, transmembrane protein Stbm/Vangl2, and Lamininalpha1 exhibit genetic interactions during migration of facial branchiomotor neurons in zebrafish	Developmental biology	2009	325(2)	363-373	
ZDB-PUB-081121-20	19014929	Kizil, C., Otto, G.W., Geisler, R., Nüsslein-Volhard, C., and Antos, C.L.	Simplet controls cell proliferation and gene transcription during zebrafish caudal fin regeneration	Developmental biology	2009	325(2)	329-340	
ZDB-PUB-081218-15	19073165	Navratilova, P., Fredman, D., Hawkins, T.A., Turner, K., Lenhard, B., and Becker, T.S.	Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes	Developmental biology	2009	327(2)	526-540	
ZDB-PUB-090106-12	19101534	Martin, E.D., Moriarty, M.A., Byrnes, L., and Grealy, M.	Plakoglobin has both structural and signalling roles in zebrafish development	Developmental biology	2009	327(1)	83-96	
ZDB-PUB-090112-23	19133253	Ma, L.H., Webb, S.E., Chan, C.M., Zhang, J., and Miller, A.L.	Establishment of a transitory dorsal-biased window of localized Ca(2+) signaling in the superficial epithelium following the mid-blastula transition in zebrafish embryos	Developmental biology	2009	327(1)	143-157	
ZDB-PUB-090116-13	19135438	Kemp, H.A., Cooke, J.E., and Moens, C.B.	EphA4 and EfnB2a maintain rhombomere coherence by independently regulating intercalation of progenitor cells in the zebrafish neural keel	Developmental biology	2009	327(2)	313-326	
ZDB-PUB-090217-31	19210961	Nelson, S.M., Park, L., and Stenkamp, D.L.	Retinal homeobox 1 is required for retinal neurogenesis and photoreceptor differentiation in embryonic zebrafish	Developmental biology	2009	328(1)	24-39	
ZDB-PUB-090302-17	19236859	Row, R., and Kimelman, D.	Bmp inhibition is necessary for post-gastrulation patterning and morphogenesis of the zebrafish tailbud	Developmental biology	2009	329(1)	55-63	
ZDB-PUB-090302-8	19232521	Marques, S.R., and Yelon, D.	Differential requirement for BMP signaling in atrial and ventricular lineages establishes cardiac chamber proportionality	Developmental biology	2009	328(2)	472-482	
ZDB-PUB-090429-1	19389349	Zeng, X.X., Zheng, X., Xiang, Y., Cho, H.P., Jessen, J.R., Zhong, T.P., Solnica-Krezel, L., and Brown, H.A.	Phospholipase D1 is required for angiogenesis of intersegmental blood vessels in zebrafish	Developmental biology	2009	328(2)	363-376	
ZDB-PUB-090505-16	19409884	Lin, C.Y., Chen, W.T., Lee, H.C., Yang, P.H., Yang, H.J., and Tsai, H.J.	The transcription factor six1a plays an essential role in the craniofacial myogenesis of zebrafish	Developmental biology	2009	331(2)	152-166	
ZDB-PUB-090511-18	19422819	Winata, C.L., Korzh, S., Kondrychyn, I., Zheng, W., Korzh, V., and Gong, Z.	Development of zebrafish swimbladder: the requirement of Hedgehog signaling in specification and organization of the three tissue layers	Developmental biology	2009	331(2)	222-236	
ZDB-PUB-090518-1	19427304	Huang, W., Zhang, R., and Xu, X.	Myofibrillogenesis in the Developing Zebrafish Heart: A Functional Study of tnnt2	Developmental biology	2009	331(2)	237-249	
ZDB-PUB-090616-6	19481538	Yamauchi, H., Miyakawa, N., Miyake, A., and Itoh, N.	Fgf4 is required for left-right patterning of visceral organs in zebrafish	Developmental biology	2009	332(1)	177-185	
ZDB-PUB-090622-2	19527705	Curran, K., Raible, D.W., and Lister, J.A.	Foxd3 Controls Melanophore Specification in the Zebrafish Neural Crest by Regulation of Mitf	Developmental biology	2009	332(2)	408-417	
ZDB-PUB-090714-2	19576198	Olesnicky Killian, E.C., Birkholz, D.A., and Artinger, K.B.	A role for chemokine signaling in neural crest cell migration and craniofacial development	Developmental biology	2009	333(1)	161-172	
ZDB-PUB-090731-4	19632218	Green, J., Taylor, J.J., Hindes, A., Johnson, S.L., and Goldsmith, M.I.	A gain of function mutation causing skeletal overgrowth in the rapunzel mutant	Developmental biology	2009	334(1)	224-234	
ZDB-PUB-961014-1023	8293888	Sepich, D.S., Ho, R.K., and Westerfield, M.	Autonomous expression of the nic1 acetylcholine receptor mutation in zebrafish muscle cells	Developmental biology	1994	161	84-90	
ZDB-PUB-961014-1087	2909409	Streisinger, G., Coale, F., Taggart, C., Walker, C., and Grunwald, D.J.	Clonal origin of cells in the pigmented retina of the zebrafish eye	Developmental biology	1989	131	60-69	
ZDB-PUB-961014-1117	7589816	Thisse, C., Thisse, B., and Postlethwait, J.H.	Expression of snail2, a second member of the zebrafish Snail family, in cephalic mesendoderm and presumptive neural crest of wild-type and spadetail mutant embryos	Developmental biology	1995	172	86-99	
ZDB-PUB-961014-231	8608857	Dohrmann, C.E., Kessler, D.S., and Melton, D.A.	Induction of axial mesoderm by zDVR-1, the zebrafish orthologue of Xenopus Vg1	Developmental biology	1996	175	108-117	
ZDB-PUB-961014-30	7813774	Allende, M.L. and Weinberg, E.S.	The expression pattern of two zebrafish achaete-scute homolog (ash) genes is altered in the embryonic brain of the cyclops mutant	Developmental biology	1994	166	509-530	
ZDB-PUB-961014-36	7556889	Amsterdam, A., Lin, S., and Hopkins, N.	The Aequorea victoria green fluorescent protein can be used as a reporter in live zebrafish embryos	Developmental biology	1995	171	123-129	
ZDB-PUB-961014-377	3342929	Grunwald, D.J., Kimmel, C.B., Westerfield, M., Walker, C., and Streisinger, G.	A neural degeneration mutation that spares primary neurons in the zebrafish	Developmental biology	1988	126	115-128	
ZDB-PUB-961014-496	7851648	Johnson, S.L., Africa, D., Walker, C., and Weston, J.A.	Genetic control of adult pigment stripe development in zebrafish	Developmental biology	1995	167	27-33	
ZDB-PUB-961014-545	8330668	Kelly, G.M., Lai, C.J., and Moon, R.T.	Expression of wnt10a in the central nervous system of developing zebrafish	Developmental biology	1993	158	113-121	
ZDB-PUB-961014-585	3972183	Kimmel, C.B. and Law, R.D.	Cell lineage of zebrafish blastomeres. II. Formation of the yolk syncytial layer	Developmental biology	1985	108	86-93	
ZDB-PUB-961014-593	7095275	Kimmel, C.B., Powell, S.L., and Kimmel, R.J.	Specific reduction of development of the Mauthner neuron lateral dendrite after otic capsule ablation in Brachydanio rerio	Developmental biology	1982	91	468-473	
ZDB-PUB-961014-603	3666309	Kimmel, C.B. and Warga, R.M.	Indeterminate cell lineage of the zebrafish embryo	Developmental biology	1987	124	269-280	
ZDB-PUB-961014-703	8125186	Li, H.S., Yang, J.M., Jacobson, R.D., Pasko, D., and Sundin, O.	Pax-6 is first expressed in a region of ectoderm anterior to the early neural plate: implications for stepwise determination of the lens	Developmental biology	1994	162	181-194	
ZDB-PUB-961014-757	4076550	Mendelson, B.	Soma position is correlated with time of development in three types of identified reticulospinal neurons	Developmental biology	1985	112	489-493	
ZDB-PUB-961219-4	8903357	Riley, B.B. and Grunwald, D.J.	A mutation in zebrafish affecting a localized cellular function required for normal ear development	Developmental biology	1996	179(2)	427-435	
ZDB-PUB-970324-16	8954726	Beckers, J., Gerard, M., and Duboule, D.	Transgenic analysis of a potential Hoxd-11 limb regulatory element present in tetrapods and fish	Developmental biology	1996	180(2)	543-553	
ZDB-PUB-970326-2	9119115	Hug, B., Walter, V., and Grunwald, D.J.	tbx6, a brachyury-related gene expressed by ventral mesendodermal precursors in the zebrafish embryo	Developmental biology	1997	183(1)	61-73	
ZDB-PUB-970423-11	8806819	Taneja, R., Thisse, B., Rijli, F.M., Thisse, C., Bouillet, P., Dollé, P., and Chambon, P.	The expression pattern of the mouse receptor tyrosine kinase gene MDK1 is conserved through evolution and requires Hoxa-2 for rhombomere-specific expression in mouse embryos	Developmental biology	1996	177(2)	397-412	
ZDB-PUB-970602-19	9142986	Heisenberg, C.P. and Nüsslein-Volhard, C.	The function of silberblick in the positioning of the eye anlage in the zebrafish embryo	Developmental biology	1997	184(1)	85-94	
ZDB-PUB-980205-17	9441668	Higashijima, S., Okamoto, H., Ueno, N., Hotta, Y., and Eguchi, G.	High-frequency generation of transgenic zebrafish which reliably express GFP in whole muscles or the whole body by using promoters of zebrafish origin	Developmental biology	1997	192	289-299	
ZDB-PUB-980401-2	9501021	Hammerschmidt, M. and McMahon, A.P.	The effect of pertussis toxin on zebrafish development: a possible role for inhibitory G-proteins in hedgehog signaling	Developmental biology	1998	194	166-171	
ZDB-PUB-980701-14	9630750	Thompson, M.A., Ransom, D.G., Pratt, S.J., MacLennan, H., Kieran, M.W., Detrich,III, H.W., Vail, B., Huber, T.L., Paw, B., Brownlie, A.J., Oates, A.C., Fritz, A., Gates, MA., Amores, A., Bahary, N., Talbot, W.S., Her, H., Beier, D.R., Postlethwait, J.H., and Zon, L.I.	The cloche and spadetail genes differentially affect hematopoiesis and vasculogenesis	Developmental biology	1998	197	248-269	
ZDB-PUB-980723-5	9676195	Nguyen, V.H., Schmid, B., Trout, J., Connors, S.A., Ekker, M., and Mullins, M.C.	Ventral and lateral regions of the zebrafish gastrula, including the neural crest progenitors, are established by bmp2b/swirl pathway of genes	Developmental biology	1998	199	93-110	
ZDB-PUB-981208-29	9808788	Marlow, F., Zwartkruis, F., Malicki, J., Neuhauss, S.C.F., Abbas, L., Weaver, M., Driever, W., and Solnica-Krezel, L.	Functional interactions of genes mediating convergent extension, knypek and trilobite, during the partitioning of the eye primordium in zebrafish	Developmental biology	1998	203	382-399	
ZDB-PUB-990126-1	9918698	Mendonsa, E.S. and Riley, B.B.	Genetic analysis of tissue interactions required for otic placode induction in the zebrafish	Developmental biology	1999	206	100-112	
ZDB-PUB-990302-47	9986732	Martin, C.C., Laforest, L., Akimenko, M.-A., and Ekker, M.	A role for DNA methylation in gastrulation and somite patterning	Developmental biology	1999	206	189-205	
ZDB-PUB-990416-3	99208632	Wilson, S.	Nigel Holder (July 2, 1953-December 11, 1998)	Developmental biology	1999	208	253-254	
ZDB-PUB-990506-3	10328930	Ikegami, R., Hunter, P., and Yager, T.D.	Developmental activation of the capability to undergo checkpoint-induced apoptosis in the early zebrafish embryo	Developmental biology	1999	209	409-433	
ZDB-PUB-990607-10	10357891	Schilling, T.F., Concordet, J.-P., and Ingham, P.W.	Regulation of left-right asymmetries in the zebrafish by Shh and BMP4	Developmental biology	1999	210(2)	277-287	
ZDB-PUB-990628-19	10364427	Lele, Z., Hartson, S.D., Martin, C.C., Whitesell, L., Matts, R.L., and Krone, P.H.	Disruption of zebrafish somite development by pharmacologic inhibition of hsp90	Developmental biology	1999	210(1)	56-70	
ZDB-PUB-990708-11	10395784	Manzanares, M., Trainor, P.A., Nonchev, S., Ariza-McNaughton, L., Brodie, J., Gould, A., Marshall, H., Morrison, A., Kwan, C.-T., Sham, M.-H., Wilkinson, D.G., and Krumlauf, R.	The role of kreisler in segmentation during hindbrain development	Developmental biology	1999	211(2)	220-237	
ZDB-PUB-990823-17	10452858	Linney, E., Hardison, N.L., Lonze, B.E., Lyons, S., and DiNapoli, L.	Transgene expression in zebrafish: a comparison of retroviral-vector and DNA-injection approaches	Developmental biology	1999	213(1)	207-216	
ZDB-PUB-990913-1	10479444	Kodjabachian, L., Dawid, I.B., and Toyama, R.	Gastrulation in zebrafish: what mutants teach us	Developmental biology	1999	213(2)	231-245	
ZDB-PUB-990920-2	10491258	Miller-Bertoglio, V., Carmany-Rampey, A., Fürthauer, M., Gonzalez, E.M., Thisse, C., Thisse, B., Halpern, M.E., and Solnica-Krezel, L.	Maternal and zygotic activity of the zebrafish ogon locus antagonizes BMP signaling	Developmental biology	1999	214(1)	72-86	
ZDB-PUB-991102-10	10545230	Koos, D.S. and Ho, R.K.	The nieuwkoid/dharma homeobox gene is essential for bmp2b repression in the zebrafish pregastrula	Developmental biology	1999	215(2)	190-207	
ZDB-PUB-991209-2	10588859	Amatruda, J.F. and Zon, L.I.	Dissecting hematopoiesis and disease using the zebrafish	Developmental biology	1999	216(1)	1-15	
ZDB-PUB-091023-32	19818746	Lee, H.C., Tseng, W.A., Lo, F.Y., Liu, T.M., and Tsai, H.J.	FoxD5 mediates anterior-posterior polarity through upstream modulator Fgf signaling during zebrafish somitogenesis	Developmental biology	2009	336(2)	232-245	
ZDB-PUB-091120-28	19895802	Kague, E., Bessling, S.L., Lee, J., Hu, G., Passos-Bueno, M.R., and Fisher, S.	Functionally conserved cis-regulatory elements of COL18A1 identified through zebrafish transgenesis	Developmental biology	2010	337(2)	496-505	
ZDB-PUB-091120-30	19895804	Camarata, T., Krcmery, J., Snyder, D., Park, S., Topczewski, J., and Simon, H.G.	Pdlim7 (LMP4) regulation of Tbx5 specifies zebrafish heart atrio-ventricular boundary and valve formation	Developmental biology	2010	337(2)	233-245	
ZDB-PUB-091204-16	19931238	Hultman, K.A., and Johnson, S.L.	Differential contribution of direct-developing and stem cell-derived melanocytes to the zebrafish larval pigment pattern	Developmental biology	2010	337(2)	425-431	
ZDB-PUB-100105-36	20043901	Feng, Y., and Xu, Q.	Pivotal role of hmx2 and hmx3 in zebrafish inner ear and lateral line development	Developmental biology	2010	339(2)	507-518	
ZDB-PUB-100105-46	20045680	Degenhardt, K.R., Milewski, R.C., Padmanabhan, A., Miller, M., Singh, M.K., Lang, D., Engleka, K.A., Wu, M., Li, J., Zhou, D., Antonucci, N., Li, L., and Epstein, J.A.	Distinct enhancers at the Pax3 locus can function redundantly to regulate neural tube and neural crest expression	Developmental biology	2010	339(2)	519-527	
ZDB-PUB-100211-3	20122919	Gates, K.P., Mentzer, L., Karlstrom, R.O., and Sirotkin, H.I.	The transcriptional repressor REST/NRSF modulates hedgehog signaling	Developmental biology	2010	\ 	\ 	
ZDB-PUB-100211-7	20123093	Pillay, L.M., Forrester, A.M., Erickson, T., Berman, J.N., and Waskiewicz, A.J.	The Hox cofactors Meis1 and Pbx act upstream of gata1 to regulate primitive hematopoiesis	Developmental biology	2010	\ 	\ 	
ZDB-PUB-100211-30	20144602	Ishida, T., Nakajima, T., Kudo, A., and Kawakami, A.	Phosphorylation of Junb family proteins by the Jun N-terminal kinase supports tissue regeneration in zebrafish	Developmental biology	2010	\ 	\ 	
ZDB-PUB-961014-386	none	Hall, D. and Suboski, M.D.	Sensory preconditioning and second-order conditioning of alarm reactions in zebra danio fish (Brachydanio rerio)	J. Comp. Psychol.	1995	109	76-84	
ZDB-PUB-961014-1098	none	Suboski, M.D., Bain, S., Carty, A.E., McQuoid, L.M., Seelen, M.I., and Seifart, X.X.	Alarm reaction in acquisition and social transmission of simulated-predator recognition by zebra danio fish (Brachydanio rerio)	J. Comp. Psychol.	1990	104	101-112	
ZDB-PUB-050823-7	16109993	Bartlett, J.D., Dwyer, S.E., Beniash, E., Skobe, Z., and Payne-Ferreira, T.L.	Fluorosis: a new model and new insights	J. Dent. Res.	2005	84(9)	832-836	
ZDB-PUB-020107-2	11759004	Payne, T.L., Skobe, Z., and Yelick, P.C.	Regulation of tooth development by the novel type I TGFbeta family member receptor Alk8	J. Dent. Res.	2001	80(11)	1968-1973	
ZDB-PUB-961014-195	4031750	Dane, P.J. and Tucker, J.B.	Modulation of epidermal cell shaping and extracellular matrix during caudal fin morphogenesis in the zebra fish Brachydanio rerio	J. Embryol. Exp. Morphol.	1985	87	145-161	
ZDB-PUB-961014-733	5893770	Marrable, A.W.	Cell numbers during cleavage of the zebra fish egg	J. Embryol. Exp. Morphol.	1965	14(1)	15-24	
ZDB-PUB-961014-975		Sander, K., Dollmetsch, K., and Vollmar, H.	Zebrafish epiboly wheeling movement of deep cells at the blastodisc rim	J. Embryol. Exp. Morphol.	1984	82	214	
ZDB-PUB-961014-1124	5690450	Thomas, R.J.	Yolk distribution and utilization during early development of a teleost embryo (Brachydanio rerio)	J. Embryol. Exp. Morphol.	1968	19(2)	203-215	
ZDB-PUB-961014-1225	5656450	Weis, J.S.	Analysis of the development of the nervous system of the zebrafish Brachydanio rerio. I. The normal morphology and development of the spinal cord and ganglia of the zebrafish	J. Embryol. Exp. Morphol.	1968	19	109-119	
ZDB-PUB-961014-993	none	Schmatolla, E. and Erdmann, G.	Influence of retinotectal innervation on cell proliferation and cell migration in the embryonic teleost tectum	J. Embryol. Exp. Morphol.	1973	29	697-712	
ZDB-PUB-961014-1226	5656451	Weis, J.S.	Analysis of the development of the nervous system of the zebrafish Brachydanio rerio. II. The effect of nerve growth factor and its antiserum on the nervous system of the zebrafish	J. Embryol. Exp. Morphol.	1968	19	121-135	
ZDB-PUB-961014-194		Dane, P.J. and Tucker, J.B.	Tissue morphogenesis and cell-extracellular matrix interaction during teleost development	J. Embryol. Exp. Morphol.	1984	82	207	
ZDB-PUB-961014-991	5047841	Schmatolla, E.	Dependence of tectal neuron differentiation on optic innervation in teleost fish	J. Embryol. Exp. Morphol.	1972	27(3)	555-576	
ZDB-PUB-031204-16	14635912	Gemballa, S., Hagen, K., Roder, K., Rolf, M., and Treiber, K.	Structure and evolution of the horizontal septum in vertebrates	J. Evol. Biol.	2003	16(5)	966-975	
ZDB-PUB-961014-557		Khudoley, V.V.	Modifying influence of sulfanol on carcinogenesis induced by N-nitrosodiethylamine in pattern experiments on aquarium fish Danio rerio (H)	J. Exp. Clin. Cancer Res.	1984	3	353-357	
ZDB-PUB-050318-1	15580642	Schmidt, K., and Starck, J.M.	Developmental variability during early embryonic development of zebra fish, Danio rerio	J. Exp. Zoolog. B Mol. Dev. Evol.	2004	302(5)	446-457	
ZDB-PUB-060306-7	16496402	Fraser, G.J., Graham, A., and Smith, M.M.	Developmental and evolutionary origins of the vertebrate dentition: molecular controls for spatio-temporal organisation of tooth sites in osteichthyans	J. Exp. Zoolog. B Mol. Dev. Evol.	2006	306(3)	183-203	
ZDB-PUB-070629-20	17577202	Franz-Odendaal, T.A., Ryan, K., and Hall, B.K.	Developmental and morphological variation in the teleost craniofacial skeleton reveals an unusual mode of ossification	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308B(6)	709-721	
ZDB-PUB-070827-11	17708537	Jovelin, R., He, X., Amores, A., Yan, Y.L., Shi, R., Qin, B., Roe, B., Cresko, W.A., and Postlethwait, J.H.	Duplication and divergence of fgf8 functions in teleost development and evolution	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308B(6)	730-743	
ZDB-PUB-080326-11	18338789	Knight, R.D., Mebus, K., and Roehl, H.H.	Mandibular arch muscle identity is regulated by a conserved molecular process during vertebrate development	J. Exp. Zoolog. B Mol. Dev. Evol.	2008	310(4)	355-369	
ZDB-PUB-041004-4	15384168	Wang, W.C., Anand, S., Powell, D.R., Pawashe, A.B., Amemiya, C.T., and Shashikant, C.S.	Comparative cis-regulatory analyses identify new elements of the mouse Hoxc8 early enhancer	J. Exp. Zoolog. B Mol. Dev. Evol.	2004	302(5)	436-445	
ZDB-PUB-060531-5	16708366	Luo, J., Lang, M., Salzburger, W., Siegel, N., Stolting, K.N., and Meyer, A.	A BAC library for the goldfish Carassius auratus auratus (Cyprinidae, Cypriniformes)	J. Exp. Zoolog. B Mol. Dev. Evol.	2006	306(6)	567-574	
ZDB-PUB-061229-6	17171698	Luo, J., Stadler, P.F., He, S., and Meyer, A.	PCR survey of hox genes in the goldfish Carassius auratus auratus	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(3)	250-258	
ZDB-PUB-070330-5	17358015	Kimmel, C.B., Walker, M.B., and Miller, C.T.	Morphing the hyomandibular skeleton in development and evolution	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(5)	609-624	
ZDB-PUB-070813-29	17688262	Schilling, T.F., and Webb, J.	Considering the zebrafish in a comparative context	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(5)	515-522	
ZDB-PUB-070907-12	17724731	Hoffman, T.L., Javier, A.L., Campeau, S.A., Knight, R.D., and Schilling, T.F.	Tfap2 transcription factors in zebrafish neural crest development and ectodermal evolution	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(5)	679-691	
ZDB-PUB-081022-23	18850588	Davis, A., Scemama, J.L., and Stellwag, E.J.	Japanese medaka Hox paralog group 2: insights into the evolution of Hox PG2 gene composition and expression in the Osteichthyes	J. Exp. Zoolog. B Mol. Dev. Evol.	2008	310(8)	623-641	
ZDB-PUB-050701-11	15981199	Gao, S., Zhang, T., Zhou, X., Zhao, Y., Li, Q., Guo, Y., Cheng, H., and Zhou, R.	Molecular cloning, expression of Sox5 and its down-regulation of Dmrt1 transcription in Zebrafish	J. Exp. Zoolog. B Mol. Dev. Evol.	2005	304(5)	476-483	
ZDB-PUB-070330-4	17358013	Patricia Hernandez, L., Bird, N.C., and Staab, K.L.	Using zebrafish to investigate cypriniform evolutionary novelties: functional development and evolutionary diversification of the kinethmoid	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(5)	625-641	
ZDB-PUB-070711-15	17599725	Mabee, P.M., Arratia, G., Coburn, M., Haendel, M., Hilton, E.J., Lundberg, J.G., Mayden, R.L., Rios, N., and Westerfield, M.	Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(5)	655-668	
ZDB-PUB-070711-5	17592620	Kuan, Y.S., Gamse, J.T., Schreiber, A.M., and Halpern, M.E.	Selective asymmetry in a conserved forebrain to midbrain projection	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(5)	669-678	
ZDB-PUB-080527-29	17620302	Debiais-Thibaud, M., Borday-Birraux, V., Germon, I., Bourrat, F., Metcalfe, C.J., Casane, D., and Laurenti, P.	Development of oral and pharyngeal teeth in the medaka (Oryzias latipes): comparison of morphology and expression of eve1 gene	J. Exp. Zoolog. B Mol. Dev. Evol.	2007	308(6)	693-708	
ZDB-PUB-090505-3	19402133	Shao, J., Qian, X., Zhang, C., and Xu, Z.	Fin regeneration from tail segment with musculature, endoskeleton, and scales	J. Exp. Zoolog. B Mol. Dev. Evol.	2009	312(7)	762-769	
ZDB-PUB-090616-16	19488987	Nakada, C., Iida, A., Tabata, Y., and Watanabe, S.	Forkhead transcription factor foxe1 regulates chondrogenesis in zebrafish	J. Exp. Zoolog. B Mol. Dev. Evol.	2009	312(8)	827-840	
ZDB-PUB-090706-7	19562753	Jovelin, R., Yan, Y.L., He, X., Catchen, J., Amores, A., Canestro, C., Yokoi, H., and Postlethwait, J.H.	Evolution of developmental regulation in the vertebrate FgfD subfamily	J. Exp. Zoolog. B Mol. Dev. Evol.	2010	314(1)	33-56	
ZDB-PUB-030103-7	none	Chen, J.-Y., Yang, J.-Y., Wang, J.-I., and Wu, J.-L.	Introduction of green fluorescent protein and Lac-Z gene into zebrafish (Danio rerio) egg by microinjection and particle gun	J. Fish. Soc. Taiwan	2001	28(2)	91-103	
ZDB-PUB-041012-2	15472148	Gerhard, G.S., Malek, R.L., Keller, E., Murtha, J., and Cheng, K.C.	Zebrafish, Killifish, Neither Fish, Both Fish?	J. Gerontol. A. Biol. Sci. Med. Sci.	2004	59(9)	B873-B875	
ZDB-PUB-040309-1	14999022	Herrera, M., and Jagadeeswaran, P.	Annual fish as a genetic model for aging	J. Gerontol. A. Biol. Sci. Med. Sci.	2004	59(2)	B101-107	
ZDB-PUB-961014-907		Rahmann, H.	Autoradiographische Untersuchungen zum DNS-Stoffwechsel (Mitosehaufigkeit) im ZNS von Brachydanio rerio. Ham. Buch	J. Hirnforsch.	1968	10	279-284	
ZDB-PUB-070122-24	17208252	Palic, D., Andreasen, C.B., Ostojic, J., Tell, R.M., and Roth, J.A.	Zebrafish (Danio rerio) whole kidney assays to measure neutrophil extracellular trap release and degranulation of primary granules	J. Immunol. Methods	2007	319(1-2)	87-97	
ZDB-PUB-040908-19	15350517	Hermann, A.C., Millard, P.J., Blake, S.L.., and Kim, C.H.	Development of a respiratory burst assay using zebrafish kidneys and embryos	J. Immunol. Methods	2004	292(1-2)	119-129	
ZDB-PUB-090505-19	19410577	Deflorian, G., Cinquanta, M., Beretta, C., Venuto, A., Santoriello, C., Baldessari, D., Pezzimenti, F., Aliprandi, M., Mione, M., and de Marco, A.	Monoclonal antibodies isolated by large-scale screening are suitable for labeling adult zebrafish (Danio rerio) tissues and cell structures	J. Immunol. Methods	2009	346(1-2)	9-17	
ZDB-PUB-961014-212	none	Dehlin, E., Fjose, A., and VonGabain, A.	Dialog File 5: Biosis Previews 69-88/Sep BA8606;RRM3506 (C.BIOSIS 1988)	J. Interferon Res.	1988	7	716	
ZDB-PUB-020701-6	12067361	Hill, A.J., Howard, C.V., and Cossins, A.R.	Efficient embedding technique for preparing small specimens for stereological volume estimation: zebrafish larvae	J. Microsc.	2002	206(3)	179-181	
ZDB-PUB-090217-8	19196411	Emmenlauer, M., Ronneberger, O., Ponti, A., Schwarb, P., Griffa, A., Filippi, A., Nitschke, R., Driever, W., and Burkhardt, H.	XuvTools: free, fast and reliable stitching of large 3D datasets	J. Microsc.	2009	233(Pt 1)	42-60	
ZDB-PUB-090217-9	19196418	Kamali, M., Day, L.J., Brooks, D.H., Zhou, X., and O'Malley, D.M.	Automated identification of neurons in 3D confocal datasets from zebrafish brainstem	J. Microsc.	2009	233(Pt 1)	114-131	
ZDB-PUB-090929-2	19772538	Zhang, Y.L., Han, M.L., Vidyalakshmi, J., Shee, C.Y., and Ang, W.T.	Automatic control of mechanical forces acting on cell biomembranes using a vision-guided microrobotic system in computer microscopy	J. Microsc.	2009	236(1)	70-78	
ZDB-PUB-011025-1	11675603	van de Peer, Y., Taylor, J.S., Braasch, I., and Meyer, A.	The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes	J. Mol. Evol.	2001	53(4-5)	436-446	
ZDB-PUB-020904-2	12187388	Belle, E.M.S., Smith, N. and Eyre-Walker, A.	Analysis of the phylogenic distribution of isochores in vertebrates and a test of the thermal stability hypothesis	J. Mol. Evol.	2002	55(3)	356-363	
ZDB-PUB-040129-1	12612830	Merrit, T.J.S. and Quattro, M.	Evolution of the vertebrate cytosolic malate dehydrogenase gene family: duplication and divergence in actinopterygian fish	J. Mol. Evol.	2003	56(3)	265-276	
ZDB-PUB-041014-2	15486694	Imanishi, Y., Yang, L., Sokal, I., Filipek, S., Palczewski, K., and Baehr, W. 	Diversity of guanylate cyclase-activating proteins (GCAPs) in teleost fish: Characterization of three novel GCAPs (GCAP4, GCAP5, GCAP7) from zebrafish (Danio rerio) and prediction of eight GCAPs (GCAP1-8) in pufferfish (Fugu rubripes)	J. Mol. Evol.	2004	59(2)	204-217	
ZDB-PUB-050225-1	11965434	Li, Y.J., Tsoi, S.C., Mannen, H., and Shoei-lung Li, S.	Phylogenetic analysis of vertebrate lactate dehydrogenase (LDH) multigene families	J. Mol. Evol.	2002	54(5)	614-624	
ZDB-PUB-051012-5	16205980	Moghadam, H.K., Ferguson, M.M., and Danzmann, R.G.	Evolution of Hox Clusters in Salmonidae: A Comparative Analysis Between Atlantic Salmon (Salmo salar) and Rainbow Trout (Oncorhynchus mykiss)	J. Mol. Evol.	2005	61(5)	636-649	
ZDB-PUB-090921-25	19760447	Muthusamy, N., Ahmed, S.A., Rana, B.K., Navarre, S., Kozlowski, D.J., Liberles, D.A., and Bergson, C.	Phylogenetic Analysis of the NEEP21/Calcyon/P19 Family of Endocytic Proteins: Evidence for Functional Evolution in the Vertebrate CNS	J. Mol. Evol.	2009	69(4)	319-332	
ZDB-PUB-020128-2	11677629	Chen, Y.C., Kung, S.S., Chen, B.Y., Hung, C.C., Chen, C.C., Wang, T.Y., Wu, Y.M., Lin, W.H., Tzeng, C.S., and Chow, W.Y.	Identifications, classification, and evolution of the vertebrate alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid (AMPA) receptor subunit genes	J. Mol. Evol.	2001	53(6)	690-702	
ZDB-PUB-030115-30	12486526	Merritt, T.J. and Quattro, J.M.	Negative charge correlates with neural expression in vertebrate aldolase isozymes	J. Mol. Evol.	2002	55(6)	674-683	
ZDB-PUB-040127-1	14743318	Fredriksson, R., Larson E.T., Yan, Y.-L., Postlethwait, J.H., and Larhammar, D.	Novel neuropeptide Y Y2-like receptor subtype in zebrafish and frogs supports early vertebrate chromosome duplications	J. Mol. Evol.	2004	58(1)	106-114	
ZDB-PUB-050701-13	15983874	Wagner, G.P., Takahashi, K., Lynch, V., Prohaska, S.J., Fried, C., Stadler, P.F., and Amemiya, C.	Molecular Evolution of Duplicated Ray Finned Fish HoxA Clusters: Increased Synonymous Substitution Rate and Asymmetrical Co-divergence of Coding and Non-coding Sequences	J. Mol. Evol.	2005	60(5)	665-676	
ZDB-PUB-051207-2	14738308	Morvan-Dubois, G., Le Guellec, D., Garrone, R., Zylberberg, L., and Bonnaud, L.	Phylogenetic analysis of vertebrate fibrillar collagen locates the position of zebrafish alpha3(I) and suggests an evolutionary link between collagen alpha chains and hox clusters	J. Mol. Evol.	2003	57(5)	501-514	
ZDB-PUB-060822-1	16830092	Novak, A.E., Jost, M.C., Lu, Y., Taylor, A.D., Zakon, H.H., and Ribera, A.B.	Gene duplications and evolution of vertebrate voltage-gated sodium channels	J. Mol. Evol.	2006	63(2)	208-221	
ZDB-PUB-060825-20	16927008	Petit, D., Maftah, A., Julien, R., and Petit, J.M.	En Bloc Duplications, Mutation Rates, and Densities of Amino Acid Changes Clarify the Evolution of Vertebrate alpha-1,3/4-Fucosyltransferases	J. Mol. Evol.	2006	63(3)	353-364	
ZDB-PUB-090526-11	19449054	Wang, Y., Chen, K., Yao, Q., Zheng, X., and Yang, Z.	Phylogenetic Analysis of Zebrafish Basic Helix-Loop-Helix Transcription Factors	J. Mol. Evol.	2009	68(6)	629-640	
ZDB-PUB-970423-10	8660435	Arnault, F., Etienne, J., Noé, L., Raisonnier, A., Brault, D., Harney, J.W., Berry, M.J., Tse, C., Fromental-Ramain, C., Hamelin, J., and Galibert, F.	Human lipoprotein lipase last exon is not translated, in contrast to lower vertebrates	J. Mol. Evol.	1996	43(2)	109-115	
ZDB-PUB-990106-15	9873073	Izsvák, Z., Ivics, Z., Shimoda, N., Mohn, D., Okamoto, H., and Hackett, P.B.	Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification	J. Mol. Evol.	1999	48	13-21	
ZDB-PUB-091023-3	17917757	Fukamachi, S., and Meyer, A.	Evolution of receptors for growth hormone and somatolactin in fish and land vertebrates: lessons from the lungfish and sturgeon orthologues	J. Mol. Evol.	2007	65(4)	359-372	
ZDB-PUB-000816-1	10441677	Erber, A., Riemer, D., Hofemeister, H., Bovenschulte, M., Stick, R., Panopoulou, G., Lehrach, H., and Weber, K.	Characterization of the Hydra lamin and its gene: A molecular phylogeny of metazoan lamins	J. Mol. Evol.	1999	49(2)	260-271	
ZDB-PUB-001026-10	11040287	Shintani, S., Sato, A., Toyosawa, S., O'hUigin, C., and Klein, J.	Biglycan-like extracellular matrix genes of agnathans and teleosts	J. Mol. Evol.	2000	51(4)	363-373	
ZDB-PUB-020108-2	11734895	Hazkani-Covo, E., Altman, N., Horowitz, M., and Graur, D.	The evolutionary history of prosaposin: two successive tandem-duplication events gave rise to the four saposin domains in vertebrates	J. Mol. Evol.	2002	54(1)	30-34	
ZDB-PUB-020219-16	11847564	Jaso-Friedmann, L., Peterson, D.S., Gonzalez, D.S., and Evans, D.L.	The antigen receptor (NCCRP-1) on catfish and zebrafish nonspecific cytotoxic cells belongs to a new gene family characterized by an F-Box-Associated domain	J. Mol. Evol.	2002	54(3)	386-395	
ZDB-PUB-020219-3	11821916	Málaga-Trillo, E., Laessing, U., Lang, D.M., Meyer, A., and Stürmer, C.A.O.	Evolution of duplicated reggie genes in zebrafish and goldfish	J. Mol. Evol.	2002	54(2)	235-245	
ZDB-PUB-041018-5	15486693	Hoegg, S., Brinkmann, H., Taylor, J.S., and Meyer, A.	Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish	J. Mol. Evol.	2004	59(2)	190-203	
ZDB-PUB-050209-7	15693615	Danchin, E.G., and Pontarotti, P.	Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome	J. Mol. Evol.	2004	59(5)	587-597	
ZDB-PUB-071210-10	18046595	Meiniel, O., Meiniel, R., Lalloué, F., Didier, R., Jauberteau, M.O., Meiniel, A., and Petit, D.	The Lengthening of a Giant Protein: When, How, and Why?	J. Mol. Evol.	2008	66(1)	1-10	
ZDB-PUB-080218-31	15599511	Franck, E., Madsen, O., van Rheede, T., Ricard, G., Huynen, M.A., and de Jong, W.W.	Evolutionary diversity of vertebrate small heat shock proteins	J. Mol. Evol.	2004	59(6)	792-805	
ZDB-PUB-080228-1	18026683	Yuasa, H.J., Takubo, M., Takahashi, A., Hasegawa, T., Noma, H., and Suzuki, T.	Evolution of vertebrate indoleamine 2,3-dioxygenases	J. Mol. Evol.	2007	65(6)	705-714	
ZDB-PUB-080616-7	18535754	Wang, H.	Comparative Analysis of Period Genes in Teleost Fish Genomes	J. Mol. Evol.	2008	67(1)	29-40	
ZDB-PUB-970507-64	9089083	Peterson, R.E., Tu, C.K., and Linser, P.J.	Isolation and characterization of a carbonic anhydrase homologue from the zebrafish (Danio rerio)	J. Mol. Evol.	1997	44(4)	432-439	
ZDB-PUB-990607-17	9428164	Papendorf, O., König, G.M., Wright, A.D., Chorus, I., and Oberemm, A.	Mueggelone, a novel inhibitor of fish development from the fresh water cyanobacterium Aphanizomenon flos-aquae	J. Nat. Prod.	1997	60(12)	1298-1300	
ZDB-PUB-090519-1	19438253	Li, X.L., Li, Y., Wang, S.F., Zhao, Y.L., Liu, K.C., Wang, X.M., and Yang, Y.P.	Ingol and Ingenol Diterpenes from the Aerial Parts of Euphorbia royleana and Their Antiangiogenic Activities	J. Nat. Prod.	2009	72(6)	1001-1005	
ZDB-PUB-000622-11	10854246	Kurtzman, A.L., Gregori, L., Haas, A.L., Schechter, N.	Ubiquitination and degradation of the zebrafish paired-like homeobox protein VSX-1	J. Neurochem.	2000	75(1)	48-55	
ZDB-PUB-030728-9	12871584	Peitsaro, N., Kaslin, J., Anichtchik, O.V., and Panula, P.	Modulation of the histaminergic system and behaviour by alpha-fluoromethylhistidine in zebrafish	J. Neurochem.	2003	86(2)	432-441	
ZDB-PUB-050711-8	16000146	Ruuskanen, J.O., Peitsaro, N., Kaslin, J.V., Panula, P., and Scheinin, M.	Expression and function of alpha-adrenoceptors in zebrafish: drug effects, mRNA and receptor distributions	J. Neurochem.	2005	94(6)	1559-1569	
ZDB-PUB-080228-4	18266934	Severinsen, K., Sinning, S., Müller, H.K., and Wiborg, O.	Characterisation of the zebrafish serotonin transporter functionally links TM10 to the ligand binding site	J. Neurochem.	2008	105(5)	1794-1805	
ZDB-PUB-081203-32	19046410	Sallinen, V., Torkko, V., Sundvik, M., Reenilä, I., Khrustalyov, D., Kaslin, J., and Panula, P.	MPTP and MPP+ target specific aminergic cell populations in larval zebrafish	J. Neurochem.	2009	108(3)	719-731	
ZDB-PUB-090807-18	19656262	Yoshida, T., Uchida, S., and Mishina, M.	Regulation of synaptic vesicle accumulation and axon terminal remodeling during synapse formation by distinct Ca signaling	J. Neurochem.	2009	111(1)	160-170	
ZDB-PUB-000810-2	10899947	Peitsaro, N., Anichtchik, O.V., and Panula, P.	Identification of a histamine H3-like receptor in the zebrafish (Danio rerio) brain	J. Neurochem.	2000	75(2)	718-724	
ZDB-PUB-001003-4	10987827	Asch, W.S. and Schechter, N.	Plasticin, a type III neuronal intermediate filament protein, assembles as an obligate heteropolymer: Implications for axonal flexibility	J. Neurochem.	2000	75(4)	1475-1486	
ZDB-PUB-020708-5	12091460	Ringholm, A., Fredriksson, R., Poliakova, N., Yan, Y.-L., Postlethwait, J.H., Larhammar, D., and Schiöth, H.B.	One melanocortin 4 and two melanocortin 5 receptors from zebrafish show remarkable conservation in structure and pharmacology	J. Neurochem.	2002	82(1)	6-18	
ZDB-PUB-040109-31	14690532	Anichtchik, O.V., Kaslin, J., Peitsaro, N., Scheinin, M., and Panula, P.	Neurochemical and behavioural changes in zebrafish Danio rerio after systemic administration of 6-hydroxydopamine and 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine	J. Neurochem.	2004	88(2)	443-453	
ZDB-PUB-060210-19	16464238	Campbell, W.A., Yang, H., Zetterberg, H., Baulac, S., Sears, J.A., Liu, T., Wong, S.T., Zhong, T.P., and Xia, W.	Zebrafish lacking Alzheimer presenilin enhancer 2 (Pen-2) demonstrate excessive p53-dependent apoptosis and neuronal loss	J. Neurochem.	2006	96(5)	1423-1440	
ZDB-PUB-060825-3	16911583	Kanungo, J., Li, B.S., Zheng, Y., and Pant, H.C.	Cyclin-dependent kinase 5 influences Rohon-Beard neuron survival in zebrafish	J. Neurochem.	2006	99(1)	251-259	
ZDB-PUB-061227-43	17166173	Bretaud, S., Allen, C., Ingham, P.W., and Bandmann, O.	p53-dependent neuronal cell death in a DJ-1-deficient zebrafish model of Parkinson's disease	J. Neurochem.	2007	100(6)	1626-1635	
ZDB-PUB-070409-5	17394468	Hirschner, W., Pogoda, H.M., Kramer, C., Thiess, U., Hamprecht, B., Wiesmuller, K.H., Lautner, M., and Verleysdonk, S.	Biosynthesis of Wdr16, a marker protein for kinocilia-bearing cells, starts at the time of kinocilia formation in rat, and wdr16 gene knockdown causes hydrocephalus in zebrafish	J. Neurochem.	2007	101(1)	274-288	
ZDB-PUB-071129-1	18036148	Kojima, D., Torii, M., Fukada, Y., and Dowling, J.E.	Differential expression of duplicated VAL-opsin genes in the developing zebrafish	J. Neurochem.	2008	104(5)	1364-1371	
ZDB-PUB-980706-22	9648847	Asch, W.S., Leake, D., Canger, A.K., Passini, M.A., Argenton, F., and Schechter, N.	Cloning of zebrafish neurofilament cDNAs for Plasticin and Gefiltin: increased mRNA expression in ganglion cells after optic nerve injury	J. Neurochem.	1998	71	20-32	
ZDB-PUB-000824-29	10936170	Söderberg, C., Wraith, A., Ringvall, M., Yan, Y.-L., Postlethwait, J.H., Brodin, L., and Larhammar, D.	Zebrafish genes for neuropeptide Y and peptide YY reveal origin by chromosome duplication from an ancestral gene linked to the homeobox cluster	J. Neurochem.	2000	75(3)	908-918	
ZDB-PUB-001003-5	10987841	Boué-Grabot, E., Akimenko, M.A., and Séguéla, P.	Unique functional properties of a sensory neuronal P2X ATP-gated channel from zebrafish	J. Neurochem.	2000	75(4)	1600-1607	
ZDB-PUB-020513-2	11948255	Seo, H. Hong, S.J., Guo, S., Kim, H.S., Kim, C.H., Hwang, D.Y., Isacson, O., Rosenthal, A., and Kim, K.S.	A direct role of the homeodomain proteins Phox2a/2b in noradrenaline neurotransmitter identity determination	J. Neurochem.	2002	80(5)	905-916	
ZDB-PUB-060623-22	16787417	Wada, Y., Sugiyama, J., Okano, T., and Fukada, Y.	GRK1 and GRK7: Unique cellular distribution and widely different activities of opsin phosphorylation in the zebrafish rods and cones	J. Neurochem.	2006	98(3)	824-837	
ZDB-PUB-060816-15	16893422	Poirier, S., Prat, A., Marcinkiewicz, E., Paquin, J., Chitramuthu, B.P., Baranowski, D., Cadieux, B., Bennett, H.P., and Seidah, N.G.	Implication of the proprotein convertase NARC-1/PCSK9 in the development of the nervous system	J. Neurochem.	2006	98(3)	838-850	
ZDB-PUB-090227-6	19222706	Sallinen, V., Sundvik, M., Reenilä, I., Peitsaro, N., Khrustalyov, D., Anichtchik, O., Toleikyte, G., Kaslin, J., and Panula, P.	Hyperserotonergic phenotype after monoamine oxidase inhibition in larval zebrafish	J. Neurochem.	2009	109(2)	403-415	
ZDB-PUB-090828-9	19694906	Battista, A.G., Ricatti, M.J., Pafundo, D.E., Gautier, M.A., and Faillace, M.P.	Extracellular ADP regulates lesion-induced in vivo cell proliferation and death in the zebrafish retina	J. Neurochem.	2009	111(2)	600-613	
ZDB-PUB-990427-13	10098837	Ballestero, R.P., Dybowski, J.A., Levy, G., Agranoff, B.W., and Uhler, M.D.	Cloning and characterization of zRICH, a 2',3'-cyclic-nucleotide 3'-phosphodiesterase induced during zebrafish optic nerve regeneration	J. Neurochem.	1999	72(4)	1362-1371	
ZDB-PUB-050318-7	15763996	DeBruyne, J., Hurd, M.W., Gutierrez, L., Kaneko, M., Tan, Y., Wells, D.E., and Cahill, G.M.	Isolation and phenogenetics of a novel circadian rhythm mutant in zebrafish	J. Neurogenet.	2004	18(2)	403-428	
ZDB-PUB-080630-2	18569451	Tan, Y., DeBruyne, J., Cahill, G.M., and Wells, D.E.	Identification of a mutation in the Clock1 gene affecting zebrafish circadian rhythms	J. Neurogenet.	2008	22(2)	149-166	
ZDB-PUB-081203-26	19039707	Jesuthasan, S.J., and Mathuru, A.S.	The alarm response in zebrafish: innate fear in a vertebrate genetic model	J. Neurogenet.	2008	22(3)	211-228	
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ZDB-PUB-001130-4	11069940	Dermietzel, R., Kremer, M., Paputsoglu, G., Stang, A., Skerrett, I.M., Gomès, D., Srinivas, M., Janssen-Bienhold, U., Weiler, R., Nicholson, B.J., Bruzzone, R., and Spray, D.C.	Molecular and functional diversity of neural connexins in the retina	J. Neurosci.	2000	20(22)	8331-8343	
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ZDB-PUB-020220-15	11826114	Becker, C.G. and Becker, T.	Repellent guidance of regenerating optic axons by chondroitin sulfate glycosaminoglycans in zebrafish	J. Neurosci.	2002	22(3)	842-853	
ZDB-PUB-020807-13	12151528	Ono, F., Shcherbatko, A., Higashijima, S.-I., Mandel, G., and Brehm, P.	The zebrafish motility mutant twitch once reveals new roles for rapsyn in synaptic function.	J. Neurosci.	2002	22(15)	6491-6498	
ZDB-PUB-030115-32	12486166	Svoboda, K.R., Vijayaraghavan, S., and Tanguay, R.L.	Nicotinic receptors mediate changes in spinal motoneuron development and axonal pathfinding in embryonic zebrafish exposed to nicotine	J. Neurosci.	2002	22(24)	10731-10741	
ZDB-PUB-030210-3	12533607	Brockerhoff, S.E., Rieke, F., Matthews, H.R., Taylor, M.R., Kennedy, B., Ankoudinova, I., Niemi, G.A., Tucker, C.L., Xiao, M., Cilluffo, M.C., Fain, G.L., and Hurley, J.B.	Light stimulates a transducin-independent increase of cytoplasmic Ca2+ and suppression of current in cones from the zebrafish mutant nof	J. Neurosci.	2003	23(2)	470-480	
ZDB-PUB-030527-18	12736343	Roeser, T. and Baier, H.	Visuomotor behaviors in larval zebrafish after GFP-guided laser ablation of the optic tectum	J. Neurosci.	2003	23(9)	3726-3734	
ZDB-PUB-030707-3	12843251	Holzschuh, J., Hauptmann, G., and Driever, W.	Genetic analysis of the roles of Hh, FGF8, and nodal signaling during catecholaminergic system development in the zebrafish brain	J. Neurosci.	2003	23(13)	5507-5519	
ZDB-PUB-040304-11	14985445	Samad, T.A., Srinivasan, A., Karchewski, L.A., Jeong, S.J., Campagna, J.A., Ji, R.R., Fabrizio, D.A., Zhang, Y., Lin, H.Y., Bell, E., and Woolf, C.J.	DRAGON: a member of the repulsive guidance molecule-related family of neuronal- and muscle-expressed membrane proteins is regulated by DRG11 and has neuronal adhesive properties	J. Neurosci.	2004	24(8)	2027-2036	
ZDB-PUB-040319-1	15028760	Kaslin, J., Nystedt, J.M., Ostergard, M., Peitsaro, N., and Panula, P.	The orexin/hypocretin system in zebrafish is connected to the aminergic and cholinergic systems	J. Neurosci.	2004	24(11)	2678-2689	
ZDB-PUB-040623-4	15028754	Luo, W., Marsh-Armstrong, N., Rattner, A., and Nathans, J.	An outer segment localization signal at the C terminus of the photoreceptor-specific retinol dehydrogenase	J. Neurosci.	2004	24(11)	2623-2632	
ZDB-PUB-040625-12	15215305	Higashijima, S., Masino, M.A., Mandel, G., and Fetcho, J.R.	Engrailed-1 expression marks a primitive class of inhibitory spinal interneuron	J. Neurosci.	2004	24(25)	5827-5839	
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ZDB-PUB-050617-6	15958745	Li, J., Mack, J.A., Souren, M., Yaksi, E., Higashijima, S., Mione, M., Fetcho, J.R., and Friedrich, R.W.	Early development of functional spatial maps in the zebrafish olfactory bulb	J. Neurosci.	2005	25(24)	5784-95	
ZDB-PUB-050718-4	16014722	Cui, W.W., Low, S.E., Hirata, H., Saint-Amant, L., Geisler, R., Hume, R.I., and Kuwada, J.Y.	The zebrafish shocked gene encodes a glycine transporter and is essential for the function of early neural circuits in the CNS	J. Neurosci.	2005	25(28)	6610-6620	
ZDB-PUB-060403-10	16571769	Meyer, M.P., and Smith, S.J.	Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms	J. Neurosci.	2006	26(13)	3604-3614	
ZDB-PUB-060616-42	16763038	Fausett, B.V., and Goldman, D.	A role for alpha1 tubulin-expressing Muller glia in regeneration of the injured zebrafish retina	J. Neurosci.	2006	26(23)	6303-6313	
ZDB-PUB-060719-2	16822987	Koster, R.W., and Fraser, S.E.	FGF signaling mediates regeneration of the differentiating cerebellum through repatterning of the anterior hindbrain and reinitiation of neuronal migration	J. Neurosci.	2006	26(27)	7293-7304	
ZDB-PUB-061020-38	17035528	Bricaud, O., and Collazo, A.	The transcription factor six1 inhibits neuronal and promotes hair cell fate in the developing zebrafish (Danio rerio) inner ear	J. Neurosci.	2006	26(41)	10438-10451	
ZDB-PUB-061031-15	17065443	Carrel, T.L., McWhorter, M.L., Workman, E., Zhang, H., Wolstencroft, E.C., Lorson, C., Bassell, G.J., Burghes, A.H., and Beattie, C.E.	Survival motor neuron function in motor axons is independent of functions required for small nuclear ribonucleoprotein biogenesis	J. Neurosci.	2006	26(43)	11014-11022	
ZDB-PUB-070212-16	17267551	Chalasani, S.H., Sabol, A., Xu, H., Gyda, M.A., Rasband, K., Granato, M., Chien, C.B., and Raper, J.A.	Stromal cell-derived factor-1 antagonizes slit/robo signaling in vivo	J. Neurosci.	2007	27(5)	973-980	
ZDB-PUB-070513-8	17475806	Feldner, J., Reimer, M.M., Schweitzer, J., Wendik, B., Meyer, D., Becker, T., and Becker, C.G.	PlexinA3 restricts spinal exit points and branching of trunk motor nerves in embryonic zebrafish	J. Neurosci.	2007	27(18)	4978-4983	
ZDB-PUB-070711-9	17596452	Bernardos, R.L., Barthel, L.K., Meyers, J.R., and Raymond, P.A.	Late-stage neuronal progenitors in the retina are radial Müller glia that function as retinal stem cells	J. Neurosci.	2007	27(26)	7028-7040	
ZDB-PUB-071219-20	18077698	Stearns, G., Evangelista, M., Fadool, J.M., and Brockerhoff, S.E.	A mutation in the cone-specific pde6 gene causes rapid cone photoreceptor degeneration in zebrafish	J. Neurosci.	2007	27(50)	13866-13874	
ZDB-PUB-080102-3	18160645	Li, H., Lu, Y., Smith, H.K., and Richardson, W.D.	Olig1 and Sox10 interact synergistically to drive myelin basic protein transcription in oligodendrocytes	J. Neurosci.	2007	27(52)	14375-14382	
ZDB-PUB-080309-24	18305245	Obholzer, N., Wolfson, S., Trapani, J.G., Mo, W., Nechiporuk, A., Busch-Nentwich, E., Seiler, C., Sidi, S., Söllner, C., Duncan, R.N., Boehland, A., and Nicolson, T.	Vesicular glutamate transporter 3 is required for synaptic transmission in zebrafish hair cells	J. Neurosci.	2008	28(9)	2110-2118	
ZDB-PUB-080801-19	18667622	Nakaya, N., Lee, H.S., Takada, Y., Tzchori, I., and Tomarev, S.I.	Zebrafish olfactomedin 1 regulates retinal axon elongation in vivo and is a modulator of wnt signaling pathway	J. Neurosci.	2008	28(31)	7900-7910	
ZDB-PUB-080826-16	18701682	Anichtchik, O., Diekmann, H., Fleming, A., Roach, A., Goldsmith, P., and Rubinsztein, D.C.	Loss of PINK1 function affects development and results in neurodegeneration in zebrafish	J. Neurosci.	2008	28(33)	8199-8207	
ZDB-PUB-080826-35	18716202	Nagiel, A., Andor-Ardó, D., and Hudspeth, A.J.	Specificity of afferent synapses onto plane-polarized hair cells in the posterior lateral line of the zebrafish	J. Neurosci.	2008	28(34)	8442-8453	
ZDB-PUB-081008-3	18829968	Prober, D.A., Zimmerman, S., Myers, B.R., McDermott, B.M. Jr, Kim, S.H., Caron, S., Rihel, J., Solnica-Krezel, L., Julius, D., Hudspeth, A.J., and Schier, A.F.	Zebrafish TRPA1 channels are required for chemosensation but not for thermosensation or mechanosensory hair cell function	J. Neurosci.	2008	28(40)	10102-10110	
ZDB-PUB-081218-19	19074041	Zou, J., Lathrop, K.L., Sun, M., and Wei, X.	Intact retinal pigment epithelium maintained by Nok is essential for retinal epithelial polarity and cellular patterning in zebrafish	J. Neurosci.	2008	28(50)	13684-13695	
ZDB-PUB-090526-24	19458231	Munderloh, C., Solis, G.P., Bodrikov, V., Jaeger, F.A., Wiechers, M., Málaga-Trillo, E., and Stuermer, C.A.	Reggies/flotillins regulate retinal axon regeneration in the zebrafish optic nerve and differentiation of hippocampal and N2a neurons	J. Neurosci.	2009	29(20)	6607-6615	
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ZDB-PUB-091023-70	19846707	Paulus, J.D., Willer, G.B., Willer, J.R., Gregg, R.G., and Halloran, M.C.	Muscle contractions guide rohon-beard peripheral sensory axons	J. Neurosci.	2009	29(42)	13190-13201	
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ZDB-PUB-091120-48	19906973	Cao, L., Broomhead, H.E., Young, M.T., and North, R.A.	Polar residues in the second transmembrane domain of the rat P2X2 receptor that affect spontaneous gating, unitary conductance, and rectification	J. Neurosci.	2009	29(45)	14257-14264	
ZDB-PUB-091215-32	19955358	Reimer, M.M., Kuscha, V., Wyatt, C., Sörensen, I., Frank, R.E., Knüwer, M., Becker, T., and Becker, C.G.	Sonic hedgehog is a polarized signal for motor neuron regeneration in adult zebrafish	J. Neurosci.	2009	29(48)	15073-15082	
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ZDB-PUB-091215-34	19955371	Kucenas, S., Wang, W.D., Knapik, E.W., and Appel, B.	A selective glial barrier at motor axon exit points prevents oligodendrocyte migration from the spinal cord	J. Neurosci.	2009	29(48)	15187-15194	
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ZDB-PUB-000126-8	10627590	Legendre P., Ali, D.W., and Drapeau, P.	Recovery from open channel block by acetylcholine during neuromuscular transmission in zebrafish	J. Neurosci.	2000	20(1)	140-148	
ZDB-PUB-000202-9	10632600	Zerucha, T., Stuhmer, T., Hatch, G., Park, B.K., Long, Q., Yu, G., Gambarotta, A., Schultz, J.R., Rubenstein, J.L., and Ekker, M.	A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between dlx genes in the embryonic forebrain	J. Neurosci.	2000	20(2)	709-721	
ZDB-PUB-010404-6	11264308	Allwardt, B.A., Lall, A.B., Brockerhoff, S.E., and Dowling, J.E.	Synapse formation is arrested in retinal photoreceptors of the zebrafish nrc mutant	J. Neurosci.	2001	21(7)	2330-2342	
ZDB-PUB-010522-7	11331383	Gnuegge, L., Schmid, S., and Neuhauss, S.C.F.	Analysis of the activity-deprived zebrafish mutant macho reveals an essential requirement of neuronal activity for the development of a fine-grained visuotopic map	J. Neurosci.	2001	21(10)	3542-3548	
ZDB-PUB-011109-3	11698606	Ritter, D.A., Bhatt, D.H., and Fetcho, J.R.	In vivo imaging of zebrafish reveals differences in the spinal networks for escape and swimming movements	J. Neurosci.	2001	21(22)	8956-8965	
ZDB-PUB-020701-12	12077193	Yoshida, T., Ito, A., Matsuda, N., and Mishina, M.	Regulation by protein kinase A switching of axonal pathfinding of zebrafish olfactory sensory neurons through the olfactory placode-olfactory bulb boundary	J. Neurosci.	2002	22(12)	4964-4972	
ZDB-PUB-030527-3	12764107	Xiao, T., Shoji, W., Zhou, W., Su, F., and Kuwada, J.Y.	Transmembrane Sema4E guides branchiomotor axons to their targets in zebrafish	J. Neurosci.	2003	23(10)	4190-4198	
ZDB-PUB-030721-6	12867507	Becker, C.G., Schweitzer, J., Feldner, J., Becker, T., and Schachner, M.	Tenascin-R as a repellent guidance molecule for developing optic axons in zebrafish	J. Neurosci.	2003	23(15)	6232-6237	
ZDB-PUB-031204-24	14627630	Li, W., Ono, F., and Brehm, P.	Optical measurements of presynaptic release in mutant zebrafish lacking postsynaptic receptors	J. Neurosci.	2003	23(33)	10467-10474	
ZDB-PUB-040329-10	15044546	Hale, M.E., Kheirbek, M.A., Schriefer, J.E., and Prince, V.E.	Hox gene misexpression and cell-specific lesions reveal functionality of homeotically transformed neurons	J. Neurosci.	2004	24(12)	3070-3076	
ZDB-PUB-040402-2	15056699	Nakayama, H., and Oda, Y.	Common Sensory Inputs and Differential Excitability of Segmentally Homologous Reticulospinal Neurons in the Hindbrain	J. Neurosci.	2004	24(13)	3199-3209	
ZDB-PUB-040505-5	15115817	Sidi, S., Busch-Nentwich, E., Friedrich, R., Schoenberger, U., and Nicolson, T.	gemini encodes a zebrafish L-type calcium channel that localizes at sensory hair cell ribbon synapses	J. Neurosci.	2004	24(17)	4213-4223	
ZDB-PUB-040625-13	15215306	Li, W.C., Higashijima, S., Parry, D.M., Roberts, A., and Soffe, S.R.	Primitive roles for inhibitory interneurons in developing frog spinal cord	J. Neurosci.	2004	24(25)	5840-5848	
ZDB-PUB-040726-6	15269273	Tabor, R., Yaksi, E., Weislogel, J.M., and Friedrich, R.W.	Processing of odor mixtures in the zebrafish olfactory bulb	J. Neurosci.	2004	24(29)	6611-6620	
ZDB-PUB-040908-12	15342733	Senut, M.C., Gulati-Leekha, A., and Goldman, D.	An element in the alpha1-tubulin promoter is necessary for retinal expression during optic nerve regeneration but not after eye injury in the adult zebrafish	J. Neurosci.	2004	24(35)	7663-7673	
ZDB-PUB-041115-2	15537883	Luu, P., Acher, F., Bertrand, H.O., Fan, J., and Ngai, J.	Molecular determinants of ligand selectivity in a vertebrate odorant receptor	J. Neurosci.	2004	24(45)	10128-10137	
ZDB-PUB-050221-5	15716407	Li, Q., Shirabe, K., Thisse, C., Thisse, B., Okamoto, H., Masai, I., and Kuwada, J.Y.	Chemokine signaling guides axons within the retina in zebrafish	J. Neurosci.	2005	25(7)	1711-1717	
ZDB-PUB-050422-5	15843613	Vessey, J.P., Stratis, A.K., Daniels, B.A., Da Silva, N., Jonz, M.G., Lalonde, M.R., Baldridge, W.H., and Barnes, S.	Proton-mediated feedback inhibition of presynaptic calcium channels at the cone photoreceptor synapse	J. Neurosci.	2005	25(16)	4108-4117	
ZDB-PUB-050727-15	16033893	Park, H.C., Boyce, J., Shin, J., and Appel, B.	Oligodendrocyte specification in zebrafish requires notch-regulated cyclin-dependent kinase inhibitor function	J. Neurosci.	2005	25(29)	6836-6844	
ZDB-PUB-051012-11	16207874	Miller, V.M., Nelson, R.F., Gouvion, C.M., Williams, A., Rodriguez-Lebron, E., Harper, S.Q., Davidson, B.L., Rebagliati, M.R., and Paulson, H.L.	CHIP suppresses polyglutamine aggregation and toxicity in vitro and in vivo	J. Neurosci.	2005	25(40)	9152-9161	
ZDB-PUB-051114-10	16280593	Liu, Y., and Halloran, M.C.	Central and peripheral axon branches from one neuron are guided differentially by Semaphorin3D and transient axonal glycoprotein-1	J. Neurosci.	2005	25(45)	10556-10563	
ZDB-PUB-061010-8	17005851	Huang, Y.Y., Rinner, O., Hedinger, P., Liu, S.C., and Neuhauss, S.C.	Oculomotor instabilities in zebrafish mutant belladonna: a behavioral model for congenital nystagmus caused by axonal misrouting	J. Neurosci.	2006	26(39)	9873-9880	
ZDB-PUB-061229-17	17182783	Suli, A., Mortimer, N., Shepherd, I., and Chien, C.B.	Netrin/DCC signaling controls contralateral dendrites of octavolateralis efferent neurons	J. Neurosci.	2006	26(51)	13328-13337	
ZDB-PUB-070303-15	17301169	Sato, Y., Miyasaka, N., and Yoshihara, Y.	Hierarchical regulation of odorant receptor gene choice and subsequent axonal projection of olfactory sensory neurons in zebrafish	J. Neurosci.	2007	27(7)	1606-1615	
ZDB-PUB-070513-9	17475807	Burgess, H.A., and Granato, M.	Sensorimotor gating in larval zebrafish	J. Neurosci.	2007	27(18)	4984-4994	
ZDB-PUB-070924-5	17881520	Baye, L.M., and Link, B.A.	Interkinetic nuclear migration and the selection of neurogenic cell divisions during vertebrate retinogenesis	J. Neurosci.	2007	27(38)	10143-10152	
ZDB-PUB-071219-19	18077674	Kurrasch, D.M., Cheung, C.C., Lee, F.Y., Tran, P.V., Hata, K., and Ingraham, H.A.	The neonatal ventromedial hypothalamus transcriptome reveals novel markers with spatially distinct patterning	J. Neurosci.	2007	27(50)	13624-13634	
ZDB-PUB-080226-19	18234889	Fausett, B.V., Gumerson, J.D., and Goldman, D.	The proneural basic helix-loop-helix gene ascl1a is required for retina regeneration	J. Neurosci.	2008	28(5)	1109-1117	
ZDB-PUB-080309-25	18305259	Ma, E.Y., Rubel, E.W., and Raible, D.W.	Notch signaling regulates the extent of hair cell regeneration in the zebrafish lateral line	J. Neurosci.	2008	28(9)	2261-2273	
ZDB-PUB-080513-1	17804626	Wolman, M.A., Regnery, A.M., Becker, T., Becker, C.G., and Halloran, M.C.	Semaphorin3D regulates axon axon interactions by modulating levels of L1 cell adhesion molecule	J. Neurosci.	2007	27(36)	9653-9663	
ZDB-PUB-080519-6	18480279	Duggan, C.D., Demaria, S., Baudhuin, A., Stafford, D., and Ngai, J.	Foxg1 is required for development of the vertebrate olfactory system	J. Neurosci.	2008	28(20)	5229-5239	
ZDB-PUB-080826-17	18701683	Fleisch, V.C., Schonthaler, H.B., von Lintig, J., and Neuhauss, S.C.	Subfunctionalization of a retinoid-binding protein provides evidence for two parallel visual cycles in the cone-dominant zebrafish retina	J. Neurosci.	2008	28(33)	8208-8216	
ZDB-PUB-080826-36	18716209	Reimer, M.M., Sörensen, I., Kuscha, V., Frank, R.E., Liu, C., Becker, C.G., and Becker, T.	Motor neuron regeneration in adult zebrafish	J. Neurosci.	2008	28(34)	8510-8516	
ZDB-PUB-081121-25	19020043	Fein, A.J., Wright, M.A., Slat, E.A., Ribera, A.B., and Isom, L.L.	scn1bb, a Zebrafish Ortholog of SCN1B Expressed in Excitable and Nonexcitable Cells, Affects Motor Neuron Axon Morphology and Touch Sensitivity	J. Neurosci.	2008	28(47)	12510-12522	
ZDB-PUB-081203-25	19036991	Liao, J.C., and Fetcho, J.R.	Shared versus Specialized Glycinergic Spinal Interneurons in Axial Motor Circuits of Larval Zebrafish	J. Neurosci.	2008	28(48)	12982-12992	
ZDB-PUB-090310-10	19261871	Tanimoto, M., Ota, Y., Horikawa, K., and Oda, Y.	Auditory input to CNS is acquired coincidentally with development of inner ear after formation of functional afferent pathway in zebrafish	J. Neurosci.	2009	29(9)	2762-2767	
ZDB-PUB-090706-21	19571131	Peng, J., Wagle, M., Mueller, T., Mathur, P., Lockwood, B.L., Bretaud, S., and Guo, S.	Ethanol-modulated camouflage response screen in zebrafish uncovers a novel role for cAMP and extracellular signal-regulated kinase signaling in behavioral sensitivity to ethanol	J. Neurosci.	2009	29(26)	8408-8418	
ZDB-PUB-961014-1247	3746409	Westerfield, M., McMurray, J.V., and Eisen, J.S.	Identified motoneurons and their innervation of axial muscles in the zebrafish	J. Neurosci.	1986	6	2267-2277	
ZDB-PUB-961014-149	7722638	Burrill, J.D. and Easter, S.S. Jr.	The first retinal axons and their microenvironment in zebrafish: cryptic pioneers and the pretract	J. Neurosci.	1995	15	2935-2947	
ZDB-PUB-961014-373	7666180	Greenspoon, S., Patel, C.K., Hashmi, S., Bernhardt, R.R., and Kuwada, J.Y.	The notochord and floor plate guide growth cones in the zebrafish spinal cord	J. Neurosci.	1995	15	5956-5965	
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ZDB-PUB-091120-19	19890008	Woo, S., Rowan, D.J., and Gomez, T.M.	Retinotopic mapping requires focal adhesion kinase-mediated regulation of growth cone adhesion	J. Neurosci.	2009	29(44)	13981-13991	
ZDB-PUB-100315-1	19605629	Kastenhuber, E., Kern U., Bonkowsky, J.L., Chien, C.B., Driever, W., Schweitzer, J.	Netrin-DCC, Robo-Slit, and heparan sulfate proteoglycans coordinate lateral positioning of longitudinal dopaminergic diencephalospinal axons.	J. Neurosci.	2009	29	8914-8926	
ZDB-PUB-000126-9	10627598	Higashijima, S., Hotta, Y., and Okamoto, H.	Visualization of cranial motor neurons in live transgenic zebrafish expressing green fluorescent protein under the control of the islet-1 promoter/enhancer	J. Neurosci.	2000	20(1)	206-218	
ZDB-PUB-000309-35	10684890	Li, L. and Dowling, J.E.	Effects of dopamine depletion on visual sensitivity of zebrafish	J. Neurosci.	2000	20(5)	1893-903	
ZDB-PUB-000504-4	10751436	Kojima, D., Mano, H., and Fukada, Y.	Vertebrate ancient-long opsin: A green-sensitive photoreceptive molecule present in zebrafish deep brain and retinal horizontal cells	J. Neurosci.	2000	20(8)	2845-2851	
ZDB-PUB-001127-2	11050124	Petrausch, B., Tabibiazar, R., Roser, T., Jing, Y., Goldman, D., Stürmer, C.A., Irwin, N., and Benowitz, L.I.	A purine-sensitive pathway regulates multiple genes involved in axon regeneration in goldfish retinal ganglion cells	J. Neurosci.	2000	20(21)	8031-8041	
ZDB-PUB-010807-22	11466415	Ono, F., Higashijima, S., Shcherbatko, A., Fetcho, J.R., and Brehm, P.	Paralytic zebrafish lacking acetylcholine receptors fail to localize rapsyn clusters to the synapse	J. Neurosci.	2001	21(15)	5439-5448	
ZDB-PUB-011025-6	11606628	Fuss, S.H. and Korsching, S.I.	Odorant feature detection: activity mapping of structure response relationships in the zebrafish olfactory bulb	J. Neurosci.	2001	21(21)	8396-8407	
ZDB-PUB-020604-9	12019312	Takahashi, M., Narushima, M., and Oda, Y.	In vivo imaging of functional inhibitory networks on the mauthner cell of larval zebrafish	J. Neurosci.	2002	22(10)	3929-3938	
ZDB-PUB-021213-1	12451132	Tokuoka, H., Yoshida, T., Matsuda, N., and Mishina, M.	Regulation by glycogen synthase kinase-3beta of the arborization field and maturation of retinotectal projection in zebrafish	J. Neurosci.	2002	22(23)	10324-10332	
ZDB-PUB-030908-3	12954879	Liu, K.S., Gray, M., Otto, S.J., Fetcho, J.R., and Beattie, C.E.	Mutations in deadly seven/notch1a reveal developmental plasticity in the escape response circuit	J. Neurosci.	2003	23(22)	8159-8166	
ZDB-PUB-040621-3	15201319	Ono, F., Mandel, G., and Brehm, P.	Acetylcholine receptors direct rapsyn clusters to the neuromuscular synapse in zebrafish	J. Neurosci.	2004	24(24)	5475-5481	
ZDB-PUB-041008-12	15470129	Van Epps, H.A., Hayashi, M., Lucast, L., Stearns, G.W., Hurley, J.B., De Camilli, P., and Brockerhoff, S.E.	The Zebrafish nrc Mutant Reveals a Role for the Polyphosphoinositide Phosphatase Synaptojanin 1 in Cone Photoreceptor Ribbon Anchoring	J. Neurosci.	2004	24(40)	8641-8650	
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ZDB-PUB-050201-3	15673675	Wan, L., Almers, W., and Chen, W.	Two ribeye Genes in Teleosts: The Role of Ribeye in Ribbon Formation and Bipolar Cell Development	J. Neurosci.	2005	25(4)	941-949	
ZDB-PUB-050328-2	15788763	Yoshida, T., and Mishina, M.	Distinct roles of calcineurin-nuclear factor of activated T-cells and protein kinase A-cAMP response element-binding protein signaling in presynaptic differentiation	J. Neurosci.	2005	25(12)	3067-3079	
ZDB-PUB-050523-2	15901770	Sato, Y., Miyasaka, N., and Yoshihara, Y.	Mutually exclusive glomerular innervation by two distinct types of olfactory sensory neurons revealed in transgenic zebrafish	J. Neurosci.	2005	25(20)	4889-4897	
ZDB-PUB-050907-10	16135768	Wen, H., and Brehm, P.	Paired motor neuron-muscle recordings in zebrafish test the receptor blockade model for shaping synaptic current	J. Neurosci.	2005	25(35)	8104-8111	
ZDB-PUB-051012-12	16207889	Gahtan. E., Tanger. P., and Baier, H.	Visual prey capture in larval zebrafish is controlled by identified reticulospinal neurons downstream of the tectum	J. Neurosci.	2005	25(40)	9294-9303	
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ZDB-PUB-060124-24	16421313	Panzer, J.A., Song, Y., and Balice-Gordon, R.J.	In vivo imaging of preferential motor axon outgrowth to and synaptogenesis at prepatterned acetylcholine receptor clusters in embryonic zebrafish skeletal muscle	J. Neurosci.	2006	26(3)	934-947	
ZDB-PUB-060327-1	14724229	Liu, Y., Berndt, J., Su, F., Tawarayama, H., Shoji, W., Kuwada, J.Y., and Halloran, M.C.	Semaphorin3D guides retinal axons along the dorsoventral axis of the tectum	J. Neurosci.	2004	24(2)	310-318	
ZDB-PUB-060616-5	16723525	Kimura, Y., Okamura, Y., and Higashijima, S.	alx, a zebrafish homolog of Chx10, marks ipsilateral descending excitatory interneurons that participate in the regulation of spinal locomotor circuits	J. Neurosci.	2006	26(21)	5684-5697	
ZDB-PUB-061229-18	17182791	Prober, D.A., Rihel, J., Onah, A.A., Sung, R.J., and Schier, A.F.	Hypocretin/orexin overexpression induces an insomnia-like phenotype in zebrafish	J. Neurosci.	2006	26(51)	13400-13410	
ZDB-PUB-070303-16	17301179	Fimbel, S.M., Montgomery, J.E., Burket, C.T., and Hyde, D.R.	Regeneration of inner retinal neurons after intravitreal injection of ouabain in zebrafish	J. Neurosci.	2007	27(7)	1712-1724	
ZDB-PUB-070523-18	17507550	Sato, T., Hamaoka, T., Aizawa, H., Hosoya, T., and Okamoto, H.	Genetic single-cell mosaic analysis implicates ephrinB2 reverse signaling in projections from the posterior tectum to the hindbrain in zebrafish	J. Neurosci.	2007	27(20)	5271-5279	
ZDB-PUB-070614-10	17522303	Oike, H., Nagai, T., Furuyama, A., Okada, S., Aihara, Y., Ishimaru, Y., Marui, T., Matsumoto, I., Misaka, T., and Abe, K.	Characterization of ligands for fish taste receptors	J. Neurosci.	2007	27(21)	5584-5592	
ZDB-PUB-080309-15	18272680	Reynolds, A., Brustein, E., Liao, M., Mercado, A., Babilonia, E., Mount, D.B., and Drapeau, P.	Neurogenic role of the depolarizing chloride gradient revealed by global overexpression of KCC2 from the onset of development	J. Neurosci.	2008	28(7)	1588-1597	
ZDB-PUB-080520-1	15634773	Chen, J., Rattner, A., and Nathans, J.	The rod photoreceptor-specific nuclear receptor Nr2e3 represses transcription of multiple cone-specific genes	J. Neurosci.	2005	25(1)	118-129	
ZDB-PUB-080825-30	18685033	Lambert, F.M., Beck, J.C., Baker, R., and Straka, H.	Semicircular canal size determines the developmental onset of angular vestibuloocular reflexes in larval Xenopus	J. Neurosci.	2008	28(32)	8086-8095	
ZDB-PUB-080915-16	18784298	Liu, H., Wu, M.M., and Zakon, H.H.	A novel na+ channel splice form contributes to the regulation of an androgen-dependent social signal	J. Neurosci.	2008	28(37)	9173-9182	
ZDB-PUB-081022-27	18923040	Kohashi, T., and Oda, Y.	Initiation of mauthner- or non-mauthner-mediated fast escape evoked by different modes of sensory input	J. Neurosci.	2008	28(42)	10641-10653	
ZDB-PUB-081121-26	19020048	McGraw, H.F., Nechiporuk, A., and Raible, D.W.	Zebrafish Dorsal Root Ganglia Neural Precursor Cells Adopt a Glial Fate in the Absence of Neurogenin1	J. Neurosci.	2008	28(47)	12558-12569	
ZDB-PUB-081217-4	19052214	Epley, K.E., Urban, J.M., Ikenaga, T., and Ono, F.	A modified acetylcholine receptor delta-subunit enables a null mutant to survive beyond sexual maturation	J. Neurosci.	2008	28(49)	13223-13231	
ZDB-PUB-090217-4	19193881	Diekmann, H., Anichtchik, O., Fleming, A., Futter, M., Goldsmith, P., Roach, A., and Rubinsztein, D.C.	Decreased BDNF levels are a major contributor to the embryonic phenotype of huntingtin knockdown zebrafish	J. Neurosci.	2009	29(5)	1343-1349	
ZDB-PUB-090302-28	19244509	Zannino, D.A., and Appel, B.	Olig2+ precursors produce abducens motor neurons and oligodendrocytes in the zebrafish hindbrain	J. Neurosci.	2009	29(8)	2322-2333	
ZDB-PUB-090417-13	19369545	Miyasaka, N., Morimoto, K., Tsubokawa, T., Higashijima, S., Okamoto, H., and Yoshihara, Y.	From the olfactory bulb to higher brain centers: genetic visualization of secondary olfactory pathways in zebrafish	J. Neurosci.	2009	29(15)	4756-4767	
ZDB-PUB-090518-15	19439592	Kaslin, J., Ganz, J., Geffarth, M., Grandel, H., Hans, S., and Brand, M.	Stem cells in the adult zebrafish cerebellum: initiation and maintenance of a novel stem cell niche	J. Neurosci.	2009	29(19)	6142-6153	
ZDB-PUB-090526-23	19458229	Hendricks, M., and Jesuthasan, S.	PHR regulates growth cone pausing at intermediate targets through microtubule disassembly	J. Neurosci.	2009	29(20)	6593-6598	
ZDB-PUB-090828-3	19692613	Gabriel, J.P., Mahmood, R., Kyriakatos, A., Söll, I., Hauptmann, G., Calabrese, R.L., and El Manira, A.	Serotonergic modulation of locomotion in zebrafish: endogenous release and synaptic mechanisms	J. Neurosci.	2009	29(33)	10387-10395	
ZDB-PUB-090921-21	19759292	Yang, X., Zou, J., Hyde, D.R., Davidson, L.A., and Wei, X.	Stepwise maturation of apicobasal polarity of the neuroepithelium is essential for vertebrate neurulation	J. Neurosci.	2009	29(37)	11426-11440	
ZDB-PUB-961014-1079	2243597	Sterrer, S., Koenigstorfer, A., and Hoffmann, W.	Biosynthesis and expression of ependymin homologous sequences in zebrafish brain	J. Neurosci.	1990	37	277-284	
ZDB-PUB-961014-1095	2848935	Stürmer, C.A.O.	Retinotopic organization of the developing retinotectal projection in the zebrafish embryo	J. Neurosci.	1988	8	4513-4530	
ZDB-PUB-961014-167	2355256	Chitnis, A.B. and Kuwada, J.Y.	Axonogenesis in the brain of zebrafish embryos	J. Neurosci.	1990	10	1892-1905	
ZDB-PUB-961014-264	1992002	Eisen, J.S.	Developmental neurobiology of the zebrafish	J. Neurosci.	1991	11	311-317	
ZDB-PUB-961014-62	8283233	Baier, H. and Korsching, S.	Olfactory glomeruli in the zebrafish form an invariant pattern and are identifiable across animals	J. Neurosci.	1994	14	219-230	
ZDB-PUB-961014-715	1315852	Liu, D.W. and Westerfield, M.	Clustering of muscle acetylcholine receptors requires motoneurons in live embryos but not in cell culture	J. Neurosci.	1992	12	1859-1866	
ZDB-PUB-961014-832	8340805	Nirenberg, S. and Cepko, C.	Targeted ablation of diverse cell classes in the nervous system in vivo	J. Neurosci.	1993	13	3238-3251	
ZDB-PUB-961014-955	1371313	Ross, L.S., Parrett, T., and Easter, S.S. Jr.	Axonogenesis and morphogenesis in the embryonic zebrafish brain	J. Neurosci.	1992	12	467-482	
ZDB-PUB-970327-17	none	Pike, S.H. and Eisen, J.S.	Interactions between identified motoneurons in embryonic zebrafish are not required for normal motoneuron development	J. Neurosci.	1990	10	44-49	
ZDB-PUB-970616-1	9151740	Brockerhoff, S.E., Hurley, J.B., Niemi, G.A., and Dowling, J.E.	A new form of inherited red-blindness identified in zebrafish	J. Neurosci.	1997	17(11)	4236-4242	
ZDB-PUB-971013-1	9315900	Melançon, E., Liu, D.W.C., Westerfield, M., and Eisen, J.S.	Pathfinding by identified zebrafish motoneurons in the absence of muscle pioneers	J. Neurosci.	1997	17(20)	7796-7804	
ZDB-PUB-980421-6	9526003	Legendre, P.	A reluctant gating mode of glycine receptor channels determines the time course of inhibitory miniature synaptic events in zebrafish hindbrain neuron	J. Neurosci.	1998	18	2856-2870	
ZDB-PUB-981221-1	9822753	Friedrich, R.W. and Korsching, S.I.	Chemotopic, combinatorial, and noncombinatorial odorant representations in the olfactory bulb revealed using a voltage-sensitive axon tracer	J. Neurosci.	1998	18	9977-9988	
ZDB-PUB-091120-70	19923275	Voas, M.G., Glenn, T.D., Raphael, A.R., and Talbot, W.S.	Schwann Cells Inhibit Ectopic Clustering of Axonal Sodium Channels	J. Neurosci.	2009	29(46)	14408-14414	
ZDB-PUB-091221-9	20007473	Abdesselem, H., Shypitsyna, A., Solis, G.P., Bodrikov, V., and Stuermer, C.A.	No Nogo66- and NgR-mediated inhibition of regenerating axons in the zebrafish optic nerve	J. Neurosci.	2009	29(49)	15489-15498	
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ZDB-PUB-100302-10	20181601	Chaplin, N., Tendeng, C., and Wingate, R.J.	Absence of an external germinal layer in zebrafish and shark reveals a distinct, anamniote ground plan of cerebellum development	J. Neurosci.	2010	30(8)	3048-3057	
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ZDB-PUB-970102-2	7996251	Pannevis, M.C. and Earle, K.E.	Maintenance energy requirement of five popular species of ornamental fish	J. Nutr.	1994	(12 Suppl.) 124	2616S-2618S	
ZDB-PUB-040526-2	14609438	Wlodawer, A., Durell, S.R., Li, M., Oyama, H., Oda, K., and Dunn, B.M.	A model of tripeptidyl-peptidase I (CLN2), a ubiquitous and highly conserved member of the sedolisin family of serine-carboxyl peptidases	BMC Structural Biology	2003	3(1)	8	
ZDB-PUB-050523-3	15901806	Gonzalez-Nuñez, V., Arsequell, G., Szemenyei, E., Toth, G., Valencia, G., and Rodriguez, R.E.	Binding profile of the endogenous novel heptapeptide met-enkephalin-gly-tyr in zebrafish and rat brain	J. Pharmacol. Exp. Ther.	2005	314(2)	862-867	
ZDB-PUB-051012-10	16207834	Gonzalez-Nuñez, V., Barrallo, A., Traynor, J.R., and Rodriguez, R.E.	Characterization of Opioid-Binding Sites in Zebrafish Brain	J. Pharmacol. Exp. Ther.	2006	316(2)	900-904	
ZDB-PUB-060906-13	16940434	Pyriochou, A., Beis, D., Koika, V., Polytarchou, C., Papadimitriou, E., Zhou, Z., and Papapetropoulos, A.	Soluble guanylyl cyclase activation promotes angiogenesis	J. Pharmacol. Exp. Ther.	2006	319(2)	663-671	
ZDB-PUB-070614-1	17519386	Cheung, Y.F., Kan, Z., Garrett-Engele, P., Gall, I., Murdoch, H., Baillie, G.S., Camargo, L.M., Johnson, J.M., Houslay, M.D., and Castle, J.C.	PDE4B5, a novel, super-short, brain-specific cAMP phosphodiesterase-4 variant whose isoform-specifying N-terminal region is identical to that of cAMP phosphodiesterase-4D6 (PDE4D6)	J. Pharmacol. Exp. Ther.	2007	322(2)	600-609	
ZDB-PUB-961014-712	3253426	Liu, D.W. and Westerfield, M.	Function of identified motoneurones and co-ordination of primary and secondary motor systems during zebra fish swimming	J. Physiol. Lond.	1988	403	73-89	
ZDB-PUB-090413-9	19358809	Kah, O., Pellegrini, E., Mouriec, K., Diotel, N., Anglade, I., Vaillant, C., Thieulant, M.L., Tong, S.K., Brion, F., Chung, B.C., and Pakdel, F.	Oestrogens and neurogenesis: new functions for an old hormone. Lessons from the zebrafish	J. Soc. Biol.	2009	203(1)	29-38	
ZDB-PUB-040920-1	15368966	Dambly-Chaudiere, C.	Imaging the development of the zebrafish line	J. Soc. Biol.	2004	198(2)	153-155	
ZDB-PUB-020220-3	11850236	Tong, S.K., Chiang, E.F., Hsiao, P.H., and Chung, B.	Phylogeny, expression and enzyme activity of zebrafish cyp19 (P450 aromatase) genes	J. Steroid Biochem. Mol. Biol.	2001	79(1-5)	299-303	
ZDB-PUB-040701-2	15225747	Ciesielski, F., Rochel, N., Mitschler, A., Kouzmenko, A., and Moras, D.	Structural investigation of the ligand binding domain of the zebrafish VDR in complexes with 1alpha,25(OH)(2)D(3) and Gemini: purification, crystallization and preliminary X-ray diffraction analysis	J. Steroid Biochem. Mol. Biol.	2004	90	5-59	
ZDB-PUB-011214-2	11738553	Tchoudakova, A., Kishida, M., Wood, E., and Callard, G.V.	Promoter characteristics of two cyp19 genes differentially expressed in the brain and ovary of teleost fish	J. Steroid Biochem. Mol. Biol.	2001	78(5)	427-439	
ZDB-PUB-080414-13	18395439	Reschly, E.J., Ai, N., Welsh, W.J., Ekins, S., Hagey, L.R., and Krasowski, M.D.	Ligand specificity and evolution of liver X receptors	J. Steroid Biochem. Mol. Biol.	2008	110(1-2)	83-94	
ZDB-PUB-090225-6	16621513	Kanda, H., Okubo, T., Omori, N., Niihara, H., Matsumoto, N., Yamada, K., Yoshimoto, S., Ito, M., Yamashita, S., Shiba, T., and Takamatsu, N.	Transcriptional regulation of the rainbow trout CYP19a gene by FTZ-F1 homologue	J. Steroid Biochem. Mol. Biol.	2006	99(2-3)	85-92	
ZDB-PUB-020220-2	11850237	Callard, G.V., Tchoudakova, A.V., Kishida, M., and Wood, E.	Differential tissue distribution, developmental programming, estrogen regulation and promoter characteristics of cyp19 genes in teleost fish	J. Steroid Biochem. Mol. Biol.	2001	79(1-5)	305-314	
ZDB-PUB-070122-36	17218092	Ciesielski, F., Rochel, N., and Moras, D.	Adaptability of the Vitamin D nuclear receptor to the synthetic ligand Gemini: Remodelling the LBP with one side chain rotation	J. Steroid Biochem. Mol. Biol.	2007	103(3-5)	235-242	
ZDB-PUB-090225-7	9365215	Callard, G.V., and Tchoudakova, A.	Evolutionary and functional significance of two CYP19 genes differentially expressed in brain and ovary of goldfish	J. Steroid Biochem. Mol. Biol.	1997	61(3-6)	387-392	
ZDB-PUB-961014-550	none	Kessel, R.G., Beams, H.W., and Tung, H.N.	Structural variations and transformations in annulate lamellae development during oogenesis in the zebrafish, Brachydanio rerio	J. Submicrosc. Cytol.	1984	16	511-520	
ZDB-PUB-961014-556	3999185	Kessel, R.G., Tung, H.N., Roberts, R., and Beams, H.W.	The presence and distribution of gap junctions in the oocyte-follicle cell complex of the zebrafish, Brachydanio rerio	J. Submicrosc. Cytol.	1985	17	239-253	
ZDB-PUB-091221-3	20002541	Tournoij, E., Weber, G.J., Akkerman, J.W., de Groot, P.G., Zon, L.I., Moll, F.L., and Schulte-Merker, S.	Mlck1a is expressed in zebrafish thrombocytes and an essential component for thrombus formation	J. Thromb. Haemost.	2009	\ 	\ 	
ZDB-PUB-100302-7	20180901	Lang, M.R., Gihr, G., Gawaz, M.P., and Müller, I.I.	Haemostasis in Danio rerio - Is the zebrafish a useful model for platelet research?	J. Thromb. Haemost.	2010	\ 	\ 	
ZDB-PUB-021017-40	none	Biava, P.M., Bonsignorio, D., and Hoxha, M.	Cell proliferation curves of different human tumor lines after in vitro treatment with zebrafish embryonic extracts	J. Tumor Mark. Oncol.	2001	16(3)	195-202	
ZDB-PUB-021017-41	none	Biava, P., Monguzzi, A., Bonsignorio, D., Frosi, A., Sell, S., and Klavins, J.V.	Xenopus laevis embryos share antigens with zebrafish embryos and with human malignant neoplasms	J. Tumor Mark. Oncol.	2001	16(3)	203-206	
ZDB-PUB-040421-4	15096664	Wiederhold, M.L., Harrison, J.L., and Gao W.	A critical period for gravitational effects on otolith formation	J. Vestib. Res.	2003	13(4-6)	205-214	
ZDB-PUB-961014-804		Moyle, P.B. and Senanayake, F.R.	Resource partitioning among the fishes of rainforest streams in Sri-Lanka	J. Zool. (Lond.)	1984	202	195-224	
ZDB-PUB-020403-12	11923860	Astrofsky, K.M., Harper, C.M., Rogers, A.B., and Fox, J.G.	Diagnostic techniques for clinical investigation of laboratory zebrafish	Lab Anim. (NY)	2002	31(3)	41-45	
ZDB-PUB-061010-13	17008908	Craig, M.P., Gilday, S.D., and Hove, J.R.	Dose-dependent effects of chemical immobilization on the heart rate of embryonic zebrafish	Lab Anim. (NY)	2006	35(9)	41-47	
ZDB-PUB-020403-13	11923862	Courtland, S.	Recirculating systems for zebrafish	Lab Anim. (NY)	2002	31(3)	53-56	
ZDB-PUB-090727-13	19626019	Ruhl, N., McRobert, S.P., and Currie, W.J.	Shoaling preferences and the effects of sex ratio on spawning and aggression in small laboratory populations of zebrafish (Danio rerio)	Lab Anim. (NY)	2009	38(8)	264-269	
ZDB-PUB-020403-11	11923859	Matthews, M., Trevarrow, B., and Matthews, J.	A virtual tour of the guide for zebrafish users	Lab Anim. (NY)	2002	31(3)	34-40	
ZDB-PUB-010207-2	11200575	Astrofsky, K.M., Schrenzel, M.D., Bullis, R.A., Smolowitz, R.M., and Fox, J.G.	Diagnosis and management of atypical Mycobacterium spp. infections in established laboratory zebrafish (Brachydanio rerio) facilities	Lab. Anim. Sci.	2000	50(6)	666-672	
ZDB-PUB-010417-8	10987667	Meinelt, T., Schulz, C., Wirth, M., Kurzinger, H., and Steinberg, C.	Correlation of diets high in n-6 polyunsaturated fatty acids with high growth rate in zebrafish (Danio rerio)	Lab. Anim. Sci.	2000	50(1)	43-45	
ZDB-PUB-020730-5	12008713	Vaulina, E.N., Palmbakh, L.R., Antipov, V.V., Anikeeva, I.D., Kostina, L.N., Zharikova, G.G., and Kasatkina, T.B.	Biological investigations on the orbital station "Salyut-5"	Life Sci. Space Res.	1979	17	241-246	
ZDB-PUB-010426-1	10960127	Wang, W.D., Wu, J.C., Hsu, H.J., Kong, Z.L., and Hu, C.H.	Overexpression of a zebrafish ARNT2-like factor represses CYP1A transcription in ZLE cells	Mar. Biotechnol.	2000	2(4)	376-386	
ZDB-PUB-010718-16	none	Mudumana, S.P., Low, S., Kwang, J., and Gong, Z.Y.	Multiple tissue transformation in adult zebrafish by gene gun bombardment and muscular injection of naked DNA	Mar. Biotechnol.	2001	3(2)	119-125	
ZDB-PUB-010718-43		Imahara, J., Tokumoto, M., Nagahama, Y., Ishikawa, K., and Tokumoto, T.	Reconstitution of sperm nuclei of zebrafish (Danio rerio) in Xenopus egg extracts	Mar. Biotechnol.	2001	3(1)	53-37	
ZDB-PUB-010918-5	none	Hawkins, W.E., Clark, M.S., Shima, A., Walter, R.B., Winn, R.N., and Westerfield, M.	Four resource centers for fishes: specifies, stocks, and services	Mar. Biotechnol.	2001	3	S239-S248	
ZDB-PUB-021017-78	none	Cheng, R.S. and Wu, J.L.	Gene expression of insulin-like growth factor-I receptor and p53 suppressor during zebrafish (Danio rerio) embryogenesis	Mar. Biotechnol.	2002	4(3)	226-235	
ZDB-PUB-021018-1	none	Wang, T.-M., Chen, Y.-H., Liu, C.-F., and Tsai, H.-J.	Functional analysis of the proximal promoter regions of fish rhodopsin and myf-5 genes using transgenesis	Mar. Biotechnol.	2002	4(3)	247-255	
ZDB-PUB-030728-17	12876653	Ken, C.F., Lin, C.T., Shaw, J.F., and Wu, J.L.	Characterization of fish Cu/Zn-superoxide dismutase and its protection from oxidative stress	Mar. Biotechnol.	2003	5(2)	167-173	
ZDB-PUB-040216-8	14961274	Wan, H., He, J., Ju, B., Yan, T., Lam, T.J., and Gong, Z.	Generation of Two-color Transgenic Zebrafish Using the Green and Red Fluorescent Protein Reporter Genes gfp and rfp	Mar. Biotechnol.	2002	4(2)	146-54	
ZDB-PUB-050328-6	15791490	Lee, J.H., Son, M.Y., Yoon, M.Y., Choi, J.D., and Kim, Y.T.	Isolation and Characterization of Ornithine Decarboxylase Gene from Flounder (Paralichthys olivaceus)	Mar. Biotechnol.	2004	6(5)	453-462	
ZDB-PUB-050727-9	16027989	Yazawa, R., Hirono, I., and Aoki, T.	Characterization of Promoter Activities of Four Different Japanese Flounder Promoters in Transgenic Zebrafish	Mar. Biotechnol.	2005	7(6)	625-633	
ZDB-PUB-060313-4	16501876	Wu, Y., Zhang, G., Xiong, Q., Luo, F., Cui, C., Hu, W., Yu, Y., Su, J., Xu, A., and Zhu, Z.	Integration of Double-Fluorescence Expression Vectors into Zebrafish Genome for the Selection of Site-Directed Knockout/Knockin	Mar. Biotechnol.	2006	8(3)	304-311	
ZDB-PUB-060419-5	16614871	Ando, H., and Okamoto, H.	Efficient Transfection Strategy for the Spatiotemporal Control of Gene Expression in Zebrafish	Mar. Biotechnol.	2006	8(3)	295-303	
ZDB-PUB-061108-28	17089084	Alvarez, M.C., Bejar, J., Chen, S., and Hong, Y.	Fish ES Cells and Applications to Biotechnology	Mar. Biotechnol.	2007	9(2)	117-127	
ZDB-PUB-061222-2	10811950	Gibbs, P.D., and Schmale, M.C.	GFP as a Genetic Marker Scorable Throughout the Life Cycle of Transgenic Zebra Fish	Mar. Biotechnol.	2000	2(2)	107-125	
ZDB-PUB-070303-25	17308997	Ye, H.Q., Chen, S.L., Sha, Z.X., and Liu, Y.	Molecular Cloning and Expression Analysis of the Myostatin Gene in Sea Perch (Lateolabrax japonicus)	Mar. Biotechnol.	2007	9(2)	262-272	
ZDB-PUB-070806-29	17671813	Wang, S., Xu, P., Thorsen, J., Zhu, B., de Jong, P.J., Waldbieser, G., Kucuktas, H., and Liu, Z.	Characterization of a BAC Library from Channel Catfish Ictalurus punctatus: Indications of High Levels of Chromosomal Reshuffling Among Teleost Genomes	Mar. Biotechnol.	2007	9(6)	701-711	
ZDB-PUB-080218-19	18214611	Su, J., Zhu, Z., Wang, Y., Xiong, F., and Zou, J.	The Cytomegalovirus Promoter-Driven Short Hairpin RNA Constructs Mediate Effective RNA Interference in Zebrafish In Vivo	Mar. Biotechnol.	2008	10(3)	262-269	
ZDB-PUB-080506-4	18449602	Pan, X., Zhan, H., and Gong, Z.	Ornamental Expression of Red Fluorescent Protein in Transgenic Founders of White Skirt Tetra (Gymnocorymbus ternetzi)	Mar. Biotechnol.	2008	10(5)	497-501	
ZDB-PUB-090716-14	19590921	Zhan, H., and Gong, Z.	Delayed and Restricted Expression of UAS-Regulated GFP Gene in Early Transgenic Zebrafish Embryos by Using the GAL4/UAS System	Mar. Biotechnol.	2010	12(1)	1-7	
ZDB-PUB-091215-5	19936986	Hsu, C.C., Hou, M.F., Hong, J.R., Wu, J.L., and Her, G.M.	Inducible Male Infertility by Targeted Cell Ablation in Zebrafish Testis	Mar. Biotechnol.	2009	\ 	\ 	
ZDB-PUB-000622-12	10384002	Hamilton, L. and Wright, J.M.	Isolation of complementary DNAs coding for a receptor for activated C kinase (RACK) from zebrafish (Danio rerio) and tilapia (Oreochromis niloticus): constitutive tissue and developmental expression	Mar. Biotechnol.	1999	1	279-285	
ZDB-PUB-010918-3	none	Paul, T.A., Burns, J.C., Shike, H., Getchell, R., Bowser, P.R., Whitlock, K.E., and Casey, J.W.	Reporter gene expression in fish following cutaneous infection with pantropic retroviral vectors	Mar. Biotechnol.	2001	3	S81-S87	
ZDB-PUB-020123-9	none	Karlsson, J., von Hofsten, J., and Olsson, P.E.	Generating transparent zebrafish: A refined method to improve detection of gene expression during embryonic development	Mar. Biotechnol.	2001	3(6)	522-527	
ZDB-PUB-030728-15	12876657	Smith, D.G., Wilburn, C., and McCarthy, R.A.	Methoprene photolytic compounds disrupt zebrafish development, producing phenocopies of mutants in the sonic hedgehog signaling pathway	Mar. Biotechnol.	2003	5(2)	201-212	
ZDB-PUB-030730-1	12925919	Wagle, M. and Jesuthasan, S.	Baculovirus-mediated gene expression in zebrafish	Mar. Biotechnol.	2003	5(1)	58-63	
ZDB-PUB-040216-23	14961311	Morizot, D.C., Nairn, R.S., Simhambhatla, P., Della Coletta, L., Trono, D., Chovanec, L., Walter, R.B., and Kazianis, S.	Xiphophorus genetic linkage map: beginnings of comparative gene mapping in fishes	Mar. Biotechnol.	2001	(Suppl.1) 3	S153-61	
ZDB-PUB-040216-6	14961303	Paul, T.A., Burns, J.C., Shike, H., Getchell, R., Bowser, P.R., Whitlock, K.E., and  Casey, J.W.	Reporter gene expression in fish following cutaneous infection with pantropic retroviral vectors	Mar. Biotechnol.	2001	(Suppl.1) 3	S081-087	
ZDB-PUB-040216-9	14961228	Tan, X., Hoang, L., and Du, S.	Characterization of muscle-regulatory genes, myf5 and myogenin, from striped bass and promoter analysis of muscle-specific expression	Mar. Biotechnol.	2002	4(6)	537-545	
ZDB-PUB-040510-1	15129328	Hwang, G., Müller, F., Rahman, M.A., Williams, D.W., Murdock, P.J., Pasi, K.J., Goldspink, G., Farahmand, H., and Maclean, N.	Fish as Bioreactors: Transgene Expression of Human Coagulation Factor VII in Fish Embryos	Mar. Biotechnol.	2004	6(5)	485-492	
ZDB-PUB-040510-7	14961374	Mudumana, S.P., Low, S., Kwang, J., and Gong, Z. 	Multiple Tissue Transformation in Adult Zebrafish by Gene Gun Bombardment and Muscular Injection of Naked DNA	Mar. Biotechnol.	2001	3(2)	119-125	
ZDB-PUB-050510-1	15864470	Yazawa, R., Hirono, I., Ohira, T., and Aoki, T.	Induction of Japanese Flounder TNF Promoter Activity by Lipopolysaccharide in Zebrafish Embryo	Mar. Biotechnol.	2005	7(3)	231-235	
ZDB-PUB-060616-8	16729214	Liu, J., Sun, Y.H., Wang, N., Wang, Y.P., and Zhu, Z.Y.	Upstream Regulatory Region of Zebrafish lunatic fringe: Isolation and Promoter Analysis	Mar. Biotechnol.	2006	8(4)	357-365	
ZDB-PUB-060719-17	16832747	Zhang, Y.X., and Chen, S.L.	Molecular Identification, Polymorphism, and Expression Analysis of Major Histocompatibility Complex Class IIA and B Genes of Turbot (Scophthalmus maximus)	Mar. Biotechnol.	2006	8(6)	611-623	
ZDB-PUB-061227-13	17136469	Chen, S.L., Sha, Z.X., Ye, H.Q., Liu, Y., Tian, Y.S., Hong, Y., and Tang, Q.S.	Pluripotency and Chimera Competence of an Embryonic Stem Cell Line from the Sea Perch (Lateolabrax japonicus)	Mar. Biotechnol.	2007	9(1)	82-91	
ZDB-PUB-070523-11	17503154	Liu, W.Y., Wang, Y., Qin, Y., Wang, Y.P., and Zhu, Z.Y.	Site-Directed Gene Integration in Transgenic Zebrafish Mediated by Cre Recombinase Using a Combination of Mutant Lox Sites	Mar. Biotechnol.	2007	9(4)	420-428	
ZDB-PUB-080311-7	18322750	Su, J., Zhu, Z., Xiong, F., and Wang, Y.	Hybrid Cytomegalovirus-U6 Promoter-based Plasmid Vectors Improve Efficiency of RNA Interference in Zebrafish	Mar. Biotechnol.	2008	10(5)	511-517	
ZDB-PUB-080616-10	18537037	Kusik, B.W., Carvan Iii, M.J., and Udvadia, A.J.	Detection of Mercury in Aquatic Environments Using EPRE Reporter Zebrafish	Mar. Biotechnol.	2008	10(6)	750-757	
ZDB-PUB-081114-24	19005726	Wang, Y.H., Wen, C.C., Yang, Z.S., Cheng, C.C., Tsai, J.N., Ku, C.C., Wu, H.J., and Chen, Y.H.	Development of a Whole-organism Model to Screen New Compounds for Sun Protection	Mar. Biotechnol.	2009	11(3)	419-429	
ZDB-PUB-010718-42	none	Singh, N.N., Fischer, K., Hedstrom, O., and Barnes, D.W.	Fibroblast growth factor inhibits expression of neural markers in cultures of zebrafish early embryo cells	Mar. Biotechnol.	2001	3(1)	27-35	
ZDB-PUB-010918-4	none	Hahn, M.E.	Dioxin toxicology and the aryl hydrocarbon receptor: Insights from fish and other non-traditional models	Mar. Biotechnol.	2001	3	S224-S238	
ZDB-PUB-020805-2	10612680	Fahrenkrug, S.C., Clark, K., Dahlquist, M.O., and Hackett, P.B.	Dicistronic gene expression in developing zebrafish	Mar. Biotechnol.	1999	1(6)	552-561	
ZDB-PUB-030728-16	12876654	Cui, Z., Yang, Y., Kaufman, C.D., Agalliu, D., and Hackett, P.B.	RecA-mediated, targeted mutagenesis in zebrafish	Mar. Biotechnol.	2003	5(2)	174-184	
ZDB-PUB-031111-5	14605935	Chen, J.Y., Chen, J.C., Huang, W.T., Liu, C.W., Hui, C.F., Chen, T.T., and Wu, J.L.	Molecular cloning and tissue-specific, developmental-stage-specific, and hormonal regulation of IGFBP3 gene in zebrafish	Mar. Biotechnol.	2004	6(1)	1-7	
ZDB-PUB-040216-7	14961282	Lee, J.S., and Lee, Y.S	Cloning and Characterization of Replication Protein A p32 Complementary DNA in Zebrafish ( Danio rerio)	Mar. Biotechnol.	2002	4(1)	1-5	
ZDB-PUB-040510-2	15129327	Agaba, M., Tocher, D.R., Dickson, C.A., Dick, J.R., and Teale, A.J.	Zebrafish cDNA Encoding Multifunctional Fatty Acid Elongase Involved in Production of Eicosapentaenoic (20:5n-3) and Docosahexaenoic (22:6n-3) Acids	Mar. Biotechnol.	2004	6(3)	251-261	
ZDB-PUB-050607-11	15933901	Yamakoshi, K., Shishido, Y., and Shimoda, N.	Generation of Aberrant Transcripts of and Free DNA Ends in Zebrafish no tail Gene	Mar. Biotechnol.	2005	7(3)	163-172	
ZDB-PUB-050714-7	16007375	Hermann, A.C., and Kim, C.H.	Effects of Arsenic on Zebrafish Innate Immune System	Mar. Biotechnol.	2005	7(5)	494-505	
ZDB-PUB-050907-8	16132464	Abe, S., Wang, P.L., Takahashi, F., and Sasaki, E.	Structural Analysis of cDNAs Coding for 4SNc-Tudor Domain Protein from Fish and Their Expression in Yellowtail Organs	Mar. Biotechnol.	2005	7(6)	677-686	
ZDB-PUB-061227-14	17136489	Alimuddin, Yoshizaki, G., Kiron, V., Satoh, S., and Takeuchi, T.	Expression of Masu Salmon Delta5-Desaturase-Like Gene Elevated EPA and DHA Biosynthesis in Zebrafish	Mar. Biotechnol.	2007	9(1)	92-100	
ZDB-PUB-070625-9	17549562	Ken, C.F., Lin, C.T., Wen, Y.D., and Wu, J.L.	Replacement of Buried Cysteine from Zebrafish Cu/Zn Superoxide Dismutase and Enhancement of Its Stability via Site-Directed Mutagenesis	Mar. Biotechnol.	2007	9(3)	335-342	
ZDB-PUB-091215-4	19936833	Shirak, A., Grabherr, M., Di Palma, F., Lindblad-Toh, K., Hulata, G., Ron, M., Kocher, T.D., and Seroussi, E.	Identification of Repetitive Elements in the Genome of Oreochromis niloticus: Tilapia Repeat Masker	Mar. Biotechnol.	2009	\ 	\ 	
ZDB-PUB-091215-8	19941022	Hu, S.Y., Lin, P.Y., Liao, C.H., Gong, H.Y., Lin, G.H., Kawakami, K., and Wu, J.L.	Nitroreductase-mediated Gonadal Dysgenesis for Infertility Control of Genetically Modified Zebrafish	Mar. Biotechnol.	2009	\ 	\ 	
ZDB-PUB-100112-19	20052603	Zhan, H., Spitsbergen, J.M., Qing, W., Wu, Y.L., Paul, T.A., Casey, J.W., Her, G.M., and Gong, Z.	Transgenic Expression of Walleye Dermal Sarcoma Virus rv-cyclin Gene in Zebrafish and Its Suppressive Effect on Liver Tumor Development After Carcinogen Treatment	Mar. Biotechnol.	2010	\ 	\ 	
ZDB-PUB-040216-5	14961356	Yue, G.H., and Orban, L.	Rapid isolation of DNA from fresh and preserved fish scales for polymerase chain reaction	Mar.Biotechnol.	2001	3(3)	9-204	
ZDB-PUB-050124-1	14659595	Maaswinkel, H., Mason, B., and Li, L.	ENU-induced late-onset night blindness associated with rod photoreceptor cell degeneration in zebrafish	Mech. Ageing Dev.	2003	124(10-12)	1065-1071	
ZDB-PUB-050603-10	15922406	Maaswinkel, H., Riesbeck, L.E., Riley, M.E., Carr, A.L., Mullin, J.P., Nakamoto, A.T., and Li, L.	Behavioral screening for nightblindness mutants in zebrafish reveals three new loci that cause dominant photoreceptor cell degeneration	Mech. Ageing Dev.	2005	126(10)	1079-1089	
ZDB-PUB-961014-1157	none	VanNassauw, L., Meeussen, C., and Callebaut, M.	Immunohistochemical localization of desmin in the ovary of the teleost Brachydanio-rerio	Med. Sci. Res.	1988	16	1201-1202	
ZDB-PUB-990302-42	9891365	Malicki, J.	Development of the retina	Meth. Cell. Biol.	1999	59	273-299	
ZDB-PUB-030115-21	12507460	Yamamoto, Y. and Jeffery, W.R.	Probing teleost eye development by lens transplantation	Methods	2002	28(4)	420-426	
ZDB-PUB-050120-1	15649845	Krone, P.H., Blechinger, S.R., Evans, T.G., Ryan, J.A., Noonan, E.J., and Hightower, L.E.	Use of fish liver PLHC-1 cells and zebrafish embryos in cytotoxicity assays	Methods	2005	35(2)	176-187	
ZDB-PUB-060703-13	16806968	Allende, M.L., Manzanares, M., Tena, J.J., Feijoo, C.G., and Gomez-Skarmeta, J.L.	Cracking the genome's second code: Enhancer detection by combined phylogenetic footprinting and transgenic fish and frog embryos	Methods	2006	39(3)	212-219	
ZDB-PUB-060703-16	16809048	Ninkovic, J., and Bally-Cuif, L.	The zebrafish as a model system for assessing the reinforcing properties of drugs of abuse	Methods	2006	39(3)	262-274	
ZDB-PUB-060710-2	16814563	Kotani, T., Nagayoshi, S., Urasaki, A., and Kawakami, K.	Transposon-mediated gene trapping in zebrafish	Methods	2006	39(3)	199-206	
ZDB-PUB-060719-11	16828311	Sood, R., English, M.A., Jones, M., Mullikin, J., Wang, D.M., Anderson, M., Wu, D., Chandrasekharappa, S.C., Yu, J., Zhang, J., and Liu, P.P.	Methods for reverse genetic screening in zebrafish by resequencing and TILLING	Methods	2006	39(3)	220-227	
ZDB-PUB-060719-14	16829130	Carmany-Rampey, A., and Moens, C.B.	Modern mosaic analysis in the zebrafish	Methods	2006	39(3)	228-238	
ZDB-PUB-060719-9	16828309	Yang, Z., Jiang, H., Chachainasakul, T., Gong, S., Yang, X.W., Heintz, N., and Lin, S.	Modified bacterial artificial chromosomes for zebrafish transgenesis	Methods	2006	39(3)	183-188	
ZDB-PUB-060731-14	16870470	Sabaliauskas, N.A., Foutz, C.A., Mest, J.R., Budgeon, L.R., Sidor, AT, Gershenson, J.A., Joshi, S.B., and Cheng, K.C.	High-throughput zebrafish histology	Methods	2006	39(3)	246-254	
ZDB-PUB-060807-12	16887366	Laplante, M., Kikuta, H., Konig, M., and Becker, T.S.	Enhancer detection in the zebrafish using pseudotyped murine retroviruses	Methods	2006	39(3)	189-198	
ZDB-PUB-060807-5	16877005	Murphey, R.D., and Zon, L.I.	Small molecule screening in the zebrafish	Methods	2006	39(3)	255-261	
ZDB-PUB-090225-9	15588990	Andersen, J.N., Del Vecchio, R.L., Kannan, N., Gergel, J., Neuwald, A.F., and Tonks, N.K.	Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources	Methods	2005	35(1)	90-114	
ZDB-PUB-091023-54	19835787	Asakawa, K., and Kawakami, K.	The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish	Methods	2009	49(3)	275-281	
ZDB-PUB-030115-20	12507461	Malicki, J., Jo, H., Wei, X., Hsiung, M., and Pujic, Z.	Analysis of gene function in the zebrafish retina	Methods	2002	28(4)	427-438	
ZDB-PUB-030425-16	12695103	O'Malley, D.M., Zhou, Q., and Gahtan, E.	Probing neural circuits in the zebrafish: a suite of optical techniques	Methods	2003	30(1)	49-63	
ZDB-PUB-060724-3	16837210	Cerda, G.A., Thomas, J.E., Allende, M.L., Karlstrom, R.O., and Palma, V.	Electroporation of DNA, RNA, and morpholinos into zebrafish embryos	Methods	2006	39(3)	207-211	
ZDB-PUB-100211-6	20123023	Hunter, S.E., Jung, D., Di Giulio, R.T., and Meyer, J.N.	The QPCR assay for analysis of mitochondrial DNA damage, repair, and relative copy number	Methods	2010	\ 	\ 	
ZDB-PUB-030115-31	12486331	Andersen, S.S.L.	Preparation of dissociated zebrafish spinal neuron cultures	Methods Cell Sci.	2001	23(4)	205-209	
ZDB-PUB-961014-929	4857888	Reib, J.P.	An installation for time lapse microcinematography of teleost eggs with variable frame cycle	Micros. Acta.	1974	75(4)	338-345	
ZDB-PUB-050930-1	16172917	Friedberg, F.	Parvalbumin isoforms in zebrafish	Mol. Biol. Rep.	2005	32(3)	167-175	
ZDB-PUB-060710-8	16817020	Zhou, W., and Song, P.	Molecular Cloning of a Novel Gene ZAhi-1 and its Expression Analysis during Zebrafish Gametogenesis	Mol. Biol. Rep.	2006	33(2)	111-116	
ZDB-PUB-090714-9	19578977	Yang, Q., Hu, J., Ye, D., Zhao, C., Song, S., Gong, W., Tan, Z., and Song, P.	Identification and expression analysis of two zebrafish E2F5 genes during oogenesis and development	Mol. Biol. Rep.	2010	37(4)	1773-1780	
ZDB-PUB-030211-1	12549824	Friedberg, F. and Rhoads, A.R.	Multiple calmodulin genes in fish	Mol. Biol. Rep.	2002	29(4)	377-382	
ZDB-PUB-070303-7	17294249	Pei, D.S., Sun, Y.H., Long, Y., and Zhu, Z.Y.	Inhibition of no tail (ntl) gene expression in zebrafish by external guide sequence (EGS) technique	Mol. Biol. Rep.	2008	35(2)	139-143	
ZDB-PUB-071219-24	18080784	Kim, H.Y., Kim, G.Y., Kim, S.S., Nam, M.K., and Rhim, H.	Establishment of the expression system for studying the function of active caspase-3 in zebrafish	Mol. Biol. Rep.	2009	36(2)	405-413	
ZDB-PUB-090819-19	19688271	Xu, Y., Zou, P., Liu, Y., and Deng, F.	Discovery, characterization and expression of a novel zebrafish gene, znfr, important for notochord formation	Mol. Biol. Rep.	2009	\ 	\ 	
ZDB-PUB-090828-5	19693699	Zhou, Y., Xu, Y., Li, J., Liu, Y., Zhang, Z., and Deng, F.	Znrg, a novel gene expressed mainly in the developing notochord of zebrafish	Mol. Biol. Rep.	2009	\ 	\ 	
ZDB-PUB-050510-2	15865211	Friedberg, F., and Taliaferro, L	Calmodulin genes in zebrafish (revisited)	Mol. Biol. Rep.	2005	32(1)	55-60	
ZDB-PUB-080728-17	18654838	Pei, D.S., Sun, Y.H., and Zhu, Z.Y.	Identification of a novel gene K23 over-expressed in fish cross-subfamily cloned embryos	Mol. Biol. Rep.	2009	36(6)	1375-1380	
ZDB-PUB-090302-33	19247806	Zeng, M., Lu, Y., Liao, X., Li, D., Sun, H., Liang, S., Zhang, S., Ma, Y., and Yang, Z.	DAZL binds to 3'UTR of Tex19.1 mRNAs and regulates Tex19.1 expression	Mol. Biol. Rep.	2009	36(8)	2399-2403	
ZDB-PUB-090310-30	19266312	Yeh, H.Y., and Klesius, P.H.	Characterization and tissue expression of channel catfish (Ictalurus punctatus Rafinesque, 1818) ubiquitin carboxyl-terminal hydrolase L5 (UCHL5) cDNA	Mol. Biol. Rep.	2010	37(3)	1229-1234	
ZDB-PUB-021204-6	12443913	Pelster, B.	Developmental plasticity in the cardiovascular system of fish, with special reference to the zebrafish	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2002	133(3)	547-553	
ZDB-PUB-050623-5	15964229	Schwerte, T., Voigt, S., and Pelster, B.	Epigenetic variations in early cardiovascular performance and hematopoiesis can be explained by maternal and clutch effects in developing zebrafish (Danio rerio)	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2005	141(2)	200-209	
ZDB-PUB-050810-10	16085439	Bagatto B.	Ontogeny of cardiovascular control in zebrafish (Danio rerio): Effects of developmental environment	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2005	141(4)	391-400	
ZDB-PUB-061227-12	17134927	Evans, T.G., Belak, Z., Ovsenek, N., and Krone, P.H.	Heat shock factor 1 is required for constitutive Hsp70 expression and normal lens development in embryonic zebrafish	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2007	146(1)	131-140	
ZDB-PUB-080801-1	18655843	Westermann, B.A., and Meissl, H.	Nitric oxide synthase in photoreceptive pineal organs of fish	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2008	151(2)	198-204	
ZDB-PUB-081008-17	18838125	Tan, Q., Balofsky, A., Weisz, K., and Peng, C.	Role of activin, transforming growth factor-beta and bone morphogenetic protein 15 in regulating zebrafish oocyte maturation	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	153(1)	18-23	
ZDB-PUB-090105-10	19095074	Shin, J., and Sohn, Y.C.	cDNA cloning of Japanese flounder stanniocalcin 2 and its mRNA expression in a variety of tissues	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	153(1)	24-29	
ZDB-PUB-090716-5	19584002	Yaqoob, N., Holotta, M., Prem, C., Kopp, R., and Schwerte, T.	Ontogenetic development of erythropoiesis can be studied non-invasively in GATA-1:DsRed transgenic zebrafish	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	154(2)	270-278	
ZDB-PUB-090807-15	19654052	Biga, P.R., and Meyer, J.	Growth hormone differentially regulates growth and growth-related gene expression in closely related fish species	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	154(4)	465-473	
ZDB-PUB-961014-1160	1355027	van Raamsdonk, W., deGraaf, F., van Asselt, E., Diegenbach, P.C., Mos, W., van Noorden, C.J., Roberts, B.L., and Smit-Onel, M.J.	Metabolic profiles of spinal motoneurons in fish as established by quantitative enzyme histochemistry	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	1992	102	631-636	
ZDB-PUB-091204-20	19931635	Popovic, M., Zaja, R., and Smital, T.	Organic anion transporting polypeptides (OATP) in zebrafish (Danio rerio): Phylogenetic analysis and tissue distribution	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2010	155(3)	327-335	
ZDB-PUB-020912-23	12095854	Burggren, W. and Crossley, D.A., II	Comparative cardiovascular development: improving the conceptual framework	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2002	132(4)	661-674	
ZDB-PUB-050617-4	15958285	Pelster, B., Grillitsch, S., and Schwerte, T.	NO as a mediator during the early development of the cardiovascular system in the zebrafish	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2005	142(2)	215-220	
ZDB-PUB-060703-14	16807025	Huang, Y.S., Huang, W.L., Lin, W.F., Chen, M.C., and Jeng, S.R.	An endothelial-cell-enriched primary culture system to study vascular endothelial growth factor (VEGF A) expression in a teleost, the Japanese eel (Anguilla japonica)	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2006	145(1)	33-46	
ZDB-PUB-061227-3	17126580	Cutler, C.P., Martinez, A.S., and Cramb, G.	The role of aquaporin 3 in teleost fish	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2006	148(1)	82-91	
ZDB-PUB-080512-10	18467140	Keller, J.M., Escara-Wilke, J.F., and Keller, E.T.	Heat stress-induced heat shock protein 70 expression is dependent on ERK activation in zebrafish (Danio rerio) cells	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2008	150(3)	307-314	
ZDB-PUB-081203-14	19032987	Nguyen, N., and Zhu, Y.	Prolactin functions as a survival factor during zebrafish embryogenesis	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	153(1)	88-93	
ZDB-PUB-090828-18	19703578	Small, B.C., Quiniou, S.M., and Kaiya, H.	Sequence, genomic organization and expression of two channel catfish, Ictalurus punctatus, ghrelin receptors	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	154(4)	451-464	
ZDB-PUB-961014-203	none	Dave, G., Anderson, K., Berglind, R., and Hasselrot, B.	Toxicity of 8 solvent extract chemicals and of cadmium to water fleas, Daphnia magna, rainbow trout, Salmo gaidneri, and zebra fish, Brachydanio rerio	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	1981	69	83-98	
ZDB-PUB-091120-33	19896551	Saul, K.E., Koke, J.R., and García, D.M.	Activating transcription factor 3 (ATF3) expression in the neural retina and optic nerve of zebrafish during optic nerve regeneration	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2010	155(2)	172-182	
ZDB-PUB-100211-18	20138234	Cruz, S.A., Tseng, Y.C., Kaiya, H., Hwang, P.P., Cruz, S.A., Hwang, P.P., Kaiya, H., Tseng, Y.C., and Hwang, P.P.	Ghrelin affects carbohydrate-glycogen metabolism via insulin inhibition and glucagon stimulation in the zebrafish (Danio rerio) brain	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2010	\ 	\ 	
ZDB-PUB-100223-51	20170740	Eykelbosh, A.J., and Van Der Kraak, G.	A role for the lysosomal protease cathepsin B in zebrafish follicular apoptosis	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2010	\ 	\ 	
ZDB-PUB-030702-9	12814792	Airaksinen, S., Råbergh, C.M.I., Lahti, A., Kaatrasalo, A., Sistonen, L., and Nikinmaa, M.	Stressor-dependent regulation of the heat shock response in zebrafish, Danio rerio	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2003	134(4)	839-846	
ZDB-PUB-060210-10	16458555	Turesson, J., Schwerte, T., and Sundin, L.	Late onset of NMDA receptor-mediated ventilatory control during early development in zebrafish (Danio rerio)	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2006	143(3)	332-339	
ZDB-PUB-070122-11	17196857	Kopp, R., Pelster, B., and Schwerte, T.	How does blood cell concentration modulate cardiovascular parameters in developing zebrafish (Danio rerio)?	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2007	146(3)	400-407	
ZDB-PUB-080306-14	18289901	Santos, E.M., Kille, P., Workman, V.L., Paull, G.C., and Tyler, C.R.	Sexually dimorphic gene expression in the brains of mature zebrafish	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2008	149(3)	314-324	
ZDB-PUB-080922-5	18793741	Kaplan, J.E., Chrenek, R.D., Morash, J.G., Ruksznis, C.M., and Hannum, L.G.	Rhythmic patterns in phagocytosis and the production of reactive oxygen species by zebrafish leukocytes	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2008	151(4)	726-730	
ZDB-PUB-081029-15	18950725	Koskinen, J., Karlsson, J., and Olsson, P.E.	Sox9a regulation of ff1a in zebrafish (Danio rerio) suggests an involvement of ff1a in cartilage development	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	153(1)	39-43	
ZDB-PUB-081114-11	19000772	Tse, A.C., and Ge, W.	Differential regulation of betacellulin and heparin-binding EGF-like growth factor in cultured zebrafish ovarian follicle cells by EGF family ligands	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	153(1)	13-17	
ZDB-PUB-090526-34	19464383	Henry, T.B., McPherson, J.T., Rogers, E.D., Heah, T.P., Hawkins, S.A., Layton, A.C., and Sayler, G.S.	Changes in the relative expression pattern of multiple vitellogenin genes in adult male and larval zebrafish exposed to exogenous estrogens	Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology	2009	154(1)	119-126	
ZDB-PUB-060207-1	16442656	Konishi, T., Matsumoto, S., Tsuruwaka, Y., Shiraki, K., Hirata, K., Tamaru, Y., and Takagi, M.	Enhancing the tolerance of zebrafish (Danio rerio) to heavy metal toxicity by the expression of plant phytochelatin synthase	Journal of Biotechnology	2006	122(3)	316-325	
ZDB-PUB-060616-10	16730829	Seok, S.H., Park, J.H., Baek, M.W., Lee, H.Y., Kim, D.J., Uhm, H.M., Hong, J.J., Na, Y.R., Jin, B.H., Ryu, D.Y., and Park, J.H.	Specific activation of the human HSP70 promoter by copper sulfate in mosaic transgenic zebrafish	Journal of Biotechnology	2006	126(3)	406-413	
ZDB-PUB-050714-4	16005092	Acosta, J., Carpio, Y., Borroto, I., Gonzalez, O., Estrada, M.P.	Myostatin gene silenced by RNAi show a zebrafish giant phenotype	Journal of Biotechnology	2005	119(4)	324-331	
ZDB-PUB-070210-35	17254304	Christoffels, A., Bartfai, R., Srinivasan, H., Komen, H., and Orban, L.	Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome	BMC Bioinformatics	2006	7 Supple 5	S2	
ZDB-PUB-050718-2	16014168	Rouchka, E.C., Khalyfa, A., and Cooper, N.G.	MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays	BMC Bioinformatics	2005	6(175)		
ZDB-PUB-070806-3	17626621	Thomas-Chollier, M., Leyns, L., and Ledent, V.	HoxPred: automated classification of Hox proteins using combinations of generalised profiles	BMC Bioinformatics	2007	8(1)	247	
ZDB-PUB-080218-28	18215286	Zhou, L., Stanton, J., and Florea, L.	Universal seeds for cDNA-to-genome comparison	BMC Bioinformatics	2008	9	36	
ZDB-PUB-070122-33	17217512	Shi, W., and Zhou, W.	Frequency distribution of TATA Box and extension sequences on human promoters	BMC Bioinformatics	2006	7(S4)	S2	
ZDB-PUB-070504-15	17456238	Blanco, E., Guigo, R., and Messeguer, X.	Multiple Non-Collinear TF-map Alignments of Promoter Regions	BMC Bioinformatics	2007	8(1)	138	
ZDB-PUB-070924-3	17880681	Li, H., Guan, L., Liu, T., Guo, Y., Zheng, W.M., Wong, G.K., and Wang, J.	A cross-species alignment tool (CAT)	BMC Bioinformatics	2007	8(1)	349	
ZDB-PUB-080124-15	18179718	Knowlton, M.N., Li, T., Ren, Y., Bill, B.R., Ellis, L.B., and Ekker, S.C.	A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information	BMC Bioinformatics	2008	9(1)	7	
ZDB-PUB-050803-3	16047311	Yue, G.H., and Orban, L.	A simple and affordable method for high-throughput DNA extraction from animal tissues for polymerase chain reaction	Electrophoresis	2005	26(16)	3081-3083	
ZDB-PUB-050818-1	16089359	Lee, J.W., Na, D.S., Chae, S.K., Kim, C., Kang, J.Y., Ju, B.K., Lee, H., Kim, S.U., Hwang, C.N., and Lee, S.H.	Using the chorions of fertilized zebrafish eggs as a biomaterial for the attachment and differentiation of mouse stem cells	Langmuir	2005	21(17)	7615-7620	
ZDB-PUB-050823-1	16107211	Olsson, P.E., Berg, H., von Hofsten, J., Grahn, B., Hellqvist, A., Larsson, A., Karlsson, J., Modig, C,, Borg, B., and Thomas. P.	Molecular cloning and characterization of a nuclear androgen receptor activated by 11-ketotestosterone	Reproductive Biology and Endocrinolgy	2005	3	37	
ZDB-PUB-051214-19	16336677	Tokumoto, T., Tokumoto, M., and Nagahama, Y.	Induction and inhibition of oocyte maturation by EDCs in zebrafish	Reproductive Biology and Endocrinolgy	2005	3(1)	69	
ZDB-PUB-051005-3	16197550	Kohli, G., Clelland, E., and Peng, C.	Potential targets of transforming growth factor-beta1 during inhibition of oocyte maturation in zebrafish	Reproductive Biology and Endocrinolgy	2005	3	53	
ZDB-PUB-081203-2	19025614	Ishak, S.D., Tan, S.H., Khong, H.K., Jaya-Ram, A., Enyu, Y.L., Kuah, M.K., and Shu-Chien, A.C.	Upregulated mRNA expression of desaturase and elongase, two enzymes involved in highly unsaturated fatty acids biosynthesis pathways during follicle maturation in zebrafish	Reproductive Biology and Endocrinolgy	2008	6	56	
ZDB-PUB-080707-1	18590525	Jorgensen, A., Morthorst, J.E., Andersen, O., Juul Rasmussen, L., and Bjerregaard, P.	Expression profiles for six zebrafish genes during gonadal sex differentiation	Reproductive Biology and Endocrinolgy	2008	6	25	
ZDB-PUB-090921-3	19747405	Jorgensen, A., Nielsen, J.E., Morthorst, J.E., Bjerregaard, P., and Leffers, H.	Laser capture microdissection of gonads from juvenile zebrafish	Reproductive Biology and Endocrinolgy	2009	7	97	
ZDB-PUB-050831-3	16121254	Koudijs, M.J., den Broeder, M.J., Keijser, A., Wienholds, E., Houwing, S., van Rooijen, E.M., Geisler, R., and van Eeden, F.J.	The Zebrafish Mutants dre, uki, and lep Encode Negative Regulators of the Hedgehog Signaling Pathway	PLoS Genetics	2005	1(2)	e19	
ZDB-PUB-050907-6	16132083	Mathavan, S., Lee, S.G., Mak, A., Miller, L.D., Murthy, K.R., Govindarajan, K.R., Tong, Y., Wu, Y.L., Lam, S.H., Yang, H., Ruan, Y., Korzh, V., Gong, Z., Liu, E.T.,  and Lufkin, T.	Transcriptome analysis of zebrafish embryogenesis using microarrays	PLoS Genetics	2005	1(2)	e29	
ZDB-PUB-050930-6	16176122	Lahiri, K., Vallone, D., Gondi, S.B., Santoriello, C., Dickmeis, T., and Foulkes, N.S.	Temperature Regulates Transcription in the Zebrafish Circadian Clock	PLoS Genetics	2005	3(11)	e351	
ZDB-PUB-070828-2	17500592	Thomas, J.H.	Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates	PLoS Genetics	2007	3(5)	e67	
ZDB-PUB-071023-15	17937501	Jelen, N., Ule, J., Ivin, M., and Darnell, R.B.	Evolution of Nova-Dependent Splicing Regulation in the Brain	PLoS Genetics	2007	3(10)	1838-1847	
ZDB-PUB-071029-6	17953487	Shoval, Y., Pietrokovski, S., and Kimchi, A.	ZIPK: A Unique Case of Murine-Specific Divergence of a Conserved Vertebrate Gene	PLoS Genetics	2007	3(10)	e180	
ZDB-PUB-071029-9	17953490	Wingert, R.A., Selleck, R., Yu, J., Song, H.D., Chen, Z., Song, A., Zhou, Y., Thisse, B., Thisse, C., McMahon, A.P., and Davidson, A.J.	The cdx Genes and Retinoic Acid Control the Positioning and Segmentation of the Zebrafish Pronephros	PLoS Genetics	2007	3(10)	1922-1938	
ZDB-PUB-080102-1	18159945	Jopling, C., van Geemen, D., and den Hertog, J.	Shp2 Knockdown and Noonan/LEOPARD Mutant Shp2-Induced Gastrulation Defects	PLoS Genetics	2007	3(12)	e225	
ZDB-PUB-080227-4	18248098	Ozbudak, E.M., and Lewis, J.	Notch Signalling Synchronizes the Zebrafish Segmentation Clock but Is Not Needed To Create Somite Boundaries	PLoS Genetics	2008	4(2)	e15	
ZDB-PUB-080714-17	18618001	Lam, S.H., Mathavan, S., Tong, Y., Li, H., Karuturi, R.K., Wu, Y., Vega, V.B., Liu, E.T., and Gong, Z.	Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology	PLoS Genetics	2008	4(7)	e1000121	
ZDB-PUB-080801-21	18654634	Dokmanovic-Chouinard, M., Chung, W.K., Chevre, J.C., Watson, E., Yonan, J., Wiegand, B., Bromberg, Y., Wakae, N., Wright, C.V., Overton, J., Ghosh, S., Sathe, G.M., Ammala, C.E., Brown, K.K., Ito, R., LeDuc, C., Solomon, K., Fischer, S.G., and Leibel, R.L.	Positional cloning of "Lisch-Like", a candidate modifier of susceptibility to type 2 diabetes in mice	PLoS Genetics	2008	4(7)	e1000137	
ZDB-PUB-080826-21	18704191	Kishi, S., Bayliss, P.E., Uchiyama, J., Koshimizu, E., Qi, J., Nanjappa, P., Imamura, S., Islam, A., Neuberg, D., Amsterdam, A., and Roberts, T.M.	The identification of zebrafish mutants showing alterations in senescence-associated biomarkers	PLoS Genetics	2008	4(8)	e1000152	
ZDB-PUB-080908-13	18769712	Iwanami, N., Higuchi, T., Sasano, Y., Fujiwara, T., Hoa, V.Q., Okada, M., Talukder, S.R., Kunimatsu, S., Li, J., Saito, F., Bhattacharya, C., Matin, A., Sasaki, T., Shimizu, N., Mitani, H., Himmelbauer, H., Momoi, A., Kondoh, H., Furutani-Seiki, M., and Takahama, Y.	WDR55 Is a Nucleolar Modulator of Ribosomal RNA Synthesis, Cell Cycle Progression, and Teleost Organ Development	PLoS Genetics	2008	4(8)	e1000171	
ZDB-PUB-080908-16	18773071	Antonellis, A., Huynh, J.L., Lee-Lin, S.Q., Vinton, R.M., Renaud, G., Loftus, S.K., Elliot, G., Wolfsberg, T.G., Green, E.D., McCallion, A.S., and Pavan, W.J.	Identification of Neural Crest and Glial Enhancers at the Mouse Sox10 Locus through Transgenesis in Zebrafish	PLoS Genetics	2008	4(9)	e1000174	
ZDB-PUB-081121-9	19008952	Madsen, E.C., and Gitlin, J.D.	Zebrafish mutants calamity and catastrophe define critical pathways of gene-nutrient interactions in developmental copper metabolism	PLoS Genetics	2008	4(11)	e1000261	
ZDB-PUB-090105-13	19096706	Roux, J., and Robinson-Rechavi, M.	Developmental constraints on vertebrate genome evolution	PLoS Genetics	2008	4(12)	e1000311	
ZDB-PUB-070210-41	17257055	Hultman, K.A., Bahary, N., Zon, L.I., and Johnson, S.L.	Gene Duplication of the zebrafish kit ligand and partitioning of melanocyte development functions to kit ligand a	PLoS Genetics	2007	3(1)	e17	
ZDB-PUB-070614-15	17530925	Robu, M.E., Larson, J.D., Nasevicius, A., Beiraghi, S., Brenner, C., Farber, S.A., and Ekker, S.C.	p53 activation by knockdown technologies	PLoS Genetics	2007	3(5)	e78	
ZDB-PUB-070828-3	17069464	Rapkins, R.W., Hore, T., Smithwick, M., Ager, E., Pask, A.J., Renfree, M.B., Kohn, M., Hameister, H., Nicholls, R.D., Deakin, J.E., and Graves, J.A.	Recent assembly of an imprinted domain from non-imprinted components	PLoS Genetics	2006	2(10)	e182	
ZDB-PUB-071118-46	17997606	Bertrand, S., Thisse, B., Tavares, R., Sachs, L., Chaumot, A., Bardet, P.L., Escrivà, H., Duffraisse, M., Marchand, O., Safi, R., Thisse, C., and Laudet, V.	Unexpected Novel Relational Links Uncovered by Extensive Developmental Profiling of Nuclear Receptor Expression	PLoS Genetics	2007	3(11)	e188	
ZDB-PUB-080306-6	18282108	Kleinjan, D.A., Bancewicz, R.M., Gautier, P., Dahm, R., Schonthaler, H.B., Damante, G., Seawright, A., Hever, A.M., Yeyati, P.L., van Heyningen, V., and Coutinho, P.	Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence	PLoS Genetics	2008	4(2)	e29	
ZDB-PUB-080331-9	18369445	Lopes, S.S., Yang, X., Müller, J., Carney, T.J., McAdow, A.R., Rauch, G.J., Jacoby, A.S., Hurst, L.D., Delfino-Machín, M., Haffter, P., Geisler, R., Johnson, S.L., Ward, A., and Kelsh, R.N.	Leukocyte tyrosine kinase functions in pigment cell development	PLoS Genetics	2008	4(3)	e1000026	
ZDB-PUB-080610-11	18516225	Bussmann, J., Lawson, N., Zon, L., Schulte-Merker, S., and Zebrafish Nomenclature Committee.	Zebrafish VEGF receptors: a guideline to nomenclature	PLoS Genetics	2008	4(5)	e1000064	
ZDB-PUB-080728-16	18654627	Clément, A., Wiweger, M., von der Hardt, S., Rusch, M.A., Selleck, S.B., Chien, C.B., and Roehl, H.H.	Regulation of zebrafish skeletogenesis by ext2/dackel and papst1/pinscher	PLoS Genetics	2008	4(7)	e1000136	
ZDB-PUB-081008-12	18833299	Harris, M.P., Rohner, N., Schwarz, H., Perathoner, S., Konstantinidis, P., and Nüsslein-Volhard, C.	Zebrafish eda and edar mutants reveal conserved and ancestral roles of ectodysplasin signaling in vertebrates	PLoS Genetics	2008	4(10)	e1000206	
ZDB-PUB-081105-5	18974873	Davuluri, G., Gong, W., Yusuff, S., Lorent, K., Muthumani, M., Dolan, A.C., and Pack, M.	Mutation of the zebrafish nucleoporin elys sensitizes tissue progenitors to replication stress	PLoS Genetics	2008	4(10)	e1000240	
ZDB-PUB-090217-11	19197356	Yang, J., Chan, C.Y., Jiang, B., Yu, X., Zhu, G.Z., Chen, Y., Barnard, J., and Mei, W.	hnRNP I Inhibits Notch Signaling and Regulates Intestinal Epithelial Homeostasis in the Zebrafish	PLoS Genetics	2009	5(2)	e1000363	
ZDB-PUB-090319-2	19282986	Holloway, B.A., Gomez de la Torre Canny, S., Ye, Y., Slusarski, D.C., Freisinger, C.M., Dosch, R., Chou, M.M., Wagner, D.S., and Mullins, M.C.	A novel role for MAPKAPK2 in morphogenesis during zebrafish development	PLoS Genetics	2009	5(3)	e1000413	
ZDB-PUB-090429-5	19390601	Suzuki, J., Yamaguchi, K., Kajikawa, M., Ichiyanagi, K., Adachi, N., Koyama, H., Takeda, S., and Okada, N.	Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition	PLoS Genetics	2009	5(4)	e1000461	
ZDB-PUB-090714-7	19578401	Hultman, K.A., Budi, E.H., Teasley, D.C., Gottlieb, A.Y., Parichy, D.M., and Johnson, S.L.	Defects in ErbB-dependent establishment of adult melanocyte stem cells reveal independent origins for embryonic and regeneration melanocytes	PLoS Genetics	2009	5(7)	e1000544	
ZDB-PUB-090720-6	19609345	Slanchev, K., Carney, T.J., Stemmler, M.P., Koschorz, B., Amsterdam, A., Schwarz, H., and Hammerschmidt, M.	The epithelial cell adhesion molecule EpCAM is required for epithelial morphogenesis and integrity during zebrafish epiboly and skin development	PLoS Genetics	2009	5(7)	e1000563	
ZDB-PUB-091221-15	20011110	McEwen, G.K., Goode, D.K., Parker, H.J., Woolfe, A., Callaway, H., and Elgar, G.	Early evolution of conserved regulatory sequences associated with development in vertebrates	PLoS Genetics	2009	5(12)	e1000762	
ZDB-PUB-051207-7	16311625	Muto, A., Orger, M.B., Wehman, A.M., Smear, M.C., Kay, J.N., Page-McCaw, P.S., Gahtan, E., Xiao, T., Nevin, L.M., Gosse, N.J., Staub, W., Finger-Baier, K., Baier, H.	Forward Genetic Analysis of Visual Behavior in Zebrafish	PLoS Genetics	2005	1(5)	e66	
ZDB-PUB-061116-8	17096595	Balciunas, D., Wangensteen, K.J., Wilber, A., Bell, J., Geurts, A., Sivasubbu, S., Wang, X., Hackett, P.B., Largaespada, D.A., McIvor, R.S., and Ekker, S.C.	Harnessing a High Cargo-Capacity Transposon for Genetic Applications in Vertebrates	PLoS Genetics	2006	2(11)	e169	
ZDB-PUB-070210-42	17257056	Ma, M., and Jiang, Y.J.	Jagged2a-notch signaling mediates cell fate choice in the zebrafish pronephric duct	PLoS Genetics	2007	3(1)	e18	
ZDB-PUB-070409-9	17397257	Yeyati, P.L., Bancewicz, R.M., Maule, J., and van Heyningen, V.	Hsp90 Selectively Modulates Phenotype in Vertebrate Development	PLoS Genetics	2007	3(3)	e43	
ZDB-PUB-070625-3	17542649	Yang, C.T., Hindes, A.E., Hultman, K.A., and Johnson, S.L.	Mutations in gfpt1 and skiv2l2 Cause Distinct Stage-Specific Defects in Larval Melanocyte Regeneration in Zebrafish	PLoS Genetics	2007	3(6)	e88	
ZDB-PUB-070828-1	none	Bussmann, J., Bakkers, J., and Schulte-Merker, S.	Early Endocardial Morphogenesis Requires Scl/Tal1	PLoS Genetics	2007	3(8)	e140	
ZDB-PUB-080331-10	18369462	Li, C., Inglis, P.N., Leitch, C.C., Efimenko, E., Zaghloul, N.A., Mok, C.A., Davis, E.E., Bialas, N.J., Healey, M.P., Héon, E., Zhen, M., Swoboda, P., Katsanis, N., and Leroux, M.R.	An Essential Role for DYF-11/MIP-T3 in Assembling Functional Intraflagellar Transport Complexes	PLoS Genetics	2008	4(3)	e1000044	
ZDB-PUB-080506-9	18454195	Owens, K.N., Santos, F., Roberts, B., Linbo, T., Coffin, A.B., Knisely, A.J., Simon, J.A., Rubel, E.W., and Raible, D.W.	Identification of genetic and chemical modulators of zebrafish mechanosensory hair cell death	PLoS Genetics	2008	4(2)	e1000020	
ZDB-PUB-081008-13	18833302	Snow, C.J., Goody, M., Kelly, M.W., Oster, E.C., Jones, R., Khalil, A., and Henry, C.A.	Time-lapse analysis and mathematical characterization elucidate novel mechanisms underlying muscle morphogenesis	PLoS Genetics	2008	4(10)	e1000219	
ZDB-PUB-081217-12	19057675	Montpetit, A., Côté, S., Brustein, E., Drouin, C.A., Lapointe, L., Boudreau, M., Meloche, C., Drouin, R., Hudson, T.J., Drapeau, P., and Cossette, P.	Disruption of AP1S1, causing a novel neurocutaneous syndrome, perturbs development of the skin and spinal cord	PLoS Genetics	2008	4(12)	e1000296	
ZDB-PUB-090217-12	19197364	Dowling, J.J., Vreede, A.P., Low, S.E., Gibbs, E.M., Kuwada, J.Y., Bonnemann, C.G., and Feldman, E.L.	Loss of myotubularin function results in T-tubule disorganization in zebrafish and human myotubular myopathy	PLoS Genetics	2009	5(2)	e1000372	
ZDB-PUB-090424-19	19381250	Behra, M., Bradsher, J., Sougrat, R., Gallardo, V., Allende, M.L., and Burgess, S.M.	Phoenix is required for mechanosensory hair cell regeneration in the zebrafish lateral line	PLoS Genetics	2009	5(4)	e1000455	
ZDB-PUB-090511-26	19424431	Trapani, J.G., Obholzer, N., Mo, W., Brockerhoff, S.E., and Nicolson, T.	Synaptojanin1 is required for temporal fidelity of synaptic transmission in hair cells	PLoS Genetics	2009	5(5)	e1000480	
ZDB-PUB-090629-17	19543364	Yabe, T., Ge, X., Lindeman, R., Nair, S., Runke, G., Mullins, M.C., and Pelegri, F.	The maternal-effect gene cellular island encodes aurora B kinase and is essential for furrow formation in the early zebrafish embryo	PLoS Genetics	2009	5(6)	e1000518	
ZDB-PUB-091120-51	19911055	Reischauer, S., Levesque, M.P., Nüsslein-Volhard, C., and Sonawane, M.	Lgl2 executes its function as a tumor suppressor by regulating ErbB signaling in the zebrafish epidermis	PLoS Genetics	2009	5(11)	e1000720	
ZDB-PUB-091215-35	19956727	Lang, M.R., Patterson, L.B., Gordon, T.N., Johnson, S.L., and Parichy, D.M.	Basonuclin-2 requirements for zebrafish adult pigment pattern development and female fertility	PLoS Genetics	2009	5(11)	e1000744	
ZDB-PUB-070813-28	17687633	Chen, Y.H., Huang, F.L., Cheng, Y.C., Wu, C.J., Yang, C.N., and Tsay, H.J.	Knockdown of zebrafish Na(v)1.6 sodium channel impairs embryonic locomotor activities	Journal of Biomedical Science	2008	15(1)	69-78	
ZDB-PUB-080801-8	18661250	Lu, J.H., Lu, J.K., Choo, S.L., Li, Y.C., Yeh, H.W., Shiue, J.F., and Yeh, V.C.	Cascade effect of cardiac myogenesis gene expression during cardiac looping in tbx5 knockdown zebrafish embryos	Journal of Biomedical Science	2008	15(6)	779-787	
ZDB-PUB-050907-7	16132106	Kuo, M.W., Lou, S.W., Postlethwait, J., and Chung, B.C.	Chromosomal Organization, Evolutionary Relationship, and Expression of Zebrafish GnRH Family Members	Journal of Biomedical Science	2005	12(4)	629-639	
ZDB-PUB-060210-1	16456708	Wu, K.M., Huang, C.J., Hwang, S.P., and Chang, Y.S.	Molecular cloning, expression and characterization of the zebrafish bram1 gene, a BMP receptor-associated molecule	Journal of Biomedical Science	2006	13(3)	345-355	
ZDB-PUB-080512-4	18459070	Amali, A.A., Lin, C.J., Chen, Y.H., Wang, W.L., Gong, H.Y., Rekha, R.D., Lu, J.K., Chen, T.T., and Wu, J.L.	Overexpression of Myostatin2 in zebrafish reduces the expression of dystrophin associated protein complex (DAPC) which leads to muscle dystrophy	Journal of Biomedical Science	2008	15(5)	595-604	
ZDB-PUB-060210-2	16456712	Amali, A.A., Rekha, R.D., Lin, C.J., Wang, W.L., Gong, H.Y., Her, G.M., and Wu, J.L.	Thioacetamide induced liver damage in zebrafish embryo as a disease model for steatohepatitis	Journal of Biomedical Science	2006	13(2)	225-232	
ZDB-PUB-070726-8	17624603	Wang, N., Sun, Y.H., Liu, J., Wu, G., Su, J.G., Wang, Y.P., and Zhu, Z.Y.	Knock down of gfp and no tail expression in zebrafish embryo by in vivo-transcribed short hairpin RNA with T7 plasmid system	Journal of Biomedical Science	2007	14(6)	767-776	
ZDB-PUB-050930-5	16175402	Levin, E.D., Limpuangthip, J., Rachakonda, T., and Peterson, M.	Timing of nicotine effects on learning in zebrafish	Psychopharmacology	2006	184(3-4)	547-552	
ZDB-PUB-070122-39	17219220	Braida, D., Limonta, V., Pegorini, S., Zani, A., Guerini-Rocco, C., Gori, E., and Sala, M.	Hallucinatory and rewarding effect of salvinorin A in zebrafish: kappa-opioid and CB(1)-cannabinoid receptor involvement	Psychopharmacology	2007	190(4)	441-448	
ZDB-PUB-051012-24	16216337	Chang, M.X., Nie, P., Xie, H.X., Wang, G.L., and Gao, Y.	Characterization and expression analysis of TNF-related apoptosis inducing ligand (TRAIL) in grass carp Ctenopharyngodon idella	Veterinary Immunology and Immunopathology	2006	110(1-2)	51-63	
ZDB-PUB-070920-31	17868904	Xu, Z.Y., Sun, B.J., Chang, M.X., and Nie, P.	Characterization and expression analysis of TNFR-associated factor 1 (TRAF1) in grass carp Ctenopharyngodon idella	Veterinary Immunology and Immunopathology	2008	121(1-2)	44-57	
ZDB-PUB-080527-13	18495251	Chang, M.X., and Nie, P.	RNAi suppression of zebrafish peptidoglycan recognition protein 6 (zfPGRP6) mediated differentially expressed genes involved in Toll-like receptor signaling pathway and caused increased susceptibility to Flavobacterium columnare	Veterinary Immunology and Immunopathology	2008	124(3-4)	295-301	
ZDB-PUB-090914-25	19729206	Zenke, K., Nam, Y.K., and Kim, K.H.	Molecular cloning and expression analysis of double-stranded RNA-dependent protein kinase (PKR) in rock bream (Oplegnathus fasciatus)	Veterinary Immunology and Immunopathology	2010	133(2-4)	290-295	
ZDB-PUB-090616-34	19501921	Yeh, H.Y., and Klesius, P.H.	Channel catfish (Ictalurus punctatus Rafinesque, 1818) CD156a (ADAM metallopeptidase domain 8): cDNA clone, characterization and expression in tissues	Veterinary Immunology and Immunopathology	2009	132(2-4)	307-313	
ZDB-PUB-091023-9	19800136	Chen, W.Q., Xu, Q.Q., Chang, M.X., Zou, J., Secombes, C.J., Peng, K.M., and Nie, P.	Molecular characterization and expression analysis of the IFN-gamma related gene (IFN-gammarel) in grass carp Ctenopharyngodon idella	Veterinary Immunology and Immunopathology	2010	134(3-4)	199-207	
ZDB-PUB-091120-31	19896215	Xu, Q.Q., Chang, M.X., Xiao, F.S., Huang, B., and Nie, P.	The gene and virus-induced expression of IRF-5 in grass carp Ctenopharyngodon idella	Veterinary Immunology and Immunopathology	2010	134(3-4)	269-278	
ZDB-PUB-080501-5	18443208	Tse, H.Y., Li, V.W., Hui, M.N., Chan, P.K., and Cheng, S.H.	Data Mining for Chinese Materia Medica and Pharmacological Research	Journal of Biomolecular Screening	2008	13(5)	390-395	
ZDB-PUB-051031-7	16234346	Fleming, A., Sato, M., and Goldsmith, P.	High-Throughput In Vivo Screening for Bone Anabolic Compounds with Zebrafish	Journal of Biomolecular Screening	2005	10(8)	823-831	
ZDB-PUB-081203-9	19029015	Makky, K., Duvnjak, P., Pramanik, K., Ramchandran, R., and Mayer, A.N.	A Whole-Animal Microplate Assay for Metabolic Rate Using Zebrafish	Journal of Biomolecular Screening	2008	13(10)	960-967	
ZDB-PUB-060306-1	16490769	Okun, I., Malarchuk, S., Dubrovskaya, E., Khvat, A., Tkachenko, S., Kysil, V., Ilyin, A., Kravchenko, D., Prossnitz, E.R., Sklar, L., and Ivachtchenko, A.	Screening for Caspase-3 Inhibitors: A New Class of Potent Small-Molecule Inhibitors of Caspase-3	Journal of Biomolecular Screening	2006	11(3)	277-285	
ZDB-PUB-051031-13	16244882	Wang, R.Y., Zhang, T., Bao, Q., and Rawson, D.M.	Study on fish embryo responses to the treatment of cryoprotective chemicals using impedance spectroscopy	European Biophysics Journal	2006	35(3)	224-230	
ZDB-PUB-071118-26	17985127	Wang, R.Y., Guan, M., Rawson, D.M., and Zhang, T.	Ultrasound enhanced methanol penetration of zebrafish (Danio rerio) embryos measured by permittivity changes using impedance spectroscopy	European Biophysics Journal	2008	37(6)	1039-1044	
ZDB-PUB-051031-16	16244172	Molich, A., and Heisler, N.	Determination of pH by microfluorometry: intracellular and interstitial pH regulation in developing early-stage fish embryos (Danio rerio)	Journal of Experimental Biology Online	2005	208	4137-4149	
ZDB-PUB-090511-21	19423090	Feng, J., and Ip, H.H.	A statistical assembled deformable model (SAMTUS) for vasculature reconstruction	Computers in Biology and Medicine	2009	39(6)	489-500	
ZDB-PUB-051107-29	16263106	Feng, J., Han, C. S., Chan, P.K., and Ip, H.H.	Reconstruction and representation of caudal vasculature of zebrafish embryo from confocal scanning laser fluorescence microscopic images	Computers in Biology and Medicine	2005	35(10)	915-931	
ZDB-PUB-051114-3	16272396	Montanez, G.E., Neely, M.N., and Eichenbaum, Z.	The streptococcal iron uptake (Siu) transporter is required for iron uptake and virulence in a zebrafish infection model	Microbiology	2005	151 (11)	3749-3757	
ZDB-PUB-080309-27	18315364	Lu, J., Pereira, F., Fraser, S.E., and Gharib, M.	Three-dimensional real-time imaging of cardiac cell motions in living embryos	Journal of Biomedical Optics	2008	13(1)	014006	
ZDB-PUB-051121-12	16292961	Liebling, M., Forouhar, A.S., Gharib, M., Fraser, S.E., and Dickinson, M.E.	Four-dimensional cardiac imaging in living embryos via postacquisition synchronization of nongated slice sequences	Journal of Biomedical Optics	2005	10(5)	54001	
ZDB-PUB-061116-4	17092171	Chen, S.Y., Hsieh, C.S., Chu, S.W., Lin, C.Y., Ko, C.Y., Chen, Y.C., Tsai, H.J.,Hu, C.H., and Sun, C.K.	Noninvasive harmonics optical microscopy for long-term observation of embryonic nervous system development in vivo	Journal of Biomedical Optics	2006	11(5)	54022	
ZDB-PUB-070711-37	17614725	Fan, X., Majumder, A., Reagin, S.S., Porter, E.L., Sornborger, A.T., Keith, C.H., and Lauderdale, J.D.	New statistical methods enhance imaging of cameleon fluorescence resonance energy transfer in cultured zebrafish spinal neurons	Journal of Biomedical Optics	2007	12(3)	034017	
ZDB-PUB-090505-8	19405777	Pan, X., Shi, X., Korzh, V., Yu, H., and Wohland, T.	Line scan fluorescence correlation spectroscopy for three-dimensional microfluidic flow velocity measurements	Journal of Biomedical Optics	2009	14(2)	024049	
ZDB-PUB-070310-12	17343509	Pan, X., Yu, H., Shi, X., Korzh, V., and Wohland, T.	Characterization of flow direction in microchannels and zebrafish blood vessels by scanning fluorescence correlation spectroscopy	Journal of Biomedical Optics	2007	12(1)	014034-014044	
ZDB-PUB-090112-1	19123687	Hsieh, C.S., Ko, C.Y., Chen, S.Y., Liu, T.M., Wu, J.S., Hu, C.H., and Sun, C.K.	In vivo long-term continuous observation of gene expression in zebrafish embryo nerve systems by using harmonic generation microscopy and morphant technology	Journal of Biomedical Optics	2008	13(6)	064041	
ZDB-PUB-060105-3	16369549	Kloosterman, W.P., Wienholds, E., de Bruijn, E., Kauppinen, S., and Plasterk, R.H.	In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes	Nature Methods	2006	3(1)	27-29	
ZDB-PUB-070330-18	17369834	Scott, E.K., Mason, L., Arrenberg, A.B., Ziv, L., Gosse, N.J., Xiao, T., Chi, N.C., Asakawa, K., Kawakami, K., and Baier, H.	Targeting neural circuitry in zebrafish using GAL4 enhancer trapping	Nature Methods	2007	4(4)	323-326	
ZDB-PUB-070629-8	17572681	Goessling, W., North, T.E., and Zon, L.I.	Ultrasound biomicroscopy permits in vivo characterization of zebrafish liver tumors	Nature Methods	2007	4(7)	551-553	
ZDB-PUB-060424-6	16628208	Yaksi, E., and Friedrich, R.W.	Reconstruction of firing rate changes across neuronal populations by temporally deconvolved Ca(2+) imaging	Nature Methods	2006	3(5)	377-383	
ZDB-PUB-070711-14	17599082	Spitsbergen, J.	Imaging neoplasia in zebrafish	Nature Methods	2007	4(7)	548-549	
ZDB-PUB-090807-8	19648917	Ries, J., Yu, S.R., Burkhardt, M., Brand, M., and Schwille, P.	Modular scanning FCS quantifies receptor-ligand interactions in living multicellular organisms	Nature Methods	2009	6(9)	643-645	
ZDB-PUB-090914-13	19718031	Siripattarapravat, K., Pinmee, B., Venta, P.J., Chang, C.C., and Cibelli, J.B.	Somatic cell nuclear transfer in zebrafish	Nature Methods	2009	6(10)	733-735	
ZDB-PUB-091120-39	19898484	Dreosti, E., Odermatt, B., Dorostkar, M.M., and Lagnado, L.	A genetically encoded reporter of synaptic activity in vivo	Nature Methods	2009	6(12)	883-889	
ZDB-PUB-091120-40	19898487	Gehrig, J., Reischl, M., Kalmár, E., Ferg, M., Hadzhiev, Y., Zaucker, A., Song, C., Schindler, S., Liebel, U., and Müller, F.	Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos	Nature Methods	2009	6(12)	911-916	
ZDB-PUB-100211-23	20139970	Collins, R.T., Linker, C., and Lewis, J.	MAZe: a tool for mosaic analysis of gene function in zebrafish	Nature Methods	2010	7(3)	219-223	
ZDB-PUB-100309-11	20195251	Blackburn, J.S., and Langenau, D.M.	aMAZe-ing tools for mosaic analysis in zebrafish	Nature Methods	2010	7(3)	188-190	
ZDB-PUB-060124-20	16414212	Seok, S.H., Koo, H.C., Kasuga, A., Kim, Y., Lee, E.G., Lee, H., Park, J.H., Baek, M.W., Lee, H.Y., Kim, D.J., Lee, B.H., Lee, Y.S., Cho, S.N., and Park, J.H.	Use of PCR-restriction fragment length polymorphism for the identification of zoonotic mycobacteriosis in zebrafish caused by Mycobacterium abscessus and Mycobacterium chelonae	Veterinary Microbiology	2006	114(3-4)	292-297	
ZDB-PUB-060210-11	16458850	Kramer, W., Corsiero, D., Girbig, F., and Jahne, G.	Rabbit small intestine does not contain an annexin II/caveolin 1 complex as a target for 2-azetidinone cholesterol absorption inhibitors	Biochimica et Biophysica Acta (BBA) - Biomembranes	2006	1758(1)	45-54	
ZDB-PUB-060313-2	16500426	Feeney, G.P., Zheng, D., Kille, P., and Hogstrand. C.	The phylogeny of teleost ZIP and ZnT zinc transporters and their tissue specific expression and response to zinc in zebrafish	Biochimica et Biophysica Acta (BBA) - Biomembranes	2005	1732(1-3)	88-95	
ZDB-PUB-070523-9	17499862	Reynolds, J.G., McCalmon, S.A., Tomczyk, T., and Naya, F.J.	Identification and mapping of protein kinase A binding sites in the costameric protein myospryn	Biochimica et Biophysica Acta (BBA) - Biomembranes	2007	1773(6)	891-902	
ZDB-PUB-060315-9	16521537	[No authors listed]	Comparative structural analysis of myosin light chains and gene duplication in fish	Izv. Akad. Nauk Ser. Biol.	2006	1	38-43	
ZDB-PUB-060412-9	16583129	Kunkel, L.M., Bachrach, E., Bennett, R.R., Guyon, J., and Steffen, L.	Diagnosis and cell-based therapy for Duchenne muscular dystrophy in humans, mice, and zebrafish	Journal of Human Genetics	2006	51(5)	397-406	
ZDB-PUB-100202-14	20111057	Komoike, Y., Shimojima, K., Liang, J.S., Fujii, H., Maegaki, Y., Osawa, M., Fujii, S., Higashinakagawa, T., and Yamamoto, T.	A functional analysis of GABARAP on 17p13.1 by knockdown zebrafish	Journal of Human Genetics	2010	\ 	\ 	
ZDB-PUB-060418-1	16553308	Lewis, K.E.	How do genes regulate simple behaviours? Understanding how different neurons in the vertebrate spinal cord are genetically specified.	Philosophical transactions of the Royal Society of London	2006	361(1465)	45-66	
ZDB-PUB-060517-20	16687283	Carr, A.J., Tamai, T.K., Young, L.C., Ferrer, V., Dekens, M.P., and Whitmore, D.	Light reaches the very heart of the zebrafish clock	Chronobiology International	2006	23(1)	91-100	
ZDB-PUB-060616-31	16753940	Lopez-Olmeda, J.F., Madrid, J.A., and Sanchez-Vazquez, F.J.	Light and Temperature Cycles as Zeitgebers of Zebrafish (Danio rerio) Circadian Activity Rhythms	Chronobiology International	2006	23(3)	537-550	
ZDB-PUB-090914-30	19731109	Sanchez, J.A., and Sanchez-Vazquez, F.J.	Feeding entrainment of daily rhythms of locomotor activity and clock gene expression in zebrafish brain	Chronobiology International	2009	26(6)	1120-1135	
ZDB-PUB-060517-21	16687284	Ziv, L., and Gothilf, Y.	Period2 expression pattern and its role in the development of the pineal circadian clock in zebrafish	Chronobiology International	2006	23(1)	101-112	
ZDB-PUB-090217-36	19212837	López-Olmeda, J.F., and Sánchez-Vázquez, F.J.	Zebrafish temperature selection and synchronization of locomotor activity circadian rhythm to ahemeral cycles of light and temperature	Chronobiology International	2009	26(2)	200-218	
ZDB-PUB-090914-29	19731108	Farhat, F.P., Martins, C.B., De Lima, L.H., Isoldi, M.C., and Castrucci, A.M.	Melanopsin and clock genes: regulation by light and endothelin in the zebrafish ZEM-2S cell line	Chronobiology International	2009	26(6)	1090-1119	
ZDB-PUB-060616-6	16728330	Hirashima, M., and Suda, T.	Differentiation of arterial and venous endothelial cells and vascular morphogenesis	Endothelium	2006	13(2)	137-145	
ZDB-PUB-060623-1	16777275	Novoa, B., Romero, A., Mulero, V., Rodriguez, I., Fernandez, I., and Figueras, A.	Zebrafish (Danio rerio) as a model for the study of vaccination against viral haemorrhagic septicemia virus (VHSV)	Vaccine	2006	24(31-31)	5806-5816	
ZDB-PUB-081022-3	18840493	Ruiz, S., Tafalla, C., Cuesta, A., Estepa, A., and Coll, J.M.	In vitro search for alternative promoters to the human immediate early cytomegalovirus (IE-CMV) to express the G gene of viral haemorrhagic septicemia virus (VHSV) in fish epithelial cells	Vaccine	2008	26(51)	6620-6629	
ZDB-PUB-060703-8	16799861	Gonzalez, P., Baudrimont, M., Boudou, A., and Bourdineaud, J.P.	Comparative Effects of Direct Cadmium Contamination on Gene Expression in Gills, Liver, Skeletal Muscles and Brain of the Zebrafish (Danio rerio)	BioMetals	2006	19(3)	225-235	
ZDB-PUB-060724-10	16842121	Chakraborty, C., Nandi, S.S., Sinha, S., and Gera, V.K.	Zebrafish caspase-3: molecular cloning, characterization, crystallization and phylogenetic analysis	Protein and Peptide Letters	2006	13(6)	633-640	
ZDB-PUB-090302-1	19225620	Ong, E.S., Chor, C.F., Zou, L., and Ong, C.N.	A multi-analytical approach for metabolomic profiling of zebrafish (Danio rerio) livers	Molecular Biosystems	2009	5(3)	288-298	
ZDB-PUB-070122-32	17216056	Anderson, C., Bartlett, S.J., Gansner, J.M., Wilson, D., He, L., Gitlin, J.D., Kelsh, R.N., and Dowden, J.	Chemical genetics suggests a critical role for lysyl oxidase in zebrafish notochord morphogenesis	Molecular Biosystems	2007	3(1)	51-59	
ZDB-PUB-091023-38	19823752	Zhong, H., Zou, H., Semenov, M.V., Moshinsky, D., He, X., Huang, H., Li, S., Quan, J., Yang, Z., and Lin, S.	Characterization and development of novel small-molecules inhibiting GSK3 and activating Wnt signaling	Molecular Biosystems	2009	5(11)	1356-1360	
ZDB-PUB-100105-7	20024078	Stein, M., Gabdoulline, R.R., and Wade, R.C.	Cross-species analysis of the glycolytic pathway by comparison of molecular interaction fields	Molecular Biosystems	2010	6(1)	152-164	
ZDB-PUB-060807-6	16880968	Jung, D.W., Williams, D., Khersonsky, S.M., Kang, T.W., Heidary, N., Chang, Y.T.,  and Orlow, S.J.	Identification of the F1F0 mitochondrial ATPase as a target for modulating skin pigmentation by screening a tagged triazine library in zebrafish	Molecular Biosystems	2005	1(1)	85-92	
ZDB-PUB-080421-8	18414741	Blidner, R.A., Svoboda, K.R., Hammer, R.P., and Monroe, W.T.	Photoinduced RNA interference using DMNPE-caged 2'-deoxy-2'-fluoro substituted nucleic acids in vitro and in vivo	Molecular Biosystems	2008	4(5)	431-440	
ZDB-PUB-060816-34	16879340	Xu, P., Wang, S., Liu, L., Peatman, E., Somridhivej, B., Thimmapuram, J., Gong, G., and Liu, Z.	Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species	Animal Genetics	2006	37(4)	321-326	
ZDB-PUB-060911-1	16954046	Perelygin, A.A., Lear, T.L., Zharkikh, A.A., and Brinton, M.A.	Comparative analysis of vertebrate EIF2AK2 (PKR) genes and assignment of the equine gene to ECA15q24-q25 and the bovine gene to BTA11q12-q15	Genetics Selection Evolution	2006	38(5)	551-563	
ZDB-PUB-071227-22	17129566	Zhong, L., Yu, X., and Tong, J.	Sox genes in grass carp (Ctenopharyngodon idella) with their implications for genome duplication and evolution	Genetics Selection Evolution	2006	38(6)	673-687	
ZDB-PUB-060921-20	16978605	Damodaran, S., Dlugos, C.A., Wood, T.D., and Rabin, R.A.	Effects of chronic ethanol administration on brain protein levels: A proteomic investigation using 2-D DIGE system	European Journal of Pharmacology	2006	547(1-3)	75-82	
ZDB-PUB-061010-12	17008717	Park, D.J., Freitas, T.A., Wallick, C.J., Guyette, C.V., and Warn-Cramer, B.J.	Molecular dynamics and in vitro analysis of Connexin43: A new 14-3-3 mode-1 interacting protein	Protein Science	2006	15(10)	2344-2355	
ZDB-PUB-070625-25	17561780	Gustavsson, L., Hollert, H., Jonsson, S., van Bavel, B., and Engwall, M.	Reed beds receiving industrial sludge containing nitroaromatic compounds. Effects of outgoing water and bed material extracts in the umu-c genotoxicity assay, DR-CALUX assay and on early life stage development in zebrafish (Danio rerio)	Environmental Science and Pollution Research	2007	14(3)	202-211	
ZDB-PUB-061031-16	17067025	Keiter, S., Rastall, A., Kosmehl, T., Wurm, K., Erdinger, L., Braunbeck, T., and Hollert, H.	Ecotoxicological assessment of sediment, suspended matter and water samples in the upper Danube River. A pilot study in search for the causes for the decline of fish catches	Environmental Science and Pollution Research	2006	13(5)	308-319	
ZDB-PUB-090112-22	19132427	Kammann, U., Vobach, M., Wosniok, W., Schäffer, A., and Telscher, M.	Acute toxicity of 353-nonylphenol and its metabolites for zebrafish embryos	Environmental Science and Pollution Research	2009	16(2)	227-231	
ZDB-PUB-090319-3	19283420	Oliveira, R., Domingues, I., Koppe Grisolia, C., and Soares, A.M.	Effects of triclosan on zebrafish early-life stages and adults	Environmental Science and Pollution Research	2009	16(6)	679-688	
ZDB-PUB-080630-6	18575912	Scholz, S., Fischer, S., Gündel, U., Küster, E., Luckenbach, T., and Voelker, D.	The zebrafish embryo model in environmental risk assessment-applications beyond acute toxicity testing	Environmental Science and Pollution Research	2008	15(5)	394-404	
ZDB-PUB-061116-12	17098432	Uckun, F.M., Dibirdik, I., Qazi, S., Vassilev, A., Ma, H., Mao, C., Benyumov, A., and Emami, K.H.	Anti-breast cancer activity of LFM-A13, a potent inhibitor of Polo-like kinase (PLK)	Bioorganic & Medicinal Chemistry	2007	15(2)	800-814	
ZDB-PUB-061222-8	15956043	Ramirez, O.A., and Garcia, F.P.	Genotoxic damage in zebra fish (Danio rerio) by arsenic in waters from Zimapan, Hidalgo, Mexico	Mutagenesis	2005	20(4)	291-295	
ZDB-PUB-080515-5	18469325	Feitsma, H., de Bruijn, E., van de Belt, J., Nijman, I.J., and Cuppen, E.	Mismatch repair deficiency does not enhance ENU mutagenesis in the zebrafish germ line	Mutagenesis	2008	23(4)	325-329	
ZDB-PUB-061226-6	16157688	Barreto, V.M., Pan-Hammarstrom, Q., Zhao, Y., Hammarstrom, L., Misulovin, Z., and Nussenzweig, M.C.	AID from bony fish catalyzes class switch recombination	The Journal of experimental medicine	2005	202(6)	733-738	
ZDB-PUB-061227-23	17147780	Fame, R.M., Brajon, C., and Ghysen, A.	Second-order projection from the posterior lateral line in the early zebrafish brain	Neural Development	2006	1	4	
ZDB-PUB-070330-6	17359546	Hendricks, M., and Jesuthasan, S.	Electroporation-based methods for in vivo, whole mount and primary culture analysis of zebrafish brain development	Neural Development	2007	2(1)	6	
ZDB-PUB-080306-12	18289389	Wolman, M.A., Sittaramane, V., Essner, J.J., Yost, H.J., Chandrasekhar, A., and Halloran, M.C.	Transient axonal glycoprotein-1 (TAG-1) and laminin-alpha1 regulate dynamic growth cone behaviors and initial axon direction in vivo	Neural Development	2008	3	6	
ZDB-PUB-080528-1	18377638	Bianco, I.H., Carl, M., Russell, C., Clarke, J.D., and Wilson, S.W.	Brain asymmetry is encoded at the level of axon terminal morphology	Neural Development	2008	3	9	
ZDB-PUB-090407-14	19341460	Rhinn, M., Lun, K., Ahrendt, R., Geffarth, M., and Brand, M.	Zebrafish gbx1 refines the midbrain-hindbrain boundary border and mediates the Wnt8 posteriorization signal	Neural Development	2009	4	12	
ZDB-PUB-090616-44	19505305	Yonkers, M.A., and Ribera, A.B.	Molecular components underlying nongenomic thyroid hormone signaling in embryonic zebrafish neurons	Neural Development	2009	4	20	
ZDB-PUB-070210-9	17229313	Lesaffre, B., Joliot, A., Prochiantz, A., and Volovitch, M.	Direct non-cell autonomous Pax6 activity regulates eye development in the zebrafish	Neural Development	2007	2(1)	2	
ZDB-PUB-081218-37	19087349	Nevin, L.M., Taylor, M.R., and Baier, H.	Hardwiring of fine synaptic layers in the zebrafish visual pathway	Neural Development	2008	3	36	
ZDB-PUB-090407-16	19344499	Vitorino, M., Jusuf, P.R., Maurus, D., Yukiko, Y., Higashijima, S.I., and Harris, W.A.	Vsx2 in the zebrafish retina: restricted lineages through derepression	Neural Development	2009	4	14	
ZDB-PUB-061227-22	17147778	Zolessi, F.R., Poggi, L., Wilkinson, C.J., Chien, C.B., and Harris, W.A.	Polarization and orientation of retinal ganglion cells in vivo	Neural Development	2006	1	2	
ZDB-PUB-070813-21	17686145	Ghysen, A., Dambly-Chaudiere, C., and Raible, D.	Making sense of zebrafish neural development in the Minervois	Neural Development	2007	2(1)	15	
ZDB-PUB-080801-12	18664287	Tallafuss, A., and Eisen, J.S.	The Met receptor tyrosine kinase prevents zebrafish primary motoneurons from expressing an incorrect neurotransmitter	Neural Development	2008	3	18	
ZDB-PUB-090629-25	19549326	Kurrasch, D.M., Nevin, L.M., Wong, J., Baier, H., and Ingraham, H.A.	Neuroendocrine transcriptional programs adapt dynamically to the supply and demand for neuropeptides as revealed in NSF mutant zebrafish	Neural Development	2009	4	22	
ZDB-PUB-090914-32	19732413	Jusuf, P.R., and Harris, W.A.	Ptf1a is expressed transiently in all types of amacrine cells in the embryonic zebrafish retina	Neural Development	2009	4	34	
ZDB-PUB-080218-21	18212345	Lucitt, M.B., Price, T.S., Pizarro, A., Wu, W., Yocum, A.K., Seiler, C., Pack, M.A., Blair, I.A., Fitzgerald, G.A., and Grosser, T.	Analysis of the zebrafish proteome during embryonic development	Molecular & cellular proteomics	2008	7(5)	981-994	
ZDB-PUB-080616-26	18550893	Lemeer, S., Jopling, C., Gouw, J.W., Mohammed, S., Heck, A.J., Slijper, M., and den Hertog, J.	Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos	Molecular & cellular proteomics	2008	7(11)	2176-2187	
ZDB-PUB-061227-39	17164401	Price, T.S., Lucitt, M.B., Wu, W., Austin, D.J., Pizarro, A., Yocum, A.K., Blair, I.A., Fitzgerald, G.A., and Grosser, T.	EBP, a program for protein identification using multiple tandem mass spectrometry datasets	Molecular & cellular proteomics	2007	6(3)	527-536	
ZDB-PUB-070820-8	17698882	Lemeer, S.M., Ruijtenbeek, R., Pinkse, M.W., Jopling, C., Heck, A.J., den Hertog, J., and Slijper, M.	Endogenous phosphotyrosine signaling in zebrafish embryos	Molecular & cellular proteomics	2007	6(12)	2088-2099	
ZDB-PUB-061229-21	17183640	Yu, L., Tucci, V., Kishi, S., and Zhdanova, I.V.	Cognitive aging in zebrafish	PLoS One	2006	1(1)	e14	
ZDB-PUB-070330-32	17375188	Hsiao, C.D., You, M.S., Guh, Y.J., Ma, M., Jiang, Y.J., and Hwang, P.P.	A Positive Regulatory Loop between foxi3a and foxi3b Is Essential for Specification and Differentiation of Zebrafish Epidermal Ionocytes	PLoS One	2007	2(1)	e302	
ZDB-PUB-070427-24	17440615	Pfister, P., Randall, J., Montoya-Burgos, J.I., and Rodriguez, I.	Divergent Evolution among Teleost V1r Receptor Genes	PLoS One	2007	2(1)	e379	
ZDB-PUB-070504-19	17460765	Ribeiro, I., Kawakami, Y., Buscher, D., Raya, A., Rodriguez-Leon, J., Morita, M., Rodriguez Esteban, C., and Izpisua Belmonte, J.C.	Tbx2 and Tbx3 Regulate the Dynamics of Cell Proliferation during Heart Remodeling	PLoS One	2007	2(1)	e398	
ZDB-PUB-070920-2	17848993	Wang, W., Liu, X., Gelinas, D., Ciruna, B., and Sun, Y.	A fully automated robotic system for microinjection of zebrafish embryos	PLoS One	2007	2(9)	e862	
ZDB-PUB-071009-8	17912356	Azuma, M., Embree, L.J., Sabaawy, H., and Hickstein, D.D.	Ewing sarcoma protein ewsr1 maintains mitotic integrity and proneural cell survival in the zebrafish embryo	PLoS One	2007	2(10)	e979	
ZDB-PUB-080209-3	18183297	Tabor, R., and Friedrich, R.W.	Pharmacological analysis of ionotropic glutamate receptor function in neuronal circuits of the zebrafish olfactory bulb	PLoS One	2008	3(1)	e1416	
ZDB-PUB-080825-26	18682726	Grosskurth, S.E., Bhattacharya, D., Wang, Q., and Lin, J.J.	Emergence of Xin demarcates a key innovation in heart evolution	PLoS One	2008	3(8)	e2857	
ZDB-PUB-080908-10	18769591	Bill, B.R., Balciunas, D., McCarra, J.A., Young, E.D., Xiong, T., Spahn, A.M., Garcia-Lecea, M., Korzh, V., Ekker, S.C., and Schimmenti, L.A.	Development and notch signaling requirements of the zebrafish choroid plexus	PLoS One	2008	3(9)	e3114	
ZDB-PUB-081022-9	18846223	Imamura, S., Uchiyama, J., Koshimizu, E., Hanai, J., Raftopoulou, C., Murphey, R.D., Bayliss, P.E., Imai, Y., Burns, C.E., Masutomi, K., Gagos, S., Zon, L.I., Roberts, T.M., and Kishi, S.	A non-canonical function of zebrafish telomerase reverse transcriptase is required for developmental hematopoiesis	PLoS One	2008	3(10)	e3364	
ZDB-PUB-081121-10	19008958	Sun, H., Skogerbo, G., Wang, Z., Liu, W., and Li, Y.	Structural relationships between highly conserved elements and genes in vertebrate genomes	PLoS One	2008	3(11)	e3727	
ZDB-PUB-081121-13	19011686	Hong, S.K., and Dawid, I.B.	Alpha2 macroglobulin-like is essential for liver development in zebrafish	PLoS One	2008	3(11)	e3736	
ZDB-PUB-090123-18	19158954	Tu, C.T., Yang, T.C., and Tsai, H.J.	Nkx2.7 and Nkx2.5 function redundantly and are required for cardiac morphogenesis of zebrafish embryos	PLoS One	2009	4(1)	e4249	
ZDB-PUB-090204-19	19169355	Meani, N., Pezzimenti, F., Deflorian, G., Mione, M., and Alcalay, M.	The tumor suppressor PRDM5 regulates Wnt signaling at early stages of zebrafish development	PLoS One	2009	4(1)	e4273	
ZDB-PUB-090217-13	19198653	Foley, J.E., Yeh, J.R., Maeder, M.L., Reyon, D., Sander, J.D., Peterson, R.T., and Joung, J.K.	Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN)	PLoS One	2009	4(2)	e4348	
ZDB-PUB-090227-10	19223970	Faucherre, A., Pujol-Martí, J., Kawakami, K., and Lopez-Schier, H.	Afferent neurons of the zebrafish lateral line are strict selectors of hair-cell orientation	PLoS One	2009	4(2)	e4477	
ZDB-PUB-090330-8	19319186	Sassi-Messai, S., Gibert, Y., Bernard, L., Nishio, S., Ferri Lagneau, K.F., Molina, J., Andersson-Lendahl, M., Benoit, G., Balaguer, P., and Laudet, V.	The phytoestrogen genistein affects zebrafish development through two different pathways	PLoS One	2009	4(3)	e4935	
ZDB-PUB-090629-31	19557173	Lightcap, C.M., Kari, G., Arias-Romero, L.E., Chernoff, J., Rodeck, U., and Williams, J.C.	Interaction with LC8 is required for Pak1 nuclear import and is indispensable for zebrafish development	PLoS One	2009	4(6)	e6025	
ZDB-PUB-090706-23	19572019	Kategaya, L.S., Changkakoty, B., Biechele, T., Conrad, W.H., Kaykas, A., Dasgupta, R., and Moon, R.T.	Bili inhibits Wnt/beta-catenin signaling by regulating the recruitment of axin to LRP6	PLoS One	2009	4(7)	e6129	
ZDB-PUB-090914-47	19742326	Chen, H., Contreras, X., Yamaguchi, Y., Handa, H., Peterlin, B.M., and Guo, S.	Repression of RNA polymerase II elongation in vivo is critically dependent on the C-terminus of Spt5	PLoS One	2009	4(9)	e6918	
ZDB-PUB-091120-27	19893745	Armer, H.E., Mariggi, G., Png, K.M., Genoud, C., Monteith, A.G., Bushby, A.J., Gerhardt, H., and Collinson, L.M.	Imaging transient blood vessel fusion events in zebrafish by correlative volume electron microscopy	PLoS One	2009	4(11)	e7716	
ZDB-PUB-091221-16	20011517	Alexa, K., Choe, S.K., Hirsch, N., Etheridge, L., Laver, E., and Sagerström, C.G.	Maternal and zygotic aldh1a2 activity is required for pancreas development in zebrafish	PLoS One	2009	4(12)	e8261	
ZDB-PUB-091221-31	20020044	Song, Y., Selak, M.A., Watson, C.T., Coutts, C., Scherer, P.C., Panzer, J.A., Gibbs, S., Scott, M.O., Willer, G., Gregg, R.G., Ali, D.W., Bennett, M.J., and Balice-Gordon, R.J.	Mechanisms Underlying Metabolic and Neural Defects in Zebrafish and Human Multiple Acyl-CoA Dehydrogenase Deficiency (MADD)	PLoS One	2009	4(12)	e8329	
ZDB-PUB-100105-32	20041163	Christiansen, H.E., Lang, M.R., Pace, J.M., and Parichy, D.M.	Critical early roles for col27a1a and col27a1b in zebrafish notochord morphogenesis, vertebral mineralization and post-embryonic axial growth	PLoS One	2009	4(12)	e8481	
ZDB-PUB-100126-18	20098718	Mitchell, I.C., Brown, T.S., Terada, L.S., Amatruda, J.F., and Nwariaku, F.E.	Effect of Vascular Cadherin Knockdown on Zebrafish Vasculature during Development	PLoS One	2010	5(1)	e8807	
ZDB-PUB-100223-41	20161780	Huang, H., and Wu, Q.	Cloning and comparative analyses of the zebrafish ugt repertoire reveal its evolutionary diversity	PLoS One	2010	5(2)	e9144	
ZDB-PUB-061229-22	17183665	Uechi, T., Nakajima, Y., Nakao, A., Torihara, H., Chakraborty, A., Inoue, K., and Kenmochi, N.	Ribosomal protein gene knockdown causes developmental defects in zebrafish	PLoS One	2006	1(1)	e37	
ZDB-PUB-070122-38	17218990	Pickart, M.A., Klee, E.W., Nielsen, A.L., Sivasubbu, S., Mendenhall, E.M., Bill  B.R., Chen, E., Eckfeldt, C.E., Knowlton, M., Robu, M.E., Larson, J.D., Deng, Y., Schimmenti, L.A., Ellis, L.B., Verfaillie, C.M., Hammerschmidt, M., Farber, S.A., and Ekker, S.C.	Genome-wide reverse genetics framework to identify novel functions of the vertebrate secretome	PLoS One	2006	1(1)	e104	
ZDB-PUB-070427-9	17426814	Abbasi, A.A., Paparidis, Z., Malik, S., Goode, D.K., Callaway, H., Elgar, G., and Grzeschik, K.H.	Human GLI3 Intragenic Conserved Non-Coding Sequences Are Tissue-Specific Enhancers	PLoS One	2007	2(1)	e366	
ZDB-PUB-070711-34	17611617	Lemeer, S., Jopling, C., Naji, F., Ruijtenbeek, R., Slijper, M., Heck, A.J., and den Hertog, J.	Protein-tyrosine kinase activity profiling in knock down zebrafish embryos	PLoS One	2007	2(1)	e581	
ZDB-PUB-080124-5	18167555	Woltering, J.M., and Durston, A.J.	MiR-10 Represses HoxB1a and HoxB3a in Zebrafish	PLoS One	2008	3(1)	e1396	
ZDB-PUB-080218-22	18213372	Wang, Z., Zhang, S., Wang, G., and An, Y.	Complement Activity in the Egg Cytosol of Zebrafish Danio rerio: Evidence for the Defense Role of Maternal Complement Components	PLoS One	2008	3(1)	e1463	
ZDB-PUB-080309-5	18253488	Yang, D.C., Tsay, H.J., Lin, S.Y., Chiou, S.H., Li, M.J., Chang, T.J., and Hung, S.C.	cAMP/PKA Regulates Osteogenesis, Adipogenesis and Ratio of RANKL/OPG mRNA Expression in Mesenchymal Stem Cells by Suppressing Leptin	PLoS One	2008	3(2)	e1540	
ZDB-PUB-080326-4	18335061	Sreenivasan, R., Cai, M., Bartfai, R., Wang, X., Christoffels, A., and Orban, L.	Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain	PLoS One	2008	3(3)	e1791	
ZDB-PUB-080415-3	18398471	Sachidanandan, C., Yeh, J.R., Peterson, Q.P., and Peterson, R.T.	Identification of a novel retinoid by small molecule screening with zebrafish embryos	PLoS One	2008	3(4)	e1947	
ZDB-PUB-080728-10	18648503	Cao, R., Jensen, L.D., Söll, I., Hauptmann, G., and Cao, Y.	Hypoxia-induced retinal angiogenesis in zebrafish as a model to study retinopathy	PLoS One	2008	3(7)	e2748	
ZDB-PUB-080801-14	18665240	Arduini, B.L., Gallagher, G.R., and Henion, P.D.	Zebrafish endzone regulates neural crest-derived chromatophore differentiation and morphology	PLoS One	2008	3(7)	e2845	
ZDB-PUB-080825-27	18682746	Liu, L., Zhu, S., Gong, Z., and Low, B.C.	K-ras/PI3K-Akt signaling is essential for zebrafish hematopoiesis and angiogenesis	PLoS One	2008	3(8)	e2850	
ZDB-PUB-080908-11	18769618	García-Lecea, M., Kondrychyn, I., Fong, S.H., Ye, Z.R., and Korzh, V.	In vivo Analysis of Choroid Plexus Morphogenesis in Zebrafish	PLoS One	2008	3(9)	e3090	
ZDB-PUB-081028-11	18941507	Lai, S.L., Chan, T.H., Lin, M.J., Huang, W.P., Lou, S.W., and Lee, S.J.	Diaphanous-related formin 2 and profilin I are required for gastrulation cell movements	PLoS One	2008	3(10)	e3439	
ZDB-PUB-081105-15	18978947	Krishnan, K., Salomonis, N., and Guo, S.	Identification of Spt5 target genes in zebrafish development reveals its dual activity in vivo	PLoS One	2008	3(11)	e3621	
ZDB-PUB-081218-26	19081843	Zhou, J., Li, W., Kamei, H., and Duan, C.	Duplication of the IGFBP-2 gene in teleost fish: protein structure and functionality conservation and gene expression divergence	PLoS One	2008	3(12)	e3926	
ZDB-PUB-090112-14	19129914	Chakraborty, A., Uechi, T., Higa, S., Torihara, H., and Kenmochi, N.	Loss of ribosomal protein L11 affects zebrafish embryonic development through a p53-dependent apoptotic response	PLoS One	2009	4(1)	e4152	
ZDB-PUB-090217-6	19194508	Xiang, J., Yang, H., Che, C., Zou, H., Yang, H., Wei, Y., Quan, J., Zhang, H., Yang, Z., and Lin, S.	Identifying tumor cell growth inhibitors by combinatorial chemistry and zebrafish assays	PLoS One	2009	4(2)	e4361	
ZDB-PUB-090227-11	19223977	Wang, Z., Zhang, S., Tong, Z., Li, L., and Wang, G.	Maternal transfer and protective role of the alternative complement components in zebrafish Danio rerio	PLoS One	2009	4(2)	e4498	
ZDB-PUB-090302-32	19247481	Hans, S., Kaslin, J., Freudenreich, D., and Brand, M.	Temporally-controlled site-specific recombination in zebrafish	PLoS One	2009	4(2)	e4640	
ZDB-PUB-090330-17	19325702	Mei, J., Li, Z., and Gui, J.F.	Cooperation of Mtmr8 with PI3K regulates actin filament modeling and muscle development in zebrafish	PLoS One	2009	4(3)	e4979	
ZDB-PUB-090330-6	19308258	Gomez, G.A., Veldman, M.B., Zhao, Y., Burgess, S., and Lin, S.	Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish	PLoS One	2009	4(3)	e4994	
ZDB-PUB-090330-9	19319195	Kuo, M.W., Wang, S.H., Chang, J.C., Chang, C.H., Huang, L.J., Lin, H.H., Yu, A.L., Li, W.H., and Yu, J.	A novel puf-A gene predicted from evolutionary analysis is involved in the development of eyes and primordial germ-cells	PLoS One	2009	4(3)	e4980	
ZDB-PUB-090417-4	19365553	Sakamoto, K., Onimaru, K., Munakata, K., Suda, N., Tamura, M., Ochi, H., and Tanaka, M.	Heterochronic shift in Hox-mediated activation of sonic hedgehog leads to morphological changes during fin development	PLoS One	2009	4(4)	e5121	
ZDB-PUB-090616-37	19503615	Montero-Balaguer, M., Swirsding, K., Orsenigo, F., Cotelli, F., Mione, M., and Dejana, E.	Stable vascular connections and remodeling require full expression of VE-cadherin in zebrafish embryos	PLoS One	2009	4(6)	e5772	
ZDB-PUB-090622-11	19536294	Ma, L.H., Punnamoottil, B., Rinkwitz, S., and Baker, R.	Mosaic hoxb4a neuronal pleiotropism in zebrafish caudal hindbrain	PLoS One	2009	4(6)	e5944	
ZDB-PUB-090716-1	19582161	Dong, M., Fu, Y.F., Du, T.T., Jing, C.B., Fu, C.T., Chen, Y., Jin, Y., Deng, M., and Liu, T.X.	Heritable and lineage-specific gene knockdown in zebrafish embryo	PLoS One	2009	4(7)	e6125	
ZDB-PUB-090807-10	19649243	Alsop, D., Ings, J.S., and Vijayan, M.M.	Adrenocorticotropic hormone suppresses gonadotropin-stimulated estradiol release from zebrafish ovarian follicles	PLoS One	2009	4(7)	e6463	
ZDB-PUB-090814-12	19672291	Huang, Y.Y., Tschopp, M., and Neuhauss, S.C.	Illusionary self-motion perception in zebrafish	PLoS One	2009	4(8)	e6550	
ZDB-PUB-091005-5	19789708	Liu, S., Li, Z., and Gui, J.F.	Fish-specific duplicated dmrt2b contributes to a divergent function through Hedgehog pathway and maintains left-right asymmetry establishment function	PLoS One	2009	4(9)	e7261	
ZDB-PUB-091204-29	19936290	den Broeder, M.J., van der Linde, H., Brouwer, J.R., Oostra, B.A., Willemsen, R., and Ketting, R.F.	Generation and characterization of FMR1 knockout zebrafish	PLoS One	2009	4(11)	e7910	
ZDB-PUB-100105-25	20037653	Kim, S., Carrillo, M., Kulkarni, V., and Jagadeeswaran, P.	Evolution of primary hemostasis in early vertebrates	PLoS One	2009	4(12)	e8403	
ZDB-PUB-100121-1	none	LeClair, E.E., and Topczewski, J.	Development and Regeneration of the Zebrafish Maxillary Barbel: A Novel Study System for Vertebrate Tissue Growth and Repair	PLoS One	2010	5(1)	e8737	
ZDB-PUB-100223-40	20161747	Wan, X., Ji, W., Mei, X., Zhou, J., Liu, J.X., Fang, C., and Xiao, W.	Negative Feedback Regulation of Wnt4 Signaling by EAF1 and EAF2/U19	PLoS One	2010	5(2)	e9118	
ZDB-PUB-100223-42	20161793	Naumann, U., Cameroni, E., Pruenster, M., Mahabaleshwar, H., Raz, E., Zerwes, H.G., Rot, A., and Thelen, M.	CXCR7 Functions as a Scavenger for CXCL12 and CXCL11	PLoS One	2010	5(2)	e9175	
ZDB-PUB-100223-59	20174467	Chen, H.L., Yuh, C.H., and Wu, K.K.	Nestin Is Essential for Zebrafish Brain and Eye Development through Control of Progenitor Cell Apoptosis	PLoS One	2010	5(2)	e9318	
ZDB-PUB-070726-3	17622340	Shang, E.H., and Zhdanova, I.V.	The circadian system is a target and modulator of prenatal cocaine effects	PLoS One	2007	2(1)	e587	
ZDB-PUB-070827-16	17710153	Freitas, R., Zhang, G., and Cohn, M.J.	Biphasic Hoxd gene expression in shark paired fins reveals an ancient origin of the distal limb domain	PLoS One	2007	2(1)	e754	
ZDB-PUB-071001-14	17895999	Grzmil, M., Whiting, D., Maule, J., Anastasaki, C., Amatruda, J.F., Kelsh, R.N., Norbury, C.J., and Patton, E.E.	The INT6 Cancer Gene and MEK Signaling Pathways Converge during Zebrafish Development	PLoS One	2007	2(9)	e959	
ZDB-PUB-071125-2	18000534	Wang, L., Dutta, S.K., Kojima, T., Xu, X., Khosravi-Far, R., Ekker, S.C., and Mukhopadhyay, D.	Neuropilin-1 Modulates p53/Caspases Axis to Promote Endothelial Cell Survival	PLoS One	2007	2(11)	e1161	
ZDB-PUB-080218-23	18213387	Hegde, A., Qiu, N.C., Qiu, X., Ho, S.H., Tay, K.Q., George, J., Ng, F.S., Govindarajan, K.R., Gong, Z., Mathavan, S., and Jiang, Y.J.	Genomewide Expression Analysis in Zebrafish mind bomb Alleles with Pancreas Defects of Different Severity Identifies Putative Notch Responsive Genes	PLoS One	2008	3(1)	e1479	
ZDB-PUB-080218-4	18197245	Pézeron, G., Lambert, G., Dickmeis, T., Strähle, U., Rosa, F.M., and Mourrain, P.	Rasl11b knock down in zebrafish suppresses one-eyed-pinhead mutant phenotype	PLoS One	2008	3(1)	e1434	
ZDB-PUB-080226-14	18231586	Sun, X.J., Xu, P.F., Zhou, T., Hu, M., Fu, C.T., Zhang, Y., Jin, Y., Chen, Y., Chen, S.J., Huang, Q.H., Liu, T.X., and Chen, Z.	Genome-Wide Survey and Developmental Expression Mapping of Zebrafish SET Domain-Containing Genes	PLoS One	2008	3(1)	e1499	
ZDB-PUB-080309-6	18253507	Macqueen, D.J., and Johnston, I.A.	An Update on MyoD Evolution in Teleosts and a Proposed Consensus Nomenclature to Accommodate the Tetraploidization of Different Vertebrate Genomes	PLoS One	2008	3(2)	e1567	
ZDB-PUB-080501-11	18446220	Hong, S.K., Tsang, M., and Dawid, I.B.	The Mych Gene Is Required for Neural Crest Survival during Zebrafish Development	PLoS One	2008	3(4)	e2029	
ZDB-PUB-080512-5	18461179	Suzawa, M., and Ingraham, H.A.	The herbicide atrazine activates endocrine gene networks via non-steroidal NR5A nuclear receptors in fish and mammalian cells	PLoS One	2008	3(5)	e2117	
ZDB-PUB-080801-15	18665241	Locke, J.B., Aziz, R.K., Vicknair, M.R., Nizet, V., and Buchanan, J.T.	Streptococcus iniae M-like protein contributes to virulence in fish and is a target for live attenuated vaccine development	PLoS One	2008	3(7)	e2824	
ZDB-PUB-080908-12	18769669	Mastroianni, M., Watanabe, K., White, T.B., Zhuang, F., Vernon, J., Matsuura, M., Wallingford, J., and Lambowitz, A.M.	Group II Intron-Based Gene Targeting Reactions in Eukaryotes	PLoS One	2008	3(9)	e3121	
ZDB-PUB-080908-9	18769480	Kamei, H., Lu, L., Jiao, S., Li, Y., Gyrup, C., Laursen, L.S., Oxvig, C., Zhou, J., and Duan, C.	Duplication and Diversification of the Hypoxia-Inducible IGFBP-1 Gene in Zebrafish	PLoS One	2008	3(8)	e3091	
ZDB-PUB-090106-34	19116654	Hashiguchi, Y., Furuta, Y., and Nishida, M.	Evolutionary patterns and selective pressures of odorant/pheromone receptor gene families in teleost fishes	PLoS One	2008	3(12)	e4083	
ZDB-PUB-090204-31	19183805	Hohn, C., Lee, S.R., Pinchuk, L.M., and Petrie-Hanson, L.	Zebrafish kidney phagocytes utilize macropinocytosis and Ca+-dependent endocytic mechanisms	PLoS One	2009	4(2)	e4314	
ZDB-PUB-090217-1	19190757	Hammond, K.L., Loynes, H.E., Mowbray, C., Runke, G., Hammerschmidt, M., Mullins, M.C., Hildreth, V., Chaudhry, B., and Whitfield, T.T.	A late role for bmp2b in the morphogenesis of semicircular canal ducts in the zebrafish inner ear	PLoS One	2009	4(2)	e4368	
ZDB-PUB-090324-18	19300512	Fox, B.A., Sheppard, P.O., and O'Hara, P.J.	The role of genomic data in the discovery, annotation and evolutionary interpretation of the interferon-lambda family	PLoS One	2009	4(3)	e4933	
ZDB-PUB-090616-38	19503807	Bouzaffour, M., Dufourcq, P., Lecaudey, V., Haas, P., and Vriz, S.	Fgf and Sdf-1 pathways interact during zebrafish fin regeneration	PLoS One	2009	4(6)	e5824	
ZDB-PUB-090616-54	19517013	Tee, J.M., van Rooijen, C., Boonen, R., and Zivkovic, D.	Regulation of slow and fast muscle myofibrillogenesis by Wnt/beta-catenin and myostatin signaling	PLoS One	2009	4(6)	e5880	
ZDB-PUB-090716-7	19584915	Huang, X., Hui, M.N., Liu, Y., Yuen, D.S., Zhang, Y., Chan, W.Y., Lin, H.R., Cheng, S.H., and Cheng, C.H.	Discovery of a novel prolactin in non-mammalian vertebrates: evolutionary perspectives and its involvement in teleost retina development	PLoS One	2009	4(7)	e6163	
ZDB-PUB-090814-13	19672293	Sun, X., Hoage, T., Bai, P., Ding, Y., Chen, Z., Zhang, R., Huang, W., Jahangir, A., Paw, B., Li, Y.G., and Xu, X.	Cardiac hypertrophy involves both myocyte hypertrophy and hyperplasia in anemic zebrafish	PLoS One	2009	4(8)	e6596	
ZDB-PUB-090921-24	19759899	Zou, S., Kamei, H., Modi, Z., and Duan, C.	Zebrafish IGF genes: gene duplication, conservation and divergence, and novel roles in midline and notochord development	PLoS One	2009	4(9)	e7026	
ZDB-PUB-091023-58	19838299	Takeda, Y., Mishima, Y., Fujiwara, T., Sakamoto, H., and Inoue, K.	DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafish	PLoS One	2009	4(10)	e7513	
ZDB-PUB-091120-26	19893630	Lund, T.C., Glass, T.J., Tolar, J., and Blazar, B.R.	Expression of telomerase and telomere length are unaffected by either age or limb regeneration in Danio rerio	PLoS One	2009	4(11)	e7688	
ZDB-PUB-091120-75	19924235	Alvarez, Y., Astudillo, O., Jensen, L., Reynolds, A.L., Waghorne, N., Brazil, D.P., Cao, Y., O'Connor, J.J., and Kennedy, B.N.	Selective Inhibition of Retinal Angiogenesis by Targeting PI3 Kinase	PLoS One	2009	4(11)	e7867	
ZDB-PUB-091121-1	19924226	Shepard, S., McCreary, M., and Fedorov, A.	The Peculiarities of Large Intron Splicing in Animals	PLoS One	2009	4(11)	e7853	
ZDB-PUB-091215-55	19997509	Edeling, M.A., Sanker, S., Shima, T., Umasankar, P.K., Höning, S., Kim, H.Y., Davidson, L.A., Watkins, S.C., Tsang, M., Owen, D.J., and Traub, L.M.	Structural requirements for PACSIN/Syndapin operation during zebrafish embryonic notochord development	PLoS One	2009	4(12)	e8150	
ZDB-PUB-100112-16	20049323	Codina, M., Li, J., Gutiérrez, J., Kao, J.P., and Du, S.J.	Loss of Smyhc1 or Hsp90alpha1 function results in different effects on myofibril organization in skeletal muscles of zebrafish embryos	PLoS One	2010	5(1)	e8416	
ZDB-PUB-100126-17	20098618	Schütte, A., Hedrich, J., Stöcker, W., and Becker-Pauly, C.	Let It Flow: Morpholino Knockdown in Zebrafish Embryos Reveals a Pro-Angiogenic Effect of the Metalloprotease Meprin alpha(2)	PLoS One	2010	5(1)	e8835	
ZDB-PUB-100202-9	20107509	Jing, L., Gordon, L.R., Shtibin, E., and Granato, M.	Temporal and spatial requirements of unplugged/MuSK function during zebrafish neuromuscular development	PLoS One	2010	5(1)	e8843	
ZDB-PUB-100302-16	20186339	Zuccolo, J., Bau, J., Childs, S.J., Goss, G.G., Sensen, C.W., and Deans, J.P.	Phylogenetic Analysis of the MS4A and TMEM176 Gene Families	PLoS One	2010	5(2)	e9369	
ZDB-PUB-080306-32	18307296	Lemeer, S., Pinkse, M.W., Mohammed, S., van Breukelen, B., den Hertog, J., Slijper, M., and Heck, A.J.	Online Automated in Vivo Zebrafish Phosphoproteomics: From Large-Scale Analysis Down to a Single Embryo	Journal of Proteome Research	2008	7(4)	1555-1564	
ZDB-PUB-070122-17	17203970	Wang, N., Mackenzie, L., Souza, A.G., Zhong, H., Goss, G., and Li, L.	Proteome Profile of Cytosolic Component of Zebrafish Liver Generated by LC-ESI MS/MS Combined with Trypsin Digestion and Microwave-Assisted Acid Hydrolysis	Journal of Proteome Research	2007	6(1)	263-272	
ZDB-PUB-070203-2	none	De Graaf, F., Van Raamsdonk, W., Hasselbaink, H., Diegenbach, P.C., Mos,W., Smit-Onel, M.J., Van Asselt, E., and Heuts, B.	Enzyme histochemistry of the spinal cord and the myotomal musculature in the teleost fish Brachydanio rerio. Effects of endurance training and prolonged reduced locomotory activity	Z. Mikrosk. Anat. Forsch.	1990	104	S593-S606	
ZDB-PUB-070210-11	17230219	Matsui, T., Raya, A., Callol-Massot, C., Kawakami, Y., Oishi, I., Rodriguez-Esteban, C., and Belmonte, J.C.	miles-apart-Mediated regulation of cell-fibronectin interaction and myocardial migration in zebrafish	Nature Clinical Practice Cardiovascular Medicine	2007	4(1)	S77-S82	
ZDB-PUB-070210-40	17256740	Shackel, N.	Zebrafish and the understanding of liver development: The emerging role of the wnt pathway in liver biology	Hepatology	2007	45(2)	540-541	
ZDB-PUB-090112-7	19127516	Passeri, M.J., Cinaroglu, A., Gao, C., and Sadler, K.C.	Hepatic steatosis in response to acute alcohol exposure in zebrafish requires sterol regulatory element binding protein activation	Hepatology	2009	49(2)	443-452	
ZDB-PUB-091215-36	19957374	Negishi, T., Nagai, Y., Asaoka, Y., Ohno, M., Namae, M., Mitani, H., Sasaki, T., Shimizu, N., Terai, S., Sakaida, I., Kondoh, H., Katada, T., Furutani-Seiki, M., and Nishina, H.	Retinoic acid signaling positively regulates liver specification by inducing wnt2bb gene expression in medaka	Hepatology	2009	\ 	\ 	
ZDB-PUB-070212-22	17271074	Forouhar, A., Hove, J., Calvert, C., Flores, J., Jadvar, H.,and Gharib, M.	Electrocardiographic characterization of embryonic zebrafish	Conf. Proc. IEEE Eng. Med. Biol. Soc.	2004	5(1)	3615-3617	
ZDB-PUB-071125-6	18003388	Zanella, C., Rizzi, B., Melani, C., Campana, M., Bourgine, P., Mikula, K., Peyriéras, N., and Sarti, A.	Segmentation of cells from 3-d confocal images of live zebrafish embryo	Conf. Proc. IEEE Eng. Med. Biol. Soc.	2007	1(1)	6027-6030	
ZDB-PUB-091215-46	19964254	Pastor, D., Luengo-Oroz, M.A., Lombardot, B., Gonzalvez, I., Duloquin, L., Savy, T., Bourgine, P., Peyrieras, N., and Santos, A.	Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements	Conf. Proc. IEEE Eng. Med. Biol. Soc.	2009	1	970-973	
ZDB-PUB-070212-23	17271455	Kim, D.H., Sun, Y., Yun, S., Kim, B., Nam Hwang, C., Nelson, B., and Ho Lee, S.	Mechanical property characterization of the zebrafish embryo chorion	Conf. Proc. IEEE Eng. Med. Biol. Soc.	2004	7(1)	5061-5064	
ZDB-PUB-071125-7	18003450	Rizzi, B., Campana, M., Zanella, C., Melani, C., Cunderlik, R., Kriva, Z., Bourgine, P., Mikula, K., Peyriéras, N., and Sarti, A.	3-d zebrafish embryo image filtering by nonlinear partial differential equations	Conf. Proc. IEEE Eng. Med. Biol. Soc.	2007	1(1)	6251-6254	
ZDB-PUB-091215-45	19963501	Castro, C., Luengo-Oroz, M.A., Desnoulez, S., Duloquin, L., Fernandez-de-Manuel, L., Montagna, S., Ledesma-Carbayo, M.J., Bourgine, P., Peyrieras, N., and Santos, A.	An automatic quantification and registration strategy to create a gene expression atlas of zebrafish embryogenesis	Conf. Proc. IEEE Eng. Med. Biol. Soc.	2009	1	1469-1472	
ZDB-PUB-071125-5	18002285	Melani, C., Campana, M., Lombardot, B., Rizzi, B., Veronesi, F., Zanella, C., Bourgine, P., Mikula, K., Peyriéras, N., and Sarti, A.	Cells tracking in a live zebrafish embryo	Conf. Proc. IEEE Eng. Med. Biol. Soc.	2007	1(1)	1631-1634	
ZDB-PUB-070303-19	17305423	Cinquin, O.	Repressor Dimerization in the Zebrafish Somitogenesis Clock	PLoS Computational Biology	2007	3(2)	e32	
ZDB-PUB-070330-38	17389161	Ho, Y.L., Lin, Y.H., Tsai, I.J., Hsieh, F.J., and Tsai, H.J.	In Vivo Assessment of Cardiac Morphology and Function in Heart-specific Green Fluorescent Zebrafish	Journal of the Formosan Medical Association	2007	106(3)	181-186	
ZDB-PUB-070513-10	17476122	Goldsmith, P., Golder, Z., Hunt, J., Berghmans, S., Jones, D., Stables, J.P., Murphree, L., Howden, D., Newton, P.E., and Richards, F.M.	GBR12909 Possesses Anticonvulsant Activity in Zebrafish and Rodent Models of Generalized Epilepsy but Cardiac Ion Channel Effects Limit Its Clinical Utility	Pharmacology	2007	79(4)	250-258	
ZDB-PUB-070523-14	17504209	Hsu, C.H., Wen, Z.H., Lin, C.S., and Chakraborty, C.	The zebrafish model: use in studying cellular mechanisms for a spectrum of clinical disease entities	Current Neurovascular Research	2007	4(2)	111-120	
ZDB-PUB-070523-26	17516491	Canaple, L., Beuf, O., Armenean, M., Hasserodt, J., Samarut, J., and Janier, M.	Fast screening of paramagnetic molecules in zebrafish embryos by MRI	NMR in Biomedicine	2008	21(2)	129-137	
ZDB-PUB-091215-22	19950106	Ullmann, J.F., Cowin, G., Kurniawan, N.D., and Collin, S.P.	Magnetic resonance histology of the adult zebrafish brain: optimization of fixation and gadolinium contrast enhancement	NMR in Biomedicine	2009	\ 	\ 	
ZDB-PUB-070711-38	17615558	Kohli, V., Robles, V., Cancela, M.L., Acker, J.P., Waskiewicz, A.J., and Elezzabi, A.Y.	An alternative method for delivering exogenous material into developing zebrafish embryos	Biotechnology and Bioengineering	2007	98(6)	1230-1241	
ZDB-PUB-070726-22	17637246	Sun, S.N., Gui, Y.H., Wang, Y.X., Qian, L.X., Jiang, Q., Liu, D., and Song, H.Y.	Effect of dihydrofolate reductase gene knock-down on the expression of heart and neural crest derivatives expressed transcript 2 in zebrafish cardiac development	Chinese Medical Journal	2007	120(13)	1166-1171	
ZDB-PUB-070806-10	17650427	Chong, M., Gui, Y.H., Cheng, L., and Lu, D.R.	Establishment of model of congenital heart disease with Tbx2 gene knockdown: experiment with zebrafish	Zhonghua Yi Xue Za Zhi	2007	87(14)	991-994	
ZDB-PUB-070813-1	17675125	Curran, J.E., and Woodruff, R.I.	Passage of 17kDa calmodulin through gap junctions of three vertebrate species	Tissue & Cell	2007	39(5)	303-309	
ZDB-PUB-090309-8	19251294	Chapman, G.B., Tarboush, R., Eagles, D.A., and Connaughton, V.P.	A light and transmission electron microscope study of the distribution and ultrastructural features of peripheral nerve processes in the extra-retinal layers of the zebrafish eye	Tissue & Cell	2009	41(4)	286-298	
ZDB-PUB-070813-33	17683078	Gibb, A.C., Liu, C., and Swanson, B.O.	Heterochrony and the development of the escape response: prehatching movements in the rainbow trout Oncorhynchus mykiss	Journal of Experimental Zoology Part A: Ecological Genetics and Physiology	2007	307(10)	556-567	
ZDB-PUB-080915-20	18785212	Wu, S., Storey, J.M., and Storey KB.	Phosphoglycerate kinase 1 expression responds to freezing, anoxia, and dehydration stresses in the freeze tolerant wood frog, Rana sylvatica	Journal of Experimental Zoology Part A: Ecological Genetics and Physiology	2009	311A(1)	57-67	
ZDB-PUB-070827-5	17706063	Zhang, L.F., Gui, Y.H., Zhong, T., Wang, Y.X., Qian, L.X., Dong, Y.X., Jiang, Q., Sun, S.N., and Song, H.Y.	Effect of external retinoic acid on Tbx1 gene during zebrafish embryogenesis	Zhonghua Er Ke Za Zhi	2007	45(4)	267-271	
ZDB-PUB-090106-8	19099761	Gong, C.H., Li, J., and Yang, S.W.	Effect of ethanol on cardiac looping of zebrafish embryos	Zhonghua Er Ke Za Zhi	2008	46(5)	385-387	
ZDB-PUB-081022-6	18845445	Dong, Q., Todd Monroe, W., Tiersch, T.R., and Svoboda, K.R.	UVA-induced photo recovery during early zebrafish embryogenesis	J. Photochem. Photobiol. B	2008	93(3)	162-171	
ZDB-PUB-070827-26	17716904	Dong, Q., Svoboda, K., Tiersch, T.R., and Todd Monroe, W.	Photobiological effects of UVA and UVB light in zebrafish embryos: Evidence for a competent photorepair system	J. Photochem. Photobiol. B	2007	88(2-3)	137-146	
ZDB-PUB-070907-31	17768598	Bielenberg, D.R., and Klagsbrun, M.	Targeting endothelial and tumor cells with semaphorins	Cancer and Metastasis Reviews	2007	26(3-4)	421-431	
ZDB-PUB-090828-4	19693513	Lemoine, C.M., Craig, P.M., Dhekney, K., Kim, J.J., and McClelland, G.B.	Temporal and spatial patterns of gene expression in skeletal muscles in response to swim training in adult zebrafish (Danio rerio)	Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology	2010	180(1)	151-160	
ZDB-PUB-070912-8	17828398	Marques, I.J., Leito, J.T., Spaink, H.P., Testerink, J., Jaspers, R.T., Witte, F., van den Berg, S., and Bagowski, C.P.	Transcriptome analysis of the response to chronic constant hypoxia in zebrafish hearts	Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology	2008	178(1)	77-92	
ZDB-PUB-090526-3	19447169	Selderslaghs, I.W., Van Rompay, A.R., De Coen, W., and Witters, H.E.	Development of a screening assay to identify teratogenic and embryotoxic chemicals using the zebrafish embryo	Reproductive Toxicology	2009	28(3)	308-320	
ZDB-PUB-070924-6	17884332	Heiden, T.C., Struble, C.A., Rise, M.L., Hessner, M.J., Hutz, R.J., and Carvan, M.J. 3rd.	Molecular targets of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) within the zebrafish ovary: Insights into TCDD-induced endocrine disruption and reproductive toxicity	Reproductive Toxicology	2008	25(1)	47-57	
ZDB-PUB-090505-4	19402509	Wang, J.Y., Bian, H.F., Jin, X.Q., and Sheng, L.X.	Stress and biological response of naphthalene on the antioxidant defense system in visceral mass of zebrafish (Danio rerio)	Huan Jing Ke Xue.	2009	30(2)	516-521	
ZDB-PUB-090814-4	19662859	Ye, L., Wu, L.L., Jiang, Y.X., Zhang, C.J., and Chen, L.	Toxicological study of PFOS/PFOA to zebrafish (Danio rerio) embryos	Huan Jing Ke Xue.	2009	30(6)	1727-1732	
ZDB-PUB-071016-10	17926411	Liu, H.L., Liu, X.H., Wang, X.Y., Wang, X.R., and Yu, H.X.	Toxicity of BPA and TBBPA to Daphnia magna and zebrafish Brachydanio rerio	Huan Jing Ke Xue.	2007	28(8)	1784-1787	
ZDB-PUB-090505-5	19402510	Duan, Z.H., Zhu, L., and Gong, Z.Y.	Bioaccumulation and toxicity test of diethylstilbestrol to zebrafish (Danio rerio) embryo	Huan Jing Ke Xue.	2009	30(2)	522-526	
ZDB-PUB-090629-19	19545030	Chen, Z.Z., Zhu, L., Yao, K., Wang, X.J., and Ding, J.N.	Interaction between calcium and lead affects the toxicity to embryo of zebrafish (Danio rerio)	Huan Jing Ke Xue.	2009	30(4)	1205-1209	
ZDB-PUB-100119-1	20063758	Wu, Z.Y., Hu, P., Zhao, Q.S., and Yin, D.Q.	Exploration of developmental toxicity mechanism of pentachlorophenol using cDNA microarray	Huan Jing Ke Xue.	2009	30(11)	3382-3387	
ZDB-PUB-071029-15	17963101	Hamad, A., Kluk, M., Fox, J., Park, M., and Turner, J.E.	The Effects of Aromatase Inhibitors and Selective Estrogen Receptor Modulators on Eye Development in the Zebrafish (Danio rerio)	Current Eye Research	2007	32(10)	819-827	
ZDB-PUB-080218-25	18214743	Chen, C.C., Yeh, L.K., Liu, C.Y., Kao, W.W., Samples, J.R., Lin, S.J., Hu, F.R., and Wang, I.J.	Morphological Differences between the Trabecular Meshworks of Zebrafish and Mammals	Current Eye Research	2008	33(1)	59-72	
ZDB-PUB-071118-11	17968670	Burket, C.T., Montgomery, J.E., Thummel, R., Kassen, S.C., Lafave, M.C., Langenau, D.M., Zon, L.I., and Hyde, D.R.	Generation and characterization of transgenic zebrafish lines using different ubiquitous promoters	Transgenic Research	2008	17(2)	265-279	
ZDB-PUB-090505-22	19412740	Chen, Y.H., Wang, Y.H., Yu, T.H., Wu, H.J., and Pai, C.W.	Transgenic zebrafish line with over-expression of Hedgehog on the skin: a useful tool to screen Hedgehog-inhibiting compounds	Transgenic Research	2009	18(6)	855-864	
ZDB-PUB-091221-17	20012190	Pai, C.W., and Chen, Y.H.	Transgenic expression of prothymosin alpha on zebrafish epidermal cells promotes proliferation and attenuates UVB-induced apoptosis	Transgenic Research	2009	\ 	\ 	
ZDB-PUB-090302-2	19225901	Boonanuntanasarn, S., Panyim, S., and Yoshizaki, G.	Usage of putative zebrafish U6 promoters to express shRNA in Nile tilapia and shrimp cell extracts	Transgenic Research	2009	18(3)	323-325	
ZDB-PUB-090407-22	19347596	Haga, Y., Dominique, V.J. 3rd, and Du, S.J.	Analyzing notochord segmentation and intervertebral disc formation using the twhh:gfp transgenic zebrafish model	Transgenic Research	2009	18(5)	669-683	
ZDB-PUB-090814-3	19662507	Chatterjee, S., Min, L., Karuturi, R.K., and Lufkin, T.	The role of post-transcriptional RNA processing and plasmid vector sequences on transient transgene expression in zebrafish	Transgenic Research	2010	19(2)	299-304	
ZDB-PUB-071129-11	18041812	Okamoto, H.	Yin-yang ways of controlling gene expression are now in our hands	ACS Chemical Biology	2007	2(10)	646-648	
ZDB-PUB-090413-4	19351181	Ghosh, B., Benyumov, A.O., Ghosh, P., Jia, Y., Avdulov, S., Dahlberg, P.S., Peterson, M., Smith, K., Polunovsky, V.A., Bitterman, P.B., and Wagner, C.R.	Non-Toxic Chemical Interdiction of the Epithelial-to-Mesenchymal Transition by Targeting Cap-dependent Translation	ACS Chemical Biology	2009	4(5)	367-377	
ZDB-PUB-100105-3	20020776	Hao, J., Ho, J.N., Lewis, J.A., Karim, K.A., Daniels, R.N., Gentry, P.R., Hopkins, C., Lindsley, C., and Hong, C.C.	In Vivo Structure Activity Relationship Study of Dorsomorphin Analogs Identifies Selective VEGF and BMP Inhibitors	ACS Chemical Biology	2010	5(2)	245-253	
ZDB-PUB-071129-15	15922016	Krause, C.D., and Pestka, S.	Evolution of the Class 2 cytokines and receptors, and discovery of new friends and relatives	Pharmacology & Therapeutics	2005	106(3)	299-346	
ZDB-PUB-071210-41	18062245	Wang, Y., Han, Y., Li, Y., Chen, J.X., and Zhang, X.H.	Isolation of Photobacterium damselae subsp. piscicida from diseased tongue sole (Cynoglossus semilaevis Gunther) in China	Wei Sheng Wu Xue Bao	2007	47(5)	763-768	
ZDB-PUB-071227-5	18093234	Spence, R., Gerlach, G., Lawrence, C., and Smith, C.	The behaviour and ecology of the zebrafish, Danio rerio	Biol. Rev. Camb. Philos. Soc.	2007	83(1)	13-34	
ZDB-PUB-080218-12	18202881	Prohaska, S.J., and Stadler, P.F.	The duplication of the Hox gene clusters in teleost fishes	Theory Biosci.	2004	123(1)	89-110	
ZDB-PUB-080227-14	18261223	Nakamura, T.Y., and Coetzee, W.A.	Functional and pharmacological characterization of a Shal-related K+ channel subunit in Zebrafish	BMC Physiology	2008	8	2	
ZDB-PUB-100309-16	20200501	Gerner, M., Haribaskar, R., Pütz, M., Czerwitzki, J., Walz, G., and Schäfer, T.	The retinitis pigmentosa GTPase regulator interacting protein 1 (RPGRIP1) links RPGR to the nephronophthisis protein network	Kidney International	2010	\ 	\ 	
ZDB-PUB-080415-2	18397498	Kim, Y., Lee, J., and Lee, C.	In silico Comparative Analysis of DNA and Amino Acid Sequences for Prion Protein Gene	Transboundary and Emerging diseases	2008	55(2)	105-114	
ZDB-PUB-080422-12	18423508	Xu, X., Zhang, L., Weng, S., Huang, Z., Lu, J., Lan, D., Zhong, X., Yu, X., Xu, A., and He, J.	A zebrafish (Danio rerio) model of infectious spleen and kidney necrosis virus (ISKNV) infection	Virology	2008	376(1)	1-12	
ZDB-PUB-080513-3	18444965	Brito, F.C., and Kos, L.	Timeline and distribution of melanocyte precursors in the mouse heart	Pigment cell & melanoma research	2008	21(4)	464-470	
ZDB-PUB-080515-14	18476910	Hatamoto, K., and Shingyoji, C.	Cyclical training enhances the melanophore responses of zebrafish to background colours	Pigment cell & melanoma research	2008	21(3)	397-406	
ZDB-PUB-081218-10	19067972	Takahashi, G., and Kondo, S.	Melanophores in the stripes of adult zebrafish do not have the nature to gather, but disperse when they have the space to move	Pigment cell & melanoma research	2008	21(6)	677-686	
ZDB-PUB-090814-1	19659755	Braasch, I., Liedtke, D., Volff, J.N., and Schartl, M.	Pigmentary function and evolution of tyrp1 gene duplicates in fish	Pigment cell & melanoma research	2009	22(6)	839-850	
ZDB-PUB-080515-11	18475005	Rodriguez, M., and Jeraj, R.	Design of a radiation facility for very small specimens used in radiobiology studies	Physics in Medicine and Biology	2008	53(11)	2953-2970	
ZDB-PUB-080515-12	18475008	Rodriguez, M., and Jeraj, R.	Characterization of a novel micro-irradiator using Monte Carlo radiation transport simulations	Physics in Medicine and Biology	2008	53(11)	2971-2983	
ZDB-PUB-080519-10	18483567	Han, L., and Zhao, Z.	Comparative analysis of CpG islands in four fish genomes	Comparative and Functional Genomics	2008		565631	
ZDB-PUB-080616-1	18516253	Hutz, R.J., Carvan, M.J., Baldridge, M.G., Conley, L.K., and Heiden, T.K.	Environmental toxicants and effects on female reproductive function	Trends in reproductive biology	2006	2	1-11	
ZDB-PUB-080616-20	18544507	Gerlach, G., Hodgins-Davis, A., Avolio, C., and Schunter, C.	Kin recognition in zebrafish: a 24-hour window for olfactory imprinting	Proceedings. Biological sciences / The Royal Society	2008	275(1647)	2165-2170	
ZDB-PUB-080722-17	18633686	Delgado, L., and Schmachtenberg, O.	Immunohistochemical Localization of GABA, GAD65, and the Receptor Subunits GABA(Aalpha1) and GABA (B1) in the Zebrafish Cerebellum	Cerebellum	2008	7(3)	444-450	
ZDB-PUB-080801-9	18662094	Lahnsteiner, F.	The sensitivity and reproducibility of the zebrafish (Danio rerio) embryo test for the screening of waste water quality and for testing the toxicity of chemicals	Alternatives to laboratory animals : ATLA	2008	36(3)	299-311	
ZDB-PUB-080825-22	18681238	Sisman, T., Geyikoglu, F., and Atamanalp, M.	Early life-stage toxicity in zebrafish (Danio rerio) following embryonal exposure to selected polychlorinated biphenyls	Toxicology and industrial health	2007	23(9)	529-536	
ZDB-PUB-080826-20	18703838	Elling, R.A., Fucini, R.V., and Romanowski, M.J.	Structures of the wild-type and activated catalytic domains of Brachydanio rerio Polo-like kinase 1 (Plk1): changes in the active-site conformation and interactions with ligands	Acta crystallographica. Section D, Biological crystallography	2008	64(Pt 9)	909-918	
ZDB-PUB-080826-46	15686953	Devon, R.S., Schwab, C., Topp, J.D., Orban, P.C., Yang, Y.Z., Pape, T.D., Helm, J.R., Davidson, T.L., Rogers, D.A., Gros-Louis, F., Rouleau, G., Horazdovsky, B.F., Leavitt, B.R., and Hayden, M.R.	Cross-species characterization of the ALS2 gene and analysis of its pattern of expression in development and adulthood	Neurobiology of disease	2005	18(2)	243-257	
ZDB-PUB-090602-1	19471023	James, R.G., Biechele, T.L., Conrad, W.H., Camp, N.D., Fass, D.M., Major, M.B., Sommer, K., Yi, X., Roberts, B.S., Cleary, M.A., Arthur, W.T., MacCoss, M., Rawlings, D.J., Haggarty, S.J., and Moon, R.T.	Bruton's tyrosine kinase revealed as a negative regulator of Wnt-beta-catenin signaling	Science signaling	2009	2(72)	ra25	
ZDB-PUB-081008-1	18827223	Evangelista, M., Lim, T.Y., Lee, J., Parker, L., Ashique, A., Peterson, A.S., Ye, W., Davis, D.P., and de Sauvage, F.J.	Kinome siRNA screen identifies regulators of ciliogenesis and hedgehog signal transduction	Science signaling	2008	1(39)	ra7	
ZDB-PUB-081013-1	none	Schötz, E.M., Burdine, R.D., Jülicher, F., Steinberg, M.S., Heisenberg, C.P., and Foty, R.A.	Quantitative differences in tissue surface tension influence zebrafish germ layer positioning	HFSP Journal	2008	2(1)	42-56	
ZDB-PUB-081022-24	18850864	Mazzitello, K.I., Arizmendi, C.M., Hentschel, H.G.	Converting genetic network oscillations into somite spatial patterns	Physical review. E, Statistical, nonlinear, and soft matter physics	2008			
ZDB-PUB-081029-25	18953902	Zhang, Y.Q., Wang, Y.X., Xu, G.Z., Song, H.Y., and Wang, W.J.	Influence of CRX gene on development of photoreceptors in zebrafish	Zhonghua yan ke za zhi	2008	44(5)	448-454	
ZDB-PUB-081114-5	18996177	He, M.F., Liu, L., Ge, W., Shaw, P.C., Jiang, R., Wu, L.W., and But, P.P.	Antiangiogenic activity of Tripterygium wilfordii and its terpenoids	Journal of ethnopharmacology	2009	121(1)	61-68	
ZDB-PUB-081217-19	19061946	He, Z.H., He, M.F., Ma, S.C., and But, P.P.	Anti-angiogenic effects of rhubarb and its anthranquione derivatives	Journal of ethnopharmacology	2009	121(2)	313-317	
ZDB-PUB-081203-4	19027276	Bird, N.C., and Hernandez, L.P.	Building an evolutionary innovation: Differential growth in the modified vertebral elements of the zebrafish Weberian apparatus	Zoology (Jena, Germany)	2009	112(2)	97-112	
ZDB-PUB-090112-19	19132118	Santoriello, C., Deflorian, G., Pezzimenti, F., Kawakami, K., Lanfrancone, L., d'Adda di Fagagna, F., and Mione, M.	Expression of H-RASV12 in a zebrafish model of Costello syndrome causes cellular senescence in adult proliferating cells	Disease models & mechanisms	2009	2(1-2)	56-67	
ZDB-PUB-090601-7	19470611	Michailidou, C., Jones, M., Walker, P., Kamarashev, J., Kelly, A., and Hurlstone, A.F.	Dissecting the roles of Raf- and PI3K-signalling pathways in melanoma formation and progression in a zebrafish model	Disease models & mechanisms	2009	2(7-8)	399-411	
ZDB-PUB-100211-27	20142328	Alvarez, Y., Chen, K., Reynolds, A.L., Waghorne, N., O'Connor, J.J., and Kennedy, B.N.	Predominant cone photoreceptor dysfunction in a hyperglycaemic model of non-proliferative diabetic retinopathy	Disease models & mechanisms	2010	\ 	\ 	
ZDB-PUB-090929-11	19779068	Sieger, D., Stein, C., Neifer, D., van der Sar, A.M., and Leptin, M.	The role of gamma interferon in innate immunity in the zebrafish embryo	Disease models & mechanisms	2009	2(11-12)	571-581	
ZDB-PUB-100119-13	20075382	Parant, J.M., George, S.A., Holden, J.A., and Yost, H.J.	Genetic modeling of Li-Fraumeni syndrome in zebrafish	Disease models & mechanisms	2010	3(1-2)	45-56	
ZDB-PUB-090105-7	19093037	Gore, A.V., Lampugnani, M.G., Dye, L., Dejana, E., and Weinstein, B.M.	Combinatorial interaction between CCM pathway genes precipitates hemorrhagic stroke	Disease models & mechanisms	2008	1(4-5)	275-281	
ZDB-PUB-090112-20	19132125	Dutton, K., Abbas, L., Spencer, J., Brannon, C., Mowbray, C., Nikaido, M., Kelsh, R.N., and Whitfield, T.T.	A zebrafish model for Waardenburg syndrome type IV reveals diverse roles for Sox10 in the otic vesicle	Disease models & mechanisms	2009	2(1-2)	68-83	
ZDB-PUB-090622-9	19533668	David, A., and Pancharatna, K.	Effects of acetaminophen (paracetamol) in the embryonic development of zebrafish, Danio rerio	Journal of applied toxicology	2009	29(7)	597-602	
ZDB-PUB-081217-14	19058295	Kim, D.J., Seok, S.H., Baek, M.W., Lee, H.Y., Na, Y.R., Park, S.H., Lee, H.K., Dutta, N.K., Kawakami, K., and Park, J.H.	Benomyl induction of brain aromatase and toxic effects in the zebrafish embryo	Journal of applied toxicology	2009	29(4)	289-294	
ZDB-PUB-090106-37	19116950	Ricatti, M.J., Alfie, L.D., Lavoie, E.G., Sévigny, J., Schwarzbaum, P.J., and Faillace, M.P.	Immunocytochemical localization of NTPDases1 and 2 in the neural retina of mouse and zebrafish	Synapse	2009	63(4)	291-307	
ZDB-PUB-090112-8	19127769	Zhang, M.C., Lv, Y., Qi, Y.T., Zhang, Z., Fu, X.N., Yuan, C.G., and Lai, L.H.	Knockdown and overexpression of miR-219 lead to embryonic defects in zebrafish development	Fen zi xi bao sheng wu xue bao = Journal of molecular cell biology	2008	41(5)	341-348	
ZDB-PUB-090716-6	19584432	Chen, M., Martins, R.N., and Lardelli, M.	Complex Splicing and Neural Expression of Duplicated Tau Genes in Zebrafish Embryos	Journal of Alzheimer's disease : JAD	2009	18(2)	305-317	
ZDB-PUB-090123-17	19158429	Newman, M., Tucker, B., Nornes, S., Ward, A., and Lardelli, M.	Altering presenilin gene activity in zebrafish embryos causes changes in expression of genes with potential involvement in Alzheimer's disease pathogenesis	Journal of Alzheimer's disease : JAD	2009	16(1)	133-147	
ZDB-PUB-090204-32	19184407	Li, J.Z., Zhou, Y.P., Zhen, Y., Xu, Y., Cheng, P.X., Wang, H.N., and Deng, F.J.	Cloning and Characterization of the SSB-1 and SSB-4 Genes Expressed in Zebrafish Gonads	Biochemical genetics	2009	47(3-4)	179-190	
ZDB-PUB-090210-9	17267244	Cameron, I.L., Short, N.J., and Fullerton, G.D.	A simple centrifugal dehydration force method to characterize water compartments in fresh and post-mortem fish muscle	Cell biology international	2007	31(5)	516-520	
ZDB-PUB-090217-25	19206304	Nallathamby, P.D., Lee, K.J., and Xu, X.H.	Design of stable and uniform single nanoparticle photonics for in vivo dynamics imaging of nanoenvironments of zebrafish embryonic fluids	ACS nano	2008	2(7)	1371-1380	
ZDB-PUB-090716-15	19591446	Reed, J., Ramakrishnan, S., Schmit, J., and Gimzewski, J.K.	Mechanical Interferometry of Nanoscale Motion and Local Mechanical Properties of Living Zebrafish Embryos	ACS nano	2009	3(8)	2090-2094	
ZDB-PUB-090217-26	19206556	Li, Y.Y., Cheng, H., Zhang, Z.G., Wang, C., Zhu, J.L., Liang, Y., Zhang, K.L., Cheng, S.X., Zhang, X.Z., and Zhuo, R.X.	Cellular internalization and in vivo tracking of thermosensitive luminescent micelles based on luminescent lanthanide chelate	ACS nano	2008	2(1)	125-133	
ZDB-PUB-100105-35	20043662	Chaudhuri, P., Harfouche, R., Soni, S., Hentschel, D.M., and Sengupta, S.	Shape Effect of Carbon Nanovectors on Angiogenesis	ACS nano	2010	4(1)	574-582	
ZDB-PUB-090302-29	19245754	Koerber, A.S., and Kalishman, J.	Preparing for a Semiannual IACUC Inspection of a Satellite Zebrafish (Danio rerio) Facility	Journal of the American Association for Laboratory Animal Science : JAALAS	2009	48(1)	65-75	
ZDB-PUB-091204-15	19930828	Wilson, J.M., Bunte, R.M., and Carty, A.J.	Evaluation of rapid cooling and tricaine methanesulfonate (MS222) as methods of euthanasia in zebrafish (Danio rerio)	Journal of the American Association for Laboratory Animal Science : JAALAS	2009	48(6)	785-789	
ZDB-PUB-090319-9	19287195	Kim, S.Y., Hur, W., Choi, J.E., Kim, D., Wang, J.S., Yoon, H.Y., Piao, L.S., and Yoon, S.K.	Functional characterization of human oncoprotein gankyrin in Zebrafish	Experimental & molecular medicine	2009	41(1)	8-16	
ZDB-PUB-090407-5	19333438	Ghazali, I.E., Saqrane, S., Carvalho, A.P., Ouahid, Y., Oudra, B., Del Campo, F.F., and Vasconcelos, V.	Compensatory Growth Induced in Zebrafish Larvae after Pre-Exposure to a Microcystis aeruginosa Natural Bloom Extract Containing Microcystins	International Journal of Molecular Sciences	2009	10(1)	133-146	
ZDB-PUB-100202-15	20111688	Tsai, H.K., Huang, P.Y., Kao, C.Y., and Wang, D.	Co-Expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome	International Journal of Molecular Sciences	2009	10(8)	3658-3670	
ZDB-PUB-090505-18	19409947	Luo, Y., Weng, S., Wang, Q., Shi, X., Dong, C., Lu, Q., Yu, X., and He, J.	Tiger frog virus can infect zebrafish cells for studying up- or down-regulated genes by proteomics approach	Virus research	2009	144(1-2)	171-179	
ZDB-PUB-090518-10	19437466	Bar-Ilan, O., Albrecht, R.M., Fako, V.E., and Furgeson, D.Y.	Toxicity Assessments of Multisized Gold and Silver Nanoparticles in Zebrafish Embryos	Small (Weinheim an der Bergstrasse, Germany)	2009	5(16)	1897-1910	
ZDB-PUB-090526-4	19447201	Nelson, S.M., Mahmoud, T., Beaux, M. 2nd, Shapiro, P., McIlroy, D.N., and Stenkamp, D.L.	Toxic and Teratogenic Silica Nanowires in Developing Vertebrate Embryos	Nanomedicine : nanotechnology, biology, and medicine	2010	6(1)	e93-e102	
ZDB-PUB-090616-3	16801975	Lin, S.L., Chang, S.J., and Ying, S.Y.	First in vivo evidence of microRNA-induced fragile X mental retardation syndrome	Molecular psychiatry	2006	11(7)	616-617	
ZDB-PUB-090616-49	19513471	Camponeschi, F., Gaggelli, E., Kozlowski, H., Valensin, D., and Valensin, G.	Structural features of the Zn(2+) complex with the single repeat region of "prion related protein" (PrP-rel-2) of zebrafish zPrP63-70 fragment	Dalton transactions (Cambridge, England : 2003)	2009	24	4643-4645	
ZDB-PUB-100105-6	20023909	Bagowski, C.P., You, Y., Scheffler, H., Vlecken, D.H., Schmitz, D.J., and Ott, I.	Naphthalimide gold(I) phosphine complexes as anticancer metallodrugs	Dalton transactions (Cambridge, England : 2003)	2009	48	10799-10805	
ZDB-PUB-090720-5	19609041	Ho, Y.L., Lin, Y.H., Tsai, W.Y., Hsieh, F.J., and Tsai, H.J.	Conditional Antisense-Knockdown of Zebrafish Cardiac Troponin C as a New Animal Model for Dilated Cardiomyopathy	Circulation journal : official journal of the Japanese Circulation Society	2009	73(9)	1691-1697	
ZDB-PUB-090731-5	19633057	Kelleher, M.O., McMahon, M., Eggleston, I.M., Dixon, M.J., Taguchi, K., Yamamoto, M., and Hayes, J.D.	1-Cyano-2,3-epithiopropane is a novel plant-derived chemopreventive agent which induces cytoprotective genes that afford resistance against the genotoxic {alpha},{beta}-unsaturated aldehyde acrolein	Carcinogenesis	2009	30(10)	1754-1762	
ZDB-PUB-090807-20	19656696	Haines, K., Neuberger, T., Lanagan, M., Semouchkina, E., and Webb, A.G.	High Q calcium titanate cylindrical dielectric resonators for magnetic resonance microimaging	Journal of magnetic resonance (San Diego, Calif. : 1997)	2009	200(2)	349-353	
ZDB-PUB-090914-23	19728319	Zhang, Z.Y., Yu, X.Y., Wang, D.L., Yan, H.J., and Liu, X.J.	Acute toxicity to zebrafish of two organophosphates and four pyrethroids and their binary mixtures	Pest management science	2010	66(1)	84-89	
ZDB-PUB-091023-52	19834225	Wan, Y., Otsuna, H., Chien, C.B., and Hansen, C.	An interactive visualization tool for multi-channel confocal microscopy data in neurobiology research	IEEE transactions on visualization and computer graphics	2009	15(6)	1489-1496	
ZDB-PUB-091120-54	19914277	Sarmah, B., and Wente, S.R.	Zebrafish inositol polyphosphate kinases: New effectors of cilia and developmental signaling	Advances in enzyme regulation	2009	\ 	\ 	
ZDB-PUB-091221-6	20006406	Tong, Z., Li, L., Pawar, R., and Zhang, S.	Vitellogenin is an acute phase protein with bacterial-binding and inhibiting activities	Immunobiology	2009	\ 	\ 	
ZDB-PUB-091221-12	20008863	Howng, S.Y., Douglas, D.S., and Popko, B.	A G-coupled Receptor Protein Critical for Peripheral Nerve Myelination	Journal of molecular cell biology	2009	\ 	\ 	
ZDB-PUB-091221-19	20013661	He, F., Wang, C.T., and Gou, L.T.	RNA-binding motif protein RBM22 is required for normal development of zebrafish embryos	Genetics and molecular research : GMR	2009	8(4)	1466-1473	
ZDB-PUB-100202-5	20103830	Suzuki, H., Tsukahara, T., and Inoue, K.	Localization of c-mos mRNA around the animal pole in the zebrafish oocyte with Zor-1/Zorba	Bioscience trends	2009	3(3)	96-104	
ZDB-PUB-100211-11	20128011	Fleming, A., Jankowski, J., and Goldsmith, P.	In vivo analysis of gut function and disease changes in a zebrafish larvae model of inflammatory bowel disease: A feasibility study	Inflammatory bowel diseases	2010	\ 	\ 	
ZDB-PUB-100211-22	20139016	Ullmann, J.F., Cowin, G., Kurniawan, N.D., and Collin, S.P.	A three-dimensional digital atlas of the zebrafish brain	NeuroImage	2010	\ 	\ 	
ZDB-PUB-100223-32	20158518	Rakers, S., Gebert, M., Uppalapati, S., Meyer, W., Maderson, P., Sell, A.F., Kruse, C., and Paus, R.	'Fish matters': the relevance of fish skin biology to investigative dermatology	Experimental dermatology	2010	\ 	\ 	
ZDB-PUB-100223-35	20159687	Xiong, S.Q., Yang, H.S., and Long, Q.D.	Bioinformatics analysis and function prediction of the novel gene AY358935	Nan fang yi ke da xue xue bao = Journal of Southern Medical University	2010	\ 	\ 	
ZDB-PUB-100223-62	20175243	Hu, Y.A., and Zhao, C.J.	Research progress of Wif1 in development of nervous system	Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences	2010	39(1)	93-96	
ZDB-PUB-100302-6	20179605	Sleep, E., Boué, S., Jopling, C., Raya, M., Raya, A., and Belmonte, J.C.	Transcriptomics approach to investigate zebrafish heart regeneration	Journal of cardiovascular medicine (Hagerstown, Md.)	2010	\ 	\ 	
ZDB-PUB-100309-13	20198855	He, Y.D., Liu, D.D., Xi, D.M., Yang, L.Y., Tan, Y.W., Liu, Q., Mao, H.M., and Deng, W.D.	Isolation, sequence identification and expression profile of three novel genes Rab2A, Rab3A and Rab7A from Black-boned sheep (Ovis aries)	Molekuliarnaia biologiia	2010	44(1)	20-27	
ZDB-PUB-040126-1	10882102	Slack, F.J., Basson, M., Liu, Z., Ambros, V., Horvitz, H.R., and Ruvkun, G.	The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor	Molecular Cell	2000	5(4)	659-669	
ZDB-PUB-020806-3	11090634	Uren, A.G., O'Rourke, K., Aravind, L.A., Pisabarro, M.T., Seshagiri, S., Koonin, E.V., and Dixit, V.M.	Identification of paracaspases and metacaspases: two ancient families of caspase-like proteins, one of which plays a key role in MALT lymphoma	Molecular Cell	2000	6(4)	961-967	
ZDB-PUB-081103-1	18951095	Basu, U., Wang, Y., and Alt, F.W.	Evolution of phosphorylation-dependent regulation of activation-induced cytidine deaminase	Molecular Cell	2008	32(2)	285-291	
ZDB-PUB-000927-4	10983974	Pöpperl, H., Rikhof, H., Chang, H., Haffter, P., Kimmel, C.B., and Moens, C.B.	lazarus is a novel pbx gene that globally mediates Hox gene function in zebrafish	Molecular Cell	2000	6(2)	255-267	
ZDB-PUB-090210-23	9659925	Kondo, T., Zákány, J., and Duboule, D.	Control of colinearity in AbdB genes of the mouse HoxD complex	Molecular Cell	1998	1(2)	289-300	
ZDB-PUB-991020-11	10518210	Meno, C., Gritsman, K., Ohishi, S., Ohfuji, Y., Heckscher, E., Mochida, K., Shimono, A., Kondoh, H., Talbot, W.S., Robertson, E.J., Schier, A.F., and Hamada, H.	Mouse lefty2 and zebrafish antivin are feedback inhibitors of nodal signaling during vertebrate gastrulation	Molecular Cell	1999	4(3)	287-298	
ZDB-PUB-040617-8	12535521	Brudler, R., Hitomi, K., Daiyasu, H., Toh, H., Kucho, K., Ishiura, M., Kanehisa, M., Roberts, V.A., Todo, T., Tainer, J.A., and Getzoff, E.D.	Identification of a New Cryptochrome Class: Structure, Function and Evolution	Mol. Cell.	2003	11(1)	59-67	
ZDB-PUB-040701-1	15225545	Lapik, Y.R., Fernandes, C.J., Lau, L.F., and Pestov, D.G.	Physical and Functional Interaction between Pes1 and Bop1 in Mammalian Ribosome Biogenesis	Mol. Cell.	2004	15(1)	17-29	
ZDB-PUB-010725-7	11064158	Bauer, M.P., Bridgham, J.T., Langenau, D.M., Johnson, A.L., and Goetz, F.W	Conservation of steroidogenic acute regulatory (StAR) protein structure and expression in vertebrates	Molecular and Cellular Endocrinology	2000	168(1-2)	119-125	
ZDB-PUB-050603-6	15921848	Ge, W.	Intrafollicular paracrine communication in the zebrafish ovary: The state of the art of an emerging model for the study of vertebrate folliculogenesis	Molecular and Cellular Endocrinology	2005	237(1-2)	1-10	
ZDB-PUB-000824-30	10940499	Fradinger, E.A. and Sherwood, N.M.	Characterization of the gene encoding both growth hormone-releasing hormone (GRF) and pituitary adenylate cyclase-activating polypeptide (PACAP) in the zebrafish	Molecular and Cellular Endocrinology	2000	165(1-2)	211-219	
ZDB-PUB-000125-10	10687864	Liu, Y.-W., Lo, L-J., and Chan, W.-K.	Temporal expression and T3 induction of thyroid hormone receptors 1 and 1 during early embryonic and larval development in zebrafish, Danio rerio	Molecular and Cellular Endocrinology	2000	159(1-2)	187-195	
ZDB-PUB-001101-11	10976925	Loudig, O., Babichuk, C., White, J., Abu-Abed, S., Mueller, C., and Petkovich, M.	Cytochrome P450RAI(CYP26) promoter: a distinct composite retinoic acid response element underlies the complex regulation of retinoic acid metabolism	Mol. Endocrinol.	2000	14(9)	1483-1497	
ZDB-PUB-050221-10	15718292	Krasowski, M.D., Yasuda, K., Hagey, L.R., and Schuetz, E.G.	Evolution of the pregnane X receptor: adaptation to cross-species differences in biliary bile salts	Mol. Endocrinol.	2005	19(7)	1720-1739	
ZDB-PUB-031024-1	10598593	Sloop, K.W., Meier, B.C., Bridwell, J.L., Parker, G.E., Schiller, A.M., and Rhodes, S.J.	Differential activation of pituitary hormone genes by human Lhx3 isoforms with distinct DNA binding properties	Mol. Endocrinol.	1999	13(12)	2212-2225	
ZDB-PUB-040202-1	14752054	Herzog, W., Sonntag, C., Walderich, B., Odenthal, J., Maischein, H.M., and Hammerschmidt, M.	Genetic analysis of adenohypophysis formation in zebrafish	Mol. Endocrinol.	2004	18(5)	1185-1195	
ZDB-PUB-040304-2	14988431	Appelbaum, L., Toyama, R., Dawid, I.B., Klein, D.C., Baler, R., and Gothilf, Y.	Zebrafish serotonin-N-acetyltransferase-2 gene regulation: Pineal-restrictive downstream module (PRDM) contains a functional E-box and three photoreceptor conserved elements	Mol. Endocrinol.	2004	18(5)	1210-1221	
ZDB-PUB-041228-24	15618288	Wood, A.W., Schlueter, P.J., and Duan, C.	Targeted knockdown of insulin-like growth factor binding protein-2 (IGFBP-2) disrupts cardiovascular development in zebrafish embryos	Mol. Endocrinol.	2005	19(4)	1024-1034	
ZDB-PUB-050810-7	16081519	Costache, A.D., Pullela, P.K., Kasha, P., Tomasiewicz, H., and Sem, D.S.	Homology modeled ligand-binding domains of zebrafish estrogen receptors {alpha}, {beta}1 and {beta}2: from in silico to in vivo studies of estrogen interactions in Danio rerio as a model system	Mol. Endocrinol.	2005	19(12)	2979-2990	
ZDB-PUB-051214-22	16339273	Liu, N.A., Liu, Q., Wawrowsky, K., Yang, Z., Lin, S., and Melmed, S.	Prolactin receptor signaling mediates the osmotic response of embryonic zebrafish lactotrophs	Mol. Endocrinol.	2006	20(4)	871-880	
ZDB-PUB-060207-15	16455818	Gu, X., Xu, F., Song, W., Wang, X., Hu, P., Yang, Y., Gao, X., and Zhao, Q.	A Novel Cytochrome P450, Zebrafish Cyp26D1, Is Involved in Metabolism of All-trans Retinoic Acid	Mol. Endocrinol.	2006	20(7)	1661-1672	
ZDB-PUB-060724-6	16840536	Zhao, Y., Yang, Z., Phelan, J.K., Wheeler, D.A., Lin, S., and McCabe, E.R.	Zebrafish dax1 is required for development of the interrenal organ, the adrenal cortex equivalent	Mol. Endocrinol.	2006	20(11)	2630-2640	
ZDB-PUB-070920-18	17872382	Nishio, S.I., Kakizawa, T., Chatelain, G., Triqueneaux, G., Brunet, F., Rambaud, J., Lamonerie, T., and Laudet, V.	OTX5 regulates pineal expression of the zebrafish REV-ERB± through a new DNA binding site	Mol. Endocrinol.	2008	22(1)	23-32	
ZDB-PUB-971204-1	9178748	Liu, D., Le Drean,Y., Ekker, M., Xiong, F., and Hew, C.L.	Teleost FTZ-F1 homolog and its splicing variant determine the expression of the salmon gonadotropin IIbeta subunit gene	Mol. Endocrinol.	1997	11(7)	877-890	
ZDB-PUB-030211-9	12576489	Liu, N.A., Huang, H., Yang, Z., Herzog, W., Hammerschmidt, M., Lin, S., and Melmed, S.	Pituitary corticotroph ontogeny and regulation in transgenic zebrafish	Mol. Endocrinol.	2003	17(5)	959-966	
ZDB-PUB-030902-3	11981033	Moore, L.B., Maglich, J.M., McKee, D.D., Wisely, B., Willson, T.M. Kliewer, S.A., Lambert, M.H., and Moore, J.T.	Pregnane X receptor (PXR), constitutive androstane receptor (CAR), and benzoate X receptor (BXR) define three pharmacologically distinct classes of nuclear receptors	Mol. Endocrinol.	2002	16(5)	977-986	
ZDB-PUB-040304-3	14988429	Nica, G., Herzog, W., Sonntag, C., and Hammerschmidt, M.	Zebrafish pit1 mutants lack three pituitary cell types and develop severe dwarfism	Mol. Endocrinol.	2004	18(5)	1196-1209	
ZDB-PUB-050818-10	16099813	Kim, H.J., Sumanas, S., Palencia-Desai, S., Dong, Y., Chen, J.N., and Lin, S.	Genetic analysis of early endocrine pancreas formation in zebrafish	Mol. Endocrinol.	2006	20(1)	194-203	
ZDB-PUB-061108-13	17082325	To, T.T., Hahner, S., Nica, G., Rohr, K.B., Hammerschmidt, M., Winkler, C., and Allolio, B.	Pituitary-interrenal interaction in zebrafish interrenal organ development	Mol. Endocrinol.	2007	21(2)	472-485	
ZDB-PUB-961014-1101	7749465	Sun, L., Bradford, C.S., and Barnes, D.W.	Feeder cell cultures for zebrafish embryonal cells in vitro	Mol. Mar. Biol. Biotechnol.	1995	4	43-50	
ZDB-PUB-961014-1303	none	Zhao, X., Zhang, P.J., and Wong, T.K.	Application of Baekonization: A new approach to produce transgenic fish	Mol. Mar. Biol. Biotechnol.	1993	2	63-69	
ZDB-PUB-961014-180	1308815	Collodi, P., Kamei, Y., Sharps, A., Weber, D., and Barnes, D.	Fish embryo cell cultures for derivation of stem cells and transgenic chimeras	Mol. Mar. Biol. Biotechnol.	1992	1	257-265	
ZDB-PUB-961014-347	7704114	Gibbs, P.D.L., Gray, A., and Thorgaard, G.	Inheritance of P element and reporter gene sequences in zebrafish	Mol. Mar. Biol. Biotechnol.	1994	3	317-326	
ZDB-PUB-961014-864	7921046	Pavell, A.M. and Stellwag, E.J.	Survey of Hox-like genes in the teleost Morone saxatilis: implications for evolution of the Hox gene family	Mol. Mar. Biol. Biotechnol.	1994	3	149-157	
ZDB-PUB-970324-10	8983196	Mathews, C.Z., Sjoberg, B.M., and Karlsson, M.	Cloning and sequencing of cDNAs encoding ribonucleotide reductase from zebrafish Danio rerio	Mol. Mar. Biol. Biotechnol.	1996	5(4)	284-287	
ZDB-PUB-970918-21	9116870	Collas, P. and Aleström, P.	Rapid targeting of plasmid DNA to zebrafish embryo nuclei by the nuclear localization signal of SV40 T antigen	Mol. Mar. Biol. Biotechnol.	1997	6(1)	48-58	
ZDB-PUB-970918-7	9200835	Cheng, R., Ford, B.L., O'Neal, P.E., Mathews, C.Z., Bradford, C-S., Thongtan, T., Barnes, D.W., Hendricks, J.D., and Bailey, G.S.	Zebrafish (Danio rerio) p53 tumor suppressor gene: cDNA sequence and expression during embryogenesis	Mol. Mar. Biol. Biotechnol.	1997	6(2)	88-97	
ZDB-PUB-981020-7	9701610	Hanley, S., Smith, T.J., Müller, F., Maclean, N., Uzbekova, S., Prunet, P., Breton, B.	Isolation and functional analysis of the histone H3 promoter from atlantic salmon (Salmo salar L.)	Mol. Mar. Biol. Biotechnol.	1998	7	165-172	
ZDB-PUB-961014-1017	none	Sekkali, B., Hellemans, B.A., Belayew, A., Martial, J.A., Ollevier, F., and Volckaert, F.A.	A comparative study of reporter gene activities in fish cells and embryos	Mol. Mar. Biol. Biotechnol.	1994	3	30-34	
ZDB-PUB-961014-1025	none	Sharps, A., Nishiyama, K., Collodi, P., and Barnes, D.	Comparison of activities of mammalian viral promoters directing gene expression in vitro in zebrafish and other fish cell lines	Mol. Mar. Biol. Biotechnol.	1992	1	426-431	
ZDB-PUB-961014-1102	7670594	Sun, L., Bradford, C.S., Ghosh, C., Collodi, P., and Barnes, D.W.	ES-like cell cultures derived from early zebrafish embryos	Mol. Mar. Biol. Biotechnol.	1995	4	193-199	
ZDB-PUB-961014-120	8087186	Bradford, C.S., Sun, L., and Barnes, D.W.	Basic fibroblast growth factor stimulates proliferation and suppresses melanogenesis in cell cultures derived from early zebrafish embryos	Mol. Mar. Biol. Biotechnol.	1994	3	78-86	
ZDB-PUB-961014-348	7535626	Gibbs, P.D.L., Peek, A., and Thorgaard, G.	An in vivo screen for the luciferase transgene in zebrafish	Mol. Mar. Biol. Biotechnol.	1994	3	307-316	
ZDB-PUB-961014-427	1308809	He, L., Zhu, Z., Faras, A.J., Guise, K.S., Hackett, P.B., and Kapuscinski, A.R.	Characterization of AluI repeats of zebrafish (Brachydanio rerio)	Mol. Mar. Biol. Biotechnol.	1992	1	125-135	
ZDB-PUB-970324-9	8983197	Gao, D., Dalton, M., Li, Z., Murphy, T., Kitzan, M., Sauerbier, A., and Sauerbier, W.	Zebrafish translation elongation factor EF1 alpha mRNA: sequence and secondary structures	Mol. Mar. Biol. Biotechnol.	1996	5(4)	288-294	
ZDB-PUB-970918-22	9116869	Cheng, R., Bradford, S., Barnes, D., Williams, D., Hendricks, J., and Bailey, G.	Cloning, sequencing, and embryonic expression of an N-ras proto-oncogene isolated from an enriched zebrafish (Danio rerio) cDNA library	Mol. Mar. Biol. Biotechnol.	1997	6(1)	40-47	
ZDB-PUB-970918-8	9200834	Sakai, N., Burgess, S., and Hopkins, N.	Delayed in vitro fertilization of zebrafish eggs in Hank's saline containing bovine serum albumin	Mol. Mar. Biol. Biotechnol.	1997	6(2)	84-87	
ZDB-PUB-980224-4	1308817	Müller, F., Ivics, Z., Erdelyi, F. Papp, T., Varadi, L., Horvath, L., Maclean, N., and Orbán, L.	Introducing foreign genes into fish eggs with electroporated sperm as a carrier	Mol. Mar. Biol. Biotechnol.	1992	1	276-281	
ZDB-PUB-961014-144	1339227	Buono, R.J. and Linser, P.J.	Transient expression of RSVCAT in transgenic zebrafish made by electroporation	Mol. Mar. Biol. Biotechnol.	1992	1	271-275	
ZDB-PUB-961014-160	7749466	Caldovic, L., and Hackett, P.B. Jr.	Development of position-independent expression vectors and their transfer into transgenic fish	Mol. Mar. Biol. Biotechnol.	1995	4	51-61	
ZDB-PUB-961014-25	1308825	Aleström, P., Kisen, G., Klungland, H., and Andersen, O.	Fish gonadotropin-releasing hormone gene and molecular approaches for control of sexual maturation: development of a transgenic fish model	Mol. Mar. Biol. Biotechnol.	1992	1	376-379	
ZDB-PUB-961014-482	8364694	Ivics, Z., Izsvák, Z., Hackett, P.B.	Enhanced incorporation of transgenic DNA into zebrafish chromosomes by a retroviral integration protein	Mol. Mar. Biol. Biotechnol.	1993	2	162-173	
ZDB-PUB-961014-890	1339228	Powers, D.A., Hereford, L., Cole, T., Chen, T.T., Lin, C.M., Kight, K., Creech, K., and Dunham, R.	Electroporation: a method for transferring genes into the gametes of zebrafish (Brachydanio rerio), channel catfish (Ictalurus punctatus), and common carp (Cyprinus carpio)	Mol. Mar. Biol. Biotechnol.	1992	1	301-308	
ZDB-PUB-970918-6	9200836	Tan, J.H. and Chan, W.K.	Efficient gene transfer into zebrafish skeletal muscle by intramuscular injection of plasmid DNA	Mol. Mar. Biol. Biotechnol.	1997	6(2)	98-109	
ZDB-PUB-990113-3	9418292	Husebye, H., Collas, P., and Aleström, P.	A functional study of the salmon GnRH promoter	Mol. Mar. Biol. Biotechnol.	1997	6	357-363	
ZDB-PUB-990316-4	9892723	Ungar, A.R., Helde, K.A., and Moon, R.T.	Production of androgenetic haploids in zebrafish with ultraviolet light	Mol. Mar. Biol. Biotechnol.	1999	7	320-326	
ZDB-PUB-040408-7	15062796	Prohaska, S.J, Fried, C., Flamm, C., Wagner, G.P., and Stadler, P.F.	Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications	Mol. Phylogenet. Evol.	2004	31(2)	581-604	
ZDB-PUB-090225-12	10191075	Lissemore, J.L., and Starmer, W.T.	Phylogenetic analysis of vertebrate and invertebrate Delta/Serrate/LAG-2 (DSL) proteins	Mol. Phylogenet. Evol.	1999	11(2)	308-319	
ZDB-PUB-050412-1	15804416	Gloriam, D.E., Bjarnadóttir, T.K., Yan, Y.L., Postlethwait, J.H., Schiöth, H.B., and Fredriksson, R.	The repertoire of trace amine G-protein-coupled receptors: large expansion in zebrafish	Mol. Phylogenet. Evol.	2005	35(2)	470-482	
ZDB-PUB-060710-3	16814572	Garcia-Espana, A., Chung, P.J., Zhao, X., Lee, A., Pellicer, A., Yu, J., Sun, T.T., and Desalle, R.	Origin of the tetraspanin uroplakins and their co-evolution with associated proteins: Implications for uroplakin structure and function	Mol. Phylogenet. Evol.	2006	41(2)	355-367	
ZDB-PUB-001130-6	11083943	Chiu, C.-H., Nonaka, D., Xue, L., Amemiya, C.T., and Wagner, G.P.	Evolution of Hoxa-11 in lineages phylogenetically positioned along the fin-limb transition	Mol. Phylogenet. Evol.	2000	17(2)	305-316	
ZDB-PUB-090225-11	17276090	Mallatt, J., and Winchell, C.J.	Ribosomal RNA genes and deuterostome phylogeny revisited: more cyclostomes, elasmobranchs, reptiles, and a brittle star	Mol. Phylogenet. Evol.	2007	43(3)	1005-1022	
ZDB-PUB-010102-4	11144219	Mold, D.E., Kim, I.F., Tsai, C.M., Lee, D., Chang, C.Y., and Huang, R.C.C.	Cluster of genes encoding the major egg envelope protein of zebrafish	Mol. Reprod. Dev.	2001	58(1)	4-14	
ZDB-PUB-021106-8	12412043	Peng, M.-Y., Wen, H.-J., Shih, L.-J., Kuo, C.-M., and Hwang, S.-P.L.	Myosin heavy chain expression in cranial, pectoral fin, and tail muscle regions of zebrafish embryos	Mol. Reprod. Dev.	2002	63(4)	422-429	
ZDB-PUB-040303-2	14991734	Kurita, K., and Sakai, N.	Functionally distinctive testicular cell lines of zebrafish to support male germ cell development	Mol. Reprod. Dev.	2004	67(4)	430-438	
ZDB-PUB-061229-27	17186538	Nakkrasae, L.I., and Damrongphol, P.	A vasa-like gene in the giant freshwater prawn, Macrobrachium rosenbergii	Mol. Reprod. Dev.	2007	74(7)	835-842	
ZDB-PUB-090106-38	19117036	Xu, Y., Lei, Y., Liu, Q., Liu, Y., Liu, S., Cheng, H., and Deng, F.	Cloning, characterization and expression of zvep, a novel vitelline envelope-specific gene in the zebrafish ovary	Mol. Reprod. Dev.	2009	76(6)	593-600	
ZDB-PUB-970812-10	9211424	Müller, F., Williams, D.W., Kobolak, J., Gauvry, L., Goldspink, G., Orbán, L., and Maclean, N.	Activator effect of coinjected enhancers on the muscle-specific expression of promoters in zebrafish embryos	Mol. Reprod. Dev.	1997	47(4)	404-412	
ZDB-PUB-010522-4	11424209	Mangos, S., Vanderbeld, B., Krawetz, R., Sudol, K., and Kelly, G.M.	Ran binding protein RanBP1 in zebrafish embryonic development	Mol. Reprod. Dev.	2001		5-248	
ZDB-PUB-090629-27	19551897	Lister, A.L., and Van Der Kraak, G.J.	Regulation of prostaglandin synthesis in ovaries of sexually-mature zebrafish (Danio rerio)	Mol. Reprod. Dev.	2009	76(11)	1064-1075	
ZDB-PUB-961014-89	9052946	Becker, K.A. and Hart, N.H.	The cortical actin cytoskeleton of unactivated zebrafish eggs: spatial organization and distribution of filamentous actin, nonfilamentous actin, and myosin-II	Mol. Reprod. Dev.	1996	43	536-547	
ZDB-PUB-000606-3	10824984	Khoo, H.W.	Sperm-mediated gene transfer studies on zebrafish in Singapore	Mol. Reprod. Dev.	2000	(Suppl.) 56(2)	278-280	
ZDB-PUB-031031-9	14579408	Hsieh, S.L., Liu, R.W., Wu, C.H., Cheng, W.T., and Kuo, C.M.	cDNA nucleotide sequence coding for stearoyl-CoA desaturase and its expression in the zebrafish (Danio rerio) embryo	Mol. Reprod. Dev.	2003	66(4)	325-333	
ZDB-PUB-050328-5	15791595	Lai, S.L., Chang, C.N., Wang, P.J., and Lee, S.J.	Rho mediates cytokinesis and epiboly via ROCK in zebrafish	Mol. Reprod. Dev.	2005	71(2)	186-196	
ZDB-PUB-060526-4	16700073	Ings, J.S., and Van Der Kraak, G.J.	Characterization of the mRNA expression of StAR and steroidogenic enzymes in zebrafish ovarian follicles	Mol. Reprod. Dev.	2006	73(8)	943-954	
ZDB-PUB-060703-15	16807888	Chun, C.Z., Tsai, H.J., and Chen, T.T.	Trout Ea4- or human Eb-peptide of pro-IGF-I disrupts heart, red blood cell, and vasculature development in zebrafish embryos	Mol. Reprod. Dev.	2006	73(9)	1112-1121	
ZDB-PUB-060927-10	16998847	Lessman, C.A., Nathani, R., Uddin, R., Walker, J., and Liu, J.	Computer-aided meiotic maturation assay (CAMMA) of zebrafish (danio rerio) oocytes in vitro	Mol. Reprod. Dev.	2007	74(1)	97-107	
ZDB-PUB-071210-35	18058918	Gross, J.M., and Perkins, B.D.	Zebrafish mutants as models for congenital ocular disorders in humans	Mol. Reprod. Dev.	2008	75(3)	547-555	
ZDB-PUB-080306-11	18288647	Le Page, Y., Menuet, A., Kah, O., and Pakdel, F.	Characterization of a cis-acting element involved in cell-specific expression of the zebrafish brain aromatase gene	Mol. Reprod. Dev.	2008	75(10)	1549-1557	
ZDB-PUB-961014-400	1497871	Hart, N.H., Becker, K.A., and Wolenski, J.S.	The sperm entry site during fertilization of the zebrafish egg: localization of actin	Mol. Reprod. Dev.	1992	32	217-228	
ZDB-PUB-990720-22	10398411	Braat, A.K., Zandbergen, M.A., de Vries, E., van der Burg, B., Bogerd, J., and Goos H.J.T.	Cloning and expression of the zebrafish germ cell nuclear factor	Mol. Reprod. Dev.	1999	53(4)	369-375	
ZDB-PUB-991220-15	10602268	Liang, M.-R., Aleström, P., and Collas, P.	Glowing zebrafish: integration, transmission, and expression of a single luciferase transgene promoted by noncovalent DNA-nuclear transport peptide complexes	Mol. Reprod. Dev.	2000	55(1)	8-13	
ZDB-PUB-091120-49	19908256	Lindeman, R.E., and Pelegri, F.	Vertebrate maternal-effect genes: Insights into fertilization, early cleavage divisions, and germ cell determinant localization from studies in the zebrafish	Mol. Reprod. Dev.	2010	77(4)	299-313	
ZDB-PUB-030326-4	12650900	Hampson, R. and Hughes, S.M.	Acridine mutagenesis of zebrafish (Danio rerio)	Mutat. Res.	2003	525(1-2)	1-9	
ZDB-PUB-050714-2	16005028	Nakamura, T., Amanuma, K., Aoki, Y.	Frameshift mutations induced by the acridine mustard ICR-191 in embryos and in the adult gill and hepatopancreas of rpsL transgenic zebrafish	Mutat. Res.	2005	578(1-2)	272-283	
ZDB-PUB-080825-15	18675378	Amanuma, K., Tone, S., Nagaya, M., Matsumoto, M., Watanabe, T., Totsuka, Y., Wakabayashi, K., and Aoki, Y.	2-[2-(acetylamino)-4-[bis(2-hydroxyethyl)amino]-5-methoxyphenyl]-5-amino-7-bromo-4-chloro-2H-benzotriazole (PBTA-6) and benzo[a]pyrene (BaP) in the gill and hepatopancreas of rpsL transgenic zebrafish	Mutat. Res.	2008	656(1-2)	36-43	
ZDB-PUB-090106-13	19101574	Titus, T.A., Yan, Y.L., Wilson, C., Starks, A.M., Frohnmayer, J.D., Canestro, C., Rodriguez-Mari, A., He, X., and Postlethwait, J.H.	The Fanconi anemia/BRCA gene network in zebrafish: Embryonic expression and comparative genomics	Mutat. Res.	2009	668(1-2)	117-132	
ZDB-PUB-031022-3	14568295	Jarvis, R.B. and Knowles, J.F.	DNA damage in zebrafish larvae induced by exposure to low-dose rate gamma-radiation: detection by the alkaline comet assay	Mutat. Res.	2003	541(1-2)	63-69	
ZDB-PUB-050202-5	15680402	Kopeika, J., Zhang, T., Rawson, D.M., and Elgar, G.	Effect of cryopreservation on mitochondrial DNA of zebrafish (Danio rerio) blastomere cells	Mutat. Res.	2005	570(1)	49-61	
ZDB-PUB-071219-6	18069050	Kosmehl, T., Hallare, A.V., Braunbeck, T., and Hollert, H.	DNA damage induced by genotoxicants in zebrafish (Danio rerio) embryos after contact exposure to freeze-dried sediment and sediment extracts from Laguna Lake (The Philippines) as measured by the comet assay	Mutat. Res.	2008	650(1)	1-14	
ZDB-PUB-080630-10	18579163	Georgiadis, M.M., Luo, M., Gaur, R.K., Delaplane, S., Li, X., and Kelley, M.R.	Evolution of the redox function in mammalian apurinic/apyrimidinic endonuclease	Mutat. Res.	2008	643(1-2)	54-63	
ZDB-PUB-041021-4	15491643	Amanuma, K., Nakamura, T., and Aoki, Y.	MNNG-induced mutations in the adult gill and hepatopancreas and in embryos of rpsL transgenic zebrafish	Mutat. Res.	2004	556(1-2)	151-161	
ZDB-PUB-060816-29	16904934	Yin, D., Gu, Y., Li, Y., Wang, X., and Zhao, Q.	Pentachlorophenol treatment in vivo elevates point mutation rate in zebrafish p53 gene	Mutat. Res.	2006	609(1)	92-101	
ZDB-PUB-080226-17	18243044	Seitz, N., Böttcher, M., Keiter, S., Kosmehl, T., Manz, W., Hollert, H., and Braunbeck, T.	A novel statistical approach for the evaluation of comet assay data	Mutat. Res.	2008	652(1)	38-45	
ZDB-PUB-081217-20	19061968	Grisolia, C.K., Oliveira, R., Domingues, I., Oliveira-Filho, E.C., Monerat, R.G., and Soares, A.M.	Genotoxic evaluation of different delta-endotoxins from Bacillus thuringiensis on zebrafish adults and development in early life stages	Mutat. Res.	2009	672(2)	119-123	
ZDB-PUB-020716-20	12105418	Jessen, J.R., Topczewski, J., Bingham, S., Sepich, D.S., Marlow, F., Chandrasekhar, A., and Solnica-Krezel, L.	Zebrafish trilobite identifies new roles for Strabismus in gastrulation and neuronal movements	Nat. Cell Biol.	2002	4(8)	610-615	
ZDB-PUB-030527-1	12766772	Kawakami, Y., Rodriguez-Leon, J., Koth, C.M., Büscher, D., Itoh, T., Raya, A., Ng, J.K., Rodriguez-Esteban, C., Takahashi, S., Henrique, D., Schwarz, M.F., Asahara, H., and Izpisúa Belmonte, J.C.	MKP3 mediates the cellular response to FGF8 signalling in the vertebrate limb	Nat. Cell Biol.	2003	5(6)	513-519	
ZDB-PUB-070620-2	16136187	Saúde, L., Lourenço, R., Gonçalves, A., and Palmeirim, I.	terra is a left-right asymmetry gene required for left-right synchronization of the segmentation clock	Nat. Cell Biol.	2005	7(9)	918-920	
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ZDB-PUB-080915-2	18776899	Diks, S.H., Sartori da Silva, M.A., Hillebrands, J.L., Bink, R.J., Versteeg, H.H., van Rooijen, C., Brouwers, A., Chitnis, A.B., Peppelenbosch, M.P., and Zivkovic, D.	d-Asb11 is an essential mediator of canonical Delta-Notch signalling	Nat. Cell Biol.	2008	10(10)	1190-1198	
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ZDB-PUB-100202-21	20118921	Ishitani, T., Hirao, T., Suzuki, M., Isoda, M., Ishitani, S., Harigaya, K., Kitagawa, M., Matsumoto, K., and Itoh, M.	Nemo-like kinase suppresses Notch signalling by interfering with formation of the Notch active transcriptional complex	Nat. Cell Biol.	2010	12(3)	278-285	
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ZDB-PUB-961014-1221	7584985	Weinstein, B.M., Stemple, D.L., Driever, W., and Fishman, M.C.	Gridlock, a localized heritable vascular patterning defect in the zebrafish	Nat. Med.	1995	1(11)	1143-1147	
ZDB-PUB-091120-10	19881492	Hassel, D., Dahme, T., Erdmann, J., Meder, B., Huge, A., Stoll, M., Just, S., Hess, A., Ehlermann, P., Weichenhan, D., Grimmler, M., Liptau, H., Hetzer, R., Regitz-Zagrosek, V., Fischer, C., Nürnberg, P., Schunkert, H., Katus, H.A., and Rottbauer, W.	Nexilin mutations destabilize cardiac Z-disks and lead to dilated cardiomyopathy	Nat. Med.	2009	15(11)	1281-1288	
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ZDB-PUB-060816-11	16892036	Topczewska, J.M., Postovit, L.M., Margaryan, N.V., Sam, A., Hess, A.R., Wheaton, W.W., Nickoloff, B.J., Topczewski, J., and Hendrix, M.J.	Embryonic and tumorigenic pathways converge via Nodal signaling: role in melanoma aggressiveness	Nat. Med.	2006	12(8)	925-932	
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ZDB-PUB-080630-19	18583362	Li, N., Flynt, A.S., Kim, H.R., Solnica-Krezel, L., and Patton, J.G.	Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites	Nucleic Acids Res.	2008	36(13)	4277-4285	
ZDB-PUB-081008-7	18832376	Shakes, L.A., Malcolm, T.L., Allen, K.L., De, S., Harewood, K.R., and Chatterjee, P.K.	Context dependent function of APPb enhancer identified using enhancer trap-containing BACs as transgenes in zebrafish	Nucleic Acids Res.	2008	36(19)	6237-6248	
ZDB-PUB-961014-1187	1475198	Verrijzer, C.P., Strating, M., Mul, Y.M., and vanderVliet, P.C.	POU domain transcription factors from different subclasses stimulate adenovirus DNA replication	Nucleic Acids Res.	1992	20	6369-6375	
ZDB-PUB-961014-492	8441661	Johansen, T., Moens, U., Holm, T., Fjose, A., and Krauss, S.	Zebrafish pou[c]: a divergent POU family gene ubiquitously expressed during embryogenesis	Nucleic Acids Res.	1993	21	475-483	
ZDB-PUB-020102-6	11752319	Krause, A., Haas, S.A., Coward, E., and Vingron, M.	SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.	Nucleic Acids Res.	2002	30(1)	299-300	
ZDB-PUB-030602-1	12771206	Miles, C.G., Rankin, L., Smith, S.I., Niksic, M., Elgar, G., and Hastie, N.D.	Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice	Nucleic Acids Res.	2003	31(11)	2795-2802	
ZDB-PUB-040625-14	15215377	Fairbrother,, W.G., Yeo, G.W., Yeh, R., Goldstein, P., Mawson, M., Sharp, P.A., and Burge, C.B.	RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons	Nucleic Acids Res.	2004	32(Web Server Issue)	W187-W190	
ZDB-PUB-050803-16	16061939	Oren, T., Torregroza, I., and Evans, T.	An Oct-1 binding site mediates activation of the gata2 promoter by BMP signaling	Nucleic Acids Res.	2005	33(13)	4357-4367	
ZDB-PUB-051116-2	16284195	Duffy, K.T., McAleer, M.F., Davidson, W.R., Kari, L., Kari, C., Liu, C.G., Farber, S.A., Cheng, K.C., Mest, J.R., Wickstrom, E., Dicker, A.P., and Rodeck, U.	Coordinate control of cell cycle regulatory genes in zebrafish development tested by cyclin D1 knockdown with morpholino phosphorodiamidates and hydroxyprolyl-phosphono peptide nucleic acids.	Nucleic Acids Res.	2005	33(15)	4914-4921	
ZDB-PUB-060105-19	16381981	Yamashita, R., Suzuki, Y., Wakaguri, H., Tsuritani, K., Nakai, K., and Sugano, S.	DBTSS: DataBase of Human Transcription Start Sites, progress report 2006	Nucleic Acids Res.	2006	34	D86-89	
ZDB-PUB-060526-1	16698962	Kloosterman, W.P., Steiner, F.A., Berezikov, E., de Bruijn, E., van de Belt, J., Verheul, M., Cuppen, E., and Plasterk, R.H.	Cloning and expression of new microRNAs from zebrafish	Nucleic Acids Res.	2006	34(9)	2558-2569	
ZDB-PUB-070203-5	17202160	Lee, J.Y., Yeh, I.,. Park, J.Y., and Tian, B.	PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes	Nucleic Acids Res.	2007	35	D165-8	
ZDB-PUB-071001-11	17897967	Bai, Q., Garver, J.A., Hukriede, N.A., and Burton, E.A.	Generation of a transgenic zebrafish model of Tauopathy using a novel promoter element derived from the zebrafish eno2 gene	Nucleic Acids Res.	2007	35(19)	6501-6516	
ZDB-PUB-071125-8	18003653	Wilming, L.G., Gilbert, J.G., Howe, K., Trevanion, S., Hubbard, T., and Harrow, J.L.	The vertebrate genome annotation (Vega) database	Nucleic Acids Res.	2008	36	D753-760	
ZDB-PUB-071227-1	18086703	Zeng, J., Yan, J., Wang, T., Mosbrook-Davis, D., Dolan, K.T., Christensen, R., Stormo, G.D., Haussler, D., Lathrop, R.H., Brachmann, R.K., and Burgess, S.M.	Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins	Nucleic Acids Res.	2008	36(1)	e8	
ZDB-PUB-080616-2	18522974	Feitsma, H., Akay, A., and Cuppen, E.	Alkylation damage causes MMR-dependent chromosomal instability in vertebrate embryos	Nucleic Acids Res.	2008	36(12)	4047-4056	
ZDB-PUB-961014-838	2902580	Njolstad, P.R., Molven, A., Hordvik, I., Apold, J., and Fjose, A.	Primary structure developmentally regulated expression and potential duplication of the zebrafish homeobox gene ZF-21	Nucleic Acids Res.	1988	16	9097-9112	
ZDB-PUB-970207-5	9016656	Spaniol, P., Bornmann, C., Hauptmann, G., and Gerster, T.	Class III POU genes of zebrafish are predominantly expressed in the central nervous system	Nucleic Acids Res.	1996	24(24)	4874-4881	
ZDB-PUB-091002-2	15034150	Kriaucionis, S., and Bird, A.	The major form of MeCP2 has a novel N-terminus generated by alternative splicing	Nucleic Acids Res.	2004	32(5)	1818-1823	
ZDB-PUB-040803-2	15273728	Maiorana, A., Tu, X., Cheng, G., and Baserga, R.	Role of pescadillo in the transformation and immortalization of mammalian cells	Oncogene	2004	23(42)	7116-7124	
ZDB-PUB-080326-25	18345029	Langenau, D.M., Keefe, M.D., Storer, N.Y., Jette, C.A., Smith, A.C., Ceol, C.J., Bourque, C., Look, A.T., and Zon, L.I.	Co-injection strategies to modify radiation sensitivity and tumor initiation in transgenic Zebrafish	Oncogene	2008	27(30)	4242-4248	
ZDB-PUB-080722-32	18641688	Upadhyay, G., Goessling, W., North, T.E., Xavier, R., Zon, L.I., and Yajnik, V.	Molecular association between beta-catenin degradation complex and Rac guanine exchange factor DOCK4 is essential for Wnt/beta-catenin signaling	Oncogene	2008	27(44)	5845-5855	
ZDB-PUB-970327-11	8622866	Kiefer, P., Mathieu, M., Mason, I., and Dickson, C.	Secretion and mitogenic activity of zebrafish FGF3 reveal intermediate properties relative to mouse and Xenopus homologues	Oncogene	1996	12(7)	1503-1511	
ZDB-PUB-070827-3	17704803	Faucherre, A., Taylor, G.S., Overvoorde, J., Dixon, J.E., and Hertog, J.D.	Zebrafish pten genes have overlapping and non-redundant functions in tumorigenesis and embryonic development	Oncogene	2008	27(8)	1079-1086	
ZDB-PUB-090714-14	19581931	Jiang, Y., Luo, W., and Howe, P.H.	Dab2 stabilizes Axin and attenuates Wnt/beta-catenin signaling by preventing protein phosphatase 1 (PP1)-Axin interactions	Oncogene	2009	28(33)	2999-3007	
ZDB-PUB-961014-547	7478606	Kent, J., Coriat, A.M., Sharpe, P.T., Hastie, N.D., and van-Heyningen, V.	The evolution of WT1 sequence and expression pattern in the vertebrates	Oncogene	1995	11	1781-1792	
ZDB-PUB-970327-5	9050987	Marcos-Gutiérrez, C.V., Wilson, S.W., Holder, N., and Pachnis, V.	The zebrafish homologue of the ret receptor and its pattern of expression during embryogenesis	Oncogene	1997	14(8)	879-889	
ZDB-PUB-000126-10	10637509	Brown, L.A., Yang, S.H., Hair, A., Galanis, A., and Sharrocks, A.D.	Molecular characterization of a zebrafish TCF ETS-domain transcription factor	Oncogene	1999	18(56)	7985-7993	
ZDB-PUB-010723-24	11423994	Montpetit, A. and Sinnett, D.	Comparative analysis of the ETV6 gene in vertebrate genomes from pufferfish to human	Oncogene	2001	20(26)	3437-3442	
ZDB-PUB-040923-1	15378083	Davidson, A.J., and Zon, L.I.	The 'definitive' (and 'primitive') guide to zebrafish hematopoiesis	Oncogene	2004	23(43)	7233-7246	
ZDB-PUB-060921-26	16983336	Liu, B., Lee, K.W., Anzo, M., Zhang, B., Zi, X., Tao, Y., Shiry, L., Pollak, M., Lin, S., and Cohen, P.	Insulin-like growth factor-binding protein-3 inhibition of prostate cancer growth involves suppression of angiogenesis	Oncogene	2007	26(12)	1811-1819	
ZDB-PUB-070813-16	17684488	Lee, K.C., Goh, W.L., Xu, M., Kua, N., Lunny, D., Wong, J.S., Coomber, D., Vojtesek, B., Lane, E.B., and Lane, D.P.	Detection of the p53 response in zebrafish embryos using new monoclonal antibodies	Oncogene	2008	27(5)	629-640	
ZDB-PUB-070920-21	17873909	Zhu, S., Korzh, V., Gong, Z., and Low, B.C.	RhoA prevents apoptosis during zebrafish embryogenesis through activation of Mek/Erk pathway	Oncogene	2008	27(11)	1580-1589	
ZDB-PUB-961014-1004	7936639	Schreiber-Agus, N., Chin, L., Chen, K., Torres, R., Thomson, C.T., Sacchettini, J.C., and DePinho, R.A.	Evolutionary relationships and functional conservation among vertebrate Max-associated proteins: the zebrafish homolog of Mxi1	Oncogene	1994	9(11)	3167-3177	
ZDB-PUB-980729-36	9671318	Brown, L.A., Amores, A., Schilling, T.F., Jowett, T., Baert, J.L., De Launoit, Y., and Sharrocks, A.D.	Molecular characterization of the zebrafish PEA3 ETS-domain transcription factor	Oncogene	1998	17	93-104	
ZDB-PUB-010416-3		Rodina, N.A. and Horvath, L.	Sex inversions in the zebrafish Brachydanio rerio (Cyprinidae)	Ontogenez (Russian Journal of Developmental Biology)	1999	30(6)	398	
ZDB-PUB-961014-1254	none	Whitfield, P.J., Anderson, R.M., and Bundy, D.A.P.	Host-specific components of the reproductive success of transversotrema patialense (Digenea: Transversotrematidae)	Parasitology	1986	92	683-698	
ZDB-PUB-030717-14	12732336	Larson, E.T., Fredriksson, R., Johansson, S.R.T., and Larhammar, D.	Cloning, pharmacology, and distribution of the neuropeptide Y-receptor Yb in rainbow trout	Peptides	2003	24(3)	385-395	
ZDB-PUB-071211-4	17714829	Tam, J.K., Lee, L.T., and Chow, B.K.	PACAP-related peptide (PRP)--molecular evolution and potential functions	Peptides	2007	28(9)	1920-1929	
ZDB-PUB-051114-7	16274850	Alrubaian, J., Lecaude, S., Barba, J., Szynskie, L., Jacobs, N., Bauer, D., Brown, C., Kaminer, I., Bagrosky, B., and Dores, R.M.	Trends in the evolution of the prodynorphin gene in teleosts: Cloning of eel and tilapia prodynorphin cDNAs	Peptides	2006	27(4)	797-804	
ZDB-PUB-071210-5	18045739	van Aerle, R., Kille, P., Lange, A., and Tyler, C.R.	Evidence for the existence of a functional Kiss1/Kiss1 receptor pathway in fish	Peptides	2008	29(1)	57-64	
ZDB-PUB-080415-9	18403048	Parmentier, C., Hameury, E., Lihrmann, I., Taxi, J., Hardin-Pouzet, H., Vaudry, H., Calas, A., and Tostivint, H.	Comparative distribution of the mRNAs encoding urotensin I and urotensin II in zebrafish	Peptides	2008	29(5)	820-829	
ZDB-PUB-090518-2	19427346	Volkoff, H., and Wyatt, J.L.	Apelin in goldfish (Carassius auratus): cloning, distribution and role in appetite regulation	Peptides	2009	30(8)	1434-1440	
ZDB-PUB-051221-9	16359756	Larsson, T.A., Larson, E.T., Fredriksson, R., Conlon, J.M., and Larhammar, D.	Characterization of NPY receptor subtypes Y2 and Y7 in rainbow trout Oncorhynchus mykiss	Peptides	2006	27(6)	1320-1327	
ZDB-PUB-071125-17	18022288	Gonzalez-Nuñez, V., Toth, G., and Rodríguez, R.E.	Endogenous heptapeptide Met-enkephalin-Gly-Tyr binds differentially to duplicate delta opioid receptors from zebrafish	Peptides	2007	28(12)	2340-2347	
ZDB-PUB-970102-15	1345682	Reinhard, E. and Skene, J.H.	Multiple elements may be used for regulation of the GAP-43 gene in different cell-types	Perspect. Dev. Neurobiol.	1992	1	29-37	
ZDB-PUB-030730-10	12883893	Brustein, E., Marandi, N., Kovalchuk, Y., Drapeau, P., and Konnerth, A.	"In vivo" monitoring of neuronal network activity in zebrafish by two-photon Ca(2+) imaging	Pflugers Arch.	2003	446(6)	766-773	
ZDB-PUB-040312-6	15006478	Lockwood, B., Bjerke, S., Kobayashi, K., and Guo, S.	Acute effects of alcohol on larval zebrafish: a genetic system for large-scale screening	Pharmacol. Biochem. Behav.	2004	77(3)	647-654	
ZDB-PUB-010220-14	11166068	Gerlai, R., Lahav, M., Guo, S., and Rosenthal, A.	Drinks like a fish: zebra fish (Danio rerio) as a behavior genetic model to study alcohol effects	Pharmacol. Biochem. Behav.	2000	67(4)	773-782	
ZDB-PUB-030115-39	12479969	Dlugos, C.A. and Rabin, R.A.	Ethanol effects on three strains of zebrafish: model system for genetic investigations	Pharmacol. Biochem. Behav.	2003	74(2)	471-480	
ZDB-PUB-070122-10	17196640	Gerlai, R., Lee, V., and Blaser, R.	Effects of acute and chronic ethanol exposure on the behavior of adult zebrafish (Danio rerio)	Pharmacol. Biochem. Behav.	2006	85(4)	752-761	
ZDB-PUB-090807-3	19643124	Bencan, Z., Sledge, D., and Levin, Z.B.	Buspirone, Chlordiazepoxide and Diazepam Effects in a Zebrafish Model of Anxiety	Pharmacol. Biochem. Behav.	2009	94(1)	75-80	
ZDB-PUB-100223-19	20153356	Blaser, R.E., Koid, A., and Poliner, R.M.	Context-dependent sensitization to ethanol in zebrafish (Danio rerio)	Pharmacol. Biochem. Behav.	2010	\ 	\ 	
ZDB-PUB-000906-3	none	Warren, K.S., Wu, J.C., Pinet, F., and Fishman, M.C.	The genetic basis of cardiac function: dissection by zebrafish (Danio rerio) screens	Philos. Trans. R. Soc. Lond. B. Biol. Sci.	2000	355(1399)	939-944	
ZDB-PUB-080218-5	18198152	Freisinger, C.M., Schneider, I., Westfall, T.A., and Slusarski, D.C.	Calcium dynamics integrated into signalling pathways that influence vertebrate axial patterning	Philos. Trans. R. Soc. Lond. B. Biol. Sci.	2008	363(1495)	1377-1385	
ZDB-PUB-081218-5	19064353	Andrew, R.J., Osorio, D., and Budaev, S.	Light during embryonic development modulates patterns of lateralization strongly and similarly in both zebrafish and chick	Philos. Trans. R. Soc. Lond. B. Biol. Sci.	2009	364(1519)	983-989	
ZDB-PUB-040810-1	15293807	Keating, M.T.	Genetic approaches to disease and regeneration	Philos. Trans. R. Soc. Lond. B. Biol. Sci.	2004	359(1445)	795-798	
ZDB-PUB-080218-6	18198156	Webb, S.E., Li, W.M., and Miller, A.L.	Calcium signalling during the cleavage period of zebrafish development	Philos. Trans. R. Soc. Lond. B. Biol. Sci.	2008	363(1495)	1363-1369	
ZDB-PUB-081218-4	19064351	Signore, I.A., Guerrero, N., Loosli, F., Colombo, A., Villalón, A., Wittbrodt, J., and Concha, M.L.	Zebrafish and medaka: model organisms for a comparative developmental approach of brain asymmetry	Philos. Trans. R. Soc. Lond. B. Biol. Sci.	2009	364(1519)	991-1003	
ZDB-PUB-081218-3	19064346	Facchin, L., Burgess, H.A., Siddiqi, M., Granato, M., and Halpern, M.E.	Determining the function of zebrafish epithalamic asymmetry	Philos. Trans. R. Soc. Lond. B. Biol. Sci.	2009	364(1519)	1021-1032	
ZDB-PUB-000330-2	11015580	Lekven, A.C., Helde, K.A., Thorpe, C.J., Rooke, R. and Moon, R.T.	Reverse genetics in zebrafish	Physiological Genomics	2000	2	37-48	
ZDB-PUB-021022-1	12388799	Pratt, S.J., Drejer, A., Foott, H., Barut, B., Brownlie, A., Postlethwait, J., Kato, Y., Yamamoto, M., and Zon, L.I.	Isolation and characterization of zebrafish NFE2	Physiological Genomics	2002	11(2)	91-98	
ZDB-PUB-050308-2	15741504	Marshall, C.R., Fox, J.A., Butland, S.L., Ouellette, B.F., Brinkman, F.S., and Tibbits, G.F.	Phylogeny of Na+-Ca2+ Exchanger (NCX) genes from genomic data identifies new gene duplications and a new family member in fish species	Physiological Genomics	2005	21(2)	161-173	
ZDB-PUB-051207-13	16317080	Zhang, C., Miki, T., Shibasaki, T., Yokokura, M., Saraya, A., and Seino, S.	Identification and characterization of a novel member of the ATP-sensitive K+ channel subunit, Kir6.3, in zebrafish	Physiological Genomics	2006	24(3)	290-297	
ZDB-PUB-061116-3	17090698	Morais, S., Knoll-Gellida, A., Andre, M., Barthe, C., and Babin, P.J.	Conserved expression of alternative splicing variants of peroxisomal acyl-CoA oxidase 1 in vertebrates and developmental and nutritional regulation in fish	Physiological Genomics	2007	28(3)	239-252	
ZDB-PUB-071023-18	17940200	Ikeda, D., Ono, Y., Snell, P., Edwards, Y.J., Elgar, G., and Watabe, S.	Divergent evolution of the myosin heavy chain gene family in fish and tetrapods; evidence from comparative genomic analysis	Physiological Genomics	2007	32(1)	1-15	
ZDB-PUB-100304-2	15886331	Jastroch, M., Wuertz, S., Kloas, W., and Klingenspor, M.	Uncoupling protein 1 in fish uncovers an ancient evolutionary history of mammalian nonshivering thermogenesis	Physiological Genomics	2005	22(2)	150-156	
ZDB-PUB-020220-10	11842131	Chen, M.C., Zhou, Y., and Detrich, H.W. III	Zebrafish mitotic kinesin-like protein 1 (Mklp1) functions in embryonic cytokinesis	Physiological Genomics	2002	8(1)	51-66	
ZDB-PUB-051207-14	16317081	Romano, A., Kottra, G., Barca, A., Tiso, N., Maffia, M., Argenton, F., Daniel, H., Storelli, C., and Verri, T.	The high-affinity peptide transporter PEPT2 (SLC15A2) of the zebrafish Danio rerio: functional properties, genomic organization and expression analysis	Physiological Genomics	2006	24(3)	207-217	
ZDB-PUB-060724-22	16849636	Papasani, M.R, Robison, B.D., Hardy, R.W., and Hill, R.A.	Early Developmental Expression of Two Insulins in Zebrafish (Danio rerio)	Physiological Genomics	2006	27(1)	79-85	
ZDB-PUB-060807-8	16882884	Lam, S.H., Winata, C.L., Tong, Y., Korzh, S., Lim, W.S., Korzh, V., Spitsbergen, J., Mathavan, S., Miller, L.D., Liu, E.T., and Gong, Z.	Transcriptome Kinetics of Arsenic-induced Adaptive Response in Zebrafish Liver	Physiological Genomics	2006	27(3)	351-361	
ZDB-PUB-070303-12	17299134	Craig, P.M., Wood, C.M., and McClelland, G.B.	Gill membrane remodeling with softwater acclimation in Zebrafish (Danio rerio)	Physiological Genomics	2007	30(1)	53-60	
ZDB-PUB-080226-13	18230668	Chen, J., Carney, S.A., Peterson, R.E., and Heideman, W.	Comparative Genomics Identifies Genes Mediating Cardiotoxicity in the Embryonic Zebrafish Heart	Physiological Genomics	2008	33(2)	148-158	
ZDB-PUB-080421-7	18413783	Carlile, M., Nalbant, P., Preston-Fayers, K., McHaffie, G.S., and Werner, A.	Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs	Physiological Genomics	2008	34(1)	95-100	
ZDB-PUB-080616-21	18544660	Markovich, D., Romano, A., Storelli, C., and Verri, T.	Functional and structural characterization of the zebrafish Na+-sulfate cotransporter 1 (NaS1) cDNA and gene (slc13a1)	Physiological Genomics	2008	34(3)	256-264	
ZDB-PUB-080707-4	18593860	Evans, H., De Tomaso, T., Quail, M., Rogers, J., Gracey, A.Y., Cossins, A.R., and Berenbrink, M.	Ancient and modern duplication events and the evolution of stearoyl-CoA desaturases in teleost fishes	Physiological Genomics	2008	35(1)	18-29	
ZDB-PUB-080902-10	18728227	Drew, R.E., Rodnick, K.J., Settles, M.L., Wacyk, J., Churchill, E.J., Powell, M.S., Hardy, R.W., Murdoch, G.K., Hill, R.A., and Robison, B.D.	Effect of starvation on the transcriptomes of the brain and liver in adult female zebrafish (Danio rerio)	Physiological Genomics	2008	35(3)	283-295	
ZDB-PUB-090616-48	19509081	Packham, I.M., Gray, C., Heath, P.R., Hellewell, P.G., Ingham, P.W., Crossman, D.C., Milo, M., and Chico, T.J.	Microarray profiling reveals CXCR4a is downregulated by blood flow in vivo and mediates collateral formation in zebrafish embryos	Physiological Genomics	2009	38(3)	319-327	
ZDB-PUB-001019-14	11015581	Barut, B.A. and Zon, L.I.	Realizing the potential of zebrafish as a model for human disease	Physiological Genomics	2000	2(2)	49-51	
ZDB-PUB-030425-21	12700360	Ton, C., Stamatiou, D., and Liew, C.-C.	Gene expression profile of zebrafish exposed to hypoxia during development	Physiological Genomics	2003	13(2)	97-106	
ZDB-PUB-031204-14	14645735	Liang, P., Jones, C.A., Bisgrove, B.W., Song, L., Glenn, S.T., Yost, H.J., and Gross, K.W.	Genomic characterization and expression analysis of the first non-mammalian renin genes from zebrafish and pufferfish	Physiological Genomics	2004	16(3)	314-322	
ZDB-PUB-060825-18	16926268	Saito, S., and Shingai, R.	Evolution of thermoTRP ion channel homologs in vertebrates	Physiological Genomics	2006	27(3)	219-230	
ZDB-PUB-061020-34	17032814	Delpire, E., and Gagnon, K.B.	Genome-wide analysis of SPAK/OSR1 binding motifs	Physiological Genomics	2007	28(2)	223-231	
ZDB-PUB-070330-31	17374843	Santos, E.M., Workman, V.L., Paull, G.C., Filby, A.L., Van Look, K.J., Kille, P., and Tyler, C.R.	Molecular basis of gender and reproductive status in breeding zebrafish	Physiological Genomics	2007	30(2)	111-122	
ZDB-PUB-080515-16	18477665	Zheng, D., Feeney, G.P., Kille, P., and Hogstrand, C.	Regulation of ZIP and ZnT zinc transporters in zebrafish gill: zinc repression of ZIP10 transcription by an intronic MRE cluster	Physiological Genomics	2008	34(2)	205-214	
ZDB-PUB-080825-25	18682574	Ebert, A.M., McAnelly, C.A., Handschy, A.V., Mueller, R.L., Horne, W.A., and Garrity, D.M.	Genomic organization, expression and phylogenetic analysis of Ca2+ channel {beta}4 (CACNB4) genes in thirteen vertebrate species	Physiological Genomics	2008	35(2)	133-144	
ZDB-PUB-091005-4	19789285	Craig, P.M., Hogstrand, C., Wood, C.M., and McClelland, G.B.	Gene expression endpoints following chronic waterborne copper exposure in a genomic model organism, the zebrafish, Danio rerio	Physiological Genomics	2009	40(1)	23-33	
ZDB-PUB-040525-2	15155876	Henikoff, S., Till, B.J., and Comai, L.	TILLING. Traditional Mutagenesis Meets Functional Genomics	Plant Physiol.	2004	135(2)	630-636	
ZDB-PUB-040217-2	12477932	Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences	Proc. Natl. Acad. Sci.	2002	99(26)	16899-903	
ZDB-PUB-010313-1	10706615	Rouquier, S., Blancher, A., and Giorgi, D.	The olfactory receptor gene repertoire in primates and mouse: evidence for reduction of the functional fraction in primates	Proc. Natl. Acad. Sci.	2000	97	2870-2774	
ZDB-PUB-971223-1	9391103	Xie, Y., Chen, X., and Wagner, T.E.	A ribozyme-mediated gene "knockdown" strategy for the identification of gene function in zebrafish	Proc. Natl. Acad. Sci.	1997	94	13777-13781	
ZDB-PUB-961219-7	8917589	Weth, F., Nadler, W., and Korsching, S.	Nested expression domains for odorant receptors in zebrafish olfactory epithelium	Proc. Natl. Acad. Sci.	1996	93(23)	13321-13326	
ZDB-PUB-970429-63	9096349	Conway, G., Margoliath, A., Wong-Madden, S., Roberts, R.J., and Gilbert, W.	Jak1 kinase is required for cell migrations and anterior specification in zebrafish embryos	Proc. Natl. Acad. Sci.	1997	94(7)	3082-3087	
ZDB-PUB-970702-2	9177206	Meng, A., Tang, H., Ong, B.A., Farrell, M.J., and Lin, S.	Promotor analysis in living zebrafish embryos identifies a cis-acting motif required for neuronal expression of GATA-2	Proc. Natl. Acad. Sci.	1997	94(12)	6267-6272	
ZDB-PUB-971216-2	9371791	Brown, D.D.	The role of thyroid hormone in zebrafish and axolotl development	Proc. Natl. Acad. Sci.	1997	94(24)	13011-13016	
ZDB-PUB-961014-246	none	Dutta, S.P.S. and Malhotra, Y.R.	Food and feeding habits of some fishes of Gadigarh Stream Jammu	Proc. Natl. Acad. Sci. India, Sect. B	1991	61	163-168	
ZDB-PUB-061221-4	14407784	Jones, R.W., Rhone, J.R., and Huffman, M.N.	Cytostatic activities of steroidal estrogens against zebra-fish embryos	Proceedings of the Society for Experimental Biology and Medicine	1960	104	190-191	
ZDB-PUB-010511-10	11331101	Hla, T.	Sphingosine 1-phosphate receptors	Prostaglandins	2001	64(1-4)	135-142	
ZDB-PUB-020708-8	12001226	Bianchetti, L., Oudet, C., and Poch, O.	M13 endopeptidases: New conserved motifs correlated with structure, and simultaneous phylogenetic occurrence of PHEX and the bony fish	Proteins	2002	47(4)	481-488	
ZDB-PUB-961014-946	none	Roesner, H.	Action of chloropromazine in the teleost CNS. I. Effects on behaviour and the incorporation of 3-H-uridine and 3-H-histidine	Psychpharma	1972	23	125-135	
ZDB-PUB-060105-7	16373484	Sethupathy, P., Corda, B., and Hatzigeorgiou, A.G.	TarBase: A comprehensive database of experimentally supported animal microRNA targets	RNA	2006	12(2)	192-197	
ZDB-PUB-070210-15	17237356	Nousch, M., Reed, V., Bryson-Richardson, R.J., Currie, P.D., and Preiss, T.	The eIF4G-homolog p97 can activate translation independent of caspase cleavage	RNA	2007	13(3)	374-384	
ZDB-PUB-070330-49	17369312	Alekseyenko, A.V., Kim, N., and Lee, C.J.	Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes	RNA	2007	13(5)	661-670	
ZDB-PUB-090928-5	19767420	Amaral, P.P., Neyt, C., Wilkins, S.J., Askarian-Amiri, M.E., Sunkin, S.M., Perkins, A.C., and Mattick, J.S.	Complex architecture and regulated expression of the Sox2ot locus during vertebrate development	RNA	2009	15(11)	2013-2027	
ZDB-PUB-080228-5	18268022	Hiller, M., Szafranski, K., Sinha, R., Huse, K., Nikolajewa, S., Rosenstiel, P., Schreiber, S., Backofen, R., and Platzer, M.	Assessing the fraction of short-distance tandem splice sites under purifying selection	RNA	2008	14(4)	616-629	
ZDB-PUB-041216-11	12554859	Lagos-Quintana, M., Rauhut, R., Meyer, J., Borkhardt, A., and Tuschl, T.	New microRNAs from mouse and human	RNA	2003	9(2)	175-179	
ZDB-PUB-041229-3	12554860	Dostie, J., Mourelatos, Z., Yang, M., Sharma, A., and Dreyfuss, G.	Numerous microRNPs in neuronal cells containing novel microRNAs	RNA	2003	9(2)	180-186	
ZDB-PUB-091113-1	19854872	Lund, E., Liu, M., Hartley, R.S., Sheets, M.D., and Dahlberg, J.E.	Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos	RNA	2009	15(12)	2351-2363	
ZDB-PUB-961014-61	none	Baffoni, G.M. and Stefanelli, A.	La citomorfosi del neurone Mauthneriano di un teleosteo durante lo sviluppe	Riv. Biol.	1952	44	469-491	
ZDB-PUB-961014-429		Heesen, D.T. and Engels, W.	Elektrophoretische Untersuchungen zur Vitellogenese von Brachydanio rerio (Cyprinidae, Teleostei)	Roux's Arch. Entwicklungsmech. Organ.	1973	173	46-59	
ZDB-PUB-970102-10	8652135	Hackett, P.B.	Genetic engineering of Minnesota superfish	SAAS. Bull. Biochem. Biotechnol.	1996	9	69-76	
ZDB-PUB-961014-933	7909956	Rennie, J.	Super sonic. A gene named for a video game guides development	Sci. Am.	1994	270	20	
ZDB-PUB-961014-151	1726129	Butte, W., Fox, K., and Zauke, G.P.	Kinetics of bioaccumulation and clearance of isomeric hexachlorocyclohexanes	Sci. Total Environ. pp.	1990		9-110	
ZDB-PUB-010315-8	11239427	Rohr, K.B., Barth, K.A., Varga, Z.M., and Wilson, S.W.	The nodal pathway acts upstream of hedgehog signaling to specify ventral telencephalic identity	Neuron	2001	29(2)	341-351	
ZDB-PUB-020701-11	10985338	Easter, S.S.	Let there be sight	Neuron	2000	27(2)	193-195	
ZDB-PUB-021017-71	12160744	Houart, C., Caneparo, L., Heisenberg, C.P., Barth, K.A., Take-uchi, M., and Wilson, S.W.	Establishment of the telencephalon during gastrulation by local antagonism of Wnt signaling	Neuron	2002	35(2)	255-265	
ZDB-PUB-030219-1	12597858	Das, T., Payer, B., Cayouette, M., and Harris, W.A.	In vivo time-lapse imaging of cell divisions during neurogenesis in the developing zebrafish retina	Neuron	2003	37(4)	597-609	
ZDB-PUB-030730-20	12895418	Concha, M.L., Russell, C., Regan, J.C., Tawk, M., Sidi, S., Gilmour, D.T., Kapsimali, M., Sumoy, L., Goldstone, K., Amaya, E., Kimelman, D., Nicolson, T., Gründer, S., Gomperts, M., Clarke, J.D.W., and Wilson, S.W.	Local tissue interactions across the dorsal midline of the forebrain establish CNS laterality	Neuron	2003	39(3)	423-438	
ZDB-PUB-050907-3	16129396	Knaut, H., Blader, P., Strahle, U., and Schier, A.F.	Assembly of trigeminal sensory Ganglia by chemokine signaling	Neuron	2005	47(5)	653-666	
ZDB-PUB-060602-1	15996547	Cavodeassi, F., Carreira-Barbosa, F., Young, R., Concha, M., Allende, M.L., Houart, C., Tada, M., and Wilson, S.	Early Stages of Zebrafish Eye Formation Require the Coordinated Activity of Wnt11, Fz5, and the Wnt/Catenin Pathway	Neuron	2005	47(1)	43-56	
ZDB-PUB-070122-8	17196533	Bhatt, D.H., McLean, D.L., Hale, M.E., and Fetcho, J.R.	Grading Movement Strength by Changes in Firing Intensity versus Recruitment of Spinal Interneurons	Neuron	2007	53(1)	91-102	
ZDB-PUB-070614-5	17521567	Szobota, S., Gorostiza, P., Del Bene, F., Wyart, C., Fortin, D.L., Kolstad, K.D., Tulyathan, O., Volgraf, M., Numano, R., Aaron, H.L., Scott, E.K., Kramer, R.H., Flannery, J., Baier, H., Trauner, D., and Isacoff, E.Y.	Remote control of neuronal activity with a light-gated glutamate receptor	Neuron	2007	54(4)	535-545	
ZDB-PUB-070813-9	17678853	Carl, M., Bianco, I.H., Bajoghli, B., Aghaallaei, N., Czerny, T., and Wilson, S.W.	Wnt/Axin1/beta-Catenin Signaling Regulates Asymmetric Nodal Activation, Elaboration, and Concordance of CNS Asymmetries	Neuron	2007	55(3)	393-405	
ZDB-PUB-071118-3	17640525	Campbell, D.S., Stringham, S.A., Timm, A., Xiao, T., Law, M.Y., Baier, H., Nonet, M.L., and Chien, C.B.	Slit1a inhibits retinal ganglion cell arborization and synaptogenesis via Robo2-dependent and -independent pathways	Neuron	2007	55(2)	231-245	
ZDB-PUB-961014-1246	2361010	Westerfield, M., Liu, D.W., Kimmel, C.B., and Walker, C.	Pathfinding and synapse formation in a zebrafish mutant lacking functional acetylcholine receptors	Neuron	1990	4	867-874	
ZDB-PUB-961014-168	1873031	Chitnis, A.B. and Kuwada, J.Y.	Elimination of a brain tract increases errors in pathfinding by follower growth cones in the zebrafish embryo	Neuron	1991	7	277-285	
ZDB-PUB-961014-265	1739460	Eisen, J.S.	The role of interactions in determining cell fate of two identified motoneurons in the embryonic zebrafish	Neuron	1992	8	231-240	
ZDB-PUB-961014-339	1632965	Gatchalian, C.L. and Eisen, J.S.	Pathway selection by ectopic motoneurons in embryonic zebrafish	Neuron	1992	9	105-112	
ZDB-PUB-961014-719	7946344	Macdonald, R., Xu, Q., Barth, K.A., Mikkola, I., Holder, N., Fjose, A., Krauss, S., and Wilson, S.W.	Regulatory gene expression boundaries demarcate sites of neuronal differentiation in the embryonic zebrafish forebrain	Neuron	1994	13	1039-1053	
ZDB-PUB-961014-75	8562087	Barth, A.L., Justice, N.J., and Ngai, J.	Asynchronous onset of odorant receptor expression in the developing zebrafish olfactory system	Neuron	1996	16	23-34	
ZDB-PUB-961014-923	8318234	Raymond, P.A., Barthel, L.K., Rounsifer, M.E., Sullivan, S.A., and Knight, J.K.	Expression of rod and cone visual pigments in goldfish and zebrafish: a rhodopsin-like gene is expressed in cones	Neuron	1993	10	1161-1174	
ZDB-PUB-961014-97	1586486	Bernhardt, R.R., Nguyen, N., and Kuwada, J.Y.	Growth cone guidance by floor plate cells in the spinal cord of zebrafish embryos	Neuron	1992	8	869-882	
ZDB-PUB-970423-5	9115732	Kikuchi, Y., Segawa, H., Tokumoto, M., Tsubokawa, T., Hotta, Y., Uyemura, K., and Okamoto, H.	Ocular and cerebellar defects in zebrafish induced by overexpression of the LIM domains of the islet-3 LIM/homeodomain protein	Neuron	1997	18(3)	369-382	
ZDB-PUB-970724-4	9182799	Friedrich, R.W. and Korsching, S.I.	Combinatorial and chemotopic odorant coding in the zebrafish olfactory bulb visualized by optical imaging	Neuron	1997	18(5)	737-752	
ZDB-PUB-000922-3	10985346	Masai, I., Stemple, D.L., Okamoto, H., and Wilson, S.W.	Midline signals regulate retinal neurogenesis in zebrafish	Neuron	2000	27(2)	251-263	
ZDB-PUB-010705-5	11395004	Segawa, H., Miyashita, T., Hirate, Y., Higashijima, S., Chino, N., Uyemura, K., Kikuchi, Y., and Okamoto, H.	Functional repression of islet-2 by disruption of complex with Ldb impairs peripheral axonal outgrowth in embryonic zebrafish	Neuron	2001	30(2)	423-436	
ZDB-PUB-040609-12	15182712	Tsujikawa, M., and Malicki, J.	Intraflagellar transport genes are essential for differentiation and survival of vertebrate sensory neurons	Neuron	2004	42(5)	703-716	
ZDB-PUB-050106-4	15629703	Grant, K.A., Raible, D.W., and Piotrowski, T.	Regulation of latent sensory hair cell precursors by glia in the zebrafish lateral line	Neuron	2005	45(1)	69-80	
ZDB-PUB-061205-9	17114046	Mumm, J.S., Williams, P.R., Godinho, L., Koerber, A., Pittman, A.J., Roeser, T., Chien, C.B., Baier, H., and Wong, R.O.	In vivo imaging reveals dendritic targeting of laminated afferents by zebrafish retinal ganglion cells	Neuron	2006	52(4)	609-621	
ZDB-PUB-070122-6	17196524	Demas, J., and Cline, H.T.	The blu Blur: Mutation of a Vesicular Glutamate Transporter Reduces the Resolution of Zebrafish Vision	Neuron	2007	53(1)	4-6	
ZDB-PUB-080209-4	18184563	Choi, P.S., Zakhary, L., Choi, W.Y., Caron, S., Alvarez-Saavedra, E., Miska, E.A., McManus, M., Harfe, B., Giraldez, A.J., Horvitz, R.H., Schier, A.F., and Dulac, C.	Members of the miRNA-200 Family Regulate Olfactory Neurogenesis	Neuron	2008	57(1)	41-55	
ZDB-PUB-090123-4	19146810	Regan, J.C., Concha, M.L., Roussigne, M., Russell, C., and Wilson, S.W.	An Fgf8-dependent bistable cell migratory event establishes CNS asymmetry	Neuron	2009	61(1)	27-34	
ZDB-PUB-090319-7	19285469	Jing, L., Lefebvre, J.L., Gordon, L.R., and Granato, M.	Wnt signals organize synaptic prepattern and axon guidance through the zebrafish unplugged/MuSK receptor	Neuron	2009	61(5)	721-733	
ZDB-PUB-961014-274	2025428	Eisen, J.S. and Pike, S.H.	The spt-1 mutation alters the segmental arrangement and axonal development of identified neurons in the spinal cord of the embryonic zebrafish	Neuron	1991	6	767-776	
ZDB-PUB-961014-416	1382472	Hatta, K.	Role of the floor plate in axonal patterning in the zebrafish CNS	Neuron	1992	9	629-642	
ZDB-PUB-961014-581	2322459	Kimmel, C.B., Hatta, K., and Metcalfe, W.K.	Early axonal contacts during development of an identified dendrite in the brain of the zebrafish	Neuron	1990	4	535-545	
ZDB-PUB-970207-4	8982162	O'Malley, D.M., Kao, Y.H., and Fetcho, J.R.	Imaging the functional organization of zebrafish hindbrain segments during escape behaviors	Neuron	1996	17(6)	1145-1155	
ZDB-PUB-970616-3	9010204	Masai, I., Heisenberg, C.P., Barth, K.A., Macdonald, R., Adamek, S., and Wilson, S.W.	floating head and masterblind regulate neuronal patterning in the roof of the forebrain	Neuron	1997	18(1)	43-57	
ZDB-PUB-971003-2	9292725	Barth, A.L., Dugas, J.C., and Ngai, J.	Noncoordinate expression of odorant receptor genes tightly linked in the zebrafish genome	Neuron	1997	19(2)	359-369	
ZDB-PUB-980319-3	9491988	Nicolson, T., Rüsch, A., Friedrich, R.W., Granato, M., Ruppersberg, J.P., and Nüsslein-Volhard, C.	Genetic analysis of vertebrate sensory hair cell mechanosensation: the zebrafish circler mutants	Neuron	1998	20	271-283	
ZDB-PUB-980729-35	9655497	Dynes, J.L. and Ngai, J.	Pathfinding of olfactory neuron axons to stereotyped glomerular targets revealed by dynamic imaging in living zebrafish embryos	Neuron	1998	20	1081-1091	
ZDB-PUB-990727-20	10399938	Liu, K.S. and Fetcho, J.R.	Laser ablations reveal functional relationships of segmental hindbrain neurons in zebrafish	Neuron	1999	23(2)	325-335	
ZDB-PUB-001213-6	11144351	Concha, M.L., Burdine, R.D., Russell, C., Schier, A.F., and Wilson, S.W.	A nodal signaling pathway regulates the laterality of neuroanatomical asymmetries in the zebrafish forebrain	Neuron	2000	28(2)	399-409	
ZDB-PUB-010705-12	11430806	Kay, J.N., Finger-Baier, K.C., Roeser, T., Staub, W., and Baier, H.	Retinal ganglion cell genesis requires lakritz, a zebrafish atonal homolog	Neuron	2001	30(3)	725-736	
ZDB-PUB-011010-8	11580902	Saint-Amant, L. and Drapeau, P.	Synchronization of an embryonic network of identified spinal interneurons solely by electrical coupling	Neuron	2001	31(6)	1035-1046	
ZDB-PUB-020130-2	11804569	Hutson, L.D. and Chien, C.-B.	Pathfinding and error correction by retinal axons. The role of astray/robo2	Neuron	2002	33(2)	205-217	
ZDB-PUB-020624-1	12062041	Gilmour, D.T., Maischein, H.M., Nüsslein-Volhard, C.	Migration and function of a glial subtype in the vertebrate peripheral nervous system	Neuron	2002	34(4)	577-588	
ZDB-PUB-040405-5	15046724	Kennedy, M.J., Dunn, F.A., and Hurley, J.B.	Visual pigment phosphorylation but not transducin translocation can contribute to light adaptation in zebrafish cones	Neuron	2004	41(6)	915-928	
ZDB-PUB-040810-2	15294139	Ibanez-Tallon, I., Wen, H., Miwa, J.M., Xing, J., Tekinay, A.B., Ono, F., Brehm, P., and Heintz, N.	Tethering naturally occurring Peptide toxins for cell-autonomous modulation of ion channels and receptors in vivo	Neuron	2004	43(3)	305-311	
ZDB-PUB-041228-6	15603738	Lee, J.S., von der Hardt, S., Rusch, M.A., Stringer, S.E., Stickney, H.L., Talbot, W.S., Geisler, R., Nüsslein-Volhard, C., Selleck, S.B., Chien, C.B., and Roehl, H.	Axon Sorting in the Optic Tract Requires HSPG Synthesis by ext2 (dackel) and extl3 (boxer)	Neuron	2004	44(6)	947-960	
ZDB-PUB-050404-6	15797554	Niell, C.M., and Smith, S.J.	Functional imaging reveals rapid development of visual response properties in the zebrafish tectum	Neuron	2005	45(6)	941-951	
ZDB-PUB-050727-16	16039565	Rinner, O., Makhankov, Y.V., Biehlmaier, O., and Neuhauss, S.C.	Knockdown of Cone-Specific Kinase GRK7 in Larval Zebrafish Leads to Impaired Cone Response Recovery and Delayed Dark Adaptation	Neuron	2005	47(2)	231-242	
ZDB-PUB-060616-11	16731508	Schneider, V.A., and Granato, M.	The Myotomal diwanka (lh3) Glycosyltransferase and Type XVIII Collagen Are Critical for Motor Growth Cone Migration	Neuron	2006	50(5)	683-695	
ZDB-PUB-070122-7	17196531	Smear, M.C., Tao, H.W., Staub, W., Orger, M.B., Gosse, N.J., Liu, Y., Takahashi, K., Poo, M.M., and Baier, H.	Vesicular Glutamate Transport at a Central Synapse Limits the Acuity of Visual Perception in Zebrafish	Neuron	2007	53(1)	65-77	
ZDB-PUB-070813-10	17678854	Inbal, A., Kim, S.H., Shin, J., and Solnica-Krezel, L.	Six3 represses nodal activity to establish early brain asymmetry in zebrafish	Neuron	2007	55(3)	407-415	
ZDB-PUB-071125-28	18031679	Godinho, L., Williams, P.R., Claassen, Y., Provost, E., Leach, S.D., Kamermans, M., and Wong, R.O.	Nonapical symmetric divisions underlie horizontal cell layer formation in the developing retina in vivo	Neuron	2007	56(4)	597-603	
ZDB-PUB-090714-1	17359917	Peng, C.Y., Yajima, H., Burns, C.E., Zon, L.I., Sisodia, S.S., Pfaff, S.L., and Sharma, K.	Notch and MAML signaling drives Scl-dependent interneuron diversity in the spinal cord	Neuron	2007	53(6)	813-827	
ZDB-PUB-961014-1109	7541636	Takeda, S., Funakoshi, T., and Hirokawa, N.	Tubulin dynamics in neuronal axons of living zebrafish embryos	Neuron	1995	14	1257-1264	
ZDB-PUB-961014-1139	2344406	Trevarrow, B., Marks, D.L., and Kimmel, C.B.	Organization of hindbrain segments in the zebrafish embryo	Neuron	1990	4	669-679	
ZDB-PUB-961014-275	2624743	Eisen, J.S., Pike, S.H., and Debu, B.	The growth cones of identified motoneurons in embryonic zebrafish select appropriate pathways in the absence of specific cellular interactions	Neuron	1989	2	1097-1104	
ZDB-PUB-961014-280	1352984	Ekker, M., Akimenko, M.A., BreMiller, R., and Westerfield, M.	Regional expression of three homeobox transcripts in the inner ear of zebrafish embryos	Neuron	1992	9	27-35	
ZDB-PUB-970102-11	7576645	Reppert, S.M., Weaver, D.R., Cassone, V.M., Godson, C., and Kolakowski, L.F., Jr.	Melatonin receptors are for the birds: molecular analysis of two receptor subtypes differentially expressed in chick brain	Neuron	1995	15	1003-1015	
ZDB-PUB-991129-3	10595509	Guo, S., Brush, J., Teraoka, H., Goddard, A., Wilson, S.W., Mullins, M.C., and Rosenthal, A.	Development of noradrenergic neurons in the zebrafish hindbrain requires BMP, FGF8, and the homeodomain protein Soulless/Phox2a	Neuron	1999	24	555	
ZDB-PUB-981106-5	none	Herrmann, K.	Teratogenic effects of retinoic acid and related substances on the early development of the zebrafish (Brachydanio rerio) as assessed by a novel scoring system	Toxicol. In Vitro	1995	9	267-283	
ZDB-PUB-070413-1	17416483	Seok, S.H., Baek, M.W., Lee, H.Y., Kim, D.J., Na, Y.R., Noh, K.J., Park, S.H., Lee, H.K., Lee, B.H., Ryu, D.Y., and Park, J.H.	Arsenite-induced apoptosis is prevented by antioxidants in zebrafish liver cell line	Toxicol. In Vitro	2007	21(5)	870-877	
ZDB-PUB-081114-6	18996465	Seibt, K.J., Oliveira, R.D., Rico, E.P., Dias, R.D., Bogo, M.R., and Bonan, C.D.	Antipsychotic drugs inhibit nucleotide hydrolysis in zebrafish (Danio rerio) brain membranes	Toxicol. In Vitro	2009	23(1)	78-82	
ZDB-PUB-090616-12	19486937	Lammer, E., Kamp, H.G., Hisgen, V., Koch, M., Reinhard, D., Salinas, E.R., Wendler, K., Zok, S., and Braunbeck, T.	Development of a flow-through system for the fish embryo toxicity test (FET) with the zebrafish (Danio rerio)	Toxicol. In Vitro	2009	23(7)	1436-1442	
ZDB-PUB-050623-4	15964169	Ibabe, A., Herrero, A., and Cajaraville, M.P.	Modulation of peroxisome proliferator-activated receptors (PPARs) by PPARalpha- and PPARgamma-specific ligands and by 17beta-estradiol in isolated zebrafish hepatocytes	Toxicol. In Vitro	2005	19(6)	725-735	
ZDB-PUB-060207-3	16446075	Senger, M.R., Rosemberg, D.B., Rico, E.P., de Bem Arizi, M., Dias, R.D., Bogo, M.R., and Bonan, C.D.	In vitro effect of zinc and cadmium on acetylcholinesterase and ectonucleotidase activities in zebrafish (Danio rerio) brain	Toxicol. In Vitro	2006	20(6)	954-958	
ZDB-PUB-020913-8	12215674	Dong, W., Teraoka, H., Yamazaki, K., Tsukiyama, S., Imani, S., Imagawa, T., Stegeman, J.J., Peterson, R.E., and Hiraga, T.	2,3,7,8-tetrachlorodibenzo-p-dioxin toxicity in the zebrafish embryo: local circulation failure in the dorsal midbrain is associated with increased apoptosis	Toxicol. Sci.	2002	69(1)	191-201	
ZDB-PUB-030730-11	12883077	Prasch, A.L., Teraoka, H., Carney, S.A., Dong, W., Hiraga, T., Stegeman, J.J., Heideman, W., and Peterson, R.E.	Aryl hydrocarbon receptor 2 mediates 2,3,7,8-tetrachlorodibenzo-p-dioxin developmental toxicity in zebrafish	Toxicol. Sci.	2003	76(1)	138-150	
ZDB-PUB-030826-17	12915709	Zodrow, J.M. and Tanguay, R.L.	2,3,7,8-Tetrachlorodibenzo-p-dioxin inhibits zebrafish caudal fin regeneration	Toxicol. Sci.	2003	76(1)	151-161	
ZDB-PUB-040109-30	14691204	Prasch, A.L., Andreasen, E.A., Peterson, R.E., and Heideman, W.	Interactions between TCDD and hypoxia signalling pathways in zebrafish: hypoxia decreases responses to TCDD in zebrafish embryos	Toxicol. Sci.	2004	78(1)	68-77	
ZDB-PUB-040621-4	15201444	Haendel, M.A., Tilton, F., Bailey, G.S., and Tanguay, R.L.	Developmental Toxicity of the Dithiocarbamate Pesticide Sodium Metam in Zebrafish	Toxicol. Sci.	2004	81(2)	390-400	
ZDB-PUB-050111-4	15635151	Antkiewicz, D.S., Burns, C.G., Carney, S.A., Peterson, R.E., and Heideman, W.	Heart Malformation is an Early Response to TCDD in Embryonic Zebrafish	Toxicol. Sci.	2005	84(2)	368-377	
ZDB-PUB-050621-3	14718644	Hill, A.J., Bello, S.M., Prasch, A.L., Peterson, R.E., and Heideman, W.	Water permeability and TCDD-induced edema in zebrafish early-life stages	Toxicol. Sci.	2004	78(1)	78-87	
ZDB-PUB-060113-1	16387744	King Heiden, T., Carvan, M.J., 3rd, and Hutz, R.J.	Inhibition of Follicular Development, Vitellogenesis and Serum 17{beta} Estradiol Concentrations in Zebrafish Following Chronic, Sublethal Dietary Exposure to 2,3,7,8,-Tetrachlorodibenzo-p-dioxin	Toxicol. Sci.	2006	90(2)	490-499	
ZDB-PUB-060130-6	16434501	Yu, R.M., Lin, C.C., Chan, P.K., Chow, E.S., Murphy, M.B., Chan, B.P., Muller, F., Strähle, U., and Cheng, S.H.	Four-dimensional Imaging and Quantification of Gene Expression in Early Developing Zebrafish (Danio rerio) Embryos	Toxicol. Sci.	2006	90(2)	529-538	
ZDB-PUB-060315-19	14657521	Dong, W., Teraoka, H., Tsujimoto, Y., Stegeman, J.J., and Hiraga, T.	Role of aryl hydrocarbon receptor in mesencephalic circulation failure and apoptosis in zebrafish embryos exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin	Toxicol. Sci.	2004	77(1)	109-116	
ZDB-PUB-060724-21	16848026	Villano, C.M., and White, L.A.	The aryl hydrocarbon receptor-signaling pathway and tissue remodeling: insights from the zebrafish (Danio rerio) model system.	Toxicol. Sci.	2006	92(1)	1-4	
ZDB-PUB-060906-7	16936225	Antkiewicz, D.S., Peterson, R.E., and Heideman, W.	Blocking Expression of AHR2 and ARNT1 in Zebrafish Larvae Protects Against Cardiac Toxicity of 2,3,7,8-Tetrachlorodibenzo-p-dioxin	Toxicol. Sci.	2006	94(1)	175-182	
ZDB-PUB-060908-1	14657522	Behra, M., Etard, C., Cousin, X., and Strahle, U.	The use of zebrafish mutants to identify secondary target effects of acetylcholine esterase inhibitors	Toxicol. Sci.	2004	77(2)	325-333	
ZDB-PUB-070122-20	17205975	Mukhi, S., and Patino, R.	Effects of Prolonged Exposure to Perchlorate on Thyroid and Reproductive Function in Zebrafish	Toxicol. Sci.	2007	96(2)	246-254	
ZDB-PUB-070907-18	17728286	Hillegass, J., Villano, C., Cooper, K., and White, L.	Matrix metalloproteinase-13 (MMP-13) is required for zebrafish (Danio rerio) development and is a target for glucocorticoids	Toxicol. Sci.	2007	100(1)	168-179	
ZDB-PUB-080218-13	18203687	Bohonowych, J.E., Zhao, B., Timme-Laragy, A., Jung, D., Di Giulio, R.T., and Denison, M.S.	Newspapers and Newspaper Ink Contain Agonists for the Ah Receptor	Toxicol. Sci.	2008	102(2)	278-290	
ZDB-PUB-080306-5	18281261	Hillegass, J.M., Villano, C.M., Cooper, K.R., and White, L.A.	Glucocorticoids alter craniofacial development and increase expression and activity of matrix metalloproteinases in developing zebrafish (Danio rerio)	Toxicol. Sci.	2008	102(2)	413-424	
ZDB-PUB-080408-4	18375544	Busquet, F., Nagel, R., von Landenberg, F., Mueller, S.O., Huebler, N., and Broschard, T.H.	Development of a new screening assay to identify proteratogenic substances using zebrafish Danio rerio embryo combined with an exogenous mammalian metabolic activation system (mDarT)	Toxicol. Sci.	2008	104(1)	177-188	
ZDB-PUB-080515-17	18477685	Mehta, V., Peterson, R.E., and Heideman, W.	2,3,7,8-Tetrachlorodibenzo-p-dioxin Exposure Prevents Cardiac Valve Formation in Developing Zebrafish	Toxicol. Sci.	2008	104(2)	303-311	
ZDB-PUB-081028-5	18936300	Lefebvre, K.A., Tilton, S.C., Bammler, T.K., Beyer, R.P., Srinouanprachan, S., Stapleton, P.L., Farin, F.M., and Gallagher, E.P.	Gene expression profiles in zebrafish brain after acute exposure to domoic acid at symptomatic and asymptomatic doses	Toxicol. Sci.	2009	107(1)	65-77	
ZDB-PUB-021016-10	12215654	Tillitt, D.E. and Papoulias, D.M.	2,3,7,8-Tetrachlorodibenzo-p-dioxin toxicity in the zebrafish embryo: Local circulation failure in the dorsal midbrain is associated with increased apoptosis	Toxicol. Sci.	2002	69(1)	1-2	
ZDB-PUB-031111-10	14600291	Hill, A., Howard, C.V., Strähle, U., and Cossins, A.	Neuro-developmental defects in zebrafish (Danio rerio) at environmentally relevant dioxin (TCDD) concentrations	Toxicol. Sci.	2003	76(2)	392-399	
ZDB-PUB-040804-6	15282404	Prasch, A.L., Heideman, W., and Peterson, R.E.	ARNT2 Is Not Required for TCDD Developmental Toxicity in Zebrafish	Toxicol. Sci.	2004	82(1)	250-258	
ZDB-PUB-050523-4	15901917	Heiden, T.K., Hutz, R.J., and Carvan, M.J. 3rd.	Accumulation, tissue distribution, and maternal transfer of dietary 2,3,7,8,-tetrachlorodibenzo-p-dioxin: impacts on reproductive success of zebrafish	Toxicol. Sci.	2005	87(2)	497-507	
ZDB-PUB-060207-2	16443690	Andreasen, E.A., Mathew, L.K., and Tanguay, R.L.	Regenerative Growth is Impacted by TCDD: Gene Expression Analysis Reveals Extracellular Matrix Modulation	Toxicol. Sci.	2006	92(1)	254-269	
ZDB-PUB-060419-1	16611622	Stehr, C.M., Linbo, T.L., Incardona, J.P., and Scholz, N.L.	The Developmental Neurotoxicity of Fipronil: Notochord Degeneration and Locomotor Defects in Zebrafish Embryos and Larvae	Toxicol. Sci.	2006	92(1)	270-278	
ZDB-PUB-061222-16	17003102	Andreasen, E.A., Mathew, L.K., Lohr, C.V., Hasson, R., and Tanguay, R.L.	Aryl Hydrocarbon Receptor Activation Impairs Extracellular Matrix Remodeling during Zebra Fish fin Regeneration	Toxicol. Sci.	2007	95(1)	215-226	
ZDB-PUB-070813-26	17686920	Jönsson, M.E., Jenny, M.J., Woodin, B.R., Hahn, M.E., and Stegeman, J.J.	Role of AHR2 in the Expression of Novel Cytochrome P450 1 Family Genes, Cell Cycle Genes, and Morphological Defects in Developing Zebrafish Exposed to 3,3',4,4',5-pentachlorobiphenyl or 2,3,7,8-tetrachlorodibenzo-p-dioxin	Toxicol. Sci.	2007	100(1)	180-193	
ZDB-PUB-080306-35	18308702	Yin, H.C., Tseng, H.P., Chung, H.Y., Ko, C.Y., Tzou, W.S., Buhler, D.R., and Hu, C.H.	Influence of TCDD on zebrafish CYP1B1 transcription during development	Toxicol. Sci.	2008	103(1)	158-168	
ZDB-PUB-080801-6	18660518	Grimes, A.C., Erwin, K.N., Stadt, H.A., Hunter, G.L., Gefroh, H.A., Tsai, H.J., and Kirby, M.L.	PCB126 Exposure Disrupts Zebrafish Ventricular and Branchial but Not Early Neural Crest Development	Toxicol. Sci.	2008	106(1)	193-205	
ZDB-PUB-090302-10	19233942	Timme-Laragy, A.R., Van Tiem, L.A., Linney, E.A., and Di Giulio, R.T.	Antioxidant responses and NRF2 in synergistic developmental toxicity of PAHs in zebrafish	Toxicol. Sci.	2009	109(2)	217-227	
ZDB-PUB-090601-10	19474218	Shi, X., Yeung, L.W., Lam, P.K., Wu, R.S., and Zhou, B.	Protein Profiles in Zebrafish (Danio rerio) Embryos Exposed to PFOS	Toxicol. Sci.	2009	110(2)	334-340	
ZDB-PUB-090616-20	19494032	Jenny, M.J., Karchner, S., Franks, D., Woodin, B.W., Stegeman, J.J., and Hahn, M.E.	Distinct roles of two zebrafish AHR repressors (AHRRa and AHRRb) in embryonic development and regulating the response to TCDD (2,3,7,8-tetrachlorodibenzo-p-dioxin)	Toxicol. Sci.	2009	110(2)	426-441	
ZDB-PUB-091023-35	19822598	Wang, M., Chan, L.L., Si, M., Hong, H., and Wang, D.	Proteomic analysis of hepatic tissue of zebrafish (Danio rerio) experimentally exposed to chronic microcystin-LR	Toxicol. Sci.	2010	113(1)	60-69	
ZDB-PUB-091101-24	19861644	Demicco, A., Cooper, K.R., Richardson, J.R., and White, L.A.	Developmental Neurotoxicity of Pyrethroid Insecticides in Zebrafish Embryos	Toxicol. Sci.	2010	113(1)	177-186	
ZDB-PUB-100302-11	20181659	Yang, L., Ho, N.Y., Müller, F., and Strähle, U.	Methyl mercury suppresses the formation of the tail primordium in developing zebrafish embryos	Toxicol. Sci.	2010	\ 	\ 	
ZDB-PUB-020218-3	11812923	Teraoka, H., Dong, W., Ogawa, S., Tsukiyama, S., Okuhara, Y., Niiyama, M., Ueno, N., Peterson, R.E., and Hiraga, T.	2,3,7,8-Tetrachlorodibenzo-p-dioxin toxicity in the zebrafish embryo: altered regional blood flow and impaired lower jaw development	Toxicol. Sci.	2002	65(2)	192-199	
ZDB-PUB-020807-20	12151636	Andreasen, E.A., Spitsbergen, J.M., Tanguay, R.L., Stegeman, J.J., Heideman, W., and Peterson, R.E.	Tissue-specific expression of AHR2, ARNT2, and CYP1A in zebrafish embryos and larvae: effects of developmental stage and 2,3,7,8-Tetrachlorodibenzo-p-dioxin exposure	Toxicol. Sci.	2002	68(2)	403-419	
ZDB-PUB-030602-12	12700413	Hen Chow, E.S. and Cheng, S.H.	Cadmium affects muscle type development and axon growth in zebrafish embryonic somitogenesis	Toxicol. Sci.	2003	73(1)	149-159	
ZDB-PUB-050221-6	15716485	Handley-Goldstone, H.M., Grow, M.W., and Stegeman, J.J.	Cardiovascular gene expression profiles of dioxin exposure in zebrafish embryos	Toxicol. Sci.	2005	85(1)	683-693	
ZDB-PUB-060517-22	16687390	Billiard, S., Timme-Laragy, A.R., Wassenberg, D.M., Cockman, C., and Di Giulio, R.T.	The Role of the Aryl Hydrocarbon Receptor Pathway in Mediating Synergistic Developmental Toxicity of Polycyclic Aromatic Hydrocarbons to Zebrafish	Toxicol. Sci.	2006	92(2)	526-536	
ZDB-PUB-070210-14	17234648	Cheshenko, K., Brion, F., Le Page, Y., Hinfray, N., Pakdel, F., Kah, O., Segner, H., and Eggen, R.I.	Expression of Zebra Fish Aromatase cyp19a and cyp19b Genes in Response to the Ligands of Estrogen Receptor and Aryl Hydrocarbon Receptor.	Toxicol. Sci.	2007	96(2)	255-267	
ZDB-PUB-070409-12	17400579	Nayak, A.S., Lage, C.R., and Kim, C.H.	Effects of Low Concentrations of Arsenic on the Innate Immune System of the Zebrafish (Danio Rerio)	Toxicol. Sci.	2007	98(1)	118-124	
ZDB-PUB-070907-17	17728282	Lipinski, R.J., Dengler, E., Kiehn, M., Peterson, R.E., and Bushman, W.	Identification and Characterization of Several Dietary Alkaloids as Weak Inhibitors of Hedgehog Signaling	Toxicol. Sci.	2007	100(2)	456-463	
ZDB-PUB-070912-2	17823451	Huang, C.C., Chen, P.C., Huang, C.W., and Yu, J.	Aristolochic Acid Induces Heart Failure in Zebrafish Embryos That is Mediated by Inflammation	Toxicol. Sci.	2007	100(2)	486-494	
ZDB-PUB-080728-9	18648088	Tilton, F., and Tanguay, R.L.	Exposure to sodium metam during zebrafish somitogenesis results in early transcriptional indicators of the ensuing neuronal and muscular dysfunction	Toxicol. Sci.	2008	106(1)	103-112	
ZDB-PUB-081218-18	19073994	Griffitt, R.J., Hyndman, K., Denslow, N.D., and Barber, D.S.	Comparison of molecular and histological changes in zebrafish gills exposed to metallic nanoparticles	Toxicol. Sci.	2009	107(2)	404-415	
ZDB-PUB-090318-11	19279074	King Heiden, T.C., Spitsbergen, J., Heideman, W., and Peterson, R.E.	Persistent Adverse Effects on Health and Reproduction Caused by Exposure of Zebrafish to 2,3,7,8-Tetrachlorodibenzo-p-dioxin During Early Development and Gonad Differentiation	Toxicol. Sci.	2009	109(1)	75-87	
ZDB-PUB-100309-15	20200220	Shi, X., and Zhou, B.	The Role of Nrf2 and MAPK Pathways in PFOS-induced Oxidative Stress in Zebrafish Embryos	Toxicol. Sci.	2010	\ 	\ 	
ZDB-PUB-961014-1227		Weis, J.S. and Perlmutter, A.	Technique for microinjecting materials into the eggs of fishes	Trans. Am. Fish. Soc.	1967	96	57-60	
ZDB-PUB-961014-329		Fuiman, L.A.	Burst-swimming performance of larval zebra danios and the effects of diel temperature fluctuations	Trans. Am. Fish. Soc.	1986	115	143-148	
ZDB-PUB-961014-34		Amend, D.F., Goven, B.A., and Elliot, D.G.	Etomidate: effective dosages for a new fish anesthetic	Trans. Am. Fish. Soc.	1982	111	337-341	
ZDB-PUB-961014-977	none	Sarot, D.A. and Perlmutter, A.	The toxicity of zinc to the immune response of zebrafish, Brachydanio rerio, injected with viral and bacteria antigens	Trans. Am. Fish. Soc.	1976	105	456-459	
ZDB-PUB-961014-33	none	Amend, D.F., Croy, T.R., Goven, B.A., Johnson, K.A., and McCarthy, D.H.	Transportation of fish in closed systems methods to control ammonia carbon dioxide pH and bacterial growth	Trans. Am. Fish. Soc.	1982	111	603-611	
ZDB-PUB-961014-869		Perlmutter, A. and Yu, M.L.	Use of fish eggs for direct assay of chromatographically separated components of silica gel plates	Trans. Am. Fish. Soc.	1968	97	204-207	
ZDB-PUB-961014-355		Goff, R.A.	The effects of increased atmosphere pressure on the developing embryo of the zebra fish, Brachydanio rerio (Hamilton)	Trans. Kansas Acad. Sci.	1940	43	401-410	
ZDB-PUB-030826-16	12922017	Fischer, A. and Gessler, M.	Hey genes in cardiovascular development	Trends Cardiovasc.	2003	13(6)	221-226	
ZDB-PUB-020111-1	11750698	Kratz, E., Dugas, J.C., and Ngai, J.	Odorant receptor gene regulation: implications from genomic organization	Trends Genet.	2002	18(1)	29-34	
ZDB-PUB-041104-9	15522454	Kohn, M., Kehrer-Sawatzki, H., Vogel, W., Graves, J.A., and Hameister, H.	Wide genome comparisons reveal the origins of the human X chromosome	Trends Genet.	2004	20(12)	598-603	
ZDB-PUB-050404-7	15797614	Plessy, C., Dickmeis, T., Chalmel, F., and Strähle, U.	Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes	Trends Genet.	2005	21(4)	207-210	
ZDB-PUB-070212-28	17275132	Semon, M., and Wolfe, K.H.	Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor	Trends Genet.	2007	23(3)	108-112	
ZDB-PUB-000622-4	10858660	Shen, M.M. and Schier, A.F.	The EGF-CFC gene family in vertebrate development	Trends Genet.	2000	16(7)	303-309	
ZDB-PUB-060315-2	16517001	Kohn, M., Hogel, J., Vogel, W., Minich, P., Kehrer-Sawatzki, H., Graves, J.A., and Hameister, H.	Reconstruction of a 450-My-old ancestral vertebrate protokaryotype	Trends Genet.	2006	22(4)	203-210	
ZDB-PUB-961014-539	8741852	Kawakami, K. and Hopkins, N.	Rapid identification of transgenic zebrafish	Trends Genet.	1996	12	9-10	
ZDB-PUB-961014-605	3076294	Kimmel, C.B. and Warga, R.M.	Cell lineage and developmental potential of cells in the zebrafish embryo	Trends Genet.	1988	4	68-74	
ZDB-PUB-011031-14	11585656	Pandey, A.	A zebrafish cDNA library resource	Trends Genet.	2001	17(10)	565-566	
ZDB-PUB-020905-1	12175805	Myers, D., Sepich, D. and Solnica-Krezel, L.	Convergence and extension in vertebrate gastrulae: cell movements according to or in search of identity?	Trends Genet.	2002	18(9)	447-455	
ZDB-PUB-040329-4	15036809	Strähle, U., Lam, C.S., Ertzer, R., and Rastegar, S.	Vertebrate floor-plate specification: variations on common themes	Trends Genet.	2004	20(3)	155-162	
ZDB-PUB-040819-3	15313551	Chen, W.J., Orti, G., and Meyer, A.	Novel evolutionary relationship among four fish model systems	Trends Genet.	2004	20(9)	424-431	
ZDB-PUB-060724-15	16844256	Amsterdam, A., and Hopkins, N.	Mutagenesis strategies in zebrafish for identifying genes involved in development and disease	Trends Genet.	2006	22(9)	473-478	
ZDB-PUB-961014-808	7660469	Mullins, M.	Genetic nomenclature guide. Zebrafish	Trends Genet.	1995	(Suppl.) 11	31-32	
ZDB-PUB-961014-323		Frank, S. and Zukal, R.	The leopard Danio, Hybrid, mutant or valid species?	Trop. Fish Hobby	1981	29	5-15	
ZDB-PUB-021105-16	12401383	Ho, Y.-L., Shau, Y.-W., Tsai, H.-J., Lin, L.-C., Huang, P.-J., and Hsieh, F.-J.	Assessment of zebrafish cardiac performance using Doppler echocardiography and power angiography	Ultrasound Med. Biol.	2002	28(9)	1137-1143	
ZDB-PUB-070912-11	17825980	Sun, L., Lien, C.L., and Shung, K.K.	In vivo cardiac imaging of adult zebrafish using high frequency ultrasound (45-75 MHz)	Ultrasound Med. Biol.	2008	34(1)	31-39	
ZDB-PUB-010118-1	11153658	Cameron, D.A.	Cellular proliferation and neurogenesis in the injured retina of adult zebrafish	Visual Neurosci.	2000	17(5)	789-797	
ZDB-PUB-961014-145	none	Burdak, V.D.	Arrangement of longitudinal scale rows in elasmoid fish scale covering	Vopr. Ikhtiol.	1981	21	168-170	
ZDB-PUB-961014-358	none	Golubev, A.V.	Role of chemical stimuli in group and spawning behavior of Brachydanio rerio (Hamilton-Buchanan) (Cyprinidae)	Vopr. Ikhtiol.	1984	24	1020-1027	
ZDB-PUB-961014-535		Kasumyan, A.O. and Ponomarev, V.Y.	Formation of food search responses to natural chemical signals in the ontogeny of cyprinidae	Vopr. Ikhtiol.	1990	30	447-456	
ZDB-PUB-961014-620		Konstantinov, A.S. and Martynova, V.V.	Effect of fluctuations in salinity on the growth of juvenile fish	Vopr. Ikhtiol.	1990	30	1004-1011	
ZDB-PUB-961014-533		Kasumyan, A.O. and Ponomarev, V.Y.	A study of the behaviour of Brachydanio rerio Hamilton-Buchanan under the influence of natural chemical food signals	Vopr. Ikhtiol.	1986	26	665-673	
ZDB-PUB-961014-621	none	Konstantinov, A.S. and Pelipenko, M.Y.	Use of zeolite to remove toxic substances from nitrogen metabolism of fishes	Vopr. Ikhtiol.	1983	24	1040-1042	
ZDB-PUB-961014-780	none	Mikheev, V.N.	Size of consumed preys and food selectivity in juvenile fish	Vopr. Ikhtiol.	1984	24	243-252	
ZDB-PUB-021112-5	12418659	Liu, X.J., Ni, I.H., and Wang, W.X.	Trophic transfer of heavy metals from freshwater zooplankton Daphnia magna to zebrafish Danio rerio	Water Res.	2002	36(18)	4563-4569	
ZDB-PUB-060424-2	16620905	Yeo, M.K., and Kang, M.	Photodecomposition of bisphenol A on nanometer-sized TiO(2) thin film and the associated biological toxicity to zebrafish (Danio rerio) during and after photocatalysis	Water Res.	2006	40(9)	1906-1914	
ZDB-PUB-961014-314		Fogels, A. and Sprague, J.B.	Comparative short-term tolerance of zebrafish, flagfish, and rainbow trout to five poisons including potential reference toxicants	Water Res.	1977	11	811-818	
ZDB-PUB-961014-686	none	Lee, S.K., Freitag, D., Steinberg, C., Kettrup, A., and Kim, Y.H.	Effects of dissolved humic materials on acute toxicity of some organic chemicals to aquatic organisms	Water Res.	1993	27	199-204	
ZDB-PUB-091215-14	19944443	Shen, X., Shao, Z., Xian, Q., Zou, H., Gao, S., and Zhang, J.	Detection method and toxicity study of a new disinfection by-product, 2,2,4-trichloro-5-methoxycyclopenta-4-ene-1,3-dione (TCMCD), in chlorinated drinking water	Water Res.	2010	44(3)	974-980	
ZDB-PUB-010927-7	11561640	Gellert, G. and Heinrichsdorff, J.	Effect of age on the susceptibility of zebrafish eggs to industrial wastewater	Water Res.	2001	35(15)	3754-3757	
ZDB-PUB-020107-1	11766804	Steger-Hartmann, T., Lange, R., Schweinfurth, H., Tschampel, M., and Rehmann, I.	Investigations into the environmental fate and effects of iopromide (ultravist), a widely used iodinated X-ray contrast medium	Water Res.	2002	36(1)	266-274	
ZDB-PUB-961014-1075	none	Steinberg, C.E., Lorenz, R., and Spieser, O.H.	Effects of atrazine on swimming behavior of zebrafish, Brachydanio rerio	Water Res.	1995	29	981-985	
ZDB-PUB-961014-753		Memmert, U.	Bioaccumulation of zinc in two freshwater organisms (Daphnia magna, crustacea and Brachydanio rerio, pisces)	Water Res.	1987	21	99-106	
ZDB-PUB-971203-4	none	Oberemm, A., Fastner, J., and Steinberg, C.E.W.	Effects of microcystin-LR and cyanobacterial crude extracts on embryo-larval development of zebrafish (Danio rerio)	Water Res.	1997	31(11)	2918-2921	
ZDB-PUB-980313-1	none	Baganz, D., Staaks, G., and Steinberg, C.	Impact of the cyanobacteria toxin, microcystin-LR on behaviour of zebrafish, Danio rerio	Water Res.	1998	32	948-952	
ZDB-PUB-000518-2	none	Ota, M., Saito, T., Yoshizaki, G., and Otsuki, A.	Vitellogenin-like gene expression in liver of male zebrafish (Danio rerio) by 1 mm 3-methylcholanthrene treatment: The possibility of a rapid and sensitive in vivo bioassay	Water Res.	2000	34(8)	2400-2403	
ZDB-PUB-020708-9	12092588	Keil, C., Forchert, A., Fastner, J., Szewzyk, U., Rotard, W., Chorus, I., and Krätke, R.	Toxicity and microcystin content of extracts from a Planktothrix bloom and two laboratory strains	Water Res.	2002	36(8)	2133-2139	
ZDB-PUB-961014-614	none	Klein, J., Brüggemann, R., Voigt, K., and Steinberg, C.E.W.	Advances in comparative analysis of adverse effects in aquatic ecosystems with emphasis on studies with humic substances and on progress in mathematical analysis techniques	Water Res.	1995	29	2261-2268	
ZDB-PUB-961014-181	7975714	Collodi, P., Miranda, C.L., Zhao, X., Buhler, D.R., and Barnes, D.W.	Inductino of zebrafish (Brachydanio rerio) P450 in vivo and in cell culture	Xenobiotica	1994	24	487-493	
ZDB-PUB-990512-4	3424868	Kasokat, T., Nagel, R., and Urich, K.	The metabolism of phenol and substituted phenols in zebra fish	Xenobiotica	1987	17(10)	1215-1221	
ZDB-PUB-020514-6	11993139	Zhu, L. and Shi, S.	Utilization of embryo development technique of Brachydanio rerio to evaluating toxicity on various chemicals	Ying Yong Sheng Tai Xue Bao	2002	13(2)	252-254	
ZDB-PUB-030919-11	12974010	Li, Y., Zhang, Q., Dai, S.	Impact of aldicarb and its complex pollution on DNA of zebrafish embryo	Ying Yong Sheng Tai Xue Bao	2003	14(6)	982-984	
ZDB-PUB-961014-1128		Thumann, M.E.	Die embryonale Entwicklung des Melanophorensystemsbei Brachydanio rerio (Hamilton-Buchanan)	Z. Mikro. Anat. Forsch.	1931	25	50-96	
ZDB-PUB-961014-1169	2820160	van Raamsdonk, W., Smit-Onel, M., Scholten, G., Hemrika, W., Robbe,B.	Metabolic specialization of spinal neurons and the myotomal muscle in post-hatching stages of the zebrafish, Brachydanio rerio. A histochemical study	Z. Mikro. Anat. Forsch.	1987	101	318-330	
ZDB-PUB-961014-915	4120948	Rahmann, H. and Voigtlander, R.	Comparative histophysiological tracer studies of various organ systems of Branchiostoma lanceolatum (Cephalochordata) and Brachydanio rerio (Teleostei)	Z. Zell. Mikro. Anat.	1973	137(3)	399-419	
ZDB-PUB-961014-86		Baumeister, H.G.	Lampbrush chromosomes and RNA-synthesis during early oogenesis of Brachydanio rerio (Cyprinidae, Teleostei)	Z. Zell. Mikro. Anat.	1973	145	145-150	
ZDB-PUB-961014-902	none	Rahmann, H.	Zum Stofftransport in Zentralnervensystem der Vertebraten. autoradiographische Untersuchungen mit P-32-Orthophosphat, H-3-Histidin, H-3-Cytidin, und H-3-Uridin an Mausen und Fischen	Z. Zell. Mikro. Anat.	1965	66	890	
ZDB-PUB-961014-908		Rahmann, H.	Protein- und Kohlenhydrat-Transportgeschwindigkeiten in ZNS von Teleosteern	Z. Zell. Mikro. Anat.	1968	78	289-304	
ZDB-PUB-961014-1073	none	Stefanelli, A. and Caravita, S.	Ultrsstruttura dei sistemi sinaptici del neurone di Mauthner di un teleosteo (Brachydanio rerio)	Z. Zell. Mikro. Anat.	1964	62	1-15	
ZDB-PUB-961014-909		Rahmann, H.	Syntheseort und Ferntransport von Proteinen im Fischirn	Z. Zell. Mikro. Anat.	1968	86	214-237	
ZDB-PUB-961014-911		Rahmann, H. and Hilbig, R.	Autoradiographische Untersuchungen ueber Stoffwechse-lunterschiede in verschiedenen Hirnstrukturn von Teleosteern sowie deren Beeinflussbarkeit nach motorischer Stimulation	Z. Zell. Mikro. Anat.	1972	133	501-518	
ZDB-PUB-040528-2	none	Glaser, V.	An Interview with Erez Raz, Ph.D	Zebrafish	2004	1(1)	9-11	
ZDB-PUB-040521-2	18248202	Fan, L., Crodian, J., Liu, X., Aleström, A., Aleström, P., and Collodi, P.	Zebrafish Embryo Cells Remain Pluripotent and Germ-Line Competent for Multiple Passages in Culture	Zebrafish	2004	1(1)	21-26	
ZDB-PUB-040521-5	18248205	Grush, J., Noakes, D.L.G., and Moccia, R.D.	The Efficacy of Clove Oil As An Anesthetic for the Zebrafish, Danio rerio (Hamilton)	Zebrafish	2004	1(1)	46-53	
ZDB-PUB-050628-1	18248224	Wong, K.Y., Gray, J. Hayward, C.J.C., Adolph, A.R., and Dowling, J.E.	Glutamatergic Mechanisms in the Outer Retina of Larval Zebrafish: Analysis of Electroretinogram b- and d-Waves Using a Novel Preparation	Zebrafish	2004	1(2)	121-131	
ZDB-PUB-050628-4	18248210	You, M, and Korzh, V.	Zebrafish in the Tropical One-North	Zebrafish	2005	1(4)	327-334	
ZDB-PUB-050628-7	none	McChesney, P.A., Elmore, L.W., and Holt, S.E.	Vertebrate Marine Species as Model Systems for Studying Telomeres and Telomerase	Zebrafish	2005	1(4)	349-355	
ZDB-PUB-050825-12	none	Muller, F.	Comparative Aspects of Alternative Laboratory Fish Models	Zebrafish	2005	2(1)	47-54	
ZDB-PUB-051121-3	18248171	Kamei, M., and Weinstein, B.M.	Long-Term Time-Lapse Fluorescence Imaging of Developing Zebrafish	Zebrafish	2005	2(2)	113-123	
ZDB-PUB-051221-12	18248194	Zeruth, G., and Pollenz, R.S.	Isolation and Characterization of a Dioxin-Inducible CYP1A1 Promoter/Enhancer Region from Zebrafish (Danio rerio)	Zebrafish	2005	2(3)	197-210	
ZDB-PUB-060323-3	18248185	Leung, Y.F., and Dowling, J.E.	Gene Expression Profiling of Zebrafish Embryonic Retina	Zebrafish	2005	2(4)	269-283	
ZDB-PUB-060623-12	none	Salas, C., Broglio, C., Duran, E., Gomez, A., Ocana, F.M., Jimenez-Moya, F., and Rodriguez, F.	Neuropsychology of Learning and Memory in Teleost Fish	Zebrafish	2006	3(2)	157-171	
ZDB-PUB-060623-15	18248261	Whitlock, K.E.	The Sense of Scents: Olfactory Behaviors in the Zebrafish	Zebrafish	2006	3(2)	203-213	
ZDB-PUB-060623-18	18248264	Panula, P., Sallinen, V., Sundvik, M., Kolehmainen, J., Torkko, V., Tiittula, A., Moshnyakov, M., and Podlasz, P.	Modulatory Neurotransmitter Systems and Behavior: Towards Zebrafish Models of Neurodegenerative Diseases	Zebrafish	2006	3(2)	235-247	
ZDB-PUB-061226-4	none	Miano, J.M., Georger, M.A., Rich, A., and De Mesy Bentley, K.L.	Ultrastructure of Zebrafish Dorsal Aortic Cells	Zebrafish	2006	3(4)	455-463	
ZDB-PUB-070427-5	none	Markovich, M.L., Rizzuto, N.V., and Brown, P.B.	Diet Affects Spawning in Zebrafish	Zebrafish	2007	4(1)	69-74	
ZDB-PUB-080309-16	18284331	Ekker, S.C., Stemple, D.L., Clark, M., Chien, C.B., Rasooly, R.S., and Javois, L.C.	Zebrafish genome project: bringing new biology to the vertebrate genome field	Zebrafish	2007	4(4)	239-251	
ZDB-PUB-080408-7	18377217	Barnes, D., Dowell, L., Forest, D., Parton, A., Pavicevic, P., and Kazianis, S.	Characterization of XM, a Novel Xiphophorus Melanoma-Derived Cell Line	Zebrafish	2006	3(3)	371-381	
ZDB-PUB-090116-3	19133824	O'Reilly-Pol, T., and Johnson, S.L.	Neocuproine ablates melanocytes in adult zebrafish	Zebrafish	2008	5(4)	257-264	
ZDB-PUB-090319-16	19292671	Siripattarapravat, K., Busta, A., Steibel, J.P., and Cibelli, J.	Characterization and In Vitro Control of MPF Activity in Zebrafish Eggs	Zebrafish	2009	6(1)	97-105	
ZDB-PUB-090706-15	19566407	Tong, E.Y., Collins, G.C., Greene-Colozzi, A.E., Chen, J.L., Manos, P.D., Judkins, K.M., Lee, J.A., Ophir, M.J., Laliberte, F.M., and Levesque, T.J.	Motion-Based Angiogenesis Analysis: A Simple Method to Quantify Blood Vessel Growth	Zebrafish	2009	6(3)	239-243	
ZDB-PUB-090828-7	19694523	Akhtar, T., Li, J., Olden, T., and Wallace, K.N.	Use of Phospholipase A(2) for Antigen Retrieval in Zebrafish Whole-Mount Immunohistochemistry	Zebrafish	2009	6(3)	223-227	
ZDB-PUB-090914-8	19715488	De Souza, A.G., Maccormack, T.J., Wang, N., Li, L., and Goss, G.G.	Large-Scale Proteome Profile of the Zebrafish (Danio rerio) Gill for Physiological and Biomarker Discovery Studies	Zebrafish	2009	6(3)	229-238	
ZDB-PUB-100112-11	20047468	Zeng, Z., Richardson, J., Verduzco, D., Mitchell, D.L., and Patton, E.E.	Zebrafish have a competent p53-dependent nucleotide excision repair pathway to resolve ultraviolet B-induced DNA damage in the skin	Zebrafish	2009	6(4)	405-415	
ZDB-PUB-100112-12	20047469	Anelli, V., Santoriello, C., Distel, M., Köster, R.W., Ciccarelli, F.D., and Mione, M.	Global repression of cancer gene expression in a zebrafish model of melanoma is linked to epigenetic regulation	Zebrafish	2009	6(4)	417-424	
ZDB-PUB-100309-1	20192849	Alfaro, J.M., Prades, A., Del Carmen Ramos, M., Peris, E., Ripoll-Gómez, J., Poyatos, M., and Burgos, J.S.	Biomedical Properties of a Series of Ruthenium-N-Heterocyclic Carbene Complexes Based on Oxidant Activity In Vitro and Assessment In Vivo of Biosafety in Zebrafish Embryos	Zebrafish	2010	\ 	\ 	
ZDB-PUB-100309-4	20192852	Coffin, A.B., Ou, H., Owens, K.N., Santos, F., Simon, J.A., Rubel, E.W., and Raible, D.W.	Chemical Screening for Hair Cell Loss and Protection in the Zebrafish Lateral Line	Zebrafish	2010	\ 	\ 	
ZDB-PUB-040521-3	18248203	Payne-Ferreira, T.L., Tong, K.W., and Yelick, P.C.	Maternal alk8 Promoter Fragment Directs Expression in Early Oocytes	Zebrafish	2004	1(1)	27-39	
ZDB-PUB-040528-3	none	Lang, M., and Gibert, Y.	The Second Regional Meeting on Fish Genetics and Development	Zebrafish	2004	1(1)	54-56	
ZDB-PUB-050628-2	18248225	Knowlton, M.N. and Kelly, G.M.	Zebrafish Mir Antagonizes Frizzled 7-Induced Gastrulation Defects	Zebrafish	2004	1(2)	133-144	
ZDB-PUB-050628-5	none	Balciunas, D., and Ekker, S.C.	Trapping Fish Genes with Transposons	Zebrafish	2005	1(4)	335-341	
ZDB-PUB-050628-8	18248175	Henry, C.A., Poage, C.T., McCarthy, M.B., Campos-Ortega, J., and Cooper, M.S.	Regionally Autonomous Segmentation Within Zebrafish Presomitic Mesoderm	Zebrafish	2005	2(1)	7-18	
ZDB-PUB-050825-13	18248222	Henken, D.B., Rasooly, R.S., Javois, L. and Hewitt, A.T.	The National Institutes of Health and the Growth of the Zebrafish as an Experimental Model Organism	Zebrafish	2004	1(2)	105-110	
ZDB-PUB-060323-2	18248184	Bilotta, J., Risner, M.L., Davis, E.C., and Haggbloom, S.T.	Assessing Appetitive Choice Discrimination Learning in Zebrafish	Zebrafish	2005	2(4)	259-268	
ZDB-PUB-060623-10	none	Volkoff, H., and Peter, R.E.	Feeding Behavior of Fish and Its Control	Zebrafish	2006	3(2)	131-140	
ZDB-PUB-060623-13	18248259	Saint-Amant, Louis	Development of Motor Networks in Zebrafish Embryos	Zebrafish	2006	3(2)	173-190	
ZDB-PUB-060623-16	18248262	Zhdanova, I.V.	Sleep in Zebrafish	Zebrafish	2006	3(2)	215-226	
ZDB-PUB-061226-2	none	Kabli, S., Alia, A., Spaink, H.P., Verbeek, F.J., and De Groot, H.J.M.	Magnetic Resonance Microscopy of the Adult Zebrafish	Zebrafish	2006	3(4)	431-439	
ZDB-PUB-061226-5	none	Welten, M.C.M., de Haan, S.B., ven den Boogert, N., Noordermeer, J.N., Lamers, G.E.M., Spaink, H.P., Meijer, A.H., and Verbeek, F.J.	ZebraFISH: Fluorescent In Situ Hybridization Protocol and Three-Dimensional Imaging of Gene Expression Patterns	Zebrafish	2006	3(4)	465-476	
ZDB-PUB-070427-2	none	Engeszer, R.E., Patterson, L.B., Rao, A.A., and Parichy, D.M.	Zebrafish in The Wild: A Review of Natural History And New Notes from The Field	Zebrafish	2007	4(1)	21-40	
ZDB-PUB-070427-3	none	Lassiter, C.S., and Linney, E.	Embryonic Expression And Steroid Regulation of Brain Aromatase cyp19a1b in Zebrafish (Danio Rerio)	Zebrafish	2007	4(1)	49-58	
ZDB-PUB-071118-8	none	Pierce, L.X., Harrison, D., and Liang, J.O.	The Time Reaper 5-Channel Automatic Liquid Dispenser: A New Tool for Studying Zebrafish Development	Zebrafish	2007	4(3)	169-177	
ZDB-PUB-080309-17	18284334	Lee, J.A., and Cole, G.J.	Generation of transgenic zebrafish expressing green fluorescent protein under control of zebrafish amyloid precursor protein gene regulatory elements	Zebrafish	2007	4(4)	277-286	
ZDB-PUB-080326-12	none	Hitchcock, P.F., and Raymond, P.A.	The Teleost Retina as a Model for Developmental and Regeneration Biology	Zebrafish	2004	1(3)	257-271	
ZDB-PUB-080327-18	18361682	Rojo, C., and González, E.	Apoptosis in Zebrafish Embryos: Removing Cells from Inappropriate Locations	Zebrafish	2008	5(1)	25-37	
ZDB-PUB-080415-6	18399791	Xing, J.G., Lee, L.E., Fan, L., Collodi, P., Holt, S.E., and Bols, N.C.	Initiation of a zebrafish blastula cell line on rainbow trout stromal cells and subsequent development under feeder-free conditions into a cell line, ZEB2J	Zebrafish	2008	5(1)	49-63	
ZDB-PUB-081029-2	18945197	Choe, S.K., Hirsch, N., Zhang, X., and Sagerström, C.G.	hnf1b genes in zebrafish hindbrain development	Zebrafish	2008	5(3)	179-187	
ZDB-PUB-090116-5	19133826	Hultman, K.A., Scott, A.W., and Johnson, S.L.	Small molecule modifier screen for kit-dependent functions in zebrafish embryonic melanocytes	Zebrafish	2008	5(4)	279-287	
ZDB-PUB-090116-8	19133830	Hecker, L., Khait, L., Sessions, S.K., and Birla, R.K.	Functional evaluation of isolated zebrafish hearts	Zebrafish	2008	5(4)	319-322	
ZDB-PUB-090319-17	19292673	Paridaen, J.T., Danesin, C., Elas, A.T., van de Water, S., Houart, C., and Zivkovic, D.	Apc1-Mediated Antagonism of Wnt/beta-Catenin Signaling Is Required for Retino-Tectal Pathfinding in the Zebrafish	Zebrafish	2009	6(1)	41-47	
ZDB-PUB-090422-14	19374548	Wang, X., Lee, J.E., and Dorsky, R.I.	Identification of wnt-responsive cells in the zebrafish hypothalamus	Zebrafish	2009	6(1)	49-58	
ZDB-PUB-090422-17	19374551	Hill, A.J., Heiden, T.C., Heideman, W., and Peterson, R.E.	Potential roles of arnt2 in zebrafish larval development	Zebrafish	2009	6(1)	79-91	
ZDB-PUB-090706-16	19566408	Siccardi, A.J., Garris, H.W., Jones, W.T., Moseley, D.B., D'Abramo, L.R., and Watts, S.A.	Growth and Survival of Zebrafish (Danio rerio) Fed Different Commercial and Laboratory Diets	Zebrafish	2009	6(3)	275-280	
ZDB-PUB-090828-8	19694524	Kim, S., Carlson, R., Zafreen, L., Rajpurohit, S.K., and Jagadeeswaran, P.	Modular, Easy-To-Assemble, Low-Cost Zebrafish Facility	Zebrafish	2009	6(3)	269-274	
ZDB-PUB-090914-9	19715489	Kawasaki, T., Saito, K., Mitsui, K., Ikawa, M., Yamashita, M., Taniguchi, Y., Takeda, S., Mitani, K., and Sakai, N.	Introduction of a Foreign Gene into Zebrafish and Medaka Cells Using Adenoviral Vectors	Zebrafish	2009	6(3)	253-258	
ZDB-PUB-090921-26	19761378	Ouyang, S.D., Pei, Y.Y., Weng, S.P., Lü, L., Yu, X.Q., and He, J.G.	Effective polyethyleneimine-mediated gene transfer into zebrafish cells	Zebrafish	2009	6(3)	245-251	
ZDB-PUB-091120-61	19916844	Ung, C.Y., Lam, S.H., and Gong, Z.	Comparative Transcriptome Analyses Revealed Conserved Biological and Transcription Factor Target Modules Between the Zebrafish and Human Tumors	Zebrafish	2009	6(4)	425-431	
ZDB-PUB-091204-14	19929220	Wyatt, R.A., Keow, J.Y., Harris, N.D., Haché, C.A., Li, D.H., and Crawford, B.D.	The Zebrafish Embryo: A Powerful Model System for Investigating Matrix Remodeling	Zebrafish	2009	6(4)	347-354	
ZDB-PUB-100112-13	20047470	Vlecken, D.H., and Bagowski, C.P.	LIMK1 and LIMK2 are important for metastatic behavior and tumor cell-induced angiogenesis of pancreatic cancer cells	Zebrafish	2009	6(4)	433-439	
ZDB-PUB-040521-1	18248201	Weinstein, B.	Something's Fishy in Bethesda: Zebrafish in the NIH Intramural Program	Zebrafish	2004	1(1)	12-20	
ZDB-PUB-040521-4	18248204	Darrow, K.O., and Harris, W.A.	Characterization and Development of Courtship in Zebrafish, Danio rerio	Zebrafish	2004	1(1)	40-45	
ZDB-PUB-040528-1	none	Glaser, V.	An Interview with John Postlethwait, Ph.D	Zebrafish	2004	1(1)	3-8	
ZDB-PUB-050125-1	18248232	Wong, A.C., and Van Eenennaam, A.L.	Gonadotropin hormone and receptor sequences from model teleost species	Zebrafish	2004	1(3)	203-221	
ZDB-PUB-050624-1	none	Reuter, A., Málaga-Trillo, E., Binkle, U., Rivera-Milla, E., Beltre, R., Zhou, Y., Bastmeyer, M., and Stuermer, C.A.O.	Evolutionary Analysis and Expression of Teleost Thy-1	Zebrafish	2004	1(3)	191-201	
ZDB-PUB-050628-3	18248235	Dodou, E., Barald, K.F., and Postlethwait, J.H.	Ventralized Zebrafish Embryo Rescue by Overexpression of Zic2a	Zebrafish	2004	1(3)	239-256	
ZDB-PUB-050628-6	18248212	Mulligan, T.S., and Farber, S.A.	A "Block and Rescue" Pharmacogenetic Approach to Dissecting a Biochemical Pathway Controlling Germ Cell Migration	Zebrafish	2005	1(4)	343-347	
ZDB-PUB-050628-9	18248177	Tan, J., Quek, S., and Chan, W.	Cloning, Genomic Organization, and Expression Analysis of Zebrafish Nuclear Receptor Coactivator, TIF2	Zebrafish	2005	2(1)	33-46	
ZDB-PUB-051121-2	18248170	Clay, H., and Ramakrishnan, L.	Multiplex Fluorescent In Situ Hybridization in Zebrafish Embryos Using Tyramide Signal Amplification	Zebrafish	2005	2(2)	105-111	
ZDB-PUB-051221-11	18248193	Qian, H., Zhu, Y., Ramsey, D.J., Chappell, R.L., Dowling, J.E., and Ripps, H.	Directional Asymmetries in the Optokinetic Response of Larval Zebrafish (Danio rerio)	Zebrafish	2005	2(3)	189-196	
ZDB-PUB-060623-14	18248260	Fleisch, V.C., and Neuhauss, S.C.F.	Visual Behavior in Zebrafish	Zebrafish	2006	3(2)	191-201	
ZDB-PUB-060623-11	18248257	Wright, D., Ward, A.J.W., Croft, D.P., and Krause, J.	Social Organization, Grouping, and Domestication in Fish	Zebrafish	2006	3(2)	141-155	
ZDB-PUB-060623-17	18248263	Miklosi, A., and Andrew, R.J.	The Zebrafish as a Model for Behavioral Studies	Zebrafish	2006	3(2)	227-234	
ZDB-PUB-061226-3	none	He, S., Salas-Vidal, E., Rueb, S., Krens, S.F.G., Meijer, A.H., Snaar-Jagalska, B.E., and Spaink, H.P.	Genetic and Transcriptome Characterization of Model Zebrafish Cell Lines	Zebrafish	2006	3(4)	441-453	
ZDB-PUB-070427-4	none	Parker, B., and Connaughton, V.P.	Effects of Nicotine on Growth And Development in Larval Zebrafish	Zebrafish	2007	4(1)	59-68	
ZDB-PUB-070907-1	none	Khut, P.Y., Tucker, B., Lardelli, M., and Wood, S.A.	Evolutionary and Expression Analysis of the Zebrafish Deubiquitylating Enzyme, Usp9	Zebrafish	2007	4(2)	95-101	
ZDB-PUB-070907-2	none	Tucker, B., and Lardelli, M.	A Rapid Apoptosis Assay Measuring Relative Acridine Orange Fluorescence in Zebrafish Embryos	Zebrafish	2007	4(2)	113-116	
ZDB-PUB-071118-10	none	Su, F., Juarez, M.A., Cooke, C.L., LaPointe, L., Shavit, J.A., Yamaoka, J.S., and Lyons, S.E.	Differential Regulation of Primitive Myelopoiesis in the Zebrafish by Spi-1/Pu.1 and C/ebp1	Zebrafish	2007	4(3)	187-199	
ZDB-PUB-071118-9	none	Itoh, N. and Konishi, M.	The Zebrafish fgf Family	Zebrafish	2007	4(3)	179-186	
ZDB-PUB-071227-23	none	Glaser, V.	An Interview with Robert Tanguay, Ph.D.	Zebrafish	2007	4(3)	163-168	
ZDB-PUB-080326-13	18248245	Zhou, Q., Froschauer, A., Schultheis, C., Schmidt, C., Bienert, G.P., Wenning, M., Dettai, A., and Volff, J.N.	Helitron Transposons on the Sex Chromosomes of the Platyfish Xiphophorus maculatus and Their Evolution in Animal Genomes	Zebrafish	2006	3(1)	39-52	
ZDB-PUB-080622-10	18554177	Klee, E.W.	The zebrafish secretome	Zebrafish	2008	5(2)	131-138	
ZDB-PUB-080622-9	18554176	Meli, R., Prasad, A., Patowary, A., Lalwani, M.K., Maini, J., Sharma, M., Singh, A.R., Kumar, G., Jadhav, V., Scaria, V., and Sivasubbu, S.	FishMap: a community resource for zebrafish genomics	Zebrafish	2008	5(2)	125-130	
ZDB-PUB-080826-6	18694329	Jezewski, P.A., Fang, P.K., Payne-Ferreira, T.L., and Yelick, P.C.	Zebrafish wnt9b Synteny and Expression During First and Second Arch, Heart, and Pectoral Fin Bud Morphogenesis	Zebrafish	2008	5(3)	169-177	
ZDB-PUB-090116-10	19133832	Sessa, A.K., White, R., Houvras, Y., Burke, C., Pugach, E., Baker, B., Gilbert, R., Look, A.T., and Zon, L.I.	The effect of a depth gradient on the mating behavior, oviposition site preference, and embryo production in the zebrafish, Danio rerio	Zebrafish	2008	5(4)	335-339	
ZDB-PUB-090116-6	19133827	Richardson, J., Lundegaard, P.R., Reynolds, N.L., Dorin, J.R., Porteous, D.J., Jackson, I.J., and Patton, E.E.	mc1r Pathway regulation of zebrafish melanosome dispersion	Zebrafish	2008	5(4)	289-295	
ZDB-PUB-090116-9	19133831	Burgos, J.S., Ripoll-Gomez, J., Alfaro, J.M., Sastre, I., and Valdivieso, F.	Zebrafish as a new model for herpes simplex virus type 1 infection	Zebrafish	2008	5(4)	323-333	
ZDB-PUB-090319-15	19292670	Shen, Y.C., Li, D., Al-Shoaibi, A., Bersano-Begey, T., Chen, H., Ali, S., Flak, B., Perrin, C., Winslow, M., Shah, H., Ramamurthy, P., Schmedlen, R.H., Takayama, S., and Barald, K.F.	A Student Team in a University of Michigan Biomedical Engineering Design Course Constructs a Microfluidic Bioreactor for Studies of Zebrafish Development	Zebrafish	2009	6(2)	201-213	
ZDB-PUB-090422-15	19374549	Faro, A., Boj, S.F., Ambrósio, R., van den Broek, O., Korving, J., and Clevers, H.	T-Cell Factor 4 (tcf7l2) Is the Main Effector of Wnt Signaling During Zebrafish Intestine Organogenesis	Zebrafish	2009	6(1)	59-68	
ZDB-PUB-090422-18	19374552	Cardona-Costa, J., Pérez-Camps, M., García-Ximénez, F., and Espinós, F.J.	Effect of Gametes Aging on Their Activation and Fertilizability in Zebrafish (Danio rerio)	Zebrafish	2009	6(1)	93-95	
ZDB-PUB-090921-27	19761379	de Velasco, E.M., Law, P.Y., and Rodríguez, R.E.	Mu opioid receptor from the zebrafish exhibits functional characteristics as those of Mammalian mu opioid receptor	Zebrafish	2009	6(3)	259-268	
ZDB-PUB-091215-27	19954344	Ignatius, M.S., and Langenau, D.M.	Zebrafish as a Model for Cancer Self-Renewal	Zebrafish	2009	6(4)	377-387	
ZDB-PUB-091215-28	19954345	Dovey, M., White, R.M., and Zon, L.I.	Oncogenic NRAS Cooperates with p53 Loss to Generate Melanoma in Zebrafish	Zebrafish	2009	6(4)	397-404	
ZDB-PUB-100112-8	20047465	Neumann, J.C., Dovey, J.S., Chandler, G.L., Carbajal, L., and Amatruda, J.F.	Identification of a heritable model of testicular germ cell tumor in the zebrafish	Zebrafish	2009	6(4)	319-327	
ZDB-PUB-100309-2	20192850	Paull, G.C., Filby, A.L., Giddins, H.G., Coe, T.S., Hamilton, P.B., and Tyler, C.R.	Dominance Hierarchies in Zebrafish (Danio rerio) and Their Relationship with Reproductive Success	Zebrafish	2010	\ 	\ 	
ZDB-PUB-100309-3	20192851	Kera, S.A., Agerwala, S.M., and Horne, J.H.	The Temporal Resolution of In Vivo Electroporation in Zebrafish: A Method for Time-Resolved Loss of Function	Zebrafish	2010	\ 	\ 	
ZDB-PUB-961014-77	none	Bartos, J. and Wirtz, P.	Marking fish eggs and fry by feeding dyes to the female parent	Zeitschrift Tierpsychol.	1984	65	103-107	
ZDB-PUB-961014-1192		Vinnikov, Y.A., Burovina, I.V., Gribakin, F.G., Lychakov, D.V., Allakhverdov, B.L., and Pogorelov, A.G.	Distribution of sodium, potassium, calcium, phosphorus and sulfur in the vestibular apparatus and eye of larva of the fish Brachydanio rerio	Zh. Evol. Biokhim. Fiziol.	1982	(J. Evol. Biochem. Physiol. 18)	369-377	
ZDB-PUB-961014-440	none	Hintze-Podufal, C. and Vogel, S.	Malformations of embryos of the zebra fish Brachydanio rerio (Hamilton-Buchanan) after treatment with detergents	Zool. Anz.	1985	215	9-17	
ZDB-PUB-961014-903		Rahmann, H.	Autoradiographische Untersuchungen zum Stofftransport im ZNS der Fische unter besonder Berucksichtigung der Glucose	Zool. Anz.	1966	(Suppl.) 29	485-492	
ZDB-PUB-961014-174		Chu, X.	Provisional revision of the genus Barilius in China (Pisces: Cyprinidae)	Zool. Res.	1984	5	95-102	
ZDB-PUB-961014-173		Chu, X.L.	A preliminary revision of fishes of the genus Danio from China	Zool. Res.	1981	2	145-156	
ZDB-PUB-031103-18	14578566	Yamasaki, K. and Nakayasu, H.	Visualization of erythrocytes in the zebrafish brain	Zoolog. Sci.	2003	20(9)	1071-1078	
ZDB-PUB-080722-6	18624572	Huang, W.T., Hsieh, J.C., Chiou, M.J., Chen, J.Y., Wu, J.L., and Kuo, C.M.	Application of RNAi Technology to the Inhibition of Zebrafish GtHalpha, FSHbeta, and LHbeta Expression and to Functional Analyses	Zoolog. Sci.	2008	25(6)	614-621	
ZDB-PUB-091023-5	19798918	Sawatari, E., Hashimoto, H., Matsumura, T., Iwata, Y., Yamamoto, N., Yokoyama, Y., and Wakamatsu, Y.	Cell growth-promoting activity of fluid from eye sacs of the bubble-eye goldfish (Carassius auratus)	Zoolog. Sci.	2009	26(4)	254-258	
ZDB-PUB-010621-1	none	Nagai, T., Yamaha, E., and Arai, K.	Histological differentiation of primordial germ cells in zebrafish	Zoolog. Sci.	2001	18(2)	215-223	
ZDB-PUB-090310-17	19267601	Kang, J.S., Kawakami, Y., Bekku, Y., Ninomiya, Y., Belmonte, J.C., and Oohashi, T.	Molecular Cloning and Developmental Expression of a Hyaluronan and Proteoglycan Link Protein Gene, crtl1/hapln1, in Zebrafish	Zoolog. Sci.	2008	25(9)	912-918	
ZDB-PUB-030702-1	12828417	Webb, S.E. and Miller, A.L.	Imaging intercellular calcium waves during late epiboly in intact zebrafish embryos	Zygote	2003	11(2)	175-182	
ZDB-PUB-090227-7	19222870	Sanhueza, D., Montoya, A., Sierralta, J., and Kukuljan, M.	Expression of voltage-activated calcium channels in the early zebrafish embryo	Zygote	2009	17(2)	131-135	
ZDB-PUB-971203-12	9276512	Ikegami, R., Rivera-Bennetts, A.K., Brooker, D.L., and Yager, T.D.	Effect of inhibitors of DNA replication on early zebrafish embryos: evidence for coordinate activation of multiple intrinsic cell-cycle checkpoints at the mid-blastula transition	Zygote	1997	5(2)	153-175	
ZDB-PUB-041104-7	15521712	Lee, K.W., Ho, S.M., Wong, C.H., Webb, S.E., and Miller, A.L.	Characterization of mid-spindle microtubules during furrow positioning in early cleavage period zebrafish embryos	Zygote	2004	12(3)	221-230	
ZDB-PUB-091120-41	19900345	Cardona-Costa, J., Francisco-Simão, M., Pérez-Camps, M., and García-Ximénez, F.	Micromanipulation medium osmolarity compromises zebrafish ( Danio rerio) embryo and cell survival in chimaerism experiments	Zygote	2009	\ 	\ 	
ZDB-PUB-020124-1	8913023	Bonsignorio, D., Perego, L., Del Giacco, L., and Cotelli, F.	Structure and macromolecular composition of the zebrafish egg chorion	Zygote	1996	4(2)	101-108	
ZDB-PUB-060616-2	16719950	Lee, K.W., Webb, S.E., and Miller, A.L.	Requirement for a localized, IP 3 R-generated Ca 2+ transient during the furrow positioning process in zebrafish zygotes	Zygote	2006	14(2)	143-155	
ZDB-PUB-090616-57	19519982	Pérez-Camps, M., Cardona-Costa, J., Francisco-Simao, M., and García-Ximénez, F.	Definition of three somatic adult cell nuclear transplant methods in zebrafish ( Danio rerio): before, during and after egg activation by sperm fertilization	Zygote	2010	18(1)	33-39	
ZDB-PUB-990108-15	9563681	Ikegami, R., Zhang, J., Rivera-Bennetts, A.K., and Yager, T.D.	Activation of the metaphase checkpoint and an apoptosis programme in the early zebrafish embryo, by treatment with the spindle-destabilising agent nocodazole	Zygote	1997	5	329-350	
ZDB-PUB-071210-36	18060571	Jin, Y., Wang, W., Sheng, G.D., Liu, W., and Fu, Z.	Hepatic and extrahepatic expression of estrogen-responsive genes in male adult zebrafish (Danio rerio) as biomarkers of short-term exposure to 17beta-estradiol	Environ. Monit. Assess.	2008	146(1-3)	105-111	
ZDB-PUB-010829-5	none	Fang, F.	A review of Chinese Danio species (Teleostei: Cyprinidae)	Act. Zootax. Sin.	2000	25(2)	214-227	
ZDB-PUB-961014-45	none	Ansari, B.A., Aslam, M., and Kumar, K.	Diazinon toxicity: activities of acetylcholinester-ase and phosphatases in the nervous tissue of zebra fish, Brachydanio rerio (Cyprinidae)	Acta Hydrochim. Hydrobiol.	1987	15	301-306	
ZDB-PUB-961014-48		Ansari, B.A. and Kumar, K.	Malathion toxicity: Embryotoxicity and survival of hatchlings of zebrafish (Brachydanio rerio)	Acta Hydrochim. Hydrobiol.	1986	14	567-570	
ZDB-PUB-040611-1	none	Duan, C., Ding, J., Schlueter, P.J., Li, Y., Zhang J., and Royer, T.	A zebrafish view of the insulin-like growth factor signaling pathway	Acta Zool. Sinica	2003	49	421-431	
ZDB-PUB-040526-5	15158689	Miller, J.D., and Neely, M.N.	Zebrafish as a model host for streptococcal pathogenesis	Acta. Trop.	2004	91(1)	53-68	
ZDB-PUB-031204-19	14631634	Ijiri, K.	Life-cycle experiments of medaka fish aboard the international space station	Adv. Space Biol. Med.	2003	9	201-216	
ZDB-PUB-961014-871		Petrovicky, I.	Krizeni druhu Brachydanio rerio a Brachydanio frankei	Akrarium a terarium	1964	7	5-6 and 66-69	
ZDB-PUB-961014-1228	4112714	Weiss, P.	Hepatic ultrastructure in two species of normal fasted and gravid teleost fishes	Am. J. Anat.	1972	133(3)	317-331	
ZDB-PUB-961014-451		Hisaoka, K.K. and Firlit, C.F.	The localization of nucleic acids during oogenesis in the zebrafish	Am. J. Anat.	1962	110	203-215	
ZDB-PUB-961014-1211	5822973	Waterman, R.E.	Development of the lateral musculature in the teleost, Brachydanio rerio: A fine structural study	Am. J. Anat.	1969	125(4)	457-493	
ZDB-PUB-980722-20	9688889	Warren, K.S. and Fishman, M.C.	Physiological genomics: mutant screens in zebrafish	Am. J. Physiol.	1998	275	H1-H7	
ZDB-PUB-961014-56	none	Athenstaedt, H.	Functional polarity' of the spinal cord caused by its longitudinal electric dipole moment	Am. J. Physiol.	1984	247	R482-R487	
ZDB-PUB-060724-30	16857889	Aslamkhan, A.G., Thompson, D.M., Perry, J.L., Bleasby, K., Wolff, N.A., Barros, S., Miller, D.S., and Pritchard, J.B.	The flounder organic anion transporter (fOat) has sequence, function and substrate specificity similarity to both mammalian Oats 1 and 3	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2006	291(6)	R1773-R1780	
ZDB-PUB-060921-10	16966387	van der Meulen, T., Schipper, H., van den Boogaart, J.G., Huising, M.O., Kranenbarg, S., and van Leeuwen, J.L.	Endurance exercise differentially stimulates heart and axial muscle development in zebrafish (Danio rerio)	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2006	291(4)	1040-1048	
ZDB-PUB-070813-25	17686885	Nakada, T., Hoshijima, K., Esaki, M., Nagayoshi, S., Kawakami, K., and Hirose, S.	Localization of ammonia transporter Rhcg1 in mitochondrion-rich cells of yolk sac, gill, and kidney of zebrafish and its ionic strength-dependent expression	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2007	293(4)	R1743-1753	
ZDB-PUB-070920-14	17855494	Craig, P.M., Wood, C.M., and McClelland, G.B.	Oxidative stress response and gene expression with acute copper exposure in zebrafish (Danio rerio)	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2007	293(5)	R1882-R1892	
ZDB-PUB-090105-2	19091910	Li, M., Li, Y., Lu, L., Wang, X., Gong, Q., and Duan, C.	Structural, gene expression, and functional analysis of the Fugu (Takifugu rubripes) insulin-like growth factor binding protein-4 gene	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(3)	R588-R566	
ZDB-PUB-090217-5	19193938	Chang, W.J., Horng, J.L., Yan, J.J., Hsiao, C.D., and Hwang, P.P.	The transcription factor, glial cell missing 2, is involved in differentiation and functional regulation of H+-ATPase-rich cells in zebrafish (Danio rerio)	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(4)	R1192-R1201	
ZDB-PUB-090227-13	19225141	Sánchez, E., Rubio, V.C., Thompson, D.A., Metz, J., Flik, G., Millhauser, G.L., and Cerda-Reverter, J.M.	Phosphodiesterase inhibitor-dependent inverse agonism of agouti-related protein on melanocortin 4 receptor in sea bass (Dicentrarchus labrax)	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(5)	R1293-R1306	
ZDB-PUB-090318-15	19279294	Wang, Y.F., Tseng, Y.C., Yan, J.J., Hiroi, J., and Hwang, P.P.	Role of SLC12A10.2, a Na-Cl cotransporter-like protein, in a Cl uptake mechanism in zebrafish (Danio rerio)	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(5)	R1650-R1660	
ZDB-PUB-090616-52	19515979	Steele, S.L., Lo, K.H., Li, V.W., Cheng, S.H., Ekker, M., and Perry, S.F.	Loss of M2 muscarinic receptor function inhibits development of hypoxic bradycardia and alters cardiac {beta}-adrenergic sensitivity in larval zebrafish Danio rerio	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	297(2)	R412-R420	
ZDB-PUB-090929-6	19776250	Castillo, J., Crespo, D., Capilla, E., Diaz, M., Chauvigne, F., Cerdà, J., and Planas, J.V.	Evolutionary structural and functional conservation of an ortholog of the GLUT2 glucose transporter gene (SLC2A2) in zebrafish	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	297(5)	R1570-R1581	
ZDB-PUB-091005-7	19793957	Musson, M.C., Jepeal, L.I., Mabray, P.D., Zhdanova, I.V., Cardoso, W.V., and Wolfe, M.M.	Expression of Glucose-Dependent-Insulinotropic Polypeptide (GIP) in the Zebrafish	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	297(6)	R1803-R1812	
ZDB-PUB-050617-1	15947067	Pan, T.C., Liao, B.K., Huang, C.J., Lin, L.Y., and Hwang, P.P.	Epithelial Ca2+ Channel Expression and Ca2+ uptake in Developing Zebrafish	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2005	289(4)	R1202-1211	
ZDB-PUB-060616-19	16741137	Biga, P.R., and Goetz, F.W.	Zebrafish and giant danio as models for muscle growth: Determinate versus indeterminate growth as determined by morphometric analysis	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2006	291(5)	R1327-R1337	
ZDB-PUB-070212-26	17272665	Horng, J.L., Lin, L.Y., Huang, C.J., Katoh, F., Kaneko, T., and Hwang, P.P.	Knockdown of V-ATPase subunit A ({alpha}tp6v1{alpha}) impairs acid secretion and ion balance in zebrafish Danio rerio	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2007	292(5)	R2068-2076	
ZDB-PUB-071210-8	18046018	Shmukler, B.E., Clark, J.S., Hsu, A., Vandorpe, D.H., Stewart, A.K., Kurschat, C.E., Choe, S.K., Zhou, Y., Amigo, J., Paw, B.H., and Alper, S.L.	Zebrafish Ae2.2 encodes a second Slc4a2 anion exchanger	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2008	294(3)	R1081-R1091	
ZDB-PUB-071219-16	18077507	Alsop, D., and Vijayan, M.M.	Development of the corticosteroid stress axis and receptor expression in zebrafish	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2008	294(3)	R711-R719	
ZDB-PUB-081029-7	18945954	Esbaugh, A.J., Perry, S.F., and Gilmour, K.M.	Hypoxia-inducible carbonic anhydrase IX expression is insufficient to alleviate intracellular metabolic acidosis in the muscle of zebrafish, Danio rerio	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(1)	R150-R160	
ZDB-PUB-081110-7	18987288	Craig, P.M., Galus, M., Wood, C.M., and McClelland, G.B.	Dietary iron alters waterborne-copper induced gene expression in softwater acclimated zebrafish (Danio rerio)	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(2)	R362-R373	
ZDB-PUB-081218-17	19073903	Tseng, D.Y., Chou, M.Y., Tseng, Y.C., Hsiao, C.D., Huang, C.J., Kaneko, T., and Hwang, P.P.	Effects of Stanniocalcin 1 on calcium uptake in zebrafish (Danio rerio) embryo	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(3)	R549-R557	
ZDB-PUB-090526-25	19458281	Tseng, Y.C., Chen, R.D., Lee, J.R., Liu, S.T., Lee, S.J., and Hwang, P.P.	Specific Expression and Regulation of Glucose Transporters in Zebrafish Ionocytes	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	297(2)	R275-R290	
ZDB-PUB-090731-17	19641131	Perry, S.F., Vulesevic, B., Grosell, M., and Bayaa, M.	Evidence that SLC26 anion transporters mediate branchial chloride uptake in adult zebrafish (Danio rerio)	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	297(4)	R988-R997	
ZDB-PUB-100211-12	20130228	Mann, K.D., Hoyt, C., Feldman, S., Blunt, L., Raymond, A., and Page-McCaw, P.S.	Cardiac response to startle stimuli in larval zebrafish: sympathetic and parasympathetic components	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2010	\ 	\ 	
ZDB-PUB-050711-4	15994372	van der Meer, D.L., van den Thillart, G.E., Witte, F., de Bakker, M.A., Besser, J., Richardson, M.K., Spaink, H.P., Leito, J.T., and Bagowski, C.P.	Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2005	286(5)	R1512-1519	
ZDB-PUB-060906-21	16946087	Esaki, M., Hoshijima, K., Kobayashi, S., Fukuda, H., Kawakami, K., and Hirose, S.	Visualization in zebrafish larvae of Na+ uptake in mitochondrion-rich cells whose differentiation is dependent on foxi3{alpha}	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2007	292(1)	R470-R480	
ZDB-PUB-080622-25	18565835	Olson, K.R., Healy, M.J., Qin, Z., Skovgaard, N., Vulesevic, B., Duff, D.W., Whitfield, N.L., Yang, G., Wang, R., and Perry, S.F.	Hydrogen Sulfide as an Oxygen Sensor in Trout Gill Chemoreceptors	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2008	295(2)	R669-R680	
ZDB-PUB-090318-14	19279291	Wang, X., Lu, L., Li, Y., Li, M., Chen, C., Feng, Q., Zhang, C., and Duan, C.	Molecular and functional characterization of two distinct IGF binding protein-6 genes in zebrafish	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(5)	R1348-R1357	
ZDB-PUB-090424-30	19386990	Liao, B.K., Chen, R.D., and Hwang, P.P.	Expression regulation of Na+-K+-ATPase {alpha}1-subunit subtypes in zebrafish gill ionocytes	Am. J. Physiol. Regul. Integr. Comp. Physiol.	2009	296(6)	R1897-R1906	
ZDB-PUB-990224-9	9950931	Barrionuevo, W.R. and Burggren, W.W.	O2 consumption and heart rate in developing zebrafish (Danio rerio): influence of temperature and ambient O2	Am. J. Physiol. Regul. Integr. Comp. Physiol.	1999	276	R505-R513	
ZDB-PUB-030106-8	none	Olsson, P.-E., Westerlund, L., Teh, S.J., Billsson, K., Berg, A.H., Tysklind, M., Nilsson, J., Eriksson, L.-O., and Hinton, D.E.	Effects of maternal exposure to estrogen and PCB on different life stages of zebrafish Danio rerio	Ambio	1999	28(1)	100-106	
ZDB-PUB-990201-4	none	Johansson, N., J.E. Kihlstrom, and A. Wahlberg	Low pH values shown to affect developing fish eggs, (Brachydanio rerio) Ham.-Buch	Ambio	1973	2	42-43	
ZDB-PUB-031014-3	14551668	Nilsen, B.M., Berg, K., Eidem, J.K., Kristiansen, S.I., Brion, F., Porcher, J.M., and Goksoyr, A.	Development of quantitative vitellogenin-ELISAs for fish test species used in endocrine disruptor screening	Anal. Bioanal. Chem.	2004	378(3)	621-633	
ZDB-PUB-091005-6	19789858	Meng, X., Bartholomew, C., and Craft, J.A.	Differential expression of vitellogenin and oestrogen receptor genes in the liver of zebrafish, Danio Rerio	Anal. Bioanal. Chem.	2010	396(2)	625-630	
ZDB-PUB-961014-1175	7114488	van-Raamsdonk, W., van-Veer, L., Veeken, K., Heyting, C., and Pool, C.W.	Differentiation of muscle fiber types in the teleost, Brachydanio rerio, the zebrafish. Posthatching development	Anat. Embryol.	1982	164	51-62	
ZDB-PUB-021018-10	12021913	Stoiber, W., Haslett, J.R., Steinbacher,P., Freimuller, M., and Sanger, A.M.	Tonic fibres in axial muscle of cyprinid fish larvae: their definition, possible origins and functional importance	Anat. Embryol.	2002	205(2)	113-124	
ZDB-PUB-970124-6	8827327	Rupp, B., Wullimann, M.F., and Reichert, H.	The zebrafish brain: a neuroanatomical comparison with the goldfish	Anat. Embryol.	1996	194	187-203	
ZDB-PUB-001018-1	11089930	Wullimann, M.F. and Knipp, S.	Proliferation pattern changes in the zebrafish brain from embryonic through early postembryonic stages	Anat. Embryol.	2000	202	385-400	
ZDB-PUB-961014-1162		van-Raamsdonk, W., Pool, C.W., and teKronnie, G.	Differentiation of the muscle fiber types in the teleost Brachydanio rerio	Anat. Embryol.	1978	153	137-155	
ZDB-PUB-990406-3	10195307	Wullimann M.F. and Puelles, L.	Postembryonic neural proliferation in the zebrafish forebrain and its relationship to prosomeric domains	Anat. Embryol.	1999	199	329-348	
ZDB-PUB-020219-10	14517415	Serbedzija, G.N., Flynn, E., and Willett, C.E.	Zebrafish angiogenesis: A new model for drug screening	Angiogenesis	1999	3(4)	353-359	
ZDB-PUB-061020-60	17051341	Haldi, M., Ton, C., Seng, W.L., and McGrath, P.	Human melanoma cells transplanted into zebrafish proliferate, migrate, produce melanin, form masses and stimulate angiogenesis in zebrafish	Angiogenesis	2006	9(3)	139-151	
ZDB-PUB-041228-12	15609079	Seng, W.L., Eng, K., Lee, J., and McGrath, P.	Use of a monoclonal antibody specific for activated endothelial cells to quantitate angiogenesis in vivo in zebrafish after drug treatment	Angiogenesis	2004	7(3)	243-253	
ZDB-PUB-080922-12	18798004	Cirone, P., Lin, S., Griesbach, H.L., Zhang, Y., Slusarski, D.C., and Crews, C.M.	A role for planar cell polarity signaling in angiogenesis	Angiogenesis	2008	11(4)	347-360	
ZDB-PUB-090819-11	19685150	Harfouche, R., Basu, S., Soni, S., Hentschel, D.M., Mashelkar, R.A., and Sengupta, S.	Nanoparticle-mediated targeting of phosphatidylinositol-3-kinase signaling inhibits angiogenesis	Angiogenesis	2009	12(4)	325-338	
ZDB-PUB-961014-351	none	Gleason, P.E., Weber, P.G., and Weber, S.P.	Effects of group size on avoidance learning in zebra fish Brachydanio rerio (Pisces: Cyprinidae)	Anim. Learn. Behav.	1977	5	213-216	
ZDB-PUB-051116-5	16285872	Schier, A.F., and Talbot, W.S.	Molecular Genetics of Axis Formation in Zebrafish	Annu. Rev. Genet.	2005	39	561-613	
ZDB-PUB-010511-5	11335794	Navara, C.S., Benyumov, A., Vassilev, A., Narla, R.K., Ghosh, P., and Uckun, F.M.	Vanadocenes as potent anti-proliferative agents disrupting mitotic spindle formation in cancer cells	Anticancer Drugs	2001	12(4)	369-376	
ZDB-PUB-090706-5	19561178	Youssef, N., Sheik, C.S., Krumholz, L.R., Najar, F.Z., Roe, B.A., and Elshahed, M.S.	A Comparative study of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys	Appl. Environ. Microbiol.	2009	75(16)	5227-5236	
ZDB-PUB-061221-15	196549	Seeley, R.J., Perlmutter, A., and Seeley, V.A.	Inheritance and longevity of infectious pancreatic necrosis virus in the zebra fish, Brachydanio rerio (Hamilton-Buchanan)	Appl. Environ. Microbiol.	1977	34(1)	50-55	
ZDB-PUB-961014-1201	\ 	VonHertell, U., Hörstgen-Schwark, G., Langholz, H.J., and Jung, B.	Family studies on genetic variability in growth and reproductive performance between and within test fish populations of the zebrafish Brachydanio-rerio	Aquaculture	1990	85	307-315	
ZDB-PUB-961014-1207	\ 	Waltman, W.D., Shotts, E.B., and Blazer, V.S.	Recovery of Edwardsiella Ictaluri from Danio (Danio Devario)	Aquaculture	1985	46	63-66	
ZDB-PUB-980224-7	none	Horvath, L. and Orbán, L.	Genome and gene manipulation in the common carp	Aquaculture	1995	129	157-181	
ZDB-PUB-980928-3	none	Volckaert, F., Poncelet, A.C., Hellemans, B., Ollevier, F., Martial, J.A., and Belayew, A.	In vivo expression of a tilapia prolactin 1-luciferase fusion gene in African catfish and zebrafish	Aquaculture	1995	137(1-4)	187	
ZDB-PUB-010822-1	none	Khoo, H.-W., Ang, L.-H., Lim, H.-B., and Wong, K.-Y.	Sperm cells as vectors for introducing foreign DNA into zebrafish	Aquaculture	1992	107(1)	1-19	
ZDB-PUB-961014-1289	\ 	Yamazaki, F.	Sex control and manipulation in fish	Aquaculture	1983	33	329-354	
ZDB-PUB-961014-118	none	Bouguenec, V.	Oligochaetes tubificidae and enchytraeidae as food in fish rearing: a review and preliminary tests	Aquaculture	1992	102	201-217	
ZDB-PUB-091113-4	none	Ramsay, J.M., Feist, G.W., Varga, Z.M., Westerfield, M., Kent, M.L., and Schreck, C.B.	Whole-body cortisol is an indicator of crowding stress in adult zebrafish, Danio rerio	Aquaculture	2006	258(1-4)	565-574	
ZDB-PUB-091113-5	none	Ramsay, J.M., Feist, G.W., Varga, Z.M., Westerfield, M., Kent, M.L., and Schreck, C.B.	Whole-body cortisol response of zebrafish to acute net handling stress	Aquaculture	2009	297(1-4)	157-162	
ZDB-PUB-961014-775		Meyer, R.	Ein pladdyer fur die fast vergessenen barblinge der gattungen Brachydanio und danio	Aquarien-Terrar. Mschr. Ornith. Vivar.	1986	33	8-10	
ZDB-PUB-961014-854		Palicka, J.	Brachydanio albolineatus	Aquarium (Den Haag)	1987	57	227-228	
ZDB-PUB-961014-1186		Vente, J.	Striped, spotted and flashing-fast fishes	Aquarium, Den Haag	1983	53	192-196	
ZDB-PUB-961014-1306	none	Zukal, R.	Brachydanio rerio	Aquarium, Den Haag	1982	52	243-244	
ZDB-PUB-961014-796		Mooren, P. and Mooren, J.	Is a Leopard a Zebra?	Aquarium, Den Haag	1983	53	55-56	
ZDB-PUB-961014-1301	none	Zhang, T.T., Rawson, D.M., and Morris, G.J.	Cryopreservation of pre-hatch embryos of zebrafish (Brachydanio rerio)	Aquatic Liv. Res.	1993	6	145-153	
ZDB-PUB-040319-6	15025169	Carlsson, G., and Norrgren, L.	Synthetic musk toxicity to early life stages of zebrafish (Danio rerio)	Arch. Environ. Contam. Toxicol.	2004	46(1)	102-105	
ZDB-PUB-060124-22	16418895	Kammann, U.,. Vobach, M., and Wosniok, W.	Toxic Effects of Brominated Indoles and Phenols on Zebrafish Embryos	Arch. Environ. Contam. Toxicol.	2006	51(1)	97-102	
ZDB-PUB-060623-9	16783621	Orn, S., Yamani, S., and Norrgren, L.	Comparison of vitellogenin induction, sex ratio, and gonad morphology between zebrafish and Japanese medaka after exposure to 17alpha-ethinylestradiol and 17beta-trenbolone	Arch. Environ. Contam. Toxicol.	2006	51(2)	237-243	
ZDB-PUB-961014-1257	none	Wicklund, A., Norrgren, L., and Runn, P.	The influence of cadmium and zinc on cadmium turnover in the zebrafish Brachydanio-rerio	Arch. Environ. Contam. Toxicol.	1990	19	348-353	
ZDB-PUB-961014-133	2353841	Bresch, H., Beck, H., Ehlermann, D., Schlaszus, H., and Urbanek, M.	A long-term toxicity test comprising reproduction and growth of zebrafish with 4-chloroaniline	Arch. Environ. Contam. Toxicol.	1990	19	419-427	
ZDB-PUB-961014-205	1898110	Dave, G. and Xiu, R.	Toxicity of mercury, copper, nickel, lead, and cobalt to embryos and larvae of zebrafish, Brachydanio rerio	Arch. Environ. Contam. Toxicol.	1991	21	126-134	
ZDB-PUB-961014-981	none	Schaefers, C. and Nagel, R.	Effects of 3,4-Dichloroaniline on fish populations: comparison between R-strategists and K-strategists. A complete life cycle test with the guppy Poecilia reticulata	Arch. Environ. Contam. Toxicol.	1991	21	297-302	
ZDB-PUB-060719-3	16823521	Orn, S., Svenson, A., Viktor, T., Holbech, H., and Norrgren, L.	Male-Biased Sex Ratios and Vitellogenin Induction in Zebrafish Exposed to Effluent Water from a Swedish Pulp Mill	Arch. Environ. Contam. Toxicol.	2006	51(3)	445-451	
ZDB-PUB-961014-1258	3377538	Wicklund, A., Runn, P., and Norrgren, L.	Cadmium and zinc interactions in fish: effects of zinc on the uptake, organ distribution, and elimination of 109Cd in the zebra fish, Brachydanio rerio	Arch. Environ. Contam. Toxicol.	1988	17	343-354	
ZDB-PUB-970324-11	8854970	Oulmi, Y. and Braunbeck, T.	Toxicity of 4-chloroaniline in early life-stages of zebrafish (Brachydanio rerio): I. cytopathology of liver and kidney after microinjection	Arch. Environ. Contam. Toxicol.	1996	30(3)	390-402	
ZDB-PUB-980629-5	9601919	Örn, S., Andersson, P.L., Förlin, L., Tysklind, M., and Norrgren, L.	The impact on reproduction of an orally administered mixture of selected PCBs in zebrafish (Danio rerio)	Arch. Environ. Contam. Toxicol.	1998	35	52-57	
ZDB-PUB-990316-3	9888962	Labrot, F., Narbonne, J.F., Ville, P., Saint Denis, M., and Ribera, D.	Acute toxicity, toxicokinetics, and tissue target of lead and uranium in the clam Corbicula fluminea and the worm Eisenia fetida: comparison with the fish Brachydanio rerio	Arch. Environ. Contam. Toxicol.	1999	36	167-178	
ZDB-PUB-990628-28	10341046	Burkhardt-Holm, P., Oulmi, Y., Schroeder, A., Storch, V., and Braunbeck, T.	Toxicity of 4-chloroaniline in early life stages of zebrafish (Danio rerio): II. Cytopathology and regeneration of liver and gills after prolonged exposure to waterborne 4-chloroaniline	Arch. Environ. Contam. Toxicol.	1999	37(1)	85-102	
ZDB-PUB-000201-30	10629281	van den Belt, K., Van Puymbroeck, S., and Witters, H.	Toxicity of cadmium-contaminated clay to the zebrafish Danio rerio	Arch. Environ. Contam. Toxicol.	2000	38(2)	191-196	
ZDB-PUB-010718-20	11525495	Andersson, P.L., Berg, A.H., Bjerselius, R., Norrgren, L., Olsén, H., Olsson, P.E., Örn, S., and Tysklind, M.	Bioaccumulation of selected PCBs in zebrafish, three-spined stickleback, and Arctic char after three different routes of exposure	Arch. Environ. Contam. Toxicol.	2001	40(4)	519-530	
ZDB-PUB-080801-7	18661094	Scheil, V., and Köhler, H.R.	Influence of Nickel Chloride, Chlorpyrifos, and Imidacloprid in Combination with Different Temperatures on the Embryogenesis of the Zebrafish Danio rerio	Arch. Environ. Contam. Toxicol.	2009	56(2)	238-243	
ZDB-PUB-961014-127	2353840	Braunbeck, T., Storch, V., and Bresch, H.	Species-specific reaction of liver ultrastructure in zebrafish (Brachydanio rerio) and trout (Salmo gairdneri) after prolonged exposure to 4-chloroaniline	Arch. Environ. Contam. Toxicol.	1990	19	405-418	
ZDB-PUB-030304-14	12590358	Chan, P.-K. and Cheng, S.-H.	Cadmium-induced ectopic apoptosis in zebrafish embryos	Arch. Toxicol.	2003	77(2)	69-79	
ZDB-PUB-020716-19	12107642	Schreurs, R., Lanser, P., Seinen, W., and van der Burg, B.	Estrogenic activity of UV filters determined by an in vitro reporter gene assay and an in vivo transgenic zebrafish assay	Arch. Toxicol.	2002	76(5-6)	257-261	
ZDB-PUB-060616-17	16738895	Kuiper, R.V., van den Brandhof, E.J., Leonards, P.E., van der Ven, L.T., Wester, P.W., and Vos, J.G.	Toxicity of tetrabromobisphenol A (TBBPA) in zebrafish (Danio rerio) in a partial life-cycle test	Arch. Toxicol.	2006	81(1)	1-9	
ZDB-PUB-050328-7	15787279	Benyumov, A.O., Venkatachalam, T.K., Grigoriants, O.O., Vassilev, A.O., Tibbles, H.E., Downs, S., Dumezb, D., and Uckun, F.M.	Anti-proliferative and anti-leukemic activity of DDE46 (compound WHI-07), a novel bromomethoxylated arylphosphate derivative of zidovudine, and related compounds. Studies using human acute lymphoblastic leukemia cells and the zebrafish model	Arzneimittelforschung	2005	55(2)	114-122	
ZDB-PUB-990405-13	10495848	Bilotta, J., Saszik, S., and Hardesty, H.R.	Establishing and maintaining a low-cost zebrafish breeding and behavioral research facility	Behav. Res. Meth. Instr. Comp.	1999	31(1)	178-184	
ZDB-PUB-980408-12	9551186	Chevrette, M., Joly, L., Tellis, P., and Ekker, M.	Contribution of zebrafish-mouse cell hybrids to the mapping of the zebrafish genome	Biochem. Cell Biol.	1997	75	641-649	
ZDB-PUB-980408-6	9551180	D'Amico, L.A. and Cooper, M.S.	Spatially distinct domains of cell behavior in the zebrafish organizer region	Biochem. Cell Biol.	1997	75	563-577	
ZDB-PUB-980408-9	9551183	Zerucha, T., Muller, J.-P., Chartrand, N., and Ekker, M.	Cross-interactions between two members of the Dlx family of homeobox-containing genes during zebrafish development	Biochem. Cell Biol.	1997	75	613-622	
ZDB-PUB-010815-8	11103948	Mason, I., Chambers, D., Shamim, H., Walshe, J., and Irving, C.	Regulation and function of FGF8 in patterning of midbrain and anterior hindbrain	Biochem. Cell Biol.	2000	78(5)	577-584	
ZDB-PUB-040405-1	15060624	Mishiro, E., Liu, M.Y,, Sakakibara, Y., Suiko, M., and Liu, M.C.	Zebrafish tyrosylprotein sulfotransferase: molecular cloning, expression, and functional characterization	Biochem. Cell Biol.	2004	82(2)	295-303	
ZDB-PUB-971110-11	9551177	Cheng, K.C. and Moore, J.L.	Genetic dissection of vertebrate processes in zebrafish: A comparison of uniparental and two-generation screens	Biochem. Cell Biol.	1997	75	525-533	
ZDB-PUB-980408-10	9551184	Kelly, G.M. and Reversade, B.	Characterization of a cDNA encoding a novel band 4.1-like protein in zebrafish	Biochem. Cell Biol.	1997	75	623-632	
ZDB-PUB-980408-4	9551178	Yager, T.D., Ikegami, R., Rivera-Bennetts, A.K., Zhao, C., and Brooker, D.	High-resolution imaging at the cellular and subcellular levels in flattened whole mounts of early zebrafish embryos	Biochem. Cell Biol.	1997	75	535-550	
ZDB-PUB-980408-7	9551181	Rodriguez, M. and Driever, W.	Mutations resulting in transient and localized degeneration in the developing zebrafish brain	Biochem. Cell Biol.	1997	75	579-600	
ZDB-PUB-020115-1	11800019	Harder, G. and McGowan, R.	Isolation and characterization of the muscle-specific isoform of creatine kinase from the zebrafish, Danio rerio	Biochem. Cell Biol.	2001	79(6)	779-782	
ZDB-PUB-980408-11	9551185	Collas, P. and Aleström, P.	Nuclear localization signals: a driving force for nuclear transport of plasmid DNA in zebrafish	Biochem. Cell Biol.	1997	75	633-640	
ZDB-PUB-980408-5	9551179	Kozlowski, D.J., Murakami, T., Ho, R.K., and Weinberg, E.S.	Regional cell movement and tissue patterning in the zebrafish embryo revealed by fate mapping with caged fluorescein	Biochem. Cell Biol.	1997	75	551-562	
ZDB-PUB-980408-8	9551182	Joore, J., Timmermans, A., van de Water, S., Folkers, G.E., van der Saag, P.T., and Zivkovic, D.	Domains of retinoid signalling and neurectodermal expression of zebrafish otx1 and goosecoid are mutually exclusive	Biochem. Cell Biol.	1997	75	601-612	
ZDB-PUB-991220-12	10668630	Zalik, S.E., Lewandowski, E., Kam, Z., and Geiger, B.	Cell adhesion and the actin cytoskeleton of the enveloping layer in the zebrafish embryo during epiboly	Biochem. Cell Biol.	1999	77(6)	527-542	
ZDB-PUB-001221-17	11108796	Berglund, M.M., Lundell, I., Cabrele, C., Serradeil-Le Gal, C., Beck-Sickinger, A.G., and Larhammar, D.	Binding properties of three neuropeptide Y receptor subtypes from zebrafish: comparison with mammalian Y1 receptors	Biochem. Pharmacol.	2000	60(12)	1815-1822	
ZDB-PUB-040312-1	15013852	Wentworth, J.N., Buzzeo, R., and Pollenz, R.S.	Functional characterization of aryl hydrocarbon receptor (zfAHR2) localization and degradation in zebrafish (Danio rerio)	Biochem. Pharmacol.	2004	67(7)	1363-1372	
ZDB-PUB-040609-11	15183118	Wang, W.D., Wang, Y., Wen, H.J., Buhler, D.R., and Hu, C.H.	Phenylthiourea as a weak activator of aryl hydrocarbon receptor inhibiting 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced CYP1A1 transcription in zebrafish embryo	Biochem. Pharmacol.	2004			
ZDB-PUB-070212-13	17266939	Peitsaro, N., Sundvik, M., Anichtchik, O.V., Kaslin, J., and Panula, P.	Identification of zebrafish histamine H(1), H(2) and H(3) receptors and effects of histaminergic ligands on behavior	Biochem. Pharmacol.	2007	73(8)	1205-1214	
ZDB-PUB-050225-4	15723537	Wakasugi, K., and Morishima, I.	Identification of residues in human neuroglobin crucial for Guanine nucleotide dissociation inhibitor activity	Biochemistry	2005	44(8)	2943-2948	
ZDB-PUB-061229-10	17176039	Schlegel, A., and Stainier, D.Y.	Microsomal Triglyceride Transfer Protein Is Required for Yolk Lipid Utilization and Absorption of Dietary Lipids in Zebrafish Larvae	Biochemistry	2006	45(51)	15179-15187	
ZDB-PUB-060412-19	16605243	Xu, Z., Devlin, K.I., Ford, M.G., Nix, J.C., Qin, J., and Misra, S.	Structure and Interactions of the Helical and U-Box Domains of CHIP, the C Terminus of HSP70 Interacting Protein	Biochemistry	2006	45(15)	4749-4759	
ZDB-PUB-080422-1	18416560	Watanabe, S., and Wakasugi, K.	Zebrafish Neuroglobin Is a Cell-Membrane-Penetrating Globin	Biochemistry	2008	47(19)	5266-5270	
ZDB-PUB-090814-5	19663499	Ozturk, N., Selby, C.P., Song, S.H., Ye, R., Tan, C., Kao, Y.T., Zhong, D., and Sancar, A.	Comparative photochemistry of animal type 1 and type 4 cryptochromes	Biochemistry	2009	48(36)	8585-8593	
ZDB-PUB-990414-59	10194317	Kamst, E., Bakkers, J., Quaedvlieg, N.E., Pilling, J., Kijne, J.W., Lugtenberg, B.J., and Spaink, H.P.	Chitin oligosaccharide synthesis by rhizobia and zebrafish embryos starts by glycosyl transfer to O4 of the reducing-terminal residue	Biochemistry	1999	13	4045-4052	
ZDB-PUB-991102-23	10521267	Leimer, U., Lun, K., Romig, H., Walter, J., Grunberg, J., Brand, M., and Haass, C.	Zebrafish (Danio rerio) presenilin promotes aberrant amyloid beta-peptide production and requires a critical aspartate residue for its function in amyloidogenesis	Biochemistry	1999	38(41)	13602-13609	
ZDB-PUB-031105-2	14503868	Hsiao, N.-W., Samuel, D., Liu, Y.-N., Chen, L.-C., Yang, T.-Y., Jayaraman, G., and Lyu, P.-C.	Mutagenesis study on the zebra fish SOX9 high-mobility group: comparison of sequence and non-sequence specific HMG domains	Biochemistry	2003	42(38)	11183-11193	
ZDB-PUB-100223-2	20146531	Graf, C., Stankiewicz, M., Nikolay, R., and Mayer, M.P.	Insights into the Conformational Dynamics of the E3 Ubiquitin Ligase CHIP in Complex with Chaperones and E2 Enzymes	Biochemistry	2010	\ 	\ 	
ZDB-PUB-070210-34	17253779	Moise, A.R., Isken, A., Dominguez, M., Lera, A.R., Lintig, J.V., and Palczewski, K.	Specificity of Zebrafish Retinol Saturase: Formation of All-trans-13,14-dihydroretinol and All-trans-7,8- dihydroretinol	Biochemistry	2007	46(7)	1811-1820	
ZDB-PUB-090422-12	19374445	Fortier, S., Yang, X., Wang, Y., Bennett, R.A., and Strauss, P.R.	Base Excision Repair in Early Zebrafish Development: Evidence for DNA Polymerase Switching and Standby AP endonuclease Activity	Biochemistry	2009	48(23)	5396-5404	
ZDB-PUB-000118-10	10673033	Seo, H.C., Nilsen, F., and Fjose, A.	Three structurally and functionally conserved Hlx genes in zebrafish	Biochim. Biophys. Acta Gene Struct. Exp.	1999	1489(2-3)	323-335	
ZDB-PUB-001205-13	11072074	Tanguay, R.L., Andreasen, E., Heideman, W., and Peterson, R.E.	Identification and expression of alternatively spliced aryl hydrocarbon nuclear translocator 2 (ARNT2) cDNAs from zebrafish with distinct functions	Biochim. Biophys. Acta Gene Struct. Exp.	2000	1494(1-2)	117-128	
ZDB-PUB-961014-791	8097929	Molven, A., Hordvik, I., and Njolstad, P.R.	Sequence analysis of the zebrafish hox-B5/B6 region	Biochim. Biophys. Acta Gene Struct. Exp.	1993	1173	102-106	
ZDB-PUB-980123-6	9434145	Xu, X.Z., Liu, L.H., Wong, K.C.Y., and Ge, R.W.	Cloning and characterization of two isoforms of the zebrafish thyrotroph embryonic factor (tef-alpha and tef-beta)	Biochim. Biophys. Acta Gene Struct. Exp.	1998	1395	13-20	
ZDB-PUB-980618-2	9582430	Lim, J.H., He, J.Y., Korzh, V., and Gong, Z.Y.	A new splicing variant of a type III POU gene from zebrafish encodes a POU protein with a distinct C-terminal	Biochim. Biophys. Acta Gene Struct. Exp.	1998	1397	253-256	
ZDB-PUB-981208-25	9805006	Seo, H.-C., Drivenes, O., and Fjose, A.	A zebrafish Six4 homologue with early expression in head mesoderm	Biochim. Biophys. Acta Gene Struct. Exp.	1998	1442	427-431	
ZDB-PUB-990302-49	9931422	Tanguay, R.L., Abnet, C.C., Heideman, W., and Peterson, R.E.	Cloning and characterization of the zebrafish (Danio rerio) aryl hydrocarbon receptor	Biochim. Biophys. Acta Gene Struct. Exp.	1999	1444	35-48	
ZDB-PUB-000301-17	10786634	Pierce, M., Wang, Y.M., Denovan-Wright, E.M., and Wright, J.M.	Nucleotide sequence of a cDNA clone coding for an intestinal-type fatty acid binding protein and its tissue-specific expression in zebrafish (Danio rerio)	Biochim. Biophys. Acta Gene Struct. Exp.	2000	1490(1-2)	175-183	
ZDB-PUB-961014-1292	8547308	Yarden, A., Salomon, D., and Geiger, B.	Zebrafish cyclin D1 is differentially expressed during early embryogenesis	Biochim. Biophys. Acta Gene Struct. Exp.	1995	27	257-260	
ZDB-PUB-970320-1	9003448	Gao, D.Y., Li, Z.F., Murphy, T., and Sauerbier, W.	Structure and transcription of the gene for translation elongation factor 1 subunit alpha of zebrafish (Danio rerio)	Biochim. Biophys. Acta Gene Struct. Exp.	1997	1350(1)	1-5	
ZDB-PUB-980514-7	9545518	Liang, D., Xu, X.Z., Chin, A.J., Balasubramaniyan, N.V., Teo, M.A.L., Lam, T.J., Weinberg, E.S., and Ge, R.W.	Cloning and characterization of vascular endothelial growth factor (VEGF) from zebrafish, Danio rerio	Biochim. Biophys. Acta Gene Struct. Exp.	1998	1397	14-20	
ZDB-PUB-040604-4	15170864	Huysseune, A., and Thesleff, I.	Continuous tooth replacement: the possible involvement of epithelial stem cells	Bioessays	2004	26(6)	665-671	
ZDB-PUB-060526-3	16700060	Muller, J., and Kelsh, R.N.	A golden clue to human skin colour variation	Bioessays	2006	28(6)	578-582	
ZDB-PUB-071016-9	17935197	Stewart, S., Rojas-Muñoz, A., and Belmonte, J.C.	Bioelectricity and epimorphic regeneration	Bioessays	2007	29(11)	1133-1137	
ZDB-PUB-090123-13	19154008	Albrecht-Buehler, G.	The spectra of point mutations in vertebrate genomes	Bioessays	2009	31(1)	98-106	
ZDB-PUB-990407-4	10193182	Ekker, M.	Saving zebrafish mutants	Bioessays	1999	21	94-98	
ZDB-PUB-001101-6	10984714	Roman, B.L. and Weinstein, B.M.	Building the vertebrate vasculature: research is going swimmingly	Bioessays	2000	22(10)	882-893	
ZDB-PUB-040304-10	14988924	Shawber, C.J., and Kitajewski, J.	Notch function in the vasculature: insights from zebrafish, mouse and man	Bioessays	2004	26(3)	225-234	
ZDB-PUB-090616-50	19515017	Finkielsztein, A., and Kelly, G.M.	Altering PI3K-Akt signaling in zebrafish embryos affects Pten phosphorylation and gastrulation	Biol. Cell	2009	101(11)	661-678	
ZDB-PUB-080306-7	18282142	Li, Q., Zhou, X., Guo, Y., Shang, X., Chen, H., Lu, H., Cheng, H., and Zhou, R.	Nuclear localization, DNA binding and restricted expression in neural and germ cells of zebrafish Dmrt3	Biol. Cell	2008	100(8)	453-463	
ZDB-PUB-970812-15	none	Santacruz, H. and Vriz, S.	Regional distribution of maternal mRNA Sox-19 in the zebrafish early embryo	Biol. Cell	1996	88(3)	153-155	
ZDB-PUB-000309-21	10706379	Mori, T., Sakai, M., Matsuoka, I., and Kurihara, K.	Analysis of promoter activity of 5'-upstream regions of zebrafish olfactory receptor genes	Biol. Pharm. Bull.	2000	23(2)	165-173	
ZDB-PUB-070711-23	17603177	Wu, J.Y., Lin, C.Y., Lin, T.W., Ken, C.F., and Wen, Y.D.	Curcumin affects development of zebrafish embryo	Biol. Pharm. Bull.	2007	30(7)	1336-1339	
ZDB-PUB-090706-22	19571382	Miyamura, N., Hirayama, J., Sawanobori, K., Tamaru, T., Asaoka, Y., Honda, R., Yamamoto, T., Uno, H., Takamatsu, K., and Nishina, H.	CLOCK:BMAL-Independent Circadian Oscillation of Zebrafish Cryptochrome1a Gene	Biol. Pharm. Bull.	2009	32(7)	1183-1187	
ZDB-PUB-990108-19	9500660	Iigo, M., Hara, M., Ohtani-Kaneko, R., Hirata, K., Tabata, M., and Aida, K.	Photic and circadian regulations of melatonin rhythms in fishes	Biol. Signals	1997	6	225-232	
ZDB-PUB-961014-974	none	Sander, K.	Auslosung von embyonalen fehlbildungen beim zebrabarbling	Biol. Unserer Zeit.	1983	13	87-94	
ZDB-PUB-010718-4		Kovriznych, J.A. and Urbancikova, M.	Acute toxicity of selected chemicals in adult zebrafish (Danio rerio) and its early life stages - the comparative study	Biologia	2001	56(3)	297-302	
ZDB-PUB-070820-3	17693467	Luo, X., Inouye, H., Gross, A.A., Hidalgo, M.M., Sharma, D., Lee, D., Avila, R.L., Salmona, M., and Kirschner, D.A.	Cytoplasmic Domain of Zebrafish Myelin Protein Zero: Adhesive Role Depends on {beta}-Conformation	Biophys. J.	2007	93(10)	3515-3528	
ZDB-PUB-080622-14	18556762	Supatto, W., Fraser, S.E., and Vermot, J.	An All-Optical Approach for Probing Microscopic Flows in Living Embryos	Biophys. J.	2008	95(4)	L29-L31	
ZDB-PUB-090727-8	19619483	Shi, X., Foo, Y.H., Sudhaharan, T., Chong, S.W., Korzh, V., Ahmed, S., and Wohland, T.	Determination of dissociation constants in living zebrafish embryos with single wavelength fluorescence cross-correlation spectroscopy	Biophys. J.	2009	97(2)	678-686	
ZDB-PUB-090819-16	19686669	Schaaf, M.J., Koopmans, W.J., Meckel, T., van Noort, J., Snaar-Jagalska, B.E., Schmidt, T.S., and Spaink, H.P.	Single-molecule microscopy reveals membrane microdomain organization of cells in a living vertebrate	Biophys. J.	2009	97(4)	1206-1214	
ZDB-PUB-971203-14	9251792	Barrio, L.C., Capel, J., Jarillo, J.A., Castro, C., and Revilla, A.	Species-specific voltage-gating properties of connexin-45 junctions expressed in Xenopus oocytes	Biophys. J.	1997	73(2)	757-769	
ZDB-PUB-961014-1006	none	Schreitmuller, W.	Ein Bastard von Brachydanio rerio und Danio malabarius (Jordan)	Bl. Aquar. Terr.-Kd.	1926	28	419-420	
ZDB-PUB-961014-55	none	Arnold, P. and Jvo, N.	Danio analipunctatus nov.sp. Bldr. ein neuer Danio	Bl. Aquar. Terr.-Kd.	1911	12	525-527	
ZDB-PUB-961014-750		Meinken, H.	Die Danio-arten sowie Esomus und Rasbora	Bl. Aquar. Terr.-Kd.	1926	38	6-21	
ZDB-PUB-961014-749		Meinken, H.	Kreuzungen	Bl. Aquar. Terr.-Kd.	1925	36	477-478	
ZDB-PUB-961014-751		Meinken, H.	Einiges zur Systematik der Danio-arten	Bl. Aquar. Terr.-Kd.	1949	43	211-216	
ZDB-PUB-090210-13	10423028	Jüppner, H.	Receptors for parathyroid hormone and parathyroid hormone-related peptide: exploration of their biological importance	Bone	1999	25(1)	87-90	
ZDB-PUB-020410-2	11934643	Zhang, Y., Cui, F.Z., Wang, X.M., Feng, Q.L., and Zhu, X.D.	Mechanical properties of skeletal bone in gene-mutated stopsel(dtl28d) and wild-type zebrafish (Danio rerio) measured by atomic force microscopy-based nanoindentation	Bone	2002	30(4)	541-546	
ZDB-PUB-090518-22	19442608	Chen, Y.H., Lin, Y.T., and Lee, G.H.	Novel and unexpected functions of zebrafish CCAAT box binding transcription factor (NF-Y) B subunit during cartilages development	Bone	2009	44(5)	777-784	
ZDB-PUB-090210-12	11934643	Zhang, Y., Cui, F.Z., Wang, X.M., Feng, Q.L., and Zhu, X.D.	Mechanical properties of skeletal bone in gene-mutated stöpsel(dtl28d) and wild-type zebrafish (Danio rerio) measured by atomic force microscopy-based nanoindentation	Bone	2002	30(4)	541-546	
ZDB-PUB-020820-9	12173226	Nash, H.A.	In vivo genetics of anaesthetic action	Br. J. Anaesth.	2002	89(1)	143-155	
ZDB-PUB-010514-2	11326138	Caminos, E., Velasco, A., Jarrin, M., Lillo, C., Jimeno, D., Aijon, J., and Lara, J.M.	A comparative study of protein kinase C-like immunoreactive cells in the retina	Brain Behav. Evol.	2000	56(6)	330-339	
ZDB-PUB-030117-7	12457080	Borla, M.A., Palecek, B., Budick, S., and O'Malley, D.M.	Prey capture by larval zebrafish: evidence for fine axial motor control	Brain Behav. Evol.	2002	60(4)	207-229	
ZDB-PUB-961014-934	974722	Reperant, J. and Lemire, M.	Retinal projections in cyprinid fishes. A degeneration and radioautography study	Brain Behav. Evol.	1976	13(1)	34-57	
ZDB-PUB-041227-1	10838480	Hansen, A., and Finger, T.E.	Phyletic distribution of crypt-type olfactory receptor neurons in fishes	Brain Behav. Evol.	2000	55(2)	100-110	
ZDB-PUB-050810-14	16088102	McElligott, M.B., and O'Malley, D.M.	Prey Tracking by Larval Zebrafish: Axial Kinematics and Visual Control	Brain Behav. Evol.	2005	66(3)	177-196	
ZDB-PUB-060306-2	16493194	Canfield, J.G.	Functional Evidence for Visuospatial Coding in the Mauthner Neuron	Brain Behav. Evol.	2006	67(4)	188-202	
ZDB-PUB-060831-1	16912471	Airaksinen, M.S., Holm, L., and Hatinen, T.	Evolution of the GDNF family ligands and receptors	Brain Behav. Evol.	2006	68(3)	181-190	
ZDB-PUB-010718-46	11165794	Roberts, A.	Early functional organization of spinal neurons in developing lower vertebrates	Brain Res. Bull.	2000	53(5)	585-593	
ZDB-PUB-011115-1	11595353	Glover, J.C.	Correlated patterns of neuron differentiation and Hox gene expression in the hindbrain: A comparative analysis	Brain Res. Bull.	2001	55(6)	683-693	
ZDB-PUB-020403-7	11922990	Wullimann, M.F. and Rink, E.	The teleostean forebrain: a comparative and developmental view based on early proliferation, Pax6 activity and catecholaminergic organization	Brain Res. Bull.	2002	57(3-4)	363-370	
ZDB-PUB-080327-6	18355638	Jeong, J.Y., Kwon, H.B., Ahn, J.C., Kang, D., Kwon, S.H., Park, J.A., and Kim, K.W.	Functional and developmental analysis of the blood-brain barrier in zebrafish	Brain Res. Bull.	2008	75(5)	619-628	
ZDB-PUB-020403-10	11922994	Rink, E. and Wullimann, M.F.	Connections of the ventral telencephalon and tyrosine hydroxylase distribution in the zebrafish brain (Danio rerio) lead to identification of an ascending dopaminergic system in a teleost	Brain Res. Bull.	2002	57(3-4)	385-387	
ZDB-PUB-020403-8	11922991	Hauptmann, G., Söll, I., and Gerster, T.	The early embryonic zebrafish forebrain is subdivided into molecularly distinct transverse and longitudinal domains	Brain Res. Bull.	2002	57(3-4)	371-375	
ZDB-PUB-050913-1	16144624	Arenzana, F.J., Clemente, D., Sanchez-Gonzalez, R., Porteros, A., Aijon, J., and  Arevalo, R.	Development of the cholinergic system in the brain and retina of the zebrafish	Brain Res. Bull.	2005	66(4-6)	421-425	
ZDB-PUB-090505-20	19410636	Jie, Z., Li, T., Jia-Yun, H., Qiu, J., Ping-Yao, Z., and Houyan, S.	Trans-2-Phenylcyclopropylamine induces nerve cells apoptosis in zebrafish mediated by depression of LSD1 activity	Brain Res. Bull.	2009	80(1-2)	79-84	
ZDB-PUB-010227-2	11165784	Beattie, C.E.	Control of motor axon guidance in the zebrafish embryo	Brain Res. Bull.	2000	53(5)	489-500	
ZDB-PUB-020403-9	11922992	Mueller, T. and Wullimann, M.F.	Expression domains of neuroD (nrd) in the early postembryonic zebrafish brain	Brain Res. Bull.	2002	57(3-4)	377-379	
ZDB-PUB-050913-2	16144647	Clemente, D., Arenzana, F.J., Sanchez-Gonzalez, R., Porteros, A., Aijon, J., and Arevalo, R.	Comparative analysis of the distribution of choline acetyltransferase in the central nervous system of cyprinids	Brain Res. Bull.	2005	66(4-6)	546-549	
ZDB-PUB-990407-5	10210171	Tongiorgi, E.	Tenascin-C expression in the trunk of wild-type, cyclops and floating head zebrafish embryos	Brain Res. Bull.	1999	48	79-88	
ZDB-PUB-091215-12	19941938	Rico, E.P., de Oliveira, D.L., Rosemberg, D.B., Mussulini, B.H., Bonan, C.D., Dias, R.D., Wofchuk, S., Souza, D.O., and Bogo, M.R.	Expression and functional analysis of Na(+)-dependent glutamate transporters from zebrafish brain	Brain Res. Bull.	2010	81(4-5)	517-523	
ZDB-PUB-051012-13	16209898	McKinley, E.T., Baranowski, T.C., Blavo, D.O., Cato, C., Doan, T.N., and Rubinstein, A.L.	Neuroprotection of MPTP-induced toxicity in zebrafish dopaminergic neurons	Brain Res. Mol. Brain Res.	2005	141(2)	128-137	
ZDB-PUB-030408-8	12670711	Moutsaki, P., Whitmore, D., Bellingham, J., Sakamoto, K., David-Gray, Z.K., and Foster, R.G.	Teleost multiple tissue (tmt) opsin: a candidate photopigment regulating the peripheral clocks of zebrafish?	Brain Res. Mol. Brain Res.	2003	112(1-2)	135-145	
ZDB-PUB-001101-10	11038260	Tohyama, Y., Ichimiya, T., Kasama-Yoshida, H., Cao, Y., Hasegawa, M., Kojima, H., Tamai, Y., and Kurihara, T.	Phylogenetic relation of lungfish indicated by the amino acid sequence of myelin DM20	Brain Res. Mol. Brain Res.	2000	80(2)	256-259	
ZDB-PUB-001221-10	11113526	Barrallo, A., González Sarmiento, R., Alvar, F., and Rodriguez, R.E.	ZFOR2, a new opioid receptor-like gene from the teleost zebrafish (Danio rerio)	Brain Res. Mol. Brain Res.	2000	84(1-2)	1-6	
ZDB-PUB-030115-1	12487121	Bellingham, J., Whitmore, D., Philp, A.R., Wells, D.J., and Foster, R.G.	Zebrafish melanopsin: isolation, tissue localisation and phylogenetic position	Brain Res. Mol. Brain Res.	2002	107(2)	128-136	
ZDB-PUB-051214-6	14667571	Gonzalez-Nuñez, V., Gonzalez-Sarmiento, R., and Rodriguez, R.E.	Identification of two proopiomelanocortin genes in zebrafish (Danio rerio)	Brain Res. Mol. Brain Res.	2003	120(1)	1-8	
ZDB-PUB-961014-494	none	Johnson, R.A., Hart, N.H., and Powell, D.	Studies on the morphology of blood cells in the fresh water teleost, Brachydanio rerio	Bull N.Y. Acad. Sci.	1973	18	20-21	
ZDB-PUB-961014-1288	none	Yamane, S.	Histology and fine structure of the ultimobranchial gland in the zebrafish, Brachydanio rerio	Bull. Fac. Fish. Hokkaido Univ.	1978	29	213-222	
ZDB-PUB-961014-1105	none	Takahashi, H.	Juvenile hermaphroditism in the zebrafish, Brachydanio rerio	Bull. Fac. Fish. Hokkaido Univ.	1977	28	57-65	
ZDB-PUB-961014-1286	none	Yamamoto, K. and Oota, I.	An electron microscopic study of the formation of the yolk globule in the oocyte of zebrafish, Brachydanio rerio	Bull. Fac. Fish. Hokkaido Univ.	1967	17	165-174	
ZDB-PUB-011217-17	none	Deschet, K., Thermes, V., and Joly, J.S.	The transgenesis among the fishes	Bull. Soc. Zool. France	2001	126(3)	255-268	
ZDB-PUB-021018-9	none	Aoki, Y., Sato, H., and Amanuma, K.	Detection of environmental mutagens using transgenic animals	Bunseki Kagaku	2002	51(6)	373-380	
ZDB-PUB-061020-35	17033725	Simoes, B., Conceicao, N., Viegas, C.S., Pinto, J.P., Gavaia, P.J., Hurst, L.D., Kelsh, R.N., and Cancela, M.L.	Identification of a Promoter Element within the Zebrafish colXalpha1 Gene Responsive to Runx2 Isoforms Osf2/Cbfa1 and til-1 but not to pebp2alphaA2.	Calcif. Tissue Int.	2006	79(4)	230-244	
ZDB-PUB-050113-8	14668966	Simes, D.C., Williamson, M.K., Schaff, B.J., Gavaia, P.J., Ingleton, P.M., Price, P.A., and Cancela, M.L.	Characterization of osteocalcin (BGP) and matrix Gla protein (MGP) fish specific antibodies: validation for immunodetection studies in lower vertebrates	Calcif. Tissue Int.	2004	74(2)	170-180	
ZDB-PUB-961014-659		Laale, H.W.	Fish embryo culture: observations on axial cord differentiation in presomitic isolates of the zebrafish Brachydanio rerio	Can. J. Biol.	1982	60	1710-1721	
ZDB-PUB-061221-13	1168532	Laale. H., and Law, P.Y.	An immunological study of the embryonic stages of the zebra fish, Brachydanio Reio. I. Prehatching-stage antigenic patterns	Can. J. Zool.	1975	53(3)	246-252	
ZDB-PUB-961014-1047	none	Smith, R.J.F.	Reduced alarm substance cell counts in male and androgen-treated zebra danios (Brachydanio rerio)	Can. J. Zool.	1986	64	551-553	
ZDB-PUB-961014-631	none	Kramer, D.L., Manley, D., and Bourgeouis, R.	The effect of respiratory mode and oxygen concentration on the risk of aerial predation in fishes	Can. J. Zool.	1983	61	653-665	
ZDB-PUB-961014-656	837288	Laale, H.W.	Culture and preliminary observations of follicular isolates from adult zebrafish, Brachydanio rerio	Can. J. Zool.	1977	55(2)	304-309	
ZDB-PUB-961014-661		Laale, H.W.	Fish embryo culture cardiac mono layers and contractile activity in embryo explants from the zebrafish Brachydanio-rerio	Can. J. Zool.	1984	62	878-885	
ZDB-PUB-961014-664		Laale, H.W. and Law, Y.H.	An immunological study of the embryonic stages of the zebrafish, Brachydanio rerio. I. Prehatching stage antigenic patterns	Can. J. Zool.	1975	53	246-252	
ZDB-PUB-961014-680		Law, Y.H. and Laale, H.W.	An immunological study of the embryonic stages of the zebrafish, Brachydanio rerio. II. Hatching stage antigenic pattern	Can. J. Zool.	1975	53	253-261	
ZDB-PUB-961014-828	4832968	Niimi, A.J. and LaHam, Q.N.	Influence of breeding time interval on egg number, mortality, and hatching of the zebra fish, Brachydanio rerio	Can. J. Zool.	1974	52	515-517	
ZDB-PUB-961014-830	1260570	Niimi, A.J. and LaHam, Q.N.	Relative toxicity of organic and inorganic compounds of selenium to newly hatched zebrafish (Brachydanio rerio)	Can. J. Zool.	1976	54	501-509	
ZDB-PUB-061221-11	4832968	Niimi, A.J., and LaHam, Q.N.	Influence of breeding time interval on egg number, mortality, and hatching of the zebra fish Brachydanio verio	Can. J. Zool.	1974	52(4)	515-517	
ZDB-PUB-961014-40	5624118	Anderson, P.D. and Battle, H.I.	Effects of chloramphenicol on the development of the zebrafish, Brachydanio rerio	Can. J. Zool.	1967	45	191-204	
ZDB-PUB-961014-413		Harvey, B. and Chamberlain, J.B.	Water permeability in the developing embryo of zebrafish, Brachydanio rerio	Can. J. Zool.	1982	60	268-270	
ZDB-PUB-961014-657	none	Laale, H.W.	In vitro primary spreading and dissociation of zebrafish, Brachydanio rerio, blastoderm-derived embryonic epidermis	Can. J. Zool.	1981	59	800-811	
ZDB-PUB-961014-662		Laale, H.W.	Naturally occurring diblastodermic eggs in the zebrafish, Brachydanio rerio	Can. J. Zool.	1984	62	386-390	
ZDB-PUB-061221-12	1125868	Law, P.Y., and Laale, H.	An immunological study of the embryonic stages of the zebra fish, Brachydanio rerio. II. Hatching-stage antigenic patterns	Can. J. Zool.	1975	53(3)	253-261	
ZDB-PUB-961014-1150		van den Hurk, R. and Lambert, J.G.D.	Ovarian steroid glucuronides function as sex pheromones for male zebrafish, Brachydanio rerio	Can. J. Zool.	1983	61	2381-2387	
ZDB-PUB-961014-215	none	Dentry, W. and Lindsey, C.C.	Vertebral variation in zebrafish (Brachydanio rerio) related to the prefertilization temperature history of their parents	Can. J. Zool.	1978	56	280-283	
ZDB-PUB-961014-414		Harvey, B., Kelley, R.N., and Ashwood-Smith, M.J.	Cryopreservation of zebrafish (Brachydanio rerio) spermatozoa using methanol	Can. J. Zool.	1982	60	1876-1870	
ZDB-PUB-961014-471		Hugie, D.M. and Smith, R.J.F.	Epidermal club cells are not linked with an alarm response in reedfish Erpetoichtys-calabaricus	Can. J. Zool.	1987	65	2057-2061	
ZDB-PUB-961014-658	none	Laale, H.W.	In vitro secondary spreading from dissociating blastoderm-derived embryonic tissues of the zebrafish	Can. J. Zool.	1981	59	812-822	
ZDB-PUB-961014-660	none	Laale, H.W..	Fish embryo culture: rhommbencephalic neuritic outgrowth in explanted axial cords from the zebrafish, Brachydanio rerio	Can. J. Zool.	1982	60	3215-3219	
ZDB-PUB-961014-663		Laale, H.W.	Kupffer's Vesicle in Brachydanio rerio: multivesicular origin and proposed function in vitro	Can. J. Zool.	1985	63	2408-2415	
ZDB-PUB-980825-2	none	Basquill, S.P. and Grant, J.W.A.	An increase in habitat complexity reduces aggression and monopolization of food by zebra fish (Danio rerio)	Can. J. Zool.	1998	76	770-772	
ZDB-PUB-070427-8	17426448	Zheng, L., Ling, P., Wang, Z., Niu, R., Hu, C., Zhang, T., and Lin, X.	A Novel Polypeptide from Shark Cartilage with Potent Anti-Angiogenic Activity	Cancer Biol. Ther.	2007	6(5)	775-780	
ZDB-PUB-040514-7	15136765	Scata, K.A., and El-Deiry, W.S.	Zebrafish: Swimming Towards a Role for Fanconi Genes in DNA Repair	Cancer Biol. Ther.	2004	3(6)	501-502	
ZDB-PUB-070427-7	17426443	Duffy, K.T., and Wickstrom, E.	Zebrafish tp53 Knockdown Extends the Survival of Irradiated Zebrafish Embryos More Effectively than the p53 Inhibitor Pifithrin-alpha	Cancer Biol. Ther.	2007	6(5)	675-678	
ZDB-PUB-041021-5	15492244	Yang, H.W., Kutok, J.L., Lee, N.H., Piao, H.Y., Fletcher, C.D., Kanki, J.P., and Look, A.T.	Targeted Expression of Human MYCN Selectively Causes Pancreatic Neuroendocrine Tumors in Transgenic Zebrafish	Cancer Res.	2004	64(20)	7256-7262	
ZDB-PUB-060323-21	16540662	Mizgireuv, I.V., and Revskoy, S.Y.	Transplantable Tumor Lines Generated in Clonal Zebrafish	Cancer Res.	2006	66(6)	3120-3125	
ZDB-PUB-071210-30	18056466	Tran, T.C., Sneed, B., Haider, J., Blavo, D., White, A., Aiyejorun, T., Baranowski, T.C., Rubinstein, A.L., Doan, T.N., Dingledine, R., and Sandberg, E.M.	Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafish	Cancer Res.	2007	67(23)	11386-11392	
ZDB-PUB-090617-2	19509231	Zhang, J., Sattler, M., Tonon, G., Grabher, C., Lababidi, S., Zimmerhackl, A., Raab, M.S., Vallet, S., Zhou, Y., Cartron, M.A., Hideshima, T., Tai, Y.T., Chauhan, D., Anderson, K.C., and Podar, K.	Targeting angiogenesis via a c-Myc/hypoxia-inducible factor-1alpha-dependent pathway in multiple myeloma	Cancer Res.	2009	69(12)	5082-5090	
ZDB-PUB-080506-5	18451167	Geiger, G.A., Fu, W., and Kao, G.D.	Temozolomide-mediated radiosensitization of human glioma cells in a zebrafish embryonic system	Cancer Res.	2008	68(9)	3396-3404	
ZDB-PUB-090511-9	19417137	Embree, L.J., Azuma, M., and Hickstein, D.D.	Ewing Sarcoma Fusion Protein EWSR1/FLI1 Interacts with EWSR1 Leading to Mitotic Defects in Zebrafish Embryos and Human Cell Lines	Cancer Res.	2009	69(10)	4363-4371	
ZDB-PUB-961014-443	13547045	Hisaoka, K.K.	The effects of 2-acetylaminofluorene on the embryonic development of the zebrafish. I. Morphological studies	Cancer Res.	1958	18(5)	527-535	
ZDB-PUB-961014-81	14925939	Battle, H.I. and Hisaoka, K.K.	Effects of ethyl carbamate (urethan) on the early development of the teleost, Brachydanio rerio	Cancer Res.	1952	12(5)	334-340	
ZDB-PUB-060807-9	16885356	Shelton, D.N., Sandoval, I.T., Eisinger, A., Chidester, S., Ratnayake, A., Ireland , C.M., and Jones, D.A.	Up-regulation of CYP26A1 in Adenomatous Polyposis Coli-Deficient Vertebrates via a WNT-Dependent Mechanism: Implications for Intestinal Cell Differentiation and Colon Tumor Development	Cancer Res.	2006	66(15)	7571-7577	
ZDB-PUB-060825-4	16912196	Geiger, G.A., Parker, S.E., Beothy, A.P., Tucker, J.A., Mullins, M.C., and Kao, G.D.	Zebrafish as a "biosensor"? Effects of ionizing radiation and amifostine on embryonic viability and development	Cancer Res.	2006	66(16)	8172-8181	
ZDB-PUB-070409-21	17409396	Nicoli, S., Ribatti, D., Cotelli, F., and Presta, M.	Mammalian tumor xenografts induce neovascularization in zebrafish embryos	Cancer Res.	2007	67(7)	2927-2931	
ZDB-PUB-070920-24	17875720	Lally, B.E., Geiger, G.A., Kridel, S., Arcury-Quandt, A.E., Robbins, M.E., Kock, N.D., Wheeler, K., Peddi, P., Georgakilas, A., Kao, G.D., and Koumenis, C.	Identification and Biological Evaluation of a Novel and Potent Small Molecule Radiation Sensitizer via an Unbiased Screen of a Chemical Library.	Cancer Res.	2007	67(18)	8791-8799	
ZDB-PUB-080707-5	18593904	Feitsma, H., Kuiper, R.V., Korving, J., Nijman, I.J., and Cuppen, E.	Zebrafish with mutations in mismatch repair genes develop neurofibromas and other tumors	Cancer Res.	2008	68(13)	5059-5066	
ZDB-PUB-961014-444	13561258	Hisaoka, K.K.	The effects of 2-acetylaminofluorene on the embryonic development of the zebrafish. II. Histochemical studies	Cancer Res.	1958	18(6)	664-667	
ZDB-PUB-020624-6	12064604	Chatterjee, B., Li, Y.X., Zdanowicz, M., Sonntag, J.M., Chin, A.J., Kozlowski, D.J., Valdimarsson, G., Kirby, M.L., and Lo, C.W.	Analysis of Cx43alpha1 promoter function in the developing zebrafish embryo	Cell Adhes. Commun.	2001	8(4-6)	289-292	
ZDB-PUB-961101-36	7994634	Ghosh, C., Zhou, Y.L., and Collodi, P.	Derivation and characterization of a zebrafish liver cell line	Cell Biol. Toxicol.	1994	10	167-176	
ZDB-PUB-961014-179	1591622	Collodi, P., Kamei, Y., Ernst, T., Miranda, C., Buhler, D.R., and Barnes, D.W.	Culture of cells from zebrafish Brachydanio-rerio embryo and adult tissues	Cell Biol. Toxicol.	1992	8	43-61	
ZDB-PUB-080422-7	18418056	Davidson, W., Ren, Q., Kari, G., Kashi, O., Dicker, A.P., and Rodeck, U.	Inhibition of p73 function by Pifithrin- as revealed by studies in zebrafish embryos	Cell Cycle	2008	7(9)	1224-1230	
ZDB-PUB-100105-5	20023383	Flynt, A.S., and Patton, J.G.	Crosstalk between planar cell polarity signaling and miR-8 control of NHERF1-mediated actin reorganization	Cell Cycle	2010	9(2)	235-237	
ZDB-PUB-100119-25	20081368	Lane, D.P., Cheok, C.F., Brown, C., Madhumalar, A., Ghadessy, F.J., and Verma, C.	Mdm2 and p53 are highly conserved from placozoans to man	Cell Cycle	2010	\ 	\ 	
ZDB-PUB-100223-37	20160485	Lane, D.P., Cheok, C.F., Brown, C.J., Madhumalar, A., Ghadessy, F.J., and Verma, C.	The Mdm2 and p53 genes are conserved in the Arachnids	Cell Cycle	2010	9(4)	748-754	
ZDB-PUB-041008-6	15467466	Poss, K.D.	A Zebrafish Model of Germ Cell Aneuploidy	Cell Cycle	2004	3(10)	1225-1226	
ZDB-PUB-060412-7	16582610	Lam, S.H., and Gong, Z.	Modeling liver cancer using zebrafish: a comparative oncogenomics approach	Cell Cycle	2006	5(6)	573-577	
ZDB-PUB-090807-13	19652538	Hirayama, J., Miyamura, N., Uchida, Y., Asaoka, Y., Honda, R., Sawanobori, K., Todo, T., Yamamoto, T., Sassone-Corsi, P., and Nishina, H.	Common light signaling pathways controlling DNA repair and circadian clock entrainment in zebrafish	Cell Cycle	2009	8(17)	2794-2801	
ZDB-PUB-091101-16	19855180	Zheng, P.P., Severijnen, L.A., Willemsen, R., and Kros, J.M.	Circulation status of subintestinal vessels is a sensitive parameter for monitoring suboptimal systemic circulation in experimental zebrafish embryos	Cell Cycle	2009	8(22)	3782-3783	
ZDB-PUB-100223-38	20160500	Rouhi, P., Lee, S.L., Cao, Z., Hedlund, E.M., Jensen, L.D., and Cao, Y.	Pathological angiogenesis facilitates tumor cell dissemination and metastasis	Cell Cycle	2010	\ 	\ 	
ZDB-PUB-050602-2	15908775	Bakkers, J., Camacho-Carvajal, M., Nowak, M., Kramer, C., Danger, B., and Hammerschmidt, M.	Destabilization of DeltaNp63alpha by Nedd4-Mediated Ubiquitination and Ubc9-Mediated Sumoylation, and Its Implications on Dorsoventral Patterning of the Zebrafish Embryo	Cell Cycle	2005	4(6)	790-800	
ZDB-PUB-070523-1	16721065	Ryu, S., and Driever, W.	Minichromosome maintenance proteins as markers for proliferation zones during embryogenesis	Cell Cycle	2006	5(11)	1140-1142	
ZDB-PUB-071227-18	18156805	Fischer, S., Prykhozhij, S., Rau, M.J., and Neumann, C.J.	Mutation of Zebrafish caf-1b Results in S Phase Arrest, Defective Differentiation and p53-Mediated Apoptosis During Organogenesis	Cell Cycle	2007	6(23)	2962-2969	
ZDB-PUB-971114-4	none	Schmarda, A., Nagl, U.O., Gschwentner, M., Fürst, J., Hofer, S., Deetjen, P., and Paulmichl, M.	Cloning of the swelling-dependent chloride channel lCln homologue from zebrafish	Cell Physiol. Biochem.	1997	7(5)	298-302	
ZDB-PUB-010522-1	11361087	Korsching, S.I.	Odor maps in the brain: spatial aspects of odor representation in sensory surface and olfactory bulb	Cell. Mol. Life Sci.	2001	58(4)	520-530	
ZDB-PUB-060816-33	16909204	Blacque, O.E., and Leroux, M.R.	Bardet-Biedl syndrome: an emerging pathomechanism of intracellular transport	Cell. Mol. Life Sci.	2006	63(18)	2145-2161	
ZDB-PUB-070504-17	17458498	Makinen, T., Norrmen, C., and Petrova, T.V.	Molecular mechanisms of lymphatic vascular development	Cell. Mol. Life Sci.	2007	64(15)	1915-1929	
ZDB-PUB-040429-1	15112050	Fransson, L.A., Belting, M., Cheng, F., Jonsson, M., Mani, K., and Sandgren, S.	Novel aspects of glypican glycobiology	Cell. Mol. Life Sci.	2004	61(9)	1016-1024	
ZDB-PUB-031031-7	14583256	MacRae, C.A. and Peterson, R.T.	Zebrafish-based small molecule discovery	Chemistry & Biology	2003	10(10)	901-908	
ZDB-PUB-060921-27	16984890	Zhang, Y., Yeh, J.R., Mara, A., Ju, R., Hines, J.F., Cirone, P., Griesbach, H.L., Schneider, I., Slusarski, D.C., Holley, S.A., and Crews, C.M.	A chemical and genetic approach to the mode of action of fumagillin	Chemistry & Biology	2006	13(9)	1001-1009	
ZDB-PUB-090429-4	19389629	Kalén, M., Wallgard, E., Asker, N., Nasevicius, A., Athley, E., Billgren, E., Larson, J.D., Wadman, S.A., Norseng, E., Clark, K.J., He, L., Karlsson-Lindahl, L., Häger, A.K., Weber, H., Augustin, H., Samuelsson, T., Kemmet, C.K., Utesch, C.M., Essner, J.J., Hackett, P.B., and Hellström, M.	Combination of reverse and chemical genetic screens reveals angiogenesis inhibitors and targets	Chemistry & Biology	2009	16(4)	432-441	
ZDB-PUB-081028-9	18940664	Eelen, G., Valle, N., Sato, Y., Rochel, N., Verlinden, L., De Clercq, P., Moras, D., Bouillon, R., Muñoz, A., and Verstuyf, A.	Superagonistic fluorinated vitamin D(3) analogs stabilize helix 12 of the vitamin D receptor	Chemistry & Biology	2008	15(10)	1029-1034	
ZDB-PUB-060922-1	16984880	Peterson, R.T.	A noncanonical path to mechanism of action	Chemistry & Biology	2006	13(9)	924-926	
ZDB-PUB-050920-11	16168740	Mukhi, S., Pan, X., Cobb, G.P., and Patino, R.	Toxicity of hexahydro-1,3,5-trinitro-1,3,5-triazine to larval zebrafish (Danio rerio)	Chemosphere.	2005	61(2)	178-185	
ZDB-PUB-061108-17	17084436	Liu, H., Yu, H., Giesy, J.P., Sun, Y., and Wang, X.	Toxicity of HC Orange No. 1 to Daphnia magna, Zebrafish (Brachydanio rerio) embryos, and goldfish (Carassius auratus)	Chemosphere.	2007	66(11)	2159-2165	
ZDB-PUB-070409-10	17397904	Correa-Reyes, G., Viana, M.T., Marquez-Rocha, F.J., Licea, A.F., Ponce, E., and Vazquez-Duhalt, R.	Nonylphenol algal bioaccumulation and its effect through the trophic chain	Chemosphere.	2007	68(4)	662-670	
ZDB-PUB-080722-3	18619640	Wahl, M., Lahni, B., Guenther, R., Kuch, B., Yang, L., Straehle, U., Strack, S., and Weiss, C.	A technical mixture of 2,2',4,4'-tetrabromo diphenyl ether (BDE47) and brominated furans triggers aryl hydrocarbon receptor (AhR) mediated gene expression and toxicity	Chemosphere.	2008	73(2)	209-215	
ZDB-PUB-081105-7	18976794	De Wit, M., Keil, D., Remmerie, N., Ven, K.V., Brandhof, E.J., Knapen, D., Witters, E., and Coen, W.D.	Molecular targets of TBBPA in zebrafish analysed through integration of genomic and proteomic approaches	Chemosphere.	2008	74(1)	96-105	
ZDB-PUB-090921-11	19751945	Schreiber, R., Altenburger, R., Paschke, A., Schüürmann, G., and Küster, E.	A novel in vitro system for the determination of bioconcentration factors and the internal dose in zebrafish (Danio rerio) eggs	Chemosphere.	2009	77(7)	928-933	
ZDB-PUB-100105-22	20036412	Jin, Y., Zhang, X., Shu, L., Chen, L., Sun, L., Qian, H., Liu, W., and Fu, Z.	Oxidative stress response and gene expression with atrazine exposure in adult female zebrafish (Danio rerio)	Chemosphere.	2010	78(7)	846-852	
ZDB-PUB-100223-56	20172587	Hillwalker, W.E., Allan, S.E., Tanguay, R.L., and Anderson, K.A.	Exploiting lipid-free tubing passive samplers and embryonic zebrafish to link site specific contaminant mixtures to biological responses	Chemosphere.	2010	79(1)	1-7	
ZDB-PUB-060327-3	16554083	Wright, A.D., Papendorf, O., Konig, G.M., and Oberemm, A.	Effects of cyanobacterium Fischerella ambigua isolates and cell free culture media on zebrafish (Danio rerio) embryo development	Chemosphere.	2006	65(4)	604-608	
ZDB-PUB-060616-24	16750242	van der Ven, K., Keil, D., Moens, L.N., Hummelen, P.V., van Remortel, P., Maras, M., De Coen, W.	Effects of the antidepressant mianserin in zebrafish: Molecular markers of endocrine disruption	Chemosphere.	2006	65(10)	1836-1845	
ZDB-PUB-060731-7	16860841	Liu, F.J., Cobb, G.P., Anderson, T.A., Cheng, Q.Q., and Theodorakis, C.W.	Uptake, accumulation and depuration of sodium perchlorate and sodium arsenate in zebrafish (Danio rerio)	Chemosphere.	2006	65(10)	1679-1689	
ZDB-PUB-070303-1	17292441	Kuster, E., and Altenburger, R.	Suborganismic and organismic effects of aldicarb and its metabolite aldicarb-sulfoxide to the zebrafish embryo (Danio rerio)	Chemosphere.	2007	68(4)	751-760	
ZDB-PUB-080610-4	18514256	Nyholm, J.R., Norman, A., Norrgren, L., Haglund, P., and Andersson, P.L.	Maternal transfer of brominated flame retardants in zebrafish (Danio rerio)	Chemosphere.	2008	73(2)	203-208	
ZDB-PUB-081022-1	18840388	Matson, C.W., Timme-Laragy, A.R., Di Giulio, R.T.	Fluoranthene, but not benzo[a]pyrene, interacts with hypoxia resulting in pericardial effusion and lordosis in developing zebrafish	Chemosphere.	2008	74(1)	149-154	
ZDB-PUB-090807-5	19647285	Dong, X., Zhu, L., Wang, J., Wang, J., Xie, H., Hou, X., and Jia, W.	Effects of atrazine on cytochrome P450 enzymes of zebrafish (Danio rerio)	Chemosphere.	2009	77(3)	404-412	
ZDB-PUB-990107-14	9734323	Bowmer, C.T., Hooftman, R.N., Hanstveit, A.O., Venderbosch, P.W., and van der Hoeven, N.	The ecotoxicity and the biodegradability of lactic acid, alkyl lactate esters and lactate salts	Chemosphere.	1998	37	1317-1333	
ZDB-PUB-040706-9	15234162	Hallare, A.V., Köhler, H.R., and Triebskorn, R.	Developmental toxicity and stress protein responses in zebrafish embryos after exposure to diclofenac and its solvent, DMSO	Chemosphere.	2004	56(7)	659-666	
ZDB-PUB-070907-28	17764721	Pomati, F., Cotsapas, C.J., Castiglioni, S., Zuccato, E., and Calamari, D.	Gene expression profiles in zebrafish (Danio rerio) liver cells exposed to a mixture of pharmaceuticals at environmentally relevant concentrations	Chemosphere.	2007	70(1)	65-73	
ZDB-PUB-080102-12	18164748	Liu, F., Gentles, A., and Theodorakis, C.W.	Arsenate and perchlorate toxicity, growth effects, and thyroid histopathology in hypothyroid zebrafish Danio rerio	Chemosphere.	2008	71(7)	1369-1376	
ZDB-PUB-080515-10	18471859	Mukhi, S., and Patiño, R.	Effects of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in zebrafish: General and reproductive toxicity	Chemosphere.	2008	72(5)	726-732	
ZDB-PUB-080622-13	18556046	Kuiper, R.V., Dick Vethaak, A., Cantón, R.O., Anselmo, H., Dubbeldam, M., van den Brandhof, E.J., Leonards, P.E., Wester, P.W., and den Berg van, M.	Toxicity of analytically cleaned pentabromodiphenylether after prolonged exposure in estuarine European flounder (Platichthys flesus), and partial life-cycle exposure in fresh water zebrafish (Danio rerio)	Chemosphere.	2008	73(2)	195-202	
ZDB-PUB-081114-7	18996565	Du, Y., Shi, X., Liu, C., Yu, K., and Zhou, B.	Chronic effects of water-borne PFOS exposure on growth, survival and hepatotoxicity in zebrafish: A partial life-cycle test	Chemosphere.	2009	74(5)	723-729	
ZDB-PUB-090105-12	19095286	Jin, Y., Chen, R., Sun, L., Wang, W., Zhou, L., Liu, W., and Fu, Z.	Enantioselective induction of estrogen-responsive gene expression by permethrin enantiomers in embryo-larval zebrafish	Chemosphere.	2009	74(9)	1238-1244	
ZDB-PUB-090828-19	19703701	Shi, X., Liu, C., Wu, G., and Zhou, B.	Waterborne exposure to PFOS causes disruption of the hypothalamus-pituitary-thyroid axis in zebrafish larvae	Chemosphere.	2009	77(7)	1010-1018	
ZDB-PUB-091005-10	19796790	Osterauer, R., Haus, N., Sures, B., and Köhler, H.R.	Uptake of platinum by zebrafish (Danio rerio) and ramshorn snail (Marisa cornuarietis) and resulting effects on early embryogenesis	Chemosphere.	2009	77(7)	975-982	
ZDB-PUB-100105-39	20044124	Sun, L., Wen, L., Shao, X., Qian, H., Jin, Y., Liu, W., and Fu, Z.	Screening of chemicals with anti-estrogenic activity using in vitro and in vivo vitellogenin induction responses in zebrafish (Danio rerio)	Chemosphere.	2010	78(7)	793-799	
ZDB-PUB-961104-8	8061234	Li, S., Mao, Z., Han, W., Sun, Z., Yan, W., Chen, H., and Yan, S.	In vitro oocyte maturation in the zebrafish, Brachydanio rerio, and the fertilization and development of the mature egg	Chin. J. Biotechnol.	1993	9(4)	247-255	
ZDB-PUB-961104-3	8582168	Stelzner, F.	Results and conclusions from 328 radical operations of ractal carcinoma by one surgeon. Comparative anatomic studies with Brachydanio rerio and Latimeria chalumnae	Chirurg.	1995	66	1230-1238	
ZDB-PUB-040810-6	15297381	Yuan, S., and Joseph, E.M.	Small Heart Mutation Reveals Novel Roles of Na+/K+-ATPase in Maintaining Ventricular Cardiomyocyte Morphology and Viability in Zebrafish	Circ. Res.	2004	95(6)	595-603	
ZDB-PUB-060403-13	16574913	Miano, J.M.	Fishing for function in zebrafish	Circ. Res.	2006	98(6)	723-726	
ZDB-PUB-060703-19	16809551	Rottbauer, W., Wessels, G., Dahme, T., Just, S., Trano, N., Hassel, D., Burns, C.G., Katus, H.A., and Fishman, M.C.	Cardiac Myosin Light Chain-2. A Novel Essential Component of Thick-Myofilament Assembly and Contractility of the Heart	Circ. Res.	2006	99(3)	323-331	
ZDB-PUB-061229-5	17170364	Seeley, M., Huang, W., Chen, Z., Wolff, W.O., Lin, X., and Xu, X.	Depletion of Zebrafish Titin Reduces Cardiac Contractility by Disrupting the Assembly of Z-Discs and A-Bands	Circ. Res.	2007	100(2)	238-245	
ZDB-PUB-080414-6	18388326	Xiong, J.W., Yu, Q., Zhang, J., and Mably, J.D.	An Acyltransferase Controls the Generation of Hematopoietic and Endothelial Lineages in Zebrafish	Circ. Res.	2008	102(9)	1057-1064	
ZDB-PUB-080902-29	18757825	Garnaas, M.K., Moodie, K.L., Liu, M.L., Samant, G.V., Li, K., Marx, R., Baraban, J.M., Horowitz, A., and Ramchandran, R.	Syx, a RhoA Guanine Exchange Factor, Is Essential for Angiogenesis In Vivo	Circ. Res.	2008	103(7)	710-716	
ZDB-PUB-090204-16	19168438	Meder, B., Laufer, C., Hassel, D., Just, S., Marquart, S., Vogel, B., Hess, A., Fishman, M.C., Katus, H.A., and Rottbauer, W.	A Single Serine in the Carboxyl Terminus of Cardiac Essential Myosin Light Chain-1 Controls Cardiomyocyte Contractility In Vivo	Circ. Res.	2009	104(5)	650-659	
ZDB-PUB-090310-15	19265037	Stoletov, K., Fang, L., Choi, S.H., Hartvigsen, K., Hansen, L.F., Hall, C., Pattison, J., Juliano, J., Miller, E.R., Almazan, F., Crosier, P., Witztum, J.L., Klemke, R.L., and Miller, Y.I.	Vascular Lipid Accumulation, Lipoprotein Oxidation, and Macrophage Lipid Uptake in Hypercholesterolemic Zebrafish	Circ. Res.	2009	104(8)	952-960	
ZDB-PUB-090511-24	19423848	Fukui, H., Hanaoka, R., and Kawahara, A.	Noncanonical Activity of Seryl-tRNA Synthetase Is Involved in Vascular Development	Circ. Res.	2009	104(11)	1253-1259	
ZDB-PUB-100302-15	20185799	Yu, P.C., Gu, S.Y., Bu, J.W., and Du, J.L.	TRPC1 Is Essential for In Vivo Angiogenesis in Zebrafish	Circ. Res.	2010	\ 	\ 	
ZDB-PUB-060703-2	16794186	Khuchua, Z., Yue, Z., Batts, L., and Strauss, A.W.	A Zebrafish Model of Human Barth Syndrome Reveals the Essential Role of Tafazzin in Cardiac Development and Function	Circ. Res.	2006	99(2)	201-208	
ZDB-PUB-080124-8	18174465	Dowling, J.J., Gibbs, E., Russell, M., Goldman, D., Minarcik, J., Golden, J.A., and Feldman, E.L.	Kindlin-2 Is an Essential Component of Intercalated Discs and Is Required for Vertebrate Cardiac Structure and Function	Circ. Res.	2008	102(4)	423-431	
ZDB-PUB-080218-11	18202314	Rohr, S., Otten, C., and Abdelilah-Seyfried, S.	Asymmetric involution of the myocardial field drives heart tube formation in zebrafish	Circ. Res.	2008	102(2)	e12-19	
ZDB-PUB-080306-16	18292601	Sun, X., Zhang, R., Lin, X., and Xu, X.	Wnt3a Regulates the Development of Cardiac Neural Crest Cells by Modulating Expression of crip2 in Rhombomere 6	Circ. Res.	2008	102(7)	831-839	
ZDB-PUB-080331-18	18369157	Yao, Y., Shahbazian, A., and Boström, K.I.	Proline and γ-Carboxylated Glutamate Residues in Matrix Gla Protein Are Critical for Binding of Bone Morphogenetic Protein-4	Circ. Res.	2008	102(9)	1065-1074	
ZDB-PUB-090716-12	19590046	Zheng, Y., Vertuani, S., Nyström, S., Audebert, S., Meijer, I., Tegnebratt, T., Borg, J.P., Uhlén, P., Majumdar, A., and Holmgren, L.	Angiomotin-Like Protein 1 Controls Endothelial Polarity and Junction Stability During Sprouting Angiogenesis	Circ. Res.	2009	105(3)	260-270	
ZDB-PUB-961014-307	8156624	Fishman, M.C. and Stainier, D.Y.R.	Cardiovascular development: prospects for a genetic approach	Circ. Res.	1994	74	757-763	
ZDB-PUB-970102-3	7614708	Yutzey, K.E. and Bader, D.	Diversification of cardiomyogenic cell lineages during early heart development	Circ. Res.	1995	77(2)	216-9	
ZDB-PUB-060302-7	16484612	Wenzlau, J.M., Garl, P.J., Simpson, P., Stenmark, K.R., West, J., Artinger, K.B., Nemenoff, R.A., and Weiser-Evans, M.C.	Embryonic Growth-Associated Protein Is One Subunit of a Novel N-Terminal Acetyltransferase Complex Essential for Embryonic Vascular Development	Circ. Res.	2006	98(6)	846-855	
ZDB-PUB-071125-30	18032732	Herpers, R., van de Kamp, E., Duckers, H.J., and Schulte-Merker, S.	Redundant Roles for Sox7 and Sox18 in Arteriovenous Specification in Zebrafish	Circ. Res.	2008	102(1)	12-15	
ZDB-PUB-080714-16	18617693	Eyries, M., Siegfried, G., Ciumas, M., Montagne, K., Agrapart, M., Lebrin, F., and Soubrier, F.	Hypoxia-Induced Apelin Expression Regulates Endothelial Cell Proliferation and Regenerative Angiogenesis	Circ. Res.	2008	103(4)	432-440	
ZDB-PUB-080922-23	18787191	Heinke, J., Wehofsits, L., Zhou, Q., Zoeller, C., Baar, K.M., Helbing, T., Laib, A., Augustin, H., Bode, C., Patterson, C., and Moser, M.	BMPER Is an Endothelial Cell Regulator and Controls Bone Morphogenetic Protein-4-Dependent Angiogenesis	Circ. Res.	2008	103(8)	804-812	
ZDB-PUB-081008-10	18832752	Liu, F., and Patient, R.	Genome-Wide Analysis of the Zebrafish ETS Family Identifies Three Genes Required for Hemangioblast Differentiation or Angiogenesis	Circ. Res.	2008	103(10)	1147-1154	
ZDB-PUB-090511-23	19423847	Herzog, W., Müller, K., Huisken, J., and Stainier, D.Y.	Genetic Evidence for a Noncanonical Function of Seryl-tRNA Synthetase in Vascular Development	Circ. Res.	2009	104(11)	1260-1266	
ZDB-PUB-090629-14	19542015	Hooper, A.T., Shmelkov, S.V., Gupta, S., Milde, T., Bambino, K., Gillen, K., Goetz, M., Chavala, S., Baljevic, M., Murphy, A.J., Valenzuela, D.M., Gale, N.W., Thurston, G., Yancopoulos, G.D., Vahdat, L., Evans, T., and Rafii, S.	Angiomodulin Is a Specific Marker of Vasculature and Regulates Vascular Endothelial Growth Factor-A-Dependent Neoangiogenesis	Circ. Res.	2009	105(2)	201-208	
ZDB-PUB-961101-13	8756015	Pelster, B. and Burggren, W.W.	Disruption of hemoglobin oxygen transport does not impact oxygen-dependent physiological processes in developing embryos of zebra fish (Danio rerio)	Circ. Res.	1996	79(2)	358-362	
ZDB-PUB-100126-12	20093627	Seeger, T.S., Frank, D., Rohr, C., Will, R., Just, S., Grund, C., Lyon, R., Lüdde, M., Koegl, M., Sheikh, F., Rottbauer, W., Franke, W.W., Katus, H.A., Olson, E.N., and Frey, N.	Myozap, a Novel Intercalated Disc Protein, Activates Serum Response Factor-Dependent Signaling and Is Required to Maintain Cardiac Function In Vivo	Circ. Res.	2010	\ 	\ 	
ZDB-PUB-961014-617	none	Klyachko, O.S. and Ozernyuk, N.D.	The effect of temperature on the kinetic properties of lactate dehydrogenase from embryos of various fish species	Comp. Biochem. Physiol.	1994	107B	593-595	
ZDB-PUB-011010-1	11924796	Dykstra, M.J., Astrofsky, K.M., Schrenzel, M.D., Fox, J.G., Bullis, R.A., Farrington, S., Sigler, L., Rinaldi, M.G., and McGinnis, M.R	High mortality in a large-scale zebrafish colony (Brachydanio rerio Hamilton & Buchanan, 1822) associated with Lecythophora mutabilis (van Beyma) W. Gam's & McGinnis	Comp. Med.	2001	51(4)	361-368	
ZDB-PUB-030312-15	12625505	Murtha, J.M., Qi, W., and Keller, E.T.	Hematologic and serum biochemical values for zebrafish (Danio rerio)	Comp. Med.	2003	53(1)	37-41	
ZDB-PUB-091120-16	19887024	Kim, D.J., Seok, S.H., Baek, M.W., Lee, H.Y., Na, Y.R., Park, S.H., Lee, H.K., Dutta, N.K., Kawakami, K., and Park, J.H.	Estrogen-responsive transient expression assay using a brain aromatase-based reporter gene in zebrafish (Danio rerio)	Comp. Med.	2009	59(5)	416-423	
ZDB-PUB-020701-2	12211280	Kent, M.L., Bishop-Stewart, J.K., Matthews, J.L., and Spitsbergen, J.M.	Pseudocapillaria tomentosa, a nematode pathogen, and associated neoplasms of zebrafish (Danio rerio) kept in research colonies	Comp. Med.	2002	52(4)	354-358	
ZDB-PUB-020912-11	12211282	Astrofsky, K.M., Schech, J.M., Sheppard, B.J., Obenschain, C.A., Chin, A.M., Kacergis, M.C., Laver, E.R., Bartholomew, J.L., and Fox, J.G.	High mortality due to Tetrahymena sp. infection in laboratory-maintained zebrafish (Brachydanio rerio)	Comp. Med.	2002	52(4)	363-367	
ZDB-PUB-040810-3	15294311	Feng, J., Ip, H.H., Cheng, S.H., and Chan, P.K.	A relational-tubular (ReTu) deformable model for vasculature quantification of zebrafish embryo from microangiography image series	Comput. Med. Imaging Graph.	2004	28(6)	333-344	
ZDB-PUB-100223-55	20171844	Campana, M., and Sarti, A.	Cell morphodynamics visualization from images of zebrafish embryogenesis	Comput. Med. Imaging Graph.	2010	\ 	\ 	
ZDB-PUB-020820-11	12489145	Verreijdt, L., Vandervennet, E., Sire, J.Y., and Huysseune, A.	Developmental differences between cranial bones in the zebrafish (Danio rerio): Some preliminary light and TEM observations	Connect. Tissue Res.	2002	43(2-3)	109-112	
ZDB-PUB-020820-10	12489143	Huysseune, A., van der Heyden, C., Verreijdt, L., Wautier, K., and van Damme, N.	Fish dentitions as paradigms for odontogenic questions	Connect. Tissue Res.	2002	43(2-3)	98-102	
ZDB-PUB-001206-3	11095059	Sax, C.M., Kays, W.T., Salamon, C., Chervenak, M.M., Xu, Y.S., and Piatigorsky, J.	Transketolase gene expression in the cornea is influenced by environmental factors and developmentally controlled events	Cornea	2000	19(6)	833-841	
ZDB-PUB-020807-21	12148049	Arav, A., Pearl, M., and Zeron, Y.	Does membrane lipid profile explain chilling sensitivity and membrane lipid phase transition of spermatozoa and oocytes?	Cryo. Lett.	2000	21(3)	179-186	
ZDB-PUB-070210-38	17256066	Cardona-Costa, J., Roig, J., Perez-Camps, M., and Garcia-Ximenez, F.	Vitrification of caudal fin explants from zebrafish adult specimens	Cryo. Lett.	2006	27(5)	329-332	
ZDB-PUB-071029-14	17962834	Cardona-Costa, J., and Garcia-Ximenez, F.	Vitrification of zebrafish embryo blastomeres in microvolumes	Cryo. Lett.	2007	28(4)	303-310	
ZDB-PUB-090526-8	19448862	Lin, C., Zhang, T., and Rawson, D.M.	Cryopreservation of zebrafish (Danio rerio) blastomeres by controlled slow cooling	Cryo. Lett.	2009	30(2)	132-141	
ZDB-PUB-961219-8	none	Zhang, T.T. and Rawson, D.M.	Permeability of the vitelline membrane of zebrafish (Brachydanio rerio) embryos to methanol and propane-1, 2-diol	Cryo. Lett.	1996	17(5)	273-280	
ZDB-PUB-981027-2	none	Liu, X.H., Zhang, T.T., and Rawson, D.M.	Feasibility of vitrification of zebrafish (Danio rerio) embryos using methanol	Cryo. Lett.	1998	19	309-318	
ZDB-PUB-000906-1	none	Pearl, M. and Arav, A.	Chilling sensitivity in zebrafish (Brachydanio rerio) oocytes is related to lipid phase transition	Cryo. Lett.	2000	21(3)	171-178	
ZDB-PUB-090318-16	19280050	Zampolla, T., Zhang, T., and Rawson, D.M.	Evaluation of zebrafish (Danio rerio) ovarian follicle viability by simultaneous staining with fluorescein diacetate and propidium iodide	Cryo. Lett.	2008	29(6)	463-475	
ZDB-PUB-090526-9	19448864	Bono-Mestre, C., Cardona-Costa, J., and García-Ximenez, F.	Effects on cell viability of three zebrafish testicular cell or tissue cryopreservation methods	Cryo. Lett.	2009	30(2)	148-152	
ZDB-PUB-050125-8	15660168	Plachinta, M., Zhang, T., and Rawson, D.M.	Studies on cryoprotectant toxicity to zebrafish (Danio rerio) oocytes	Cryo. Lett.	2004	25(6)	415-424	
ZDB-PUB-070210-37	17256065	Kopeika, J., Zhang, T., and Rawson, D.	Zebrafish embryos (Danio rerio) using microinjection	Cryo. Lett.	2006	27(5)	319-328	
ZDB-PUB-090318-17	19280051	Tsai, S., Rawson, D.M., and Zhang, T.	Studies on cryoprotectant toxicity to early stage zebrafish (Danio rerio) ovarian follicles	Cryo. Lett.	2008	29(6)	477-483	
ZDB-PUB-040617-2	15196560	Raz, E.	Guidance of primordial germ cell migration	Curr. Opin. Cell Biol.	2004	16(2)	169-173	
ZDB-PUB-000309-30	10698293	Paw, B.H. and Zon, L.I.	Zebrafish: a genetic approach in studying hematopoiesis	Curr. Opin. Hematol.	2000	7(2)	79-84	
ZDB-PUB-040319-12	15018940	Ghysen, A., and Dambly-Chaudiere, C.	Development of the zebrafish lateral line	Curr. Opin. Neurobiol.	2004	14(1)	67-73	
ZDB-PUB-020227-5	11861169	Hutson, L.D. and Chien, C.-B.	Wiring the zebrafish: axon guidance and synaptogenesis	Curr. Opin. Neurobiol.	2002	12(1)	87-92	
ZDB-PUB-061221-1	8794051	Macdonald, R., and Wilson, S.W.	Pax proteins and eye development	Curr. Opin. Neurobiol.	1996	6(1)	49-56	
ZDB-PUB-050113-3	15642386	Scott, A., and Stemple, D.	Zebrafish notochordal basement membrane: signaling and structure	Curr. Top. Dev. Biol.	2005	65	229-253	
ZDB-PUB-961101-24	7828442	Fjose, A.	Homeobox and pax genes in zebrafish development	Curr. Top. Dev. Biol.	1994	29	65-100	
ZDB-PUB-980420-9	9399080	Gossler, A. and Hrabe de Angelis, M.	Somitogenesis	Curr. Top. Dev. Biol.	1998	38	225-287	
ZDB-PUB-041104-11	15522743	Lambrechts, D., and Carmeliet, P.	Genetics in zebrafish, mice, and humans to dissect congenital heart disease: insights in the role of VEGF	Curr. Top. Dev. Biol.	2004	62	189-224	
ZDB-PUB-961014-595	1743058	Kimmel, C.B., Schilling, T.F., and Hatta, K.	Patterning of body segments of the zebrafish embryo	Curr. Top. Dev. Biol.	1991	25	77-110	
ZDB-PUB-000824-34	10948449	Davidson, A.J. and Zon, L.I.	Turning mesoderm into blood: the formation of hematopoietic stem cells during embryogenesis	Curr. Top. Dev. Biol.	2000	50	45-60	
ZDB-PUB-030910-11	12959195	Liang, J.O. and Rubinstein, A.L.	Patterning of the zebrafish embryo by nodal signals	Curr. Top. Dev. Biol.	2003	55	143-171	
ZDB-PUB-050113-2	15642379	Stuckenholz, C., Ulanch, P.E., and Bahary, N.	From guts to brains: using zebrafish genetics to understand the innards of organogenesis	Curr. Top. Dev. Biol.	2005	65	47-82	
ZDB-PUB-040302-1	14970705	Park, H.B., Marklund, S., Jeon, J.T., Mickelson, J.R., Valberg, S.J., Sandberg, K., and Andersson L.	Molecular characterization and mutational screening of the PRKAG3 gene in the horse	Cytogenet. Genome Res.	2004	102(1-4)	211-216	
ZDB-PUB-060403-14	16575165	Yokomine, T., Hata, K., Tsudzuki, M., and Sasaki, H.	Evolution of the vertebrate DNMT3 gene family: a possible link between existence of DNMT3L and genomic imprinting	Cytogenet. Genome Res.	2006	113(1-4)	75-80	
ZDB-PUB-060719-6	16825768	Phillips, R.B., Amores, A., Morasch, M.R., Wilson, C., and Postlethwait, J.H.	Assignment of zebrafish genetic linkage groups to chromosomes	Cytogenet. Genome Res.	2006	114(2)	155-162	
ZDB-PUB-070813-4	17675847	Dünzinger, U., Haaf, T., and Zechner, U.	Conserved synteny of mammalian imprinted genes in chicken, frog, and fish genomes	Cytogenet. Genome Res.	2007	117(1-4)	78-85	
ZDB-PUB-030806-4	12900562	Nanda, I., Haaf, T., Schartl, M., Schmid, M., and Burt, D.W.	Comparative mapping of Z-orthologous genes in vertebrates: implications for the evolution of avian sex chromosomes	Cytogenet. Genome Res.	2002	99(1-4)	178-184	
ZDB-PUB-961014-467		Housz, I.F.M.	Was ist Brachydanio frankei?	DATZ	1964	1	9-12	
ZDB-PUB-050104-1	15620211	Wei, D., Yao, J., Yang, X., Cheng, L., Lu, D., and Xue, J.	Molecular cloning and expression of two closely related GTP-binding proteins from zebrafish	DNA Seq.	2004	15(4)	246-250	
ZDB-PUB-070303-28	17312945	Song, W., Zou, Z., Xu, F., Gu, X., Xu, X., and Zhao, Q.	Molecular cloning and expression of a second zebrafish aldehyde dehydrogenase 2 gene (aldh2b)	DNA Seq.	2006	17(4)	262-269	
ZDB-PUB-021213-3	12592708	Adolph, K.W.	The zebrafish thrombospondin 3 and 4 genes (thbs3 and thbs4): cDNA and protein structure	DNA Seq.	2002	13(5)	277-285	
ZDB-PUB-070330-13	17364807	Pei, D.S., Sun, Y.H., Chen, S.P., Wang, Y.P., and Zhu, Z.Y.	Cloning and characterization of cytochrome c oxidase subunit I (COXI) in Gobiocypris rarus	DNA Seq.	2007	18(1)	1-8	
ZDB-PUB-070920-12	17852335	Tian, J., Zhang, S., Liu, Z., and Wang, Y.	Evolution and expression of gamma-aminobutyric acid type A receptor-associated protein from the amphioxus Branchiostoma belcheri	DNA Seq.	2008	19(3)	319-325	
ZDB-PUB-070330-14	17364814	Hanaoka, R., Dawid, I.B., and Kawahara, A.	Cloning and expression of zebrafish genes encoding the heme synthesis enzymes uroporphyrinogen III synthase (UROS) and protoporphyrinogen oxidase (PPO)	DNA Seq.	2007	18(1)	54-60	
ZDB-PUB-080309-20	18300156	Zhang, S.H., Yao, J.H., Song, H.D., Wang, L., and Xue, J.L.	Cloning and expression of translation elongation factor 2 (EF-2) in zebrafish	DNA Seq.	2008	19(1)	1-7	
ZDB-PUB-971204-2	9255523	Liao, J., He, J., and Gong, Z.	An abundant zebrafish cDNA clone encodes a ras-like protein which is expressed ubiquitously	DNA Seq.	1997	7(5)	313-317	
ZDB-PUB-991102-24	10520744	Yan, T. and Gong, Z.	Assembly of a complete zebrafish mitochondrial 16S rRNA gene from overlapping expressed sequence tags	DNA Seq.	1998	9(3)	145-148	
ZDB-PUB-010904-1	11702784	Topczewski, J., Sepich, D.S., Myers, D.C., Walker, C., Amores, A., Lele, Z., Hammerschmidt, M., Postlethwait, J., and Solnica-Krezel, L.	The zebrafish glypican Knypek controls cell polarity during gastrulation movements of convergent extension	Developmental Cell	2001	1(2)	251-264	
ZDB-PUB-020513-6	12015969	Bakkers, J., Hild, M., Kramer, C., Furutani-Seiki, M., and Hammerschmidt, M.	Zebrafish Delta Np63 is a direct target of Bmp signaling and encodes a transcriptional repressor blocking neural specification in the ventral ectoderm	Developmental Cell	2002	2(5)	617-627	
ZDB-PUB-020820-6	12110173	Lawson, N.D., Vogel, A.M., and Weinstein, B.M.	sonic hedgehog and vascular endothelial growth factor act upstream of the Notch pathway during arterial endothelial differentiation	Developmental Cell	2002	3(1)	127-136	
ZDB-PUB-031111-9	14602067	Habeck, H., Vogel, A.M., and Schulte-Merker, S.	Getting connected	Developmental Cell	2003	5(5)	669-670	
ZDB-PUB-040211-2	14723850	Reim, G., Mizoguchi, T., Stainier, D.Y., Kikuchi, Y., and Brand, M.	The POU domain protein spg (pou2/Oct4) is essential for endoderm formation in cooperation with the HMG domain protein casanova	Developmental Cell	2004	6(1)	91-101	
ZDB-PUB-040322-7	15030760	Trinh, L.A., and Stainier, D.Y.	Fibronectin Regulates Epithelial Organization during Myocardial Migration in Zebrafish	Developmental Cell	2004	6(3)	371-382	
ZDB-PUB-040408-1	15068797	Reichman-Fried, M., Minina, S., and Raz, E.	Autonomous modes of behavior in primordial germ cell migration	Developmental Cell	2004	6(4)	589-596	
ZDB-PUB-040709-7	15239961	Kawakami, K., Takeda, H., Kawakami, N., Kobayashi, M., Matsuda, N., and Mishina, M.	A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish	Developmental Cell	2004	7(1)	133-144	
ZDB-PUB-041008-8	15469843	Coutinho, P., Parsons, M.J., Thomas, K.A., Hirst, E.M., Saude, L., Campos, I., Williams, P.H., Stemple, D.L.	Differential Requirements for COPI Transport during Vertebrate Early Development	Developmental Cell	2004	7(4)	547-558	
ZDB-PUB-041202-3	15572133	Henry, C.A., and Amacher, S.L.	Zebrafish slow muscle cell migration induces a wave of fast muscle morphogenesis	Developmental Cell	2004	7(6)	917-923	
ZDB-PUB-050104-4	15621534	Galloway, J.L., Wingert, R.A., Thisse, C., Thisse, B., and Zon, L.I.	Loss of gata1 but not gata2 converts erythropoiesis to myelopoiesis in zebrafish embryos	Developmental Cell	2005	8(1)	109-116	
ZDB-PUB-050413-4	15809040	Koshida, S., Kishimoto, Y., Ustumi, H., Shimizu, T., Furutani-Seiki, M., Kondoh, H., and Takada, S.	Integrinalpha5-Dependent Fibronectin Accumulation for Maintenance of Somite Boundaries in Zebrafish Embryos	Developmental Cell	2005	8(4)	587-598	
ZDB-PUB-050510-3	15866162	Wallace, K.N., Dolan, A.C., Seiler, C., Smith, E.M., Yusuff, S., Chaille-Arnold, L., Judson, B., Sierk, R., Yengo, C., Sweeney, H.L., and Pack, M.	Mutation of smooth muscle Myosin causes epithelial invasion and cystic expansion of the zebrafish intestine	Developmental Cell	2005	8(5)	717-726	
ZDB-PUB-051005-5	16198294	Bjornson, C.R., Griffin, K.J., Farr, G.H. 3rd, Terashima, A., Himeda, C., Kikuchi, Y., and Kimelman, D.	Eomesodermin is a localized maternal determinant required for endoderm induction in zebrafish	Developmental Cell	2005	9(4)	523-533	
ZDB-PUB-051214-10	16326386	Kawamura, A., Koshida, S., Hijikata, H., Ohbayashi, A., Kondoh, H., and Takada, S.	Groucho-associated transcriptional repressor ripply1 is required for proper transition from the presomitic mesoderm to somites	Developmental Cell	2005	9(6)	735-744	
ZDB-PUB-060616-18	16740480	Chittenden, T.W., Claes, F., Lanahan, A.A., Autiero, M., Palac, R.T., Tkachenko, E.V., Elfenbein, A., Ruiz de Almodovar, C., Dedkov, E., Tomanek, R., Li, W., Westmore, M., Singh, J., Horowitz, A., Mulligan-Kehoe, M.J., Moodie, K.L., Zhuang, Z.W., Carmeliet, P., and Simons, M.	Selective regulation of arterial branching morphogenesis by synectin	Developmental Cell	2006	10(6)	783-795	
ZDB-PUB-070212-30	17276343	Batut, J., Howell, M., and Hill, C.S.	Kinesin-mediated transport of smad2 is required for signaling in response to tgf-Beta ligands	Developmental Cell	2007	12(2)	261-274	
ZDB-PUB-070310-6	17336895	Quertermous, T.	Apelin and its G protein-coupled receptor regulate cardiac development as well as cardiac function	Developmental Cell	2007	12(3)	319-320	
ZDB-PUB-070310-9	17336906	Scott, I.C., Masri, B., D'Amico, L.A., Jin, S.W., Jungblut, B., Wehman, A.M., Baier, H., Audigier, Y., and Stainier, D.Y.	The G protein-coupled receptor agtrl1b regulates early development of myocardial progenitors	Developmental Cell	2007	12(3)	403-413	
ZDB-PUB-070813-11	17681136	Schoenebeck, J.J., Keegan, B.R., and Yelon, D.	Vessel and blood specification override cardiac potential in anterior mesoderm	Developmental Cell	2007	13(2)	254-267	
ZDB-PUB-080421-3	18410733	Chung, W.S., and Stainier, D.Y.	Intra-endodermal interactions are required for pancreatic beta cell induction	Developmental Cell	2008	14(4)	582-593	
ZDB-PUB-080616-15	18539122	Kishimoto, N., Cao, Y., Park, A., and Sun, Z.	Cystic kidney gene seahorse regulates cilia-mediated processes and Wnt pathways	Developmental Cell	2008	14(6)	954-961	
ZDB-PUB-080826-7	18694563	Geng, X., Speirs, C., Lagutin, O., Inbal, A., Liu, W., Solnica-Krezel, L., Jeong, Y., Epstein, D.J., and Oliver, G.	Haploinsufficiency of Six3 fails to activate Sonic hedgehog expression in the ventral forebrain and causes holoprosencephaly	Developmental Cell	2008	15(2)	236-247	
ZDB-PUB-081114-12	19000838	Chung, W.S., Shin, C.H., and Stainier, D.Y.	Bmp2 signaling regulates the hepatic versus pancreatic fate decision	Developmental Cell	2008	15(5)	738-748	
ZDB-PUB-090526-27	19460350	Warga, R.M., Kane, D.A., and Ho, R.K.	Fate mapping embryonic blood in zebrafish: multi- and unipotential lineages are segregated at gastrulation	Developmental Cell	2009	16(5)	744-755	
ZDB-PUB-090616-2	18194657	Tucker, J.A., Mintzer, K.A., and Mullins, M.C.	The BMP signaling gradient patterns dorsoventral tissues in a temporally progressive manner along the anteroposterior axis	Developmental Cell	2008	14(1)	108-119	
ZDB-PUB-090622-6	19531357	Wloga, D., Webster, D.M., Rogowski, K., Bré, M.H., Levilliers, N., Jerka-Dziadosz, M., Janke, C., Dougan, S.T., and Gaertig, J.	TTLL3 Is a tubulin glycine ligase that regulates the assembly of cilia	Developmental Cell	2009	16(6)	867-876	
ZDB-PUB-091204-9	15363410	Ohta, K., Lupo, G., Kuriyama, S., Keynes, R., Holt, C.E., Harris, W.A., Tanaka, H., and Ohnuma, S.	Tsukushi functions as an organizer inducer by inhibition of BMP activity in cooperation with chordin	Developmental Cell	2004	7(3)	347-358	
ZDB-PUB-011116-4	11703928	Lekven, A.C., Thorpe, C.J., Waxman, J.S., and Moon, R.T.	Zebrafish wnt8 encodes two wnt8 proteins on a bicistronic transcript and is required for mesoderm and neurectoderm patterning	Developmental Cell	2001	1(1)	103-114	
ZDB-PUB-020624-3	12062078	Stemple, D.L.	Pioneering work in vertebrate neural development	Developmental Cell	2002	2(6)	687-688	
ZDB-PUB-031217-2	14667409	Cortés, F., Daggett, D., Bryson-Richardson, R.J., Neyt, C., Maule, J., Gautier, P., Hollway, G.E., Keenan, D., and Currie, P.D.	Cadherin-mediated differential cell adhesion controls slow muscle cell migration in the developing zebrafish myotome	Developmental Cell	2003	5(6)	865-876	
ZDB-PUB-040408-2	15068793	Cheng, Y.C., Amoyel, M., Qiu, X., Jiang, Y.J., Xu, Q., and Wilkinson, D.G.	Notch activation regulates the segregation and differentiation of rhombomere boundary cells in the zebrafish hindbrain	Developmental Cell	2004	6(4)	539-550	
ZDB-PUB-040709-5	15239945	Deutsch, U.	Semaphorins Guide PerPlexeD Endothelial Cells	Developmental Cell	2004	7(1)	1-2	
ZDB-PUB-040609-15	15177027	Wagner, D.S., Dosch, R., Mintzer, K.A., Wiemelt, A.P., and Mullins, M.C.	Maternal Control of Development at the Midblastula Transition and beyond; Mutants from the Zebrafish II	Developmental Cell	2004	6(6)	781-790	
ZDB-PUB-050303-2	15737934	Gering, M., and Patient, R.	Hedgehog Signaling Is Required for Adult Blood Stem Cell Formation in Zebrafish Embryos	Developmental Cell	2005	8(3)	389-400	
ZDB-PUB-050711-3	15992547	Sarmah, B., Latimer, A.J., Appel, B., and Wente, S.R.	Inositol polyphosphates regulate zebrafish left-right asymmetry	Developmental Cell	2005	9(1)	133-145	
ZDB-PUB-051005-6	16198297	Ulrich, F., Krieg, M., Schotz, E.M., Link, V., Castanon, I., Schnabel, V., Taubenberger, A., Mueller, D., Puech, PH., and Heisenberg, C.P.	Wnt11 Functions in Gastrulation by Controlling Cell Cohesion through Rab5c and E-Cadherin	Developmental Cell	2005	9(4)	555-564	
ZDB-PUB-060517-9	16678780	Haas, P., and Gilmour, D.	Chemokine signaling mediates self-organizing tissue migration in the zebrafish lateral line	Developmental Cell	2006	10(5)	673-680	
ZDB-PUB-070212-29	17276339	Hollway, G.E., Bryson-Richardson, R.J., Berger, S., Cole, N.J., Hall, T.E., and Currie, P.D.	Whole-somite rotation generates muscle progenitor cell compartments in the developing zebrafish embryo	Developmental Cell	2007	12(2)	207-219	
ZDB-PUB-070310-7	17336901	Tsai, I.C., Amack, J.D., Gao, Z.H., Band, V., Yost, H.J., and Virshup, D.M.	A Wnt-CKIepsilon-Rap1 Pathway Regulates Gastrulation by Modulating SIPA1L1, a Rap GTPase Activating Protein	Developmental Cell	2007	12(3)	335-347	
ZDB-PUB-070813-12	17681137	Rui, Y., Xu, Z., Xiong, B., Cao, Y., Lin, S., Zhang, M., Chan, S.C., Luo, W., Han, Y., Lu, Z., Ye, Z., Zhou, H.M., Han, J., Meng, A., and Lin, S.C.	A beta-Catenin-Independent Dorsalization Pathway Activated by Axin/JNK Signaling and Antagonized by Aida	Developmental Cell	2007	13(2)	268-282	
ZDB-PUB-080826-8	18694566	Fish, J.E., Santoro, M.M., Morton, S.U., Yu, S., Yeh, R.F., Wythe, J.D., Ivey, K.N., Bruneau, B.G., Stainier, D.Y., and Srivastava, D.	miR-126 regulates angiogenic signaling and vascular integrity	Developmental Cell	2008	15(2)	272-284	
ZDB-PUB-081114-13	19000839	Aman, A., and Piotrowski, T.	Wnt/beta-catenin and Fgf signaling control collective cell migration by restricting chemokine receptor expression	Developmental Cell	2008	15(5)	749-761	
ZDB-PUB-081218-23	19081074	Loktev, A.V., Zhang, Q., Beck, J.S., Searby, C.C., Scheetz, T.E., Bazan, J.F., Slusarski, D.C., Sheffield, V.C., Jackson, P.K., and Nachury, M.V.	A BBSome Subunit Links Ciliogenesis, Microtubule Stability, and Acetylation	Developmental Cell	2008	15(6)	854-865	
ZDB-PUB-090217-41	19217429	Liu, Y.H., Jakobsen, J.S., Valentin, G., Amarantos, I., Gilmour, D.T., and Furlong, E.E.	A Systematic Analysis of Tinman Function Reveals Eya and JAK-STAT Signaling as Essential Regulators of Muscle Development	Developmental Cell	2009	16(2)	280-291	
ZDB-PUB-090622-7	19531361	Wilkinson, R.N., Pouget, C., Gering, M., Russell, A.J., Davies, S.G., Kimelman, D., and Patient, R.	Hedgehog and Bmp polarize hematopoietic stem cell emergence in the zebrafish dorsal aorta	Developmental Cell	2009	16(6)	909-916	
ZDB-PUB-091101-11	19853569	Choe, S.K., Lu, P., Nakamura, M., Lee, J., and Sagerström, C.G.	Meis cofactors control HDAC and CBP accessibility at Hox-regulated promoters during zebrafish embryogenesis	Developmental Cell	2009	17(4)	561-567	
ZDB-PUB-100223-34	20159594	Ko, H.W., Norman, R.X., Tran, J., Fuller, K.P., Fukuda, M., and Eggenschwiler, J.T.	Broad-Minded Links Cell Cycle-Related Kinase to Cilia Assembly and Hedgehog Signal Transduction	Developmental Cell	2010	18(2)	237-247	
ZDB-PUB-011205-2	11702785	Rottbauer, W., Baker, K., Wo, Z.G., Mohideen, M.A., Cantiello, H.F., and Fishman, M.C.	Growth and function of the embryonic heart depend upon the cardiac-specific L-type calcium channel alpha1 subunit	Developmental Cell	2001	1(2)	265-275	
ZDB-PUB-020301-1	11879641	Yamashita, S., Miyagi, C., Carmany-Rampey, A., Shimizu, T., Fujii, R., Schier, A.F., and Hirano, T.	Stat3 controls cell movements during zebrafish gastrulation	Developmental Cell	2002	2(3)	363-375	
ZDB-PUB-020513-5	12015968	Lee, H. and Kimelman, D.	A dominant-negative form of p63 is required for epidermal proliferation in zebrafish	Developmental Cell	2002	2(5)	607-616	
ZDB-PUB-021107-1	12431378	Waskiewicz, A.J., Rikhof, H.A., and Moens, C.B.	Eliminating zebrafish Pbx proteins reveals a hindbrain ground state	Developmental Cell	2002	3(5)	723-733	
ZDB-PUB-030210-2	12530964	Itoh, M., Kim, C.-H., Palardy, G., Oda, T., Jiang, Y.-J., Maust, D., Yeo, S.-Y., Lorick, K., Wright, G.J., Ariza-McNaughton, L., Weissman, A.M., Lewis, J., Chandrasekharappa, S.C., and Chitnis, A.B.	Mind Bomb is a ubiquitin ligase that is essential for efficient activation of notch signaling by Delta	Developmental Cell	2003	4(1)	67-82	
ZDB-PUB-031217-3	14667412	Liu, T.X., Howlett, N.G., Deng, M., Langenau, D.M., Hsu, K., Rhodes, J., Kanki, J.P., D'Andrea, A.D., and Look, A.T.	Knockdown of zebrafish fancd2 causes developmental abnormalities via p53-dependent apoptosis	Developmental Cell	2003	5(6)	903-914	
ZDB-PUB-040113-1	12110170	Francis, R., McGrath, G., Zhang, J., Ruddy, D.A., Sym, M., Apfeld, J., Nicoll, M., Maxwell, M., Hai, B., Ellis, M.C., Parks, A.L., Xu, W., Li, J., Gurney, M., Myers, R.L., Himes, C.S., Hiebsch, R., Ruble, C., Nye, J.S., and Curtis, D.	aph-1 and pen-2 are required for Notch pathway signaling, gamma-secretase cleavage of betaAPP, and presenilin protein accumulation	Developmental Cell	2002	3(1)	85-97	
ZDB-PUB-040211-1	14960282	Thorpe, J.L., Doitsidou, M., Ho, S.-Y., Raz, E., and Farber, S.A.	Germ Cell Migration in Zebrafish Is Dependent on HMGCoA Reductase Activity and Prenylation	Developmental Cell	2004	6	5-302	
ZDB-PUB-040609-16	15177026	Dosch, R., Wagner, D.S., Mintzer, K.A., Runke, G., Wiemelt, A.P., and Mullins, M.C.	Maternal Control of Vertebrate Development before the Midblastula Transition; Mutants from the Zebrafish I	Developmental Cell	2004	6(6)	771-780	
ZDB-PUB-040709-6	15239959	Torres-Vázquez, J., Gitler, A.D., Fraser, S.D., Berk, J.D., Pham, V.N., Fishman, M.C., Childs, S., Epstein, J.A., and Weinstein, B.M.	Semaphorin-plexin signaling guides patterning of the developing vasculature	Developmental Cell	2004	7(1)	117-123	
ZDB-PUB-040810-5	15296721	Rohde, L.A., Oates, A.C., and Ho, R.K.	A Crucial Interaction between Embryonic Red Blood Cell Progenitors and Paraxial Mesoderm Revealed in spadetail Embryos	Developmental Cell	2004	7(2)	251-262	
ZDB-PUB-040916-1	15363414	López-Schier, H., Starr, C.J., Kappler, J.A., Kollmar, R., and Hudspeth, A.J.	Directional cell migration establishes the axes of planar polarity in the posterior lateral-line organ of the zebrafish	Developmental Cell	2004	7(3)	401-412	
ZDB-PUB-050104-3	15621533	Rhodes, J., Hagen, A., Hsu, K., Deng, M., Liu, T.X., Look, A.T., and Kanki, J.P.	Interplay of pu.1 and gata1 determines myelo-erythroid progenitor cell fate in zebrafish	Developmental Cell	2005	8(1)	97-108	
ZDB-PUB-050413-3	15809039	Jülich, D., Geisler, R., Tübingen 2000 Screen Consortium, and Holley, S.A.	Integrinalpha5 and Delta/Notch Signaling Have Complementary Spatiotemporal Requirements during Zebrafish Somitogenesis	Developmental Cell	2005	8(4)	575-586	
ZDB-PUB-060124-3	16399078	Low, S.H., Vasanth, S., Larson, C.H., Mukherjee, S., Sharma, N., Kinter, M.T., Kane, M.E., Obara, T., and Weimbs, T.	Polycystin-1, STAT6, and P100 Function in a Pathway that Transduces Ciliary Mechanosensation and Is Activated in Polycystic Kidney Disease	Developmental Cell	2006	10(1)	57-69	
ZDB-PUB-061108-16	17084355	Blaser, H., Reichman-Fried, M., Castanon, I., Dumstrei, K., Marlow, F.L., Kawakami, K., Solnica-Krezel, L., Heisenberg, C.P., and Raz, E.	Migration of zebrafish primordial germ cells: a role for Myosin contraction and cytoplasmic flow	Developmental Cell	2006	11(5)	613-627	
ZDB-PUB-070122-14	17199043	Aizawa, H., Goto, M., Sato, T., and Okamoto, H.	Temporally regulated asymmetric neurogenesis causes left-right difference in the zebrafish habenular structures	Developmental Cell	2007	12(1)	87-98	
ZDB-PUB-070310-8	17336905	Zeng, X.X., Wilm, T.P., Sepich, D.S., and Solnica-Krezel, L.	Apelin and Its Receptor Control Heart Field Formation during Zebrafish Gastrulation	Developmental Cell	2007	12(3)	391-402	
ZDB-PUB-070601-1	16890162	Xiong, B., Rui, Y., Zhang, M., Shi, K., Jia, S., Tian, T., Yin, K., Huang, H., Lin, S., Zhao, X., Chen, Y., Chen, Y.G., Lin, S.C., and Meng, A.	Tob1 controls dorsal development of zebrafish embryos by antagonizing maternal beta-catenin transcriptional activity	Developmental Cell	2006	11(2)	225-238	
ZDB-PUB-070711-32	17609106	Tzahor, E.	Wnt/beta-Catenin Signaling and Cardiogenesis: Timing Does Matter	Developmental Cell	2007	13(1)	10-13	
ZDB-PUB-080309-9	18267096	Smith, K.A., Chocron, S., von der Hardt, S., de Pater, E., Soufan, A., Bussmann, J., Schulte-Merker, S., Hammerschmidt, M., and Bakkers, J.	Rotation and asymmetric development of the zebrafish heart requires directed migration of cardiac progenitor cells	Developmental Cell	2008	14(2)	287-297	
ZDB-PUB-080710-1	15809038	Martinez-Morales, J.R., Del Bene, F., Nica, G., Hammerschmidt, M., Bovolenta, P., and Wittbrodt, J.	Differentiation of the vertebrate retina is coordinated by an FGF signaling center	Developmental Cell	2005	8(4)	565-574	
ZDB-PUB-080714-9	18606146	Martin, B.L., and Kimelman, D.	Regulation of canonical Wnt signaling by Brachyury is essential for posterior mesoderm formation	Developmental Cell	2008	15(1)	121-133	
ZDB-PUB-081218-24	19081079	Waxman, J.S., Keegan, B.R., Roberts, R.W., Poss, K.D., and Yelon, D.	Hoxb5b acts downstream of retinoic Acid signaling in the forelimb field to restrict heart field potential in zebrafish	Developmental Cell	2008	15(6)	923-934	
ZDB-PUB-090123-14	19154719	Phng, L.K., Potente, M., Leslie, J.D., Babbage, J., Nyqvist, D., Lobov, I., Ondr, J.K., Rao, S., Lang, R.A., Thurston, G., and Gerhardt, H.	Nrarp coordinates endothelial Notch and Wnt signaling to control vessel density in angiogenesis	Developmental Cell	2009	16(1)	70-82	
ZDB-PUB-090424-28	19386270	Castets, M., Coissieux, M.M., Delloye-Bourgeois, C., Bernard, L., Delcros, J.G., Bernet, A